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import {Injectable} from '@angular/core';
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import {HttpClient, HttpErrorResponse} from "@angular/common/http";
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import {throwError} from 'rxjs';
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import {ResultLandingInfo} from '../../utils/entities/resultLandingInfo';
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import {EnvProperties} from '../../utils/properties/env-properties';
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import {ParsingFunctions} from '../landing-utils/parsingFunctions.class';
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import {map} from "rxjs/operators";
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import {HostedByCollectedFrom, Organization} from "../../utils/result-preview/result-preview";
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import {Dates, Identifier} from "../../utils/string-utils.class";
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import {properties} from "../../../../environments/environment";
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@Injectable()
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export class ResultLandingService {
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constructor(private http: HttpClient ) {
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this.parsingFunctions = new ParsingFunctions();
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}
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public parsingFunctions: ParsingFunctions;
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resultLandingInfo: ResultLandingInfo;
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private buildResultLandingInfoUrl(id: string, identifier: Identifier, type: string): string {
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if (id) {
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let url = properties.searchAPIURLLAst;
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if (type === 'publication') {
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url += 'publications/';
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} else if (type === 'dataset') {
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url += 'datasets/';
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} else if (type === 'software') {
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url += 'software/';
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} else if (type === 'orp' || type === 'other') {
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url += 'other/';
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} else if (type === 'result') {
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url += 'results/';
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}
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url += id + '?format=json';
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return url;
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} else if (identifier) {
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// pid = "10.3389/fphys.2014.00466";
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let url = properties.searchAPIURLLAst + "resources2";
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url += "?pid="+encodeURIComponent(identifier.id) + "&pidtype=" + identifier.class + "&type=";
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if (type === 'publication') {
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url += 'publications';
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} else if (type === 'dataset') {
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url += 'datasets';
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} else if (type === 'software') {
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url += 'software';
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} else if (type === 'orp') {
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url += 'other';
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} else if (type === 'result') {
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url += 'results';
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}
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url += "&format=json";
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return url;
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}
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}
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getResultLandingInfo (id: string, identifier: Identifier, type: string, provenanceActionVocabulary: any, properties: EnvProperties): any {
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let url: string = this.buildResultLandingInfoUrl(id, identifier, type);
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let finalUrl: string = (properties.useCache) ? (properties.cacheUrl + encodeURIComponent(url)) : url;
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return this.http.get(finalUrl)
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.pipe(map(res => {
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if(!id && identifier) {
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if(!res['results'] || res['results'].length == 0) {
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throw new HttpErrorResponse({
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status: 404,
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statusText: "Not found",
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url: finalUrl,
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error: "Http failure response for "+finalUrl+": 404 Not Found"
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});
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}
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return res['results'][0];
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} else {
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return res;
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}
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}))
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.pipe(map(res => [res['result']['header']['dri:status'], res['result']['metadata']['oaf:entity'], res]))
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.pipe(map(res => [
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res[1]['oaf:result'], // 0
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res[1]['oaf:result']['title'], // 1
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res[1]['oaf:result']['rels']['rel'], // 2
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res[1]['oaf:result']['children'], // 3
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res[1]['oaf:result']['pid'], // 4
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res[1]['oaf:result']['journal'], // 5
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res[1]['oaf:result']['language'], // 6
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res[1]['oaf:result']['subject'], // 7
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res[1]['oaf:result']['context'], // 8
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res[1]['oaf:result']['creator'], // 9
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res[1]['oaf:result']['country'] , // 10
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res[1]['oaf:result']['programmingLanguage'], // 11 - software
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//res[1]['oaf:result']['resulttype'],
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(res[1]['extraInfo'] !== undefined && res[1]['extraInfo']['citations'] !== undefined)
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? res[1]['extraInfo']['citations']['citation'] : null, // 12
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res[0], // 13
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res[2] // 14
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]))
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.pipe(map(res => this.parseResultLandingInfo(res, provenanceActionVocabulary, properties)));
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}
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// getProvenanceActionVocabulary (properties: EnvProperties): any {
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// let url = properties.vocabulariesAPI+"dnet:provenanceActions.json";
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//
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// return this.http.get((properties.useCache) ? (properties.cacheUrl + encodeURIComponent(url)) : url)
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// .pipe(map(res => res['terms']))
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// .pipe(map(res => this.parseProvenanceActionVocabulary(res, properties)));
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// }
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//
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// parseProvenanceActionVocabulary(terms: any, properties: EnvProperties) {
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// var provenanceActionVocabulary: {} = {};
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// for(let term of terms) {
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// provenanceActionVocabulary[term.code] = term.englishName;
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// }
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// return provenanceActionVocabulary;
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// }
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private handleError (error: HttpErrorResponse) {
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// in a real world app, we may send the error to some remote logging infrastructure
