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Revision 47598

Added by Antonis Lempesis almost 7 years ago

- Fixed duplicate dependncies
- Fixed an error in eligibility checking
- Fixed an error in account activation
- Organized imports

View differences:

modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/utils/EmailUtils.java
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package eu.dnetlib.goldoa.service.utils;
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import eu.dnetlib.goldoa.domain.Budget;


  		




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import eu.dnetlib.goldoa.domain.User;


  		




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import eu.dnetlib.goldoa.domain.Request;


  		




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import eu.dnetlib.goldoa.domain.Role;


  		




  
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import eu.dnetlib.goldoa.domain.User;


  		




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import javax.mail.MessagingException;


  		




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import java.util.List;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/utils/EmailUtilsImpl.java
    
  





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import eu.dnetlib.goldoa.service.dao.UserDAO;


  		




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import org.apache.log4j.Logger;


  		




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import org.springframework.beans.factory.annotation.Autowired;


  		




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import org.springframework.beans.factory.annotation.Value;


  		




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import org.springframework.stereotype.Service;


  		




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import javax.mail.MessagingException;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/ProjectManagerImpl.java
    
  





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package eu.dnetlib.goldoa.service;


  		




  
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import eu.dnetlib.goldoa.domain.Project;


  		




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import eu.dnetlib.goldoa.domain.Request;


  		




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import eu.dnetlib.goldoa.domain.Vocabulary;


  		




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import eu.dnetlib.goldoa.service.dao.OrganizationDAO;


  		




  
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import eu.dnetlib.goldoa.service.dao.ProjectDAO;


  		




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import eu.dnetlib.goldoa.service.dao.RequestDAO;


  		




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import eu.dnetlib.goldoa.service.dao.UserDAO;


  		




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import eu.dnetlib.goldoa.service.dao.ProjectDAO;


  		




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import org.springframework.beans.factory.annotation.Autowired;


  		




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import org.springframework.beans.factory.annotation.Value;


  		




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import org.springframework.stereotype.Service;


  		




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import org.springframework.transaction.annotation.Transactional;


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/JournalDAO.java
    
  





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package eu.dnetlib.goldoa.service.dao;


  		




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//import eu.dnetlib.goldoa.domain.Currency;


  		




  
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import eu.dnetlib.goldoa.domain.Journal;


  		




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import eu.dnetlib.goldoa.domain.Project;


  		




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import eu.dnetlib.goldoa.domain.Publisher;


  		




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import eu.dnetlib.goldoa.domain.Vocabulary;


  		




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import org.apache.log4j.Logger;


  		




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import org.hibernate.criterion.Disjunction;


  		




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import org.hibernate.criterion.MatchMode;


  		




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import org.hibernate.criterion.Restrictions;


  		




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import org.springframework.stereotype.Repository;


  		




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import java.util.ArrayList;


  		




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import java.util.List;


  		




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/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/PublicationManagerImpl.java
    
  





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import com.fasterxml.jackson.databind.JsonNode;


  		




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import com.fasterxml.jackson.databind.ObjectMapper;


  		




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import eu.dnetlib.goldoa.domain.*;


  		




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//import eu.dnetlib.goldoa.domain.BankAccount;


  		




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import eu.dnetlib.goldoa.domain.Currency;


  		




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import eu.dnetlib.goldoa.domain.User;


  		




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import eu.dnetlib.goldoa.domain.Identifier;


  		




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import eu.dnetlib.goldoa.service.dao.PublicationDAO;


  		




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import org.apache.commons.codec.digest.DigestUtils;


  		




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import org.apache.log4j.Logger;


  		




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import java.io.InputStream;


  		




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import java.math.BigInteger;


  		




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import java.net.URL;


  		




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import java.util.ArrayList;


  		




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import java.util.Calendar;


  		




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import java.util.Date;


  		




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import java.util.Iterator;


  		




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import java.util.TimeZone;


  		




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//import eu.dnetlib.goldoa.domain.BankAccount;


  		




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/**


  		




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 * Created by antleb on 3/13/15.


  		




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 */


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/EligibilityManager.java
    
  





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import eu.dnetlib.goldoa.domain.Eligibility;


  		




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import eu.dnetlib.goldoa.domain.Request;


  		




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import org.springframework.context.annotation.Bean;


  		




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import org.springframework.stereotype.Component;


  		




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import org.springframework.stereotype.Service;


  		




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import javax.transaction.Transactional;


  		




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/**


  		




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 * Created by antleb on 3/9/15.


  		




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 */


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/stats/StatsManager.java
    
  





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package eu.dnetlib.goldoa.service.stats;


  		




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import eu.dnetlib.goldoa.domain.Request;


  		




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import eu.dnetlib.goldoa.domain.stats.Browse;


  		




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import eu.dnetlib.goldoa.domain.stats.DateSeries;


  		




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import eu.dnetlib.goldoa.domain.stats.MapData;


  		




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import eu.dnetlib.goldoa.domain.stats.Numbers;


  		




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import eu.dnetlib.goldoa.domain.stats.Series;


  		




  
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import eu.dnetlib.goldoa.domain.stats.*;


  		




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import java.util.Date;


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/utils/MailLibrary.java
    
  





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package eu.dnetlib.goldoa.service.utils;


  		




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import javax.annotation.PostConstruct;


  		




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import javax.mail.Message;


  		




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import javax.mail.MessagingException;


  		




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import javax.mail.PasswordAuthentication;


  		




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import javax.mail.Session;


  		




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import javax.mail.Transport;


  		




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import javax.mail.internet.AddressException;


  		




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import javax.mail.internet.InternetAddress;


  		




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import javax.mail.internet.MimeMessage;


  		




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import com.sun.org.apache.xpath.internal.operations.Bool;


  		




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import org.apache.commons.logging.Log;


  		




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import org.apache.commons.logging.LogFactory;


  		




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import org.springframework.beans.factory.annotation.Value;


  		




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import org.springframework.context.annotation.Configuration;


  		




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import org.springframework.stereotype.Service;


  		




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import javax.mail.*;


  		




  
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import javax.mail.internet.AddressException;


  		




  
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import javax.mail.internet.InternetAddress;


  		




  
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import javax.mail.internet.MimeMessage;


  		




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import java.io.IOException;


  		




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import java.util.Properties;


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/utils/LicenseUpdateTask.java
    
  





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import eu.dnetlib.goldoa.domain.Request;


  		




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import eu.dnetlib.goldoa.domain.stats.Tuple;


  		




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import eu.dnetlib.goldoa.service.PublicationManager;


  		




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import org.springframework.beans.factory.annotation.Autowired;


  		




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import org.springframework.jdbc.core.JdbcTemplate;


  		




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import org.springframework.jdbc.core.RowMapper;


  		




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import java.sql.SQLException;


  		




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import java.sql.Types;


  		




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import java.util.List;


  		




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import java.util.logging.StreamHandler;


  		




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/*


  		




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 * Created by antleb on 3/7/16.


