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package eu.dnetlib.goldoa.service.dao;
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import com.opencsv.CSVWriter;
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import eu.dnetlib.goldoa.domain.*;
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import eu.dnetlib.goldoa.domain.Currency;
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import eu.dnetlib.goldoa.service.EligibilityManager;
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import eu.dnetlib.goldoa.service.InvoiceManager;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.hibernate.Criteria;
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import org.hibernate.Hibernate;
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import org.hibernate.Query;
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import org.hibernate.criterion.Restrictions;
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import org.hibernate.type.StringType;
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import org.hibernate.type.TextType;
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import org.hibernate.type.Type;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.stereotype.Repository;
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import java.io.ByteArrayOutputStream;
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import java.io.IOException;
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import java.io.InputStream;
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import java.io.StringWriter;
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import java.math.BigInteger;
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import java.sql.Timestamp;
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import java.text.ParseException;
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import java.text.SimpleDateFormat;
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import java.util.*;
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/*
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* Created by antleb on 3/30/15.
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*/
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@Repository
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public class RequestDAO extends AbstractDao<String,Request>{
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private Log logger = LogFactory.getLog(RequestDAO.class);
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private final static String GET_COMMENT_TEMPLATES = "select id, status, name, comment from commenttemplate where status=?";
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@Autowired
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private EligibilityManager eligibilityManager;
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@Autowired
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private InvoiceManager invoiceManager;
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public void saveRequest(final Request request) {
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if(request.getBankAccount()!=null){
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if(request.getBankAccount().getId() == null)
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request.getBankAccount().setId(getBankId());
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}
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if(request.getRequestCoFunders() !=null) {
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for (RequestCoFunder rc : request.getRequestCoFunders())
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rc.getPk().setRequest(request);
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}
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if ( getRequest(request.getId()) == null){
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Date date = new Date();
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request.setDate(new Timestamp(date.getTime()));
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persist(request);
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}
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//getSession().saveOrUpdate(request);
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Request persistened_request = (Request) getSession().merge(request);
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}
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public BigInteger getBankId() {
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return (BigInteger) getSession().createSQLQuery("select nextval('bank_id_seq') as id").list().get(0);
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}
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public List<RequestCoFunder> getCoFunders(final Request request) {
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return request.getRequestCoFunders();
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}
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@SuppressWarnings("unchecked")
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public Request getRequest(String requestId) {
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List<Request> r = createEntityCriteria().add(Restrictions.eq("id",requestId)).list();
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if(r.size() > 0){
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r.get(0).setEligibility(eligibilityManager.validate(r.get(0)));
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return r.get(0);
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}
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return null;
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}
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public void submitRequest(Request r) {
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if(r.getStatus() != Request.RequestStatus.APPROVED && r.getStatus() != Request.RequestStatus.ACCOUNTING_PROCESSING &&