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// instead of just logging it to the console
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console.log(error);
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return throwError(error || 'Server error');
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}
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parseResultLandingInfo (data: any, provenanceActionVocabulary: any, properties: EnvProperties): any {
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this.resultLandingInfo = new ResultLandingInfo();
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// res
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this.resultLandingInfo.record = data[14];
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this.resultLandingInfo.objIdentifier = data[14]["result"]["header"]["dri:objIdentifier"];
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this.resultLandingInfo.relcanId = ParsingFunctions.parseRelCanonicalId(this.resultLandingInfo.record, "result");
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this.resultLandingInfo.resultType = data[0].resulttype.classid;
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// res['result']['metadata']['oaf:entity']['oaf:result']
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if (data[0] != null) {
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let date: string = (data[0].dateofacceptance ? data[0].dateofacceptance : '') + ''; // transform to string in case it is an integer
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this.resultLandingInfo.date = (date && (date).indexOf('-') !== -1) ? date.split('-')[0] : date;
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this.resultLandingInfo.dateofacceptance = data[0].dateofacceptance?Dates.getDate(data[0].dateofacceptance):null;
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this.resultLandingInfo.publisher = data[0].publisher;
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if(!Array.isArray(data[0].description)) {
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//this.resultLandingInfo.description = String(data[0].description);
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this.resultLandingInfo.description = (data[0] && data[0].description) ? String(data[0].description) : "";
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} else {
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//this.resultLandingInfo.description = String(data[0].description[0]);
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this.resultLandingInfo.description = (data[0] && data[0].description[0]) ? String(data[0].description[0]) : "";
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}
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this.resultLandingInfo.embargoEndDate = data[0].embargoenddate?Dates.getDate(data[0].embargoenddate):null;
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}
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if(data[0]['bestaccessright'] && data[0]['bestaccessright'].hasOwnProperty("classname")) {
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this.resultLandingInfo.accessMode = data[0]['bestaccessright'].classname;
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}
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// res['result']['metadata']['oaf:entity']['oaf:result']['title']
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if(data[1] != null) {
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if(Array.isArray(data[1])) {
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for(let i=0; i<data[1].length; i++) {
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if(data[1][i] && data[1][i].content) {
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if(!this.resultLandingInfo.title || data[1][i].classid == "main title") {
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this.resultLandingInfo.title = String(data[1][i].content);
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}
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if(data[1][i].classid == "main title") {
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break;
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}
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}
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}
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if(!this.resultLandingInfo.title) {
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this.resultLandingInfo.title = "";
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}
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// this.resultLandingInfo.title = (data[1][0] && data[1][0].content) ? String(data[1][0].content) : "";
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if(data[1][1].classid === 'subtitle') {
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this.resultLandingInfo.subtitle = (data[1][1] && data[1][1].content) ? String(data[1][1].content) : "";
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}
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} else {
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this.resultLandingInfo.title = (data[1] && data[1].content) ? String(data[1].content) : "";
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}
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}
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// res['result']['metadata']['oaf:entity']['oaf:result']['rels']['rel']
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if(data[2] != null) {
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let relation;
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let length = Array.isArray(data[2]) ? data[2].length : 1;
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for(let i=0; i<length; i++) {
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relation = Array.isArray(data[2]) ? data[2][i] : data[2];
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if(relation.hasOwnProperty("to")) {
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if(relation['to'].class == "isProducedBy") {
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this.resultLandingInfo.fundedByProjects = this.parsingFunctions.parseFundingByProjects(this.resultLandingInfo.fundedByProjects, relation, provenanceActionVocabulary);
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} else if(relation['to'].class == "isRelatedTo") {
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let provenanceAction: string = "";
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if(provenanceActionVocabulary != null && relation.provenanceaction in provenanceActionVocabulary) {
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provenanceAction = provenanceActionVocabulary[relation.provenanceaction];
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}
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this.resultLandingInfo.relatedResearchResults = this.parsingFunctions.parseRelatedResearchResults(this.resultLandingInfo.relatedResearchResults, relation, provenanceAction);
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} else if(relation['to'].class == "hasAmongTopNSimilarDocuments") {
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this.resultLandingInfo.similarResearchResults = this.parsingFunctions.parseSimilarResearchResults(this.resultLandingInfo.similarResearchResults, relation);
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} else if(relation['to'].class == "hasAuthorInstitution") {
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this.resultLandingInfo.organizations = this.parseRelatedOrganizations(this.resultLandingInfo.organizations, relation);
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} else if(relation['to'].class == "isSupplementedBy") {
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this.resultLandingInfo.supplementaryResearchResults = this.parsingFunctions.parseSupplementaryResearchResults(this.resultLandingInfo.supplementaryResearchResults, relation);
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} else if(relation['to'].class == "isSupplementTo") {
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this.resultLandingInfo.supplementedByResearchResults = this.parsingFunctions.parseSupplementedByResearchResults(this.resultLandingInfo.supplementedByResearchResults, relation);
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}
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}
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}
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}
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207
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// res['result']['metadata']['oaf:entity']['oaf:result']['children']
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if(data[3] != null) {
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if(data[3].hasOwnProperty("result")) {
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this.resultLandingInfo.deletedByInferenceIds = [];
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let length = Array.isArray(data[3]['result']) ? data[3]['result'].length : 1;
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for(let i=0; i<length; i++) {
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let result = Array.isArray(data[3]['result']) ? data[3]['result'][i] : data[3]['result'];
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this.resultLandingInfo.deletedByInferenceIds.push(result.objidentifier);
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}
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217
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218
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}
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219
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220
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if(data[3].hasOwnProperty("instance")) {