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/SearchManagerImpl.java
    
  





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package eu.dnetlib.goldoa.service;


  		




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import eu.dnetlib.goldoa.domain.Vocabulary;


  		




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import org.springframework.beans.factory.annotation.Autowired;


  		




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import org.springframework.stereotype.Service;


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/eligibility/ProjectEligibiliyManager.java
    
  





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import eu.dnetlib.goldoa.domain.Eligibility;


  		




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import eu.dnetlib.goldoa.domain.Project;


  		




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import eu.dnetlib.goldoa.domain.Request;


  		




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import eu.dnetlib.goldoa.service.*;


  		




  
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import eu.dnetlib.goldoa.service.EligibilityManager;


  		




  
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import eu.dnetlib.goldoa.service.ProjectManager;


  		




  
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import eu.dnetlib.goldoa.service.RequestManager;


  		




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import org.springframework.beans.factory.annotation.Autowired;


  		




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import org.springframework.stereotype.Component;


  		




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import java.sql.Timestamp;


  		




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import java.util.Date;


  		




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import java.util.List;


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/test/java/unitest/ProfileTest.java
    
  





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package unitest;


  		




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import com.fasterxml.jackson.databind.ObjectMapper;


  		




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import com.fasterxml.jackson.databind.type.TypeFactory;


  		




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import com.sun.org.apache.regexp.internal.RE;


  		




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import eu.dnetlib.goldoa.domain.*;


  		




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import eu.dnetlib.goldoa.service.*;


  		




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import eu.dnetlib.goldoa.service.dao.UserDAO;


  		




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import eu.dnetlib.goldoa.service.eligibility.ProjectEligibiliyManager;


  		




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import net.sf.ehcache.hibernate.HibernateUtil;


  		




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import org.hibernate.Hibernate;


  		




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import org.hibernate.SessionFactory;


  		




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import org.hibernate.stat.SessionStatistics;


  		




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import org.hibernate.stat.Statistics;


  		




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import org.junit.Test;


  		




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import org.springframework.beans.factory.annotation.Autowired;


  		




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import org.springframework.test.annotation.Rollback;


  		




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import org.springframework.test.context.ContextConfiguration;


  		




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import org.springframework.test.context.junit4.SpringJUnit4ClassRunner;


  		




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import org.springframework.util.DigestUtils;


  		




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import javax.persistence.EntityManager;


  		




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import javax.persistence.EntityManagerFactory;


  		




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import java.io.IOException;


  		




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import java.nio.charset.Charset;


  		




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import java.util.ArrayList;


  		




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import java.util.LinkedHashMap;


  		




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import static org.junit.Assert.*;


  		




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/**


  		




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 * Created by panagiotis on 2/2/2017.


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/test/java/unitest/ManageRequestsTest.java
    
  





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import java.io.InputStream;


  		




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import java.util.concurrent.locks.StampedLock;


  		




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/**


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/test/java/unitest/MonitorTest.java
    
  





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/**


  		




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 */


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/test/java/unitest/PublicationTest.java
    
  





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import eu.dnetlib.goldoa.domain.PublicationType;


  		




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import eu.dnetlib.goldoa.domain.Publisher;


  		




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import eu.dnetlib.goldoa.service.PublicationManager;


  		




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import eu.dnetlib.goldoa.service.PublicationManagerImpl;


  		




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import eu.dnetlib.goldoa.service.PublisherManager;


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/test/java/unitest/StatisticsTest.java
    
  





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package unitest;


  		




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import com.google.gwt.i18n.client.NumberFormat;


  		




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import com.google.gwt.user.client.Window;


  		




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import eu.dnetlib.goldoa.domain.OrganizationManagerException;


  		




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import eu.dnetlib.goldoa.domain.Request;


  		




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import eu.dnetlib.goldoa.domain.stats.*;


  		




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import eu.dnetlib.goldoa.service.OrganizationManager;


  		




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import eu.dnetlib.goldoa.service.stats.StatsManager;


  		




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import eu.dnetlib.goldoa.service.stats.StatsManagerImpl;


  		




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import org.springframework.beans.factory.annotation.Autowired;


  		




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import org.springframework.test.context.junit4.SpringJUnit4ClassRunner;


  		




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import javax.transaction.Transactional;


  		




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import java.util.List;


  		




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import static org.junit.Assert.*;


  		




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/**


  		




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 * Created by panagiotis on 10/2/2017.


  		




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 */


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/model/GoldCoordinator.java
    
  





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package model;


  		




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import javax.persistence.Entity;


  		




  
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import javax.persistence.NamedQuery;


  		




  
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import javax.persistence.Table;


  		




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import java.io.Serializable;


  		




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import javax.persistence.*;


  		




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/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/model/GoldOrganization.java
    
  





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package model;


  		




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import javax.persistence.Entity;


  		




  
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import javax.persistence.NamedQuery;


  		




  
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import javax.persistence.Table;


  		




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import java.io.Serializable;


  		




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import javax.persistence.*;


  		




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/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/model/GoldProject.java
    
  





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package model;


  		




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import javax.persistence.*;


  		




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import java.io.Serializable;


  		




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import javax.persistence.*;


  		




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import eu.dnetlib.goldoa.domain.Funder;


  		




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import java.util.Date;


  		




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      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/SearchManager.java
    
  





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package eu.dnetlib.goldoa.service;


  		




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import eu.dnetlib.goldoa.domain.Vocabulary;


  		




  
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import com.google.gwt.user.client.rpc.IsSerializable;


  		




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import java.io.Serializable;


  		




  6
  6
  
    
import java.util.List;


  		




  ......




  10
  10
  
    
 */


  		




  11
  11
  
    
public interface SearchManager {


  		




  12
  12
  
    

  		




  13
  
  
    
	public enum TYPE implements Serializable {


  		




  
  13
  
    
	public enum TYPE implements IsSerializable {


  		




  14
  14
  
    
		PROJECT, ORGANISATION, JOURNAL, PUBLISHER, FUNDER;


  		




  15
  15
  
    
	}


  		




  16
  16
  
    

  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/FunderManagerImpl.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service;


  		




  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.domain.Funder;


  		




  4
  
  
    
import eu.dnetlib.goldoa.domain.Vocabulary;


  		




  5
  4
  
    
import eu.dnetlib.goldoa.service.dao.FunderDAO;


  		




  6
  5
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  7
  6
  
    
import org.springframework.stereotype.Service;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/ProjectManager.java
    
  





  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.domain.Project;


  		




  4
  4
  
    

  		




  5
  
  
    

  		




  6
  5
  
    
import java.util.List;


  		




  7
  6
  
    

  		




  8
  7
  
    
/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/RequestManagerImpl.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service;


  		




  2
  2
  
    

  		




  3
  
  
    
import com.sun.org.apache.xpath.internal.operations.Bool;


  		




  4
  3
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  5
  4
  
    
import eu.dnetlib.goldoa.service.dao.RequestDAO;


  		




  6
  5
  
    
import eu.dnetlib.goldoa.service.utils.EmailUtils;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/ContactManagerImpl.java
    
  





  3
  3
  
    
import eu.dnetlib.goldoa.domain.Contact;


  		




  4
  4
  
    
import eu.dnetlib.goldoa.service.utils.MailLibrary;


  		




  5
  5
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  6
  
  
    
import org.springframework.beans.factory.annotation.Value;


  		




  7
  6
  
    
import org.springframework.stereotype.Service;


  		




  8
  7
  
    

  		




  9
  8
  
    
import javax.mail.MessagingException;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/PublisherManagerImpl.java
    
  





  3
  3
  
    

  		




  4
  4
  
    
import eu.dnetlib.goldoa.domain.Currency;


  		




  5
  5
  
    
import eu.dnetlib.goldoa.domain.Publisher;


  		




  
  6
  
    
import eu.dnetlib.goldoa.service.dao.PublisherDAO;


  		




  6
  7
  
    
import eu.dnetlib.goldoa.service.dao.UserDAO;


  		




  7
  
  
    
import eu.dnetlib.goldoa.service.dao.PublisherDAO;


  		




  8
  8
  
    
import org.apache.commons.codec.digest.DigestUtils;


  		




  9
  9
  
    
import org.apache.commons.logging.Log;


  		




  10
  10
  
    
import org.apache.commons.logging.LogFactory;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/OrganizationManagerImpl.java
    
  





  1
  1
  
    

  		




  2
  2
  
    
package eu.dnetlib.goldoa.service;


  		




  3
  3
  
    

  		




  4
  
  
    
import eu.dnetlib.goldoa.domain.Budget;


  		




  5
  4
  
    
import eu.dnetlib.goldoa.domain.Organization;


  		




  6
  5
  
    
import eu.dnetlib.goldoa.domain.OrganizationManagerException;


  		




  7
  
  
    
import eu.dnetlib.goldoa.domain.Vocabulary;


  		




  8
  
  
    
//import eu.dnetlib.goldoa.service.dao.BudgetDAO;


  		




  9
  6
  
    
import eu.dnetlib.goldoa.service.dao.OrganizationDAO;


  		




  10
  7
  
    
import org.apache.commons.codec.digest.DigestUtils;


  		




  11
  8
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  ......