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r.getStatus() != Request.RequestStatus.ACCOUNTING_PAID && r.getStatus() != Request.RequestStatus.CONDITIONALLY_APPROVED){
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r.setStatus(Request.RequestStatus.SUBMITTED);
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r.setSubmissiondate(new Timestamp(new Date().getTime()));
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saveRequest(r);
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}
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}
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public void approveRequest(String requestId, User user, String comment, String template) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.APPROVED);
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r.setApprovaldate(new Timestamp(new Date().getTime()));
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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public void conditionallyApproveRequest(String requestId, User user, String comment, String template) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.CONDITIONALLY_APPROVED);
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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private void saveComment(Request request, User user, String comment, String template) {
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String commentId = "portal::" + DigestUtils.md5Hex(comment + new Date());
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logger.debug("Comment : " + comment);
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Comment com = new Comment();
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com.setComment(comment);
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com.setId(commentId);
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com.setPerson(user);
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com.setTemplate(null);
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com.setDate(new Timestamp(new Date().getTime()));
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List<Comment> cms = request.getRequestComments();
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cms.add(com);
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saveRequest(request);
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}
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public void rejectRequest(String requestId, User user, String comment, String template) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.REJECTED);
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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public void processingRequest(String requestId, User user, String comment, String template) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.ACCOUNTING_PROCESSING);
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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public void paidRequest(String requestId, User user, String comment, String template, float apc_paid, float transfer_cost, float other_cost, Date datePaid) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.ACCOUNTING_PAID);
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r.setApcPaid(apc_paid);
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r.setOtherCost(other_cost);
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r.setTransferCost(transfer_cost);
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r.setDatePaid(new Timestamp(datePaid.getTime()));
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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public void paidLibraryRequest(String requestId, User user, String comment, String template,
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float apc_paid, float transfer_cost, float other_cost, Date datePaid) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.LIBRARY_FUND_PAID);
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r.setApcPaid(apc_paid);
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r.setTransferCost(transfer_cost);
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r.setOtherCost(other_cost);
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r.setDatePaid(new Timestamp(datePaid.getTime()));
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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public void paidPublisherRequest(String requestId, User user, String comment, String template,
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float apc_paid, float transfer_cost, float other_cost, Date datePaid) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.PUBLISHER_FUND_PAID);
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r.setApcPaid(apc_paid);
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r.setTransferCost(transfer_cost);
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r.setOtherCost(other_cost);
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r.setDatePaid(new Timestamp(datePaid.getTime()));
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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public void onHoldRequest(String requestId, User user, String comment, String template) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.ACCOUNTING_ON_HOLD);
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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public void deniedRequest(String requestId, User user, String comment, String template) {
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Request r = getRequest(requestId);
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r.setStatus(Request.RequestStatus.ACCOUNTING_DENIED);
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saveRequest(r);
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if (comment != null && !comment.isEmpty()) {