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this.resultLandingInfo.hostedBy_collectedFrom = new Array<HostedByCollectedFrom>();
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222
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223
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this.resultLandingInfo.types = new Array<string>();
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225
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let types = new Set<string>();
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226
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227
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let counter = 0;
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228
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let instance;
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229
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let length = Array.isArray(data[3]['instance']) ? data[3]['instance'].length : 1;
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232
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for(let i=0; i<length; i++) {
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instance = Array.isArray(data[3]['instance']) ? data[3]['instance'][i] : data[3]['instance'];
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234
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235
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this.parsingFunctions.parseTypes(this.resultLandingInfo.types, types, instance);
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236
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237
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if(instance.hasOwnProperty("webresource")) {
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let url;
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239
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if(!Array.isArray(instance['webresource'])) {
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240
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url = instance['webresource'].url;
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241
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} else{
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242
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url = instance['webresource'][0].url;
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243
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}
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244
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245
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/**********************************************************/
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246
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if(instance.hasOwnProperty("hostedby")) {
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247
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counter = this.parsingFunctions.parseHostedBy_collectedFrom(this.resultLandingInfo.hostedBy_collectedFrom, instance, data[0], url, counter/*, this.resultLandingInfo.title*/, this.resultLandingInfo.accessMode);
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248
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}
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249
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/**********************************************************/
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250
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}
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251
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}
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252
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/* Order Download from via openness*/
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253
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this.resultLandingInfo.hostedBy_collectedFrom.sort((a, b) => {
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254
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if(a.bestAccessMode && a.bestAccessMode.toLowerCase() === 'open access') {
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255
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return -1;
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256
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} else if(b.bestAccessMode && b.bestAccessMode.toLowerCase() === 'open access') {
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257
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return 1;
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258
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} else if(!a.bestAccessMode || a.bestAccessMode.toLowerCase() !== 'not available') {
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259
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return 1;
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260
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} else if(!b.bestAccessMode || b.bestAccessMode.toLowerCase() !== 'not available') {
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261
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return -1;
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262
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} else {
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263
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return 0;
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264
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}
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265
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});
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266
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}
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267
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268
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if(data[3].hasOwnProperty("externalreference")) {
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269
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let externalResults: Map<string, Map<string, string>> = this.parseBioentitiesAndSoftware(data[3]);
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270
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this.resultLandingInfo.bioentities = externalResults;
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271
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}
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272
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}
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273
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274
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// res['result']['metadata']['oaf:entity']['oaf:result']['pid']
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275
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if(data[4] != null) {
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276
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this.resultLandingInfo.identifiers = this.parsingFunctions.parseIdentifiers(data[4]);
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277
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}
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278
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279
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// res['result']['metadata']['oaf:entity']['oaf:result']['journal']
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280
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if(data[5] != null) {
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281
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this.resultLandingInfo.journal = {"journal": "", "issn": "", "lissn": "", "eissn": "", "issue": "", "volume": "", "start_page": "", "end_page": ""}
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282
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283
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this.resultLandingInfo.journal['journal'] = data[5].content;
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284
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this.resultLandingInfo.journal['issn'] = data[5].issn;
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285
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this.resultLandingInfo.journal['lissn'] = data[5].lissn;
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286
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this.resultLandingInfo.journal['eissn'] = data[5].eissn;
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287
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this.resultLandingInfo.journal['issue'] = data[5].iss;
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288
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this.resultLandingInfo.journal['volume'] = data[5].vol;
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289
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this.resultLandingInfo.journal['start_page'] = data[5].sp;
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290
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this.resultLandingInfo.journal['end_page'] = data[5].ep;
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291
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}
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292
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293
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// res['result']['metadata']['oaf:entity']['oaf:result']['language']
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294
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if(data[6] != null) {
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295
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this.resultLandingInfo.languages = this.parsingFunctions.parseLanguages(