  13
  10
  
    
import org.springframework.stereotype.Service;


  		




  14
  11
  
    
import org.springframework.transaction.annotation.Transactional;


  		




  15
  12
  
    

  		




  16
  
  
    
import java.util.ArrayList;


  		




  17
  13
  
    
import java.util.List;


  		




  18
  14
  
    

  		




  
  15
  
    
//import eu.dnetlib.goldoa.service.dao.BudgetDAO;


  		




  19
  16
  
    

  		




  
  17
  
    

  		




  20
  18
  
    
/**


  		




  21
  19
  
    
 * Created by antleb on 3/3/15.


  		




  22
  20
  
    
 */


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/InvoiceDAO.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  2
  2
  
    

  		




  3
  
  
    
import eu.dnetlib.goldoa.domain.Budget;


  		




  4
  3
  
    
import eu.dnetlib.goldoa.domain.File;


  		




  5
  4
  
    
import eu.dnetlib.goldoa.domain.Invoice;


  		




  6
  
  
    
import eu.dnetlib.goldoa.service.RequestManagerImpl;


  		




  7
  5
  
    
import org.apache.commons.io.IOUtils;


  		




  8
  6
  
    
import org.apache.commons.logging.Log;


  		




  9
  7
  
    
import org.apache.commons.logging.LogFactory;


  		




  10
  
  
    
import org.hibernate.Hibernate;


  		




  11
  8
  
    
import org.hibernate.criterion.Restrictions;


  		




  12
  9
  
    
import org.hibernate.type.StringType;


  		




  13
  10
  
    
import org.springframework.stereotype.Repository;


  		




  ......




  15
  12
  
    
import java.io.ByteArrayOutputStream;


  		




  16
  13
  
    
import java.io.IOException;


  		




  17
  14
  
    
import java.io.InputStream;


  		




  18
  
  
    
import java.math.BigInteger;


  		




  19
  15
  
    
import java.util.List;


  		




  20
  16
  
    

  		




  21
  17
  
    
/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/UserDAO.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  2
  2
  
    

  		




  3
  
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  4
  
  
    

  		




  
  3
  
    
import eu.dnetlib.goldoa.domain.AccountAction;


  		




  
  4
  
    
import eu.dnetlib.goldoa.domain.Role;


  		




  
  5
  
    
import eu.dnetlib.goldoa.domain.User;


  		




  
  6
  
    
import eu.dnetlib.goldoa.domain.UserRole;


  		




  5
  7
  
    
import org.apache.commons.codec.digest.DigestUtils;


  		




  6
  8
  
    
import org.apache.commons.logging.Log;


  		




  7
  9
  
    
import org.apache.commons.logging.LogFactory;


  		




  8
  
  
    
import org.hibernate.CacheMode;


  		




  9
  10
  
    
import org.hibernate.Criteria;


  		




  10
  11
  
    
import org.hibernate.criterion.Order;


  		




  11
  12
  
    
import org.hibernate.criterion.ProjectionList;


  		




  12
  13
  
    
import org.hibernate.criterion.Projections;


  		




  13
  14
  
    
import org.hibernate.criterion.Restrictions;


  		




  14
  
  
    
import org.hibernate.transform.AliasToBeanResultTransformer;


  		




  15
  15
  
    
import org.hibernate.transform.Transformers;


  		




  16
  16
  
    
import org.springframework.stereotype.Repository;


  		




  17
  17
  
    

  		




  18
  
  
    
import javax.persistence.Query;


  		




  19
  18
  
    
import java.math.BigInteger;


  		




  20
  19
  
    
import java.sql.Timestamp;


  		




  21
  
  
    
import java.util.ArrayList;


  		




  22
  20
  
    
import java.util.List;


  		




  23
  21
  
    

  		




  24
  22
  
    
/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/AbstractDao.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  2
  2
  
    

  		




  3
  3
  
    

  		




  4
  
  
    
import java.io.Serializable;


  		




  5
  
  
    
import java.lang.reflect.ParameterizedType;


  		




  6
  
  
    

  		




  7
  4
  
    
import org.hibernate.Criteria;


  		




  8
  5
  
    
import org.hibernate.Session;


  		




  9
  6
  
    
import org.hibernate.SessionFactory;


  		




  10
  7
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  11
  8
  
    

  		




  
  9
  
    
import java.io.Serializable;


  		




  
  10
  
    
import java.lang.reflect.ParameterizedType;


  		




  
  11
  
    

  		




  12
  12
  
    
public abstract class AbstractDao<PK extends Serializable, T> {


  		




  13
  13
  
    
    


  		




  14
  14
  
    
	@Autowired


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/FunderDAO.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.domain.Funder;


  		




  4
  
  
    
import eu.dnetlib.goldoa.domain.Vocabulary;


  		




  5
  4
  
    
import org.hibernate.criterion.MatchMode;


  		




  6
  5
  
    
import org.hibernate.criterion.Restrictions;


  		




  7
  6
  
    
import org.springframework.stereotype.Repository;


  		




  8
  7
  
    

  		




  9
  
  
    

  		




  10
  
  
    
import java.util.ArrayList;


  		




  11
  8
  
    
import java.util.List;


  		




  12
  9
  
    

  		




  13
  10
  
    
/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/OrganizationDAO.java
    
  





  1
  1
  
    

  		




  2
  2
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  3
  3
  
    

  		




  4
  
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  
  4
  
    
import eu.dnetlib.goldoa.domain.Affiliation;


  		




  
  5
  
    
import eu.dnetlib.goldoa.domain.Organization;


  		




  
  6
  
    
import eu.dnetlib.goldoa.domain.User;


  		




  5
  7
  
    
import org.hibernate.Criteria;


  		




  6
  8
  
    
import org.hibernate.criterion.MatchMode;


  		




  7
  9
  
    
import org.hibernate.criterion.Restrictions;


  		




  8
  
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  9
  
  
    
import org.springframework.jdbc.core.BatchPreparedStatementSetter;


  		




  10
  
  
    
import org.springframework.jdbc.core.JdbcTemplate;


  		




  11
  
  
    
import org.springframework.jdbc.core.PreparedStatementSetter;


  		




  12
  
  
    
import org.springframework.jdbc.core.RowMapper;


  		




  13
  10
  
    
import org.springframework.stereotype.Repository;


  		




  14
  11
  
    

  		




  15
  
  
    
import javax.sql.DataSource;


  		




  16
  
  
    
import java.sql.PreparedStatement;


  		




  17
  
  
    
import java.sql.ResultSet;


  		




  18
  
  
    
import java.sql.SQLException;


  		




  19
  
  
    
import java.sql.Types;


  		




  20
  12
  
    
import java.util.ArrayList;


  		




  21
  
  
    
import java.util.Arrays;


  		




  22
  13
  
    
import java.util.List;


  		




  23
  14
  
    

  		




  24
  15
  
    

  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/ProjectDAO.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  2
  2
  
    

  		