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saveComment(r, user, comment, template);
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}
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}
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@SuppressWarnings("unchecked")
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public List<Request> getForProject(String projectId) {
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return createEntityCriteria().add(Restrictions.eq("project.id",projectId)).list();
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}
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public RequestPage getForUser(String personId, Date fromDate, Date toDate, RequestSort requestSortBy, RequestSortOrder order, RequestFilter requestFilter, String term, Request.RequestStatus[] statusFilter, int from, int to) {
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return this.getRequestPage(personId, null, null, requestSortBy, order, requestFilter, term, getStatusFilter(statusFilter), from, to);
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}
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public RequestPage getForOrganization(List<String> organizationIds, Date fromDate, Date toDate, RequestSort requestSortBy, RequestSortOrder order, RequestFilter requestFilter, String term, Request.RequestStatus[] statusFilter, int from, int to) {
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return this.getRequestPage(null, organizationIds, null, requestSortBy, order, requestFilter, term, getStatusFilter(statusFilter), from, to);
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}
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public RequestPage getForPublisher(String publisherId, Date fromDate, Date toDate, RequestSort requestSortBy, RequestSortOrder order, RequestFilter requestFilter, String term, Request.RequestStatus[] statusFilter, int from, int to) {
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return this.getRequestPage(null, null, publisherId, requestSortBy, order, requestFilter, term, getStatusFilter(statusFilter), from, to);
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}
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public RequestPage getRequests(Date fromDate, Date toDate, RequestSort requestSortBy, RequestSortOrder order, RequestFilter requestFilter, String term, Request.RequestStatus[] statusFilter, int from, int to) {
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return this.getRequestPage(null, null, null, requestSortBy, order, requestFilter, term, getStatusFilter(statusFilter), from, to);
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}
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public RequestPage getRequests(Date fromDate, Date toDate, RequestSort requestSortBy, RequestSortOrder order, RequestFilter requestFilter, String term, Integer[] statusFilter, int from, int to) {
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return this.getRequestPage(null, null, null, requestSortBy, order, requestFilter, term, statusFilter, from, to);
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}
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public BigInteger getRequestId() {
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return (BigInteger) getSession().createSQLQuery("select nextval('request_id_seq') as id").list().get(0);
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}
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@SuppressWarnings("unchecked")
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public String getCSV(RequestSort requestSortBy, RequestSortOrder order, RequestFilter requestFilter, String term, Integer[] statuses) throws IOException {
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List<Object> args = new ArrayList<Object>();
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List<Type> types = new ArrayList<>();
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String requestQuery = this.getQuery(null, null, null, requestSortBy, order, requestFilter, term, statuses, args, types);
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String query = "select r.id as rid, r.status, r.date, u.firstname, u.lastname, o.name as organization," +
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" c.name as country, p.id as pid, p.acronym, p.startdate, p.enddate, p.scientificarea, " +
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"pub.title, pub.type, j.title as journal,j.issn as issn,(case when jp.id is not null then jp.name else mp.name end) as publisher, " +
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" r.approvaldate as approvaldate, r.apc as apc,r.currency as currency,r.datepaid, r.apcpaid, r.transfercost, " +
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" r.othercost, comment.comment as comment, " +
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" pub.license as license , pub.doi as doi , pub.repository as repository , f.identifiers as identifiers " +
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"from (" + requestQuery + ") r " +
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"left join \"user\" u on r.researcher = u.email " +
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"left join project p on r.project=p.id " +
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"left join publication pub on r.publication=pub.id " +
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"left join (select publication,array_to_string ( array_agg(concat_ws('#', type, value)),'@') as identifiers" +
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" from publication_identifier pi, identifier i " +
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" where pi.identifier = i.id" +
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" group by pi.publication" +
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" ) as f on r.publication = f.publication " +