  3
  
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  
  3
  
    
import eu.dnetlib.goldoa.domain.Project;


  		




  4
  4
  
    
import org.hibernate.criterion.*;


  		




  5
  5
  
    
import org.hibernate.transform.Transformers;


  		




  6
  
  
    
import org.springframework.beans.factory.annotation.Value;


  		




  7
  6
  
    
import org.springframework.stereotype.Repository;


  		




  8
  7
  
    

  		




  9
  8
  
    
import java.util.ArrayList;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/HelpDAO.java
    
  





  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.domain.Help;


  		




  4
  4
  
    
import org.hibernate.criterion.Restrictions;


  		




  5
  
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  6
  
  
    
import org.springframework.jdbc.core.JdbcTemplate;


  		




  7
  
  
    
import org.springframework.jdbc.core.RowMapper;


  		




  8
  5
  
    
import org.springframework.stereotype.Repository;


  		




  9
  6
  
    

  		




  10
  
  
    
import javax.sql.DataSource;


  		




  11
  
  
    
import java.sql.ResultSet;


  		




  12
  
  
    
import java.sql.SQLException;


  		




  13
  
  
    
import java.sql.Types;


  		




  14
  7
  
    
import java.util.List;


  		




  15
  8
  
    

  		




  16
  9
  
    
/*


  		




  ......




  19
  12
  
    
@Repository


  		




  20
  13
  
    
public class HelpDAO extends  AbstractDao<String,Help>{


  		




  21
  14
  
    

  		




  22
  
  
    
	private final static String UPDATE_HELP = "update help set name=?, text=? where id=?";


  		




  23
  
  
    
	private final static String INSERT_HELP = "insert into help (name, text, id) values (?, ?, ?)";


  		




  24
  
  
    
	private final static String GET_BY_ID = "select id, name, text from help where id = ?";


  		




  25
  
  
    
	private final static String GET_ALL = "select id, name, text from help";


  		




  26
  
  
    
	private final static String DELETE = "delete from help where id = ?";


  		




  
  15
  
    
//	private final static String UPDATE_HELP = "update help set name=?, text=? where id=?";


  		




  
  16
  
    
//	private final static String INSERT_HELP = "insert into help (name, text, id) values (?, ?, ?)";


  		




  
  17
  
    
//	private final static String GET_BY_ID = "select id, name, text from help where id = ?";


  		




  
  18
  
    
//	private final static String GET_ALL = "select id, name, text from help";


  		




  
  19
  
    
//	private final static String DELETE = "delete from help where id = ?";


  		




  27
  20
  
    

  		




  28
  21
  
    

  		




  29
  22
  
    
	public Help saveHelp(Help help) {


  		




  ......




  32
  25
  
    
	}


  		




  33
  26
  
    

  		




  34
  27
  
    
	public Help getById(String id) {


  		




  35
  
  
    
        return (Help) createEntityCriteria().add(Restrictions.eq("id", id)).list().get(0);


  		




  
  28
  
    
		List<Help> res = createEntityCriteria().add(Restrictions.eq("id", id)).list();


  		




  
  29
  
    

  		




  
  30
  
    
		if (!res.isEmpty())


  		




  
  31
  
    
        	return res.get(0);


  		




  
  32
  
    
		else


  		




  
  33
  
    
			return null;


  		




  36
  34
  
    
    }


  		




  37
  35
  
    
    @SuppressWarnings("unchecked")


  		




  38
  36
  
    
	public List<Help> getAll() {


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/eligibility/OrganizationEligibilityManager.java
    
  





  3
  3
  
    
import eu.dnetlib.goldoa.domain.Budget;


  		




  4
  4
  
    
import eu.dnetlib.goldoa.domain.Eligibility;


  		




  5
  5
  
    
import eu.dnetlib.goldoa.domain.Organization;


  		




  6
  
  
    
import eu.dnetlib.goldoa.domain.OrganizationManagerException;


  		




  7
  6
  
    
import eu.dnetlib.goldoa.domain.Request;


  		




  8
  7
  
    
import eu.dnetlib.goldoa.service.EligibilityManager;


  		




  9
  8
  
    
import eu.dnetlib.goldoa.service.OrganizationManager;


  		




  10
  9
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  11
  
  
    
import org.springframework.beans.factory.annotation.Value;


  		




  12
  10
  
    
import org.springframework.stereotype.Component;


  		




  13
  
  
    
import org.springframework.stereotype.Service;


  		




  14
  11
  
    

  		




  15
  12
  
    
/*


  		




  16
  13
  
    
 * Created by antleb on 4/4/15.


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/Searchable.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service;


  		




  2
  2
  
    

  		




  3
  
  
    
import eu.dnetlib.goldoa.domain.Journal;


  		




  4
  
  
    
import eu.dnetlib.goldoa.domain.Vocabulary;


  		




  5
  
  
    

  		




  6
  3
  
    
import java.util.List;


  		




  7
  4
  
    

  		




  8
  5
  
    
/**


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/BudgetManagerImpl.java
    
  





  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.domain.Budget;


  		




  4
  4
  
    
import eu.dnetlib.goldoa.domain.Organization;


  		




  
  5
  
    
import eu.dnetlib.goldoa.domain.PersonManagerException;


  		




  5
  6
  
    
import eu.dnetlib.goldoa.domain.User;


  		




  6
  
  
    
import eu.dnetlib.goldoa.domain.PersonManagerException;


  		




  7
  7
  
    
import eu.dnetlib.goldoa.service.dao.BudgetDAO;


  		




  8
  8
  
    
import eu.dnetlib.goldoa.service.utils.EmailUtils;


  		




  9
  9
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/RequestDAO.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  2
  2
  
    

  		




  3
  3
  
    
import com.opencsv.CSVWriter;


  		




  4
  
  
    
import com.sun.org.apache.regexp.internal.RE;


  		




  5
  4
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  6
  
  
    
import eu.dnetlib.goldoa.domain.RequestPage;


  		




  7
  5
  
    
import eu.dnetlib.goldoa.service.EligibilityManager;


  		




  8
  6
  
    
import eu.dnetlib.goldoa.service.InvoiceManager;


  		




  9
  7
  
    
import org.apache.commons.codec.digest.DigestUtils;


  		




  ......




  12
  10
  
    
import org.apache.commons.logging.LogFactory;


  		




  13
  11
  
    
import org.hibernate.Criteria;


  		




  14
  12
  
    
import org.hibernate.Query;


  		




  15
  
  
    
import org.hibernate.criterion.*;


  		




  16
  
  
    
import org.hibernate.transform.AliasToBeanResultTransformer;


  		




  
  13
  
    
import org.hibernate.criterion.Restrictions;


  		




  
  14
  
    
import org.hibernate.type.StringType;


  		




  
  15
  
    
import org.hibernate.type.Type;


  		




  17
  16
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  18
  
  
    
import org.springframework.beans.factory.annotation.Qualifier;


  		




  19
  17
  
    
import org.springframework.stereotype.Repository;


  		




  20
  
  
    
import org.hibernate.type.Type;


  		




  
  18
  
    

  		




  21
  19
  
    
import java.io.ByteArrayOutputStream;


  		




  22
  20
  
    
import java.io.IOException;


  		




  23
  21
  
    
import java.io.InputStream;


  		




  24
  22
  
    
import java.io.StringWriter;


  		




  25
  23
  
    
import java.math.BigInteger;


  		




  26
  
  
    
import java.sql.*;


  		




  
  24
  
    
import java.sql.Timestamp;


  		




  27
  25
  
    
import java.text.SimpleDateFormat;


  		




  28
  26
  
    
import java.util.*;


  		




  29
  
  
    
import java.util.Date;


  		




  30
  
  
    
import org.hibernate.type.*;


  		




  31
  27
  
    

  		




  32
  28
  
    
/*


  		




  33
  29
  
    
 * Created by antleb on 3/30/15.