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"left join journal j on j.id=r.journal " +
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"left join publisher jp on j.publisher=jp.id " +
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"left join publisher mp on mp.id=r.publisher " +
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"left join organization o on o.id=r.organization " +
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"left join country c on c.id=o.country " +
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"left join (select rid , comments[1] as comment " +
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" from (select rid, array_agg(comments) as comments" +
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" from (select rc.request as rid, c.comment as comments " +
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" from comment c " +
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" join request_comment rc on rc.comment=c.id " +
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" join request r on r.id=rc.request " +
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" and r.status = 8 order by rid, c.date desc" +
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" ) foo " +
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" group by rid" +
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" ) bar order by rid \n" +
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" ) as comment on r.id=comment.rid";
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List<String[]> requests = new ArrayList<>();
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Type[] t = new Type[types.size()];
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t = types.toArray(t);
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List<Object[]> resultSet = getSession().createSQLQuery(query)
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.setParameters(args.toArray(), t).list();
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for(Object rs[] : resultSet){
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String[] objs = new String[28];
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objs[0] = rs[0].toString();
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objs[1] = String.valueOf(Request.RequestStatus.forStatus(Integer.parseInt(rs[1].toString())));
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objs[2] = rs[2]!=null?new SimpleDateFormat("yyyy/MM/dd").format(rs[2]):null;
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objs[3] = rs[3]!=null?rs[3].toString():null;
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objs[4] = rs[4]!=null?rs[4].toString():null;
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objs[5] = rs[5]!=null?rs[5].toString():null;
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objs[6] = rs[6]!=null?rs[6].toString():null;
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objs[7] = rs[7]!=null?rs[7].toString().split("::")[1]:null;
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objs[8] = rs[8]!=null?rs[8].toString():null;
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objs[9] = rs[9]!=null?new SimpleDateFormat("yyyy/MM/dd").format(rs[9]):null;
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objs[10] = rs[10]!=null?new SimpleDateFormat("yyyy/MM/dd").format(rs[10]):null;
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objs[11] = rs[11]!=null?rs[11].toString():null;
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objs[12] = rs[12]!=null?rs[12].toString():null;
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objs[13] = rs[13]!=null?rs[13].toString():null;
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objs[14] = rs[14]!=null?rs[14].toString():null;
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objs[15] = rs[15]!=null?rs[15].toString():null;
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objs[16] = rs[16]!=null?rs[16].toString():null;
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objs[17] = rs[17]!=null?new SimpleDateFormat("yyyy/MM/dd").format(rs[17]):null;
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objs[18] = rs[18]!=null?Float.toString(Float.parseFloat(rs[18].toString())):null;
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objs[19] = rs[19]!=null?rs[19].toString():null;
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objs[20] = rs[20]!=null?new SimpleDateFormat("yyyy/MM/dd").format(rs[20]):null;
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objs[21] = rs[21]!=null?rs[21].toString() + "":null;
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objs[22] = rs[22]!=null?rs[22].toString() + "":null;
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objs[23] = rs[23]!=null?rs[23].toString() + "":null;
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objs[24] = rs[24]!=null?rs[24].toString():null;
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objs[25] = rs[25]!=null?rs[25].toString():null;
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objs[26] = rs[26]!=null?"Doi: " + rs[26].toString() + ";":"";
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objs[27] = rs[27]!=null?rs[27].toString():null;
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|
321
|
|
|
322
|
|
|
323
|
String[] identifiers = rs[28]!=null?rs[28].toString().split("@"):null;
|
|
324
|
|
|
325
|
if (identifiers != null){
|
|
326
|
for(String identifier : identifiers){
|
|
327
|
String[] type_values = identifier.split("#");
|
|
328
|
String type = type_values[0];
|
|
329
|
String value = type_values[1];
|
|
330
|
objs[26] += type + ":" + value;
|
|
331
|
}
|
|
332
|
}
|
|
333
|
requests.add(objs);
|
|
334
|
}
|
|
335
|
|
|
336
|
StringWriter sw = new StringWriter();
|
|
337
|
CSVWriter csvWriter = new CSVWriter(sw);
|
|
338
|
|
|
339
|
csvWriter.writeNext(new String[]{"id", "Status", "Submission Date", "Firstname", "Lastname", "Organization",
|
|
340
|
"Country", "Project id", "Acronym", "Start Date", "End Date", "Scientific Area", "Title", "Type",
|
|
341
|
"Journal","Journal ISSN", "Publisher", "Date Approved", "APC requested", "Currency", "Date Paid", "APC paid",
|
|
342
|
"Transfer Cost", "Other Expenses", "Rejection Reason", "License" , "Identifiers", "Repository"}, false);
|
|
343
|
csvWriter.writeAll(requests, false);
|
|
344
|
|
|
345
|
csvWriter.close();
|
|
346
|
sw.close();
|
|
347
|
|
|
348
|
return sw.toString();
|
|
349
|
}
|
|
350
|
|
|
351
|
@SuppressWarnings("unchecked")
|
|
352
|
private RequestPage getRequestPage(String personId, List<String> organizationIds, String publisherId,
|
|
353
|
RequestSort requestSortBy, RequestSortOrder order, RequestFilter requestFilter,
|
|
354
|
String term, Integer[] statusFilterCodes, int from, int to) {
|
|
355
|
RequestPage page = new RequestPage();
|
|
356
|
List<Object> args = new ArrayList<Object>();
|
|
357
|
List<Type> types = new ArrayList<>();
|
|
358
|
String query = getQuery(personId, organizationIds, publisherId, requestSortBy, order,
|
|
359
|
requestFilter, term, statusFilterCodes, args, types);
|
|
360
|
|
|
361
|
Type[] t = new Type[types.size()];
|
|
362
|
t = types.toArray(t);
|
|
363
|
|
|
364
|
page.setRequests(getSession().createSQLQuery(applyPaging(query, from, to))
|
|
365
|
.addEntity(Request.class)
|
|
366
|
.setParameters(args.toArray(),t)
|
|
367
|
.list());
|
|
368
|
|
|
369
|
BigInteger bi = (BigInteger) getSession().createSQLQuery(getCountQuery(query))
|
|
370
|
.setParameters(args.toArray(),t)
|
|
371
|
.list().get(0);
|
|
372
|
page.setTotal(bi.intValue());
|
|
373
|
page.setFrom(from);
|
|
374
|
page.setTo(to);
|
|
375
|
|
|
376
|
return page;
|
|
377
|
}
|
|
378
|
|
|
379
|
private String getCountQuery(String query) {
|
|
380
|
StringBuilder sb = new StringBuilder();
|
|
381
|
|
|
382
|
sb.append("select count(*) from (").append(query).append(") foo");
|
|
383
|
|
|
384
|
return sb.toString();
|
|
385
|
}
|
|
386
|
|
|
387
|
private String getQuery(String email, List<String> organizationIds, String publisherId, RequestSort requestSortBy, RequestSortOrder order,
|
|
388
|
RequestFilter requestFilter, String term, Integer[] statusFilterCodes, List<Object> args, List<Type> types) {
|
|
389
|
Map<String, String> joins = new HashMap<String, String>();
|
|
390
|
List<String> whereClauses = new ArrayList<String>();
|
|
391
|
List<Object> whereArgs = new ArrayList<Object>();
|
|
392
|
List<Type> whereTypes = new ArrayList<>();
|
|
393
|
|
|
394
|
String orderBy = null;
|
|
395
|
|
|
396
|
if (term != null) {
|
|
397
|
if (requestFilter != null) {
|
|
398
|
switch (requestFilter) {
|
|
399
|
case ID:
|
|
400
|
whereClauses.add("(r.id like ? )");
|
|
401
|
whereArgs.add("%" + term + "%");
|
|
402
|
types.add(StringType.INSTANCE);
|
|
403
|
break;
|
|
404
|
case USER:
|
|
405
|
joins.put("user", " join \"user\" u on u.email=r.user and (lower(u.firstname) like lower(?) or lower(u.initials) like lower(?) or lower(u.lastname) like lower(?)) ");
|
|
406
|
args.add("%" + term + "%");
|
|
407
|
args.add("%" + term + "%");
|
|
408
|
args.add("%" + term + "%");
|
|
409
|
types.add(StringType.INSTANCE);
|
|
410
|
types.add(StringType.INSTANCE);
|
|
411
|
types.add(StringType.INSTANCE);
|
|
412
|
break;
|
|
413
|
case RESEARCHER:
|
|
414
|
joins.put("researcher", " join \"user\" res on res.email=r.researcher and (lower(res.firstname) like lower(?) or lower(res.initials) like lower(?) or lower(res.lastname) like lower(?)) ");
|
|
415
|
args.add("%" + term + "%");
|
|
416
|
args.add("%" + term + "%");
|
|
417
|
args.add("%" + term + "%");
|
|
418
|
types.add(StringType.INSTANCE);
|
|
419
|
types.add(StringType.INSTANCE);
|
|
420
|
types.add(StringType.INSTANCE);
|
|
421
|
break;
|
|
422
|
case PROJECT:
|
|
423
|
joins.put("project", " join project proj on proj.id=r.project and (lower(proj.acronym) like lower(?) or lower(proj.title) like lower(?) or lower(proj.grant) like lower(?)) ");
|
|
424
|
args.add("%" + term + "%");
|
|
425
|
args.add("%" + term + "%");
|
|
426
|
args.add("%" + term + "%");
|
|
427
|
types.add(StringType.INSTANCE);
|
|
428
|
types.add(StringType.INSTANCE);
|
|
429
|
types.add(StringType.INSTANCE);
|
|
430
|
break;
|
|
431
|
case PUBLICATION:
|
|
432
|
joins.put("publication", " join publication pub on pub.id=r.publication and (lower(pub.title) like lower(?)) ");
|
|
433
|
args.add("%" + term + "%");
|
|
434
|
types.add(StringType.INSTANCE);
|
|
435
|
break;
|
|
436
|
case JOURNAL:
|
|
437
|
joins.put("journal", " join journal j on j.id=r.journal and (lower(j.title) like lower(?)) ");
|
|
438
|
args.add("%" + term + "%");
|
|
439
|
types.add(StringType.INSTANCE);
|
|
440
|
break;
|
|
441
|
case PUBLISHER:
|
|
442
|
joins.put("publisher", " join publisher publ on publ.id=r.publisher and (lower(publ.name) like lower(?)) ");
|
|
443
|
args.add("%" + term + "%");
|
|
444
|
types.add(StringType.INSTANCE);
|
|
445
|
break;
|
|
446
|
case INVOICE:
|
|
447
|
joins.put("invoice", "join invoice i on i.id=r.invoice and (lower(i.number) like lower(?) or lower(alternativeid) like lower(?))");
|
|
448
|
args.add("%" + term + "%");
|
|
449
|
args.add("%" + term + "%");
|
|
450
|
types.add(StringType.INSTANCE);
|
|
451
|
types.add(StringType.INSTANCE);
|
|
452
|
break;
|
|
453
|
}
|
|
454
|
} else {
|
|
455
|
whereClauses.add("(r.id like ? )");
|
|
456
|
whereArgs.add("%" + term + "%");
|
|
457
|
types.add(StringType.INSTANCE);
|
|
458
|
|
|
459
|
joins.put("user", " left join \"user\" u on u.email=r.user ");
|
|
460
|
whereClauses.add("(lower(u.firstname) like lower(?) or lower(u.initials) like lower(?) or lower(u.lastname) like lower(?))");
|
|
461
|
whereArgs.add("%" + term + "%");
|
|
462
|
whereArgs.add("%" + term + "%");
|
|
463
|
whereArgs.add("%" + term + "%");
|
|
464
|
whereTypes.add(StringType.INSTANCE);
|
|
465
|
whereTypes.add(StringType.INSTANCE);
|
|
466
|
whereTypes.add(StringType.INSTANCE);