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/PublicationDAO.java
    
  





  1
  1
  
    

  		




  2
  2
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  3
  3
  
    

  		




  4
  
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  5
  
  
    
import eu.dnetlib.goldoa.service.PublicationManagerImpl;


  		




  6
  
  
    
import eu.dnetlib.goldoa.service.UserManagerImpl;


  		




  
  4
  
    
import eu.dnetlib.goldoa.domain.Author;


  		




  
  5
  
    
import eu.dnetlib.goldoa.domain.Publication;


  		




  7
  6
  
    
import org.apache.commons.codec.digest.DigestUtils;


  		




  8
  7
  
    
import org.apache.log4j.Logger;


  		




  9
  8
  
    
import org.hibernate.criterion.Restrictions;


  		




  10
  
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  11
  
  
    
import org.springframework.jdbc.core.BatchPreparedStatementSetter;


  		




  12
  9
  
    
import org.springframework.stereotype.Repository;


  		




  13
  10
  
    

  		




  14
  
  
    
import javax.sql.DataSource;


  		




  15
  11
  
    
import java.math.BigInteger;


  		




  16
  
  
    
import java.sql.PreparedStatement;


  		




  17
  
  
    
import java.sql.ResultSet;


  		




  18
  
  
    
import java.sql.SQLException;


  		




  19
  
  
    
import java.sql.Types;


  		




  20
  
  
    
import java.util.ArrayList;


  		




  21
  12
  
    
import java.util.List;


  		




  22
  13
  
    

  		




  23
  14
  
    
@Repository


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/dao/BudgetDAO.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.dao;


  		




  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  4
  
  
    
//import eu.dnetlib.goldoa.domain.BankAccount;


  		




  5
  4
  
    
import org.apache.commons.codec.digest.DigestUtils;


  		




  6
  5
  
    
import org.apache.commons.io.IOUtils;


  		




  7
  
  
    
import org.hibernate.Criteria;


  		




  8
  6
  
    
import org.hibernate.criterion.Order;


  		




  9
  7
  
    
import org.hibernate.criterion.Restrictions;


  		




  10
  8
  
    
import org.springframework.stereotype.Repository;


  		




  11
  9
  
    

  		




  12
  
  
    

  		




  13
  10
  
    
import java.io.ByteArrayOutputStream;


  		




  14
  11
  
    
import java.io.IOException;


  		




  15
  12
  
    
import java.io.InputStream;


  		




  ......




  19
  16
  
    
import java.util.List;


  		




  20
  17
  
    
import java.util.UUID;


  		




  21
  18
  
    

  		




  
  19
  
    
//import eu.dnetlib.goldoa.domain.BankAccount;


  		




  
  20
  
    

  		




  22
  21
  
    
/*


  		




  23
  22
  
    
 * Created by antleb on 4/2/15.


  		




  24
  23
  
    
*/


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/RequestManager.java
    
  





  2
  2
  
    

  		




  3
  3
  
    
//import eu.dnetlib.goldoa.domain.BankTransferReceipt;


  		




  4
  4
  
    
//import eu.dnetlib.goldoa.domain.CommentTemplate;


  		




  
  5
  
    

  		




  5
  6
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  
  7
  
    

  		




  
  8
  
    
import java.io.InputStream;


  		




  
  9
  
    
import java.math.BigInteger;


  		




  
  10
  
    
import java.util.Date;


  		




  
  11
  
    
import java.util.List;


  		




  
  12
  
    

  		




  6
  13
  
    
//import eu.dnetlib.goldoa.domain.RequestFilter;


  		




  7
  14
  
    
//import eu.dnetlib.goldoa.domain.RequestInfo;


  		




  8
  15
  
    
//import eu.dnetlib.goldoa.domain.RequestInfoPage;


  		




  ......




  10
  17
  
    
//import eu.dnetlib.goldoa.domain.RequestSort;


  		




  11
  18
  
    
//import eu.dnetlib.goldoa.domain.RequestSortOrder;


  		




  12
  19
  
    

  		




  13
  
  
    
import java.io.InputStream;


  		




  14
  
  
    
import java.math.BigInteger;


  		




  15
  
  
    
import java.util.Date;


  		




  16
  
  
    
import java.util.List;


  		




  17
  
  
    

  		




  18
  20
  
    
/**


  		




  19
  21
  
    
 * Created by antleb on 3/10/15.


  		




  20
  22
  
    
 */


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/UserManagerImpl.java
    
  





  2
  2
  
    

  		




  3
  3
  
    

  		




  4
  4
  
    
import eu.dnetlib.goldoa.domain.*;


  		




  5
  
  
    

  		




  6
  5
  
    
import eu.dnetlib.goldoa.service.dao.UserDAO;


  		




  7
  6
  
    
import eu.dnetlib.goldoa.service.utils.EmailUtils;


  		




  8
  7
  
    
import org.apache.commons.codec.digest.DigestUtils;


  		




  9
  8
  
    
import org.apache.commons.logging.Log;


  		




  10
  9
  
    
import org.apache.commons.logging.LogFactory;


  		




  11
  
  
    
import org.hibernate.Hibernate;


  		




  12
  10
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  13
  11
  
    
import org.springframework.stereotype.Service;


  		




  14
  12
  
    
import org.springframework.transaction.annotation.Transactional;


  		




  ......




  143
  141
  
    
	@Override


  		




  144
  142
  
    
	public User login(String email, String password) throws PersonManagerException {


  		




  145
  143
  
    

  		




  146
  
  
    
		if (userDAO.verifyLogin(email, password)) {


  		




  147
  
  
    
			User user = getByEmail(email);


  		




  148
  
  
    
			if (user.isActive())


  		




  149
  
  
    
				return user;


  		




  150
  
  
    
			else


  		




  151
  
  
    
				throw new PersonManagerException(PersonManagerException.ErrorCause.NOT_ACTIVATED);


  		




  152
  
  
    
		} else {


  		




  153
  
  
    
			throw new PersonManagerException(PersonManagerException.ErrorCause.WRONG_EMAIL_OR_PASSWORD);


  		




  
  144
  
    
		try {


  		




  
  145
  
    
			if (userDAO.verifyLogin(email, password)) {


  		




  
  146
  
    
				System.out.println("verified login");


  		




  
  147
  
    
				User user = getByEmail(email);


  		




  
  148
  
    
				if (user.isActive()) {


  		




  
  149
  
    
					System.out.println("user is active");


  		




  
  150
  
    
					return user;


  		




  
  151
  
    
				}


  		




  
  152
  
    
				else


  		




  
  153
  
    
					throw new PersonManagerException(PersonManagerException.ErrorCause.NOT_ACTIVATED);


  		




  
  154
  
    
			} else {


  		




  
  155
  
    
				throw new PersonManagerException(PersonManagerException.ErrorCause.WRONG_EMAIL_OR_PASSWORD);


  		




  
  156
  
    
			}


  		




  
  157
  
    
		} catch (PersonManagerException e) {


  		




  
  158
  
    
			throw e;


  		




  
  159
  
    
		} catch (Exception e) {


  		




  
  160
  
    
			log.error("Error logging in", e);


  		




  154
  161
  
    
		}


  		




  
  162
  
    
		return null;


  		




  155
  163
  
    
	}


  		




  156
  164
  
    

  		




  157
  165
  
    
	@Override


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/UserManager.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service;


  		




  2
  2
  
    

  		




  3
  
  
    
import eu.dnetlib.goldoa.domain.User;


  		




  4
  3
  
    
import eu.dnetlib.goldoa.domain.PersonManagerException;


  		




  5
  4
  
    
import eu.dnetlib.goldoa.domain.Role;


  		




  
  5
  
    
import eu.dnetlib.goldoa.domain.User;


  		




  6
  6
  
    

  		




  7
  7
  
    
import java.util.List;


  		




  8
  8
  
    

  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/stats/StatsManagerImpl.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.service.stats;


  		




  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.domain.Request;


  		




  4
  
  
    
import eu.dnetlib.goldoa.domain.PublicationType;


  		




  5
  
  
    
import eu.dnetlib.goldoa.domain.stats.Browse;


  		




  6
  
  
    
import eu.dnetlib.goldoa.domain.stats.DateSeries;


  		




  7
  
  
    
import eu.dnetlib.goldoa.domain.stats.MapData;


  		




  8
  
  
    
import eu.dnetlib.goldoa.domain.stats.Numbers;


  		




  9
  
  
    
import eu.dnetlib.goldoa.domain.stats.Quadruple;


  		




  10
  
  
    
import eu.dnetlib.goldoa.domain.stats.Series;


  		




  11
  
  
    
import eu.dnetlib.goldoa.domain.stats.Triple;


  		




  
  4
  
    
import eu.dnetlib.goldoa.domain.stats.*;


  		




  12
  5
  
    
import eu.dnetlib.goldoa.service.RequestManager;


  		




  13
  6
  
    
import org.apache.log4j.Logger;


  		




  14
  7
  
    
import org.hibernate.SessionFactory;


  		




  ......




  18
  11
  
    

  		




  19
  12
  
    
import java.text.ParseException;


  		




  20
  13
  
    
import java.text.SimpleDateFormat;


  		




  21
  
  
    
import java.util.ArrayList;


  		




  22
  
  
    
import java.util.Date;


  		




  23
  
  
    
import java.util.HashMap;


  		




  24
  
  
    
import java.util.List;


  		




  25
  
  
    
import java.util.Map;


  		




  
  14
  
    
import java.util.*;


  		




  26
  15
  
    

  		




  27
  16
  
    
/*


  		




  28
  17
  
    
 * Created by antleb on 11/19/15.


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/utils/EmailUtilsLogger.java
    
  





  4
  4
  
    
import org.aspectj.lang.annotation.Around;


  		




  5
  5
  
    
import org.aspectj.lang.annotation.Aspect;


  		




  6
  6
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  7
  
  
    
import org.springframework.beans.factory.annotation.Value;


  		




  8
  7
  
    
import org.springframework.stereotype.Component;


  		




  9
  8
  
    

  		




  10
  9
  
    
import javax.mail.MessagingException;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/utils/Scheduler.java
    
  





  2
  2
  
    

  		




  3
  3
  
    
import eu.dnetlib.goldoa.service.PublicationManager;


  		




  4
  4
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  5
  
  
    
import org.springframework.stereotype.Component;


  		




  6
  5
  
    

  		




  7
  6
  
    
import javax.annotation.PostConstruct;


  		




  8
  7
  
    
import javax.sql.DataSource;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/eligibility/ChainEligibilityManager.java
    
  





  3
  3
  
    
import eu.dnetlib.goldoa.domain.Eligibility;


  		




  4
  4
  
    
import eu.dnetlib.goldoa.domain.Request;


  		




  5
  5
  
    
import eu.dnetlib.goldoa.service.EligibilityManager;


  		




  6
  
  
    
import jdk.nashorn.internal.objects.annotations.Property;


  		




  7
  6
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  8
  7
  
    
import org.springframework.context.annotation.Primary;


  		




  9
  8
  
    
import org.springframework.stereotype.Component;


  		




  10
  
  
    
import org.springframework.stereotype.Service;


  		




  11
  9
  
    

  		




  12
  
  
    
import javax.annotation.Resource;


  		




  13
  10
  
    
import java.util.ArrayList;


  		




  14
  11
  
    
import java.util.List;


  		




  15
  12
  
    

  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/eligibility/AccountingEligibilityManager.java
    
  





  8
  8
  
    
import eu.dnetlib.goldoa.service.EligibilityManager;


  		




  9
  9
  
    
import eu.dnetlib.goldoa.service.dao.PublicationDAO;


  		




  10
  10
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  11
  
  
    
import org.springframework.beans.factory.annotation.Value;


  		




  12
  
  
    
import org.springframework.context.annotation.Bean;


  		




  13
  
  
    
import org.springframework.core.env.Environment;


  		




  14
  11
  
    
import org.springframework.stereotype.Component;


  		




  15
  
  
    
import org.springframework.stereotype.Service;


  		




  16
  12
  
    

  		




  17
  13
  
    
/*


  		




  18
  14
  
    
 * Created by antleb on 3/25/15.


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/service/eligibility/PublicationEligibilityManager.java
    
  





  3
  3
  
    
import eu.dnetlib.goldoa.domain.Eligibility;


  		




  4
  4
  
    
import eu.dnetlib.goldoa.domain.Request;


  		




  5
  5
  
    
import eu.dnetlib.goldoa.service.EligibilityManager;


  		




  6
  
  
    
import eu.dnetlib.goldoa.service.UserManager;


  		




  7
  
  
    
import eu.dnetlib.goldoa.service.PublicationManager;


  		




  8
  
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  9
  6
  
    
import org.springframework.stereotype.Component;


  		




  10
  
  
    
import org.springframework.stereotype.Service;


  		




  11
  7
  
    

  		




  12
  8
  
    
/*


  		




  13
  9
  
    
 * Created by antleb on 5/8/15.


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/PublisherDiscount.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import java.io.Serializable;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  
  4
  
    

  		




  4
  5
  
    
import javax.persistence.*;


  		




  5
  6
  
    

  		




  6
  7
  
    

  		




  ......




  11
  12
  
    
				joinColumns = @JoinColumn(name = "publisher")),


  		




  12
  13
  
    
		@AssociationOverride(name = "pk.organization",


  		




  13
  14
  
    
				joinColumns = @JoinColumn(name = "organization")) })


  		




  14
  
  
    
public class PublisherDiscount implements Serializable{


  		




  
  15
  
    
public class PublisherDiscount implements IsSerializable{


  		




  15
  16
  
    

  		




  16
  17
  
    
	private static final long serialVersionUID = 1L;


  		




  17
  18
  
    

  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/RequestCoFunder.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import java.io.Serializable;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  
  4
  
    

  		




  4
  5
  
    
import javax.persistence.*;


  		




  5
  6
  
    

  		




  6
  7
  
    

  		




  ......




  11
  12
  
    
				joinColumns = @JoinColumn(name = "funder")),


  		




  12
  13
  
    
		@AssociationOverride(name = "pk.request",


  		




  13
  14
  
    
				joinColumns = @JoinColumn(name = "request")) })


  		




  14
  
  
    
public class RequestCoFunder implements Serializable {


  		




  
  15
  
    
public class RequestCoFunder implements IsSerializable {


  		




  15
  16
  
    
	private static final long serialVersionUID = 1L;


  		




  16
  17
  
    

  		




  17
  18
  
    
	@EmbeddedId


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Identifier.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  3
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  
  4
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  4
  5
  
    

  		




  5
  
  
    
import java.io.Serializable;


  		




  
  6
  
    
import javax.persistence.*;


  		




  6
  7
  
    
import java.math.BigInteger;


  		




  7
  8
  
    
import java.util.ArrayList;


  		




  8
  9
  
    
import java.util.List;


  		




  9
  
  
    
import javax.persistence.*;


  		




  10
  10
  
    

  		




  11
  11
  
    

  		




  12
  12
  
    
/**


  		




  ......