|
|
467
|
joins.put("researcher", " left join \"user\" res on res.email=r.researcher ");
|
|
468
|
whereClauses.add("(lower(res.firstname) like lower(?) or lower(res.initials) like lower(?) or lower(res.lastname) like lower(?))");
|
|
469
|
whereArgs.add("%" + term + "%");
|
|
470
|
whereArgs.add("%" + term + "%");
|
|
471
|
whereArgs.add("%" + term + "%");
|
|
472
|
whereTypes.add(StringType.INSTANCE);
|
|
473
|
whereTypes.add(StringType.INSTANCE);
|
|
474
|
whereTypes.add(StringType.INSTANCE);
|
|
475
|
joins.put("project", " left join project proj on proj.id=r.project ");
|
|
476
|
whereClauses.add("(lower(proj.acronym) like lower(?) or lower(proj.title) like lower(?) or lower(proj.grant) like lower(?))");
|
|
477
|
whereArgs.add("%" + term + "%");
|
|
478
|
whereArgs.add("%" + term + "%");
|
|
479
|
whereArgs.add("%" + term + "%");
|
|
480
|
whereTypes.add(StringType.INSTANCE);
|
|
481
|
whereTypes.add(StringType.INSTANCE);
|
|
482
|
whereTypes.add(StringType.INSTANCE);
|
|
483
|
joins.put("publication", " left join publication pub on pub.id=r.publication ");
|
|
484
|
whereClauses.add("(lower(pub.title) like lower(?))");
|
|
485
|
whereArgs.add("%" + term + "%");
|
|
486
|
whereTypes.add(StringType.INSTANCE);
|
|
487
|
joins.put("journal", " left join journal j on j.id=r.journal ");
|
|
488
|
whereClauses.add("(lower(j.title) like lower(?))");
|
|
489
|
whereArgs.add("%" + term + "%");
|
|
490
|
whereTypes.add(StringType.INSTANCE);
|
|
491
|
joins.put("publisher", " left join publisher publ on publ.id=r.publisher ");
|
|
492
|
whereClauses.add("(lower(publ.name) like lower(?))");
|
|
493
|
whereArgs.add("%" + term + "%");
|
|
494
|
whereTypes.add(StringType.INSTANCE);
|
|
495
|
joins.put("invoice", " left join invoice i on i.id=r.invoice ");
|
|
496
|
whereClauses.add("(lower(i.number) like lower(?) or lower(alternativeid) like lower(?))");
|
|
497
|
whereArgs.add("%" + term + "%");
|
|
498
|
whereArgs.add("%" + term + "%");
|
|
499
|
whereTypes.add(StringType.INSTANCE);
|
|
500
|
whereTypes.add(StringType.INSTANCE);
|
|
501
|
}
|
|
502
|
|
|
503
|
}
|
|
504
|
|
|
505
|
if (requestSortBy != null) {
|
|
506
|
switch (requestSortBy) {
|
|
507
|
case DATE:
|
|
508
|
orderBy = " r.date ";
|
|
509
|
break;
|
|
510
|
case FUNDING_REQUESTED:
|
|
511
|
orderBy = " r.fundingrequested ";
|
|
512
|
break;
|
|
513
|
case USER:
|
|
514
|
if (joins.get("user") == null)
|
|
515
|
joins.put("user", " left join \"user\" u on u.email=r.user ");
|
|
516
|
|
|
517
|
orderBy = " u.firstname, u.initials, u.lastname ";
|
|
518
|
break;
|
|
519
|
case PUBLICATION:
|
|
520
|
if (joins.get("publication") == null)
|
|
521
|
joins.put("publication", " left join publication pub on r.publication=pub.id ");
|
|
522
|
|
|
523
|
orderBy = " pub.title ";
|
|
524
|
break;
|
|
525
|
case RESEARCHER:
|
|
526
|
if (joins.get("researcher") == null)
|
|
527
|
joins.put("researcher", " left join \"user\" res on res.email=r.researcher ");
|
|
528
|
|
|
529
|
orderBy = " res.firstname, res.initials, res.lastname ";
|
|
530
|
break;
|
|
531
|
case PROJECT:
|
|
532
|
if (joins.get("project") == null)
|
|
533
|
joins.put("project", " left join project proj on proj.id=r.project ");
|
|
534
|
|
|
535
|
orderBy = " proj.acronym ";
|
|
536
|
break;
|
|
537
|
case JOURNAL:
|
|
538
|
if (joins.get("journal") == null)
|
|
539
|
joins.put("journal", " left join journal j on j.id=r.journal ");
|
|
540
|
|
|
541
|
orderBy = " j.title ";
|
|
542
|
break;
|
|
543
|
case PUBLISHER:
|
|
544
|
if (joins.get("publisher") == null)
|
|
545
|
joins.put("publisher", " left join publisher publ on publ.id=r.publisher ");
|
|
546
|
|
|
547
|
orderBy = " publ.name ";
|
|
548
|
break;
|
|
549
|
case STATUS:
|
|
550
|
default:
|
|
551
|
orderBy = " r.status ";
|
|
552
|
break;
|
|
553
|
}
|
|
554
|
}
|
|
555
|
|
|
556
|
//TODO fix bank fields and publisher_email
|
|
557
|
//StringBuilder sb = new StringBuilder("select r.id, r.\"user\", r.date, r.researcher, r.organization, r.project, r.publication, r.journal, r.publisher, r.publisher_email, r.budget, r.invoice, r.apc, r.discount, r.projectparticipation, r.fundingrequested, r.currency, r.bank_name, r.bank_address, r.bank_code, r.bank_holder, r.bank_iban, r.apc_paid, r.transfer_cost, r.other_cost, r.date_paid, r.submissiondate, r.approvaldate, r.status from request r ");
|
|
558
|
StringBuilder sb = new StringBuilder("select r.id as id, " +
|
|
559
|
"r.\"user\" as \"user\", r.date as date, r.researcher as researcher, r.organization as organization, " +
|
|
560
|
"r.project as project, r.publication as publication, r.journal as journal, r.publisher as publisher, " +
|
|
561
|
"r.budget as budget, r.invoice as invoice , r.apc as apc, r.discount as discount, " +
|
|
562
|
"r.projectparticipation as projectparticipation, r.fundingrequested as fundingrequested, r.currency as currency, " +
|
|
563
|
"r.apcPaid as apcPaid, r.transferCost as transferCost, r.otherCost as otherCost, r.datePaid as datePaid, " +
|
|
564
|
"r.submissiondate as submissiondate, r.approvaldate as approvaldate, r.status as status ," +
|
|
565
|
"r.bankAccount as bankAccount , r.bankTransferReceipt as bankTransferReceipt ," +
|
|
566
|
"r.publisher_email as publisher_email from request r ");
|
|
567
|
for (String join : joins.values())
|
|
568
|
sb.append(" ").append(join).append(" ");
|
|
569
|
|
|
570
|
|
|
571
|
sb.append(" where ");
|
|
572
|
|
|
573
|
if (email != null) {
|
|
574
|
sb.append("r.\"user\"=? ");
|
|
575
|
|
|
576
|
args.add(email);
|
|
577
|
types.add(StringType.INSTANCE);
|
|
578
|
} else if (organizationIds != null) {
|
|
579
|
sb.append("(");
|
|
580
|
|
|
581
|
for (int i = 0; i < organizationIds.size(); i++) {
|
|
582
|
if (i > 0)
|
|
583
|
sb.append(" or ");
|
|
584
|
|
|
585
|
sb.append(" r.organization=? ");
|
|
586
|
|
|
587
|
args.add(organizationIds.get(i));
|
|
588
|
types.add(StringType.INSTANCE);
|
|
589
|
}
|
|
590
|
|
|
591
|