  15
  15
  
    
 */


  		




  16
  16
  
    
@Entity


  		




  17
  17
  
    
@Table(name="identifier")


  		




  18
  
  
    
public class Identifier implements Serializable {


  		




  
  18
  
    
public class Identifier implements IsSerializable {


  		




  19
  19
  
    
	private static final long serialVersionUID = 1L;


  		




  20
  20
  
    

  		




  21
  21
  
    
	@Id


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Currency.java
    
  





  2
  2
  
    

  		




  3
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  4
  4
  
    

  		




  5
  
  
    
import java.util.HashMap;


  		




  6
  
  
    

  		




  7
  5
  
    
/**


  		




  8
  6
  
    
 * Created by antleb on 5/4/15.


  		




  9
  7
  
    
 */


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/UserRole.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  4
  
  
    
import org.hibernate.annotations.*;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  5
  4
  
    
import org.hibernate.annotations.Cache;


  		




  
  5
  
    
import org.hibernate.annotations.CacheConcurrencyStrategy;


  		




  6
  6
  
    

  		




  7
  
  
    
import java.io.Serializable;


  		




  8
  
  
    

  		




  9
  7
  
    
import javax.persistence.*;


  		




  10
  
  
    
import javax.persistence.Entity;


  		




  11
  
  
    
import javax.persistence.Table;


  		




  12
  8
  
    

  		




  13
  9
  
    
@Entity


  		




  14
  10
  
    
@Table(name="user_role")


  		




  ......




  18
  14
  
    
				joinColumns = @JoinColumn(name = "email")),


  		




  19
  15
  
    
		@AssociationOverride(name = "pk.role",


  		




  20
  16
  
    
				joinColumns = @JoinColumn(name = "id")) })


  		




  21
  
  
    
public class UserRole implements Serializable{


  		




  
  17
  
    
public class UserRole implements IsSerializable{


  		




  22
  18
  
    
	


  		




  23
  19
  
    
	private static final long serialVersionUID = 1L;


  		




  24
  20
  
    
	


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Project.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  3
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  4
  
  
    
import org.hibernate.annotations.*;


  		




  5
  
  
    
import org.hibernate.annotations.Cache;


  		




  
  4
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  6
  5
  
    

  		




  7
  
  
    
import java.io.Serializable;


  		




  8
  6
  
    
import javax.persistence.*;


  		




  9
  
  
    
import javax.persistence.CascadeType;


  		




  10
  
  
    
import javax.persistence.Entity;


  		




  11
  7
  
    
import java.sql.Timestamp;


  		




  12
  8
  
    
import java.util.ArrayList;


  		




  13
  9
  
    
import java.util.List;


  		




  ......




  18
  14
  
    
 * 


  		




  19
  15
  
    
 */


  		




  20
  16
  
    
@Entity


  		




  21
  
  
    
public class Project implements Serializable {


  		




  
  17
  
    
public class Project implements IsSerializable {


  		




  22
  18
  
    
	private static final long serialVersionUID = 1L;


  		




  23
  19
  
    
	@Id


  		




  24
  20
  
    
	@Column(columnDefinition = "text")


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/JournalDiscountPK.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  
  4
  
    

  		




  3
  5
  
    
import javax.persistence.ManyToOne;


  		




  4
  6
  
    
import java.io.Serializable;


  		




  5
  7
  
    

  		




  6
  8
  
    
/**


  		




  7
  9
  
    
 * Created by panagiotis on 24/1/2017.


  		




  8
  10
  
    
 */


  		




  9
  
  
    
public class JournalDiscountPK implements Serializable {


  		




  
  11
  
    
public class JournalDiscountPK implements IsSerializable, Serializable {


  		




  10
  12
  
    

  		




  11
  13
  
    
    private static final long serialVersionUID = 1L;


  		




  12
  14
  
    

  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Organization.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  3
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  4
  
  
    
import org.hibernate.annotations.*;


  		




  
  4
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  5
  5
  
    
import org.hibernate.annotations.Cache;


  		




  
  6
  
    
import org.hibernate.annotations.CacheConcurrencyStrategy;


  		




  6
  7
  
    

  		




  7
  
  
    
import java.io.Serializable;


  		




  
  8
  
    
import javax.persistence.*;


  		




  8
  9
  
    
import java.util.ArrayList;


  		




  9
  10
  
    
import java.util.List;


  		




  10
  11
  
    

  		




  11
  
  
    
import javax.persistence.*;


  		




  12
  
  
    
import javax.persistence.Entity;


  		




  13
  12
  
    

  		




  14
  
  
    

  		




  15
  13
  
    
@Entity


  		




  16
  14
  
    
@Cache(usage= CacheConcurrencyStrategy.READ_ONLY,region = "user")


  		




  17
  
  
    
public class Organization implements Serializable {


  		




  
  15
  
    
public class Organization implements IsSerializable {


  		




  18
  16
  
    
	private static final long serialVersionUID = 1L;


  		




  19
  17
  
    

  		




  20
  18
  
    
	@Id


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Budgetfile.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  4
  4
  
    

  		




  5
  
  
    
import java.io.Serializable;


  		




  6
  
  
    
import javax.persistence.*;


  		




  
  5
  
    
import javax.persistence.Column;


  		




  
  6
  
    
import javax.persistence.Entity;


  		




  
  7
  
    
import javax.persistence.Id;


  		




  7
  8
  
    

  		




  8
  9
  
    

  		




  9
  10
  
    
/**


  		




  ......




  11
  12
  
    
 * 


  		




  12
  13
  
    
 */


  		




  13
  14
  
    
@Entity


  		




  14
  
  
    
public class Budgetfile implements Serializable {


  		




  
  15
  
    
public class Budgetfile implements IsSerializable {


  		




  15
  16
  
    
	private static final long serialVersionUID = 1L;


  		




  16
  17
  
    

  		




  17
  18
  
    
	private byte[] content;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/HIbernateDomainConverter.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import com.fasterxml.jackson.core.type.TypeReference;


  		




  4
  
  
    
import com.fasterxml.jackson.databind.JavaType;


  		




  5
  
  
    
import com.fasterxml.jackson.databind.JsonNode;


  		




  6
  3
  
    
import com.fasterxml.jackson.databind.ObjectMapper;


  		




  7
  
  
    
import com.fasterxml.jackson.databind.node.ObjectNode;


  		




  8
  4
  
    
import com.fasterxml.jackson.databind.type.TypeFactory;


  		




  9
  5
  
    
import eu.dnetlib.goldoa.service.dao.UserDAO;


  		




  10
  
  
    

  		




  11
  6
  
    
import org.apache.commons.logging.Log;


  		




  12
  7
  
    
import org.apache.commons.logging.LogFactory;


  		




  13
  8
  
    
import org.aspectj.lang.ProceedingJoinPoint;


  		




  14
  
  
    
import org.aspectj.lang.Signature;


  		




  15
  9
  
    
import org.aspectj.lang.annotation.Around;


  		




  16
  10
  
    
import org.aspectj.lang.annotation.Aspect;


  		




  17
  11
  
    
import org.aspectj.lang.reflect.MethodSignature;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/AccountAction.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import java.io.Serializable;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  
  4
  
    

  		




  4
  5
  
    
import javax.persistence.*;


  		




  5
  6
  
    
import java.math.BigInteger;


  		




  6
  7
  
    
import java.sql.Timestamp;


  		




  ......




  12
  13
  
    
 */


  		




  13
  14
  
    
@Entity


  		




  14
  15
  
    
@Table(name="account_action")


  		




  15
  
  
    
public class AccountAction implements Serializable {


  		




  
  16
  
    
public class AccountAction implements IsSerializable {


  		




  16
  17
  
    
	private static final long serialVersionUID = 1L;


  		




  17
  18
  
    

  		




  18
  19
  
    
	@Id


  		




  19
  
  
    
	@Column(columnDefinition = "text")


  		




  
  20
  
    
	@Column


  		




  20
  21
  
    
	private BigInteger id;


  		




  21
  22
  
    
	


  		




  22
  23
  
    
	private Timestamp date;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/CommentTemplate.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import java.io.Serializable;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  
  4
  
    

  		




  4
  5
  
    
import javax.persistence.*;


  		




  5
  6
  
    

  		




  6
  7
  
    

  		




  ......




  9
  10
  
    
 * 


  		




  10
  11
  
    
 */


  		




  11
  12
  
    
@Entity


  		




  12
  
  
    
public class CommentTemplate implements Serializable {


  		




  
  13
  
    
public class CommentTemplate implements IsSerializable {


  		




  13
  14
  
    
	private static final long serialVersionUID = 1L;


  		




  14
  15
  
    

  		




  15
  16
  
    
	@Id


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Country.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import org.hibernate.annotations.*;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  4
  4
  
    
import org.hibernate.annotations.Cache;


  		




  
  5
  
    
import org.hibernate.annotations.CacheConcurrencyStrategy;


  		




  5
  6
  
    

  		




  6
  
  
    
import java.io.Serializable;


  		




  7
  
  
    
import javax.persistence.*;


  		




  
  7
  
    
import javax.persistence.Column;


  		




  8
  8
  
    
import javax.persistence.Entity;


  		




  
  9
  
    
import javax.persistence.Id;


  		




  9
  10
  
    

  		




  10
  11
  
    

  		




  11
  12
  
    
/**


  		




  ......




  14
  15
  
    
 */


  		




  15
  16
  
    
@Entity


  		




  16
  17
  
    
@Cache(usage= CacheConcurrencyStrategy.READ_WRITE,region = "user")


  		




  17
  
  
    
public class Country implements Serializable {


  		




  
  18
  
    
public class Country implements IsSerializable {


  		




  18
  19
  
    
	private static final long serialVersionUID = 1L;


  		




  19
  20
  
    
	@Id


  		




  20
  21
  
    
	@Column(columnDefinition = "text")


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Budget.java
    
  





  3
  3
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  4
  4
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  5
  5
  
    

  		




  6
  
  
    
import java.io.Serializable;


  		




  7
  6
  
    
import javax.persistence.*;


  		




  8
  
  
    

  		




  
  7
  
    
import java.sql.Timestamp;


  		




  9
  8
  
    
import java.util.ArrayList;


  		




  10
  9
  
    
import java.util.Date;


  		




  11
  10
  
    
import java.util.List;


  		




  12
  
  
    
import java.sql.Timestamp;


  		




  13
  11
  
    

  		




  14
  12
  
    
@Entity


  		




  15
  
  
    
public class Budget implements Serializable {


  		




  
  13
  
    
public class Budget implements IsSerializable {


  		




  16
  14
  
    
	private static final long serialVersionUID = 1L;


  		




  17
  15
  
    

  		




  18
  16
  
    
	public enum Status implements IsSerializable {


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Comment.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  3
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  
  4
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  4
  5
  
    

  		




  5
  
  
    
import java.io.Serializable;


  		




  6
  6
  
    
import javax.persistence.*;


  		




  7
  
  
    
import java.sql.Time;


  		




  8
  7
  
    
import java.sql.Timestamp;


  		




  9
  8
  
    
import java.util.ArrayList;


  		




  10
  
  
    
import java.util.Date;


  		




  11
  9
  
    
import java.util.List;


  		




  12
  10
  
    

  		




  13
  11
  
    

  		




  ......




  16
  14
  
    
 * 


  		




  17
  15
  
    
 */


  		




  18
  16
  
    
@Entity


  		




  19
  
  
    
public class Comment implements Serializable {


  		




  
  17
  
    
public class Comment implements IsSerializable {


  		




  20
  18
  
    
	private static final long serialVersionUID = 1L;


  		




  21
  19
  
    
	


  		




  22
  20
  
    
	@Column(columnDefinition = "text")


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Journal.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  4
  4
  
    

  		




  5
  
  
    
import java.io.Serializable;


  		




  
  5
  
    
import javax.persistence.*;


  		




  6
  6
  
    
import java.util.ArrayList;


  		




  7
  7
  
    
import java.util.List;


  		




  8
  8
  
    

  		




  9
  
  
    
import javax.persistence.*;


  		




  10
  9
  
    

  		




  11
  
  
    

  		




  12
  10
  
    
/**


  		




  13
  11
  
    
 * The persistent class for the journal database table.


  		




  14
  12
  
    
 * 


  		




  15
  13
  
    
 */


  		




  16
  14
  
    
@Entity


  		




  17
  15
  
    
@NamedQuery(name="Journal.findAll", query="SELECT j FROM Journal j")


  		




  18
  
  
    
public class Journal implements Serializable {


  		




  
  16
  
    
public class Journal implements IsSerializable {


  		




  19
  17
  
    
	private static final long serialVersionUID = 1L;


  		




  20
  18
  
    

  		




  21
  19
  
    
	@Id


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/File.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  
  
    
import java.io.Serializable;


  		




  4
  
  
    
import java.math.BigInteger;


  		




  5
  
  
    
import javax.persistence.*;


  		




  
  3
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  6
  4
  
    

  		




  
  5
  
    
import javax.persistence.Column;


  		




  
  6
  
    
import javax.persistence.Entity;


  		




  
  7
  
    
import javax.persistence.Id;


  		




  7
  8
  
    

  		




  
  9
  
    

  		




  8
  10
  
    
/**


  		




  9
  11
  
    
 * The persistent class for the file database table.


  		




  10
  12
  
    
 * 


  		




  11
  13
  
    
 */


  		




  12
  14
  
    
@Entity


  		




  13
  
  
    
public class File implements Serializable {


  		




  
  15
  
    
public class File implements IsSerializable {


  		




  14
  16
  
    
	private static final long serialVersionUID = 1L;


  		




  15
  17
  
    
	@Id


  		




  16
  18
  
    
	private String id;


  		












  

    
      modules/uoa-goldoa-service/branches/hibernate/src/main/java/eu/dnetlib/goldoa/domain/Affiliation.java
    
  





  1
  1
  
    
package eu.dnetlib.goldoa.domain;


  		




  2
  2
  
    

  		




  3
  3
  
    
import com.fasterxml.jackson.annotation.JsonBackReference;


  		




  4
  
  
    
import org.hibernate.annotations.*;


  		




  5
  
  
    
import org.hibernate.annotations.Cache;


  		




  
  4
  
    
import com.google.gwt.user.client.rpc.IsSerializable;


  		




  6
  5
  
    

  		




  7
  
  
    
import java.io.Serializable;


  		




  8
  6
  
    
import javax.persistence.*;


  		




  9
  
  
    
import javax.persistence.Entity;


  		




  10
  
  
    
import javax.persistence.Table;


  		




  11
  7
  
    
import java.sql.Timestamp;


  		




  12
  8
  
    
import java.util.ArrayList;


  		




  13
  9
  
    
import java.util.List;


  		




  14
  10
  
    

  		




  15
  
  
    

  		




  16
  11
  
    
@Entity


  		




  17
  12
  
    
@Table(name="Affiliation")


  		




  18
  
  
    
public class Affiliation implements Serializable {


  		




  
  13
  
    
public class Affiliation implements IsSerializable {


  		




  19
  14
  
    
	private static final long serialVersionUID = 1L;


  		




  20
  15
  
    

  		




  21
  16
  
    
	@Id


  		








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