sb.append(")");
|
|
592
|
|
|
593
|
} else if (publisherId != null) {
|
|
594
|
|
|
595
|
if (joins.get("journal") == null) {
|
|
596
|
sb.delete(sb.lastIndexOf("where"), sb.length());
|
|
597
|
sb.append(" left join journal j on j.id=r.journal ");
|
|
598
|
sb.append(" where ");
|
|
599
|
}
|
|
600
|
|
|
601
|
sb.append("(r.publisher=? or j.publisher=?)");
|
|
602
|
|
|
603
|
args.add(publisherId);
|
|
604
|
types.add(StringType.INSTANCE);
|
|
605
|
args.add(publisherId);
|
|
606
|
types.add(StringType.INSTANCE);
|
|
607
|
}
|
|
608
|
|
|
609
|
if (statusFilterCodes != null) {
|
|
610
|
StringBuilder ssb = new StringBuilder();
|
|
611
|
|
|
612
|
for (Integer code:statusFilterCodes) {
|
|
613
|
String clause;
|
|
614
|
|
|
615
|
switch (code) {
|
|
616
|
default:
|
|
617
|
clause = " (r.status = " + code + ")";
|
|
618
|
break;
|
|
619
|
}
|
|
620
|
|
|
621
|
ssb.append(ssb.length()==0?clause:" or " + clause);
|
|
622
|
}
|
|
623
|
|
|
624
|
if (sb.toString().trim().endsWith("where"))
|
|
625
|
sb.append("(").append(ssb.toString()).append(")");
|
|
626
|
else
|
|
627
|
sb.append(" and ").append("(").append(ssb.toString()).append(")");
|
|
628
|
}
|
|
629
|
|
|
630
|
if (whereClauses.size() > 0) {
|
|
631
|
if (!sb.toString().trim().endsWith("where"))
|
|
632
|
sb.append(" and ");
|
|
633
|
sb.append("(");
|
|
634
|
|
|
635
|
for (String clause : whereClauses) {
|
|
636
|
sb.append(clause);
|
|
637
|
sb.append(" or ");
|
|
638
|
}
|
|
639
|
|
|
640
|
sb.delete(sb.lastIndexOf("or"), sb.length());
|
|
641
|
sb.append(") ");
|
|
642
|
|
|
643
|
args.addAll(whereArgs);
|
|
644
|
types.addAll(whereTypes);
|
|
645
|
}
|
|
646
|
|
|
647
|
if (sb.toString().trim().endsWith("where"))
|
|
648
|
sb.delete(sb.lastIndexOf("where"), sb.length());
|
|
649
|
|
|
650
|
if (orderBy != null) {
|
|
651
|
sb.append(" order by ").append(orderBy);
|
|
652
|
|
|
653
|
if (order == RequestSortOrder.ASCENDING)
|
|
654
|
sb.append(" asc");
|
|
655
|
else
|
|
656
|
sb.append(" desc");
|
|
657
|
}
|
|
658
|
|
|
659
|
return sb.toString();
|
|
660
|
}
|
|
661
|
|
|
662
|
private String applyPaging(String query, int from, int to) {
|
|
663
|
StringBuilder sb = new StringBuilder(query);
|
|
664
|
|
|
665
|
if (from > 0 || to > 0) {
|
|
666
|
sb.append(" limit ").append(to - from + 1);
|
|
667
|
sb.append(" offset ").append(from);
|
|
668
|
}
|
|
669
|
|
|
670
|
return sb.toString();
|
|
671
|
}
|
|
672
|
|
|
673
|
private Integer[] getStatusFilter(Request.RequestStatus[] statuses) {
|
|
674
|
if (statuses == null)
|
|
675
|
return null;
|
|
676
|
else {
|
|
677
|
Integer[] res = new Integer[statuses.length];
|
|
678
|
|
|
679
|
for (int i = 0; i < statuses.length; i++)
|
|
680
|
res[i] = statuses[i].getCode();
|
|
681
|
|
|
682
|
return res;
|
|
683
|
}
|
|
684
|
}
|
|
685
|
|
|
686
|
public List<Comment> getComments(String id) {
|
|
687
|
return getRequest(id).getRequestComments();
|
|
688
|
}
|
|
689
|
|
|
690
|
public void uploadBankTransferReceipt(final String requestid, final String contentType, InputStream inputStream) {
|
|
691
|
try {
|
|
692
|
final ByteArrayOutputStream baos = new ByteArrayOutputStream();
|
|
693
|
Request r = getRequest(requestid);
|
|
694
|
|
|
695
|
IOUtils.copy(inputStream, baos);
|
|
696
|
IOUtils.closeQuietly(baos);
|
|
697
|
r.setBankTransferReceipt(new BankTransferReceipt(contentType,baos.toByteArray()));
|
|
698
|
saveRequest(r);
|
|
699
|
} catch (Exception e) {
|
|
700
|
e.printStackTrace();
|
|
701
|
}
|
|
702
|
}
|
|
703
|
|
|
704
|
public BankTransferReceipt downloadBankTransferReceipt(String requestId) {
|
|
705
|
Request r = getRequest(requestId);
|
|
706
|
return r.getBankTransferReceipt();
|
|
707
|
}
|
|
708
|
|
|
709
|
@SuppressWarnings("unchecked")
|
|
710
|
public List<CommentTemplate> getCommentTemplates(Request.RequestStatus requestStatus) {
|
|
711
|
Criteria cr = getSession().createCriteria(CommentTemplate.class);
|
|
712
|
return cr.list();
|
|
713
|
}
|
|
714
|
|
|
715
|
public BigInteger getActiveNumber() {
|
|
716
|
|
|
717
|
String NUMBERS_REQUESTS = "select count(*) from request r where r.status in (" + Request.RequestStatus.APPROVED.getCode() + ", "
|
|
718
|
+ Request.RequestStatus.ACCOUNTING_PROCESSING.getCode() + ", " + Request.RequestStatus.ACCOUNTING_PAID.getCode() + ", "
|
|
719
|
+ Request.RequestStatus.CONDITIONALLY_APPROVED.getCode() + ", " + Request.RequestStatus.ACCOUNTING_ON_HOLD.getCode() + ")" ;
|
|
720
|
|
|
721
|
Query q = getSession().createSQLQuery(NUMBERS_REQUESTS);
|
|
722
|
return ((BigInteger) q.list().get(0));
|
|
723
|
}
|
|
724
|
|
|
725
|
public BigInteger getPaidNumber() {
|
|
726
|
String NUMBERS_PAID_REQUESTS = "select count(*) from request r where r.status in (" + Request.RequestStatus.ACCOUNTING_PAID.getCode() + ")" ;
|
|
727
|
|
|
728
|
Query q = getSession().createSQLQuery(NUMBERS_PAID_REQUESTS);
|
|
729
|
return ((BigInteger) q.list().get(0));
|
|
730
|
}
|
|
731
|
|
|
732
|
public BigInteger getNumberOfProjects() {
|
|
733
|
String NUMBERS_PROJECTS = "select count(distinct project) from request r where r.status in (" + Request.RequestStatus.APPROVED.getCode() + ", "
|
|
734
|
+ Request.RequestStatus.ACCOUNTING_PROCESSING.getCode() + ", " + Request.RequestStatus.ACCOUNTING_PAID.getCode()
|
|
735
|
+ ", " + Request.RequestStatus.CONDITIONALLY_APPROVED.getCode() + ", " + Request.RequestStatus.ACCOUNTING_ON_HOLD.getCode() + ")";
|
|
736
|
Query q = getSession().createSQLQuery(NUMBERS_PROJECTS);
|
|
737
|
return ((BigInteger) q.list().get(0));
|
|
738
|
}
|
|
739
|
|
|
740
|
public Float getTotalAmount() {
|
|
741
|
String NUMBERS_TOTAL_AMOUNT = "select sum(apcPaid) from request r";
|
|
742
|
Query q = getSession().createSQLQuery(NUMBERS_TOTAL_AMOUNT);
|
|
743
|
Float result = (Float) q.list().get(0);
|
|
744
|
if(result == null) return Float.valueOf(0);
|
|
745
|
return result;
|
|
746
|
}
|
|
747
|
|
|
748
|
public Double getAverageAmount() {
|
|
749
|
String NUMBERS_AVERAGE_AMOUNT = "select avg(apcPaid) from request r";
|
|
750
|
Query q = getSession().createSQLQuery(NUMBERS_AVERAGE_AMOUNT);
|
|
751
|
Double result = (Double) q.list().get(0);
|
|
752
|
if(result == null) return Double.valueOf(0);
|
|
753
|
return result;
|
|
754
|
}
|
|
755
|
|
|
756
|
public Double getAverageAmountPerArticle(){
|
|
757
|
String NUMBERS_AVERAGE_PER_ARTICLE = "select avg(apcPaid) from request r join publication p on r.publication=p.id where p.type='ARTICLE'";
|
|
758
|
Query q = getSession().createSQLQuery(NUMBERS_AVERAGE_PER_ARTICLE);
|
|
759
|
Double result = (Double) q.list().get(0);
|
|
760
|
if(result == null) return Double.valueOf(0);
|
|
761
|
return result;
|
|
762
|
}
|
|
763
|
|
|
764
|
public Double getAverageAmountPerMonograph(){
|
|
765
|
String NUMBERS_AVERAGE_PER_MONOGRAPH = "select avg(apcPaid) from request r join publication p on r.publication=p.id where p.type='MONOGRAPH'";
|
|
766
|
Query q = getSession().createSQLQuery(NUMBERS_AVERAGE_PER_MONOGRAPH);
|
|
767
|
Double result = (Double) q.list().get(0);
|
|
768
|
if(result == null) return Double.valueOf(0);
|
|
769
|
return result;
|
|
770
|
}
|
|
771
|
|
|
772
|
public Double getAverageAmountPerBookChapter(){
|
|
773
|
String NUMBERS_AVERAGE_PER_BOOK_CHAPTER = "select avg(apcPaid) from request r join publication p on r.publication=p.id where p.type='BOOK_CHAPTER'";
|
|
774
|
Query q = getSession().createSQLQuery(NUMBERS_AVERAGE_PER_BOOK_CHAPTER);
|
|
775
|
Double result = (Double) q.list().get(0);
|
|
776
|
if(result == null) return Double.valueOf(0);
|
|
777
|
return result;
|
|
778
|
}
|
|
779
|
|
|
780
|
public BigInteger getNumberOfPaidRequestsWithDOI() {
|
|
781
|
String NUMBERS_PAID_REQUESTS_WITH_DOI = "select count(*) from request r join publication p on r.publication=p.id where p.doi is not null " +
|
|
782
|
"and r.status=" + Request.RequestStatus.ACCOUNTING_PAID.getCode();
|
|
783
|
Query q = getSession().createSQLQuery(NUMBERS_PAID_REQUESTS_WITH_DOI);
|
|
784
|
BigInteger result = (BigInteger) q.list().get(0);
|
|
785
|
if(result == null) return BigInteger.valueOf(0);
|
|
786
|
return result;
|
|
787
|
}
|
|
788
|
|
|
789
|
public BigInteger getNumberOfApprovedRequestsWithDOI() {
|
|
790
|
String NUMBERS_APPROVED_REQUESTS_WITH_DOI = "select count(*) from request r join publication p on r.publication=p.id where p.doi is not null and r.status in (" +
|
|
791
|
Request.RequestStatus.APPROVED.getCode() + ", " + Request.RequestStatus.ACCOUNTING_PROCESSING.getCode() + ", "
|
|
792
|
+ Request.RequestStatus.ACCOUNTING_PAID.getCode() + ", " + Request.RequestStatus.CONDITIONALLY_APPROVED.getCode()
|
|
793
|
+ ", " + Request.RequestStatus.ACCOUNTING_ON_HOLD.getCode() + ", " + Request.RequestStatus.CONDITIONALLY_APPROVED.getCode() + ")";
|
|
794
|
|
|
795
|
Query q = getSession().createSQLQuery(NUMBERS_APPROVED_REQUESTS_WITH_DOI);
|
|
796
|
BigInteger result = (BigInteger) q.list().get(0);
|
|
797
|
if(result == null) return BigInteger.valueOf(0);
|
|
798
|
return result;
|
|
799
|
}
|
|
800
|
|
|
801
|
public BigInteger getNumberOfPaidPublicationPerArticle(){
|
|
802
|
String NUMBERS_PAID_ARTICLE_REQUESTS = "select count(*) from request r join publication p on r.publication=p.id where r.status in ("
|
|
803
|
+ Request.RequestStatus.ACCOUNTING_PAID.getCode() + ") and p.type='ARTICLE'" ;
|
|
804
|
Query q = getSession().createSQLQuery(NUMBERS_PAID_ARTICLE_REQUESTS);
|
|
805
|
BigInteger result = (BigInteger) q.list().get(0);
|
|
806
|
if(result == null) return BigInteger.valueOf(0);
|
|
807
|
return result;
|
|
808
|
}
|
|
809
|
|
|
810
|
public BigInteger getNumberOfPaidPublicationPerMonograph(){
|
|
811
|
String NUMBERS_PAID_MONOGRAPH_REQUESTS = "select count(*) from request r join publication p on r.publication=p.id where r.status in ("
|
|
812
|
+ Request.RequestStatus.ACCOUNTING_PAID.getCode() + ") and p.type='MONOGRAPH'" ;
|
|
813
|
Query q = getSession().createSQLQuery(NUMBERS_PAID_MONOGRAPH_REQUESTS);
|
|
814
|
BigInteger result = (BigInteger) q.list().get(0);
|
|
815
|
if(result == null) return BigInteger.valueOf(0);
|
|
816
|
return result;
|
|
817
|
}
|
|
818
|
|
|
819
|
public BigInteger getNumberOfPaidPublicationPerBookChapter(){
|
|
820
|
String NUMBERS_PAID_BOOK_CHAPTER_REQUESTS = "select count(*) from request r join publication p on r.publication=p.id where r.status in ("
|
|
821
|
+ Request.RequestStatus.ACCOUNTING_PAID.getCode() + ") and p.type='BOOK_CHAPTER'" ;
|
|
822
|
Query q = getSession().createSQLQuery(NUMBERS_PAID_BOOK_CHAPTER_REQUESTS);
|
|
823
|
BigInteger result = (BigInteger) q.list().get(0);
|
|
824
|
if(result == null) return BigInteger.valueOf(0);
|
|
825
|
return result;
|
|
826
|
}
|
|
827
|
|
|
828
|
public Request getRequestFromCSV(User user, Project project, Publication publication, String acceptanceDate,
|
|
829
|
String identifierType, String identifierValue, String publicationLicense,
|
|
830
|
String apc, String apcCurrency, String discount) throws ParseException {
|
|
831
|
|
|
832
|
Request request = new Request();
|
|
833
|
request.setUser(user);
|
|
834
|
request.setProject(project);
|
|
835
|
|
|
836
|
publication.setAcceptancedate(new SimpleDateFormat("yyyy-MM-dd").parse(acceptanceDate));
|
|
837
|
|
|
838
|
Identifier id = new Identifier();
|
|
839
|
id.setType(identifierType);
|
|
840
|
id.setValue(identifierValue);
|
|
841
|
id.setId((BigInteger) getSession().createSQLQuery("select nextval('identifier_id_seq') as id").list().get(0));
|
|
842
|
|
|
843
|
|
|
844
|
publication.getIdentifiers().add(id);
|
|
845
|
publication.setLicense(publicationLicense);
|
|
846
|
|
|
847
|
request.setApc(Float.parseFloat(apc));
|
|
848
|
request.setCurrency(Currency.valueOf(apcCurrency));
|
|
849
|
request.setDiscount(Float.parseFloat(discount));
|
|
850
|
request.setPublication(publication);
|
|
851
|
request.setStatus(Request.RequestStatus.LIBRARY_FUND_PAID);
|
|
852
|
return request;
|
|
853
|
}
|
|
854
|
}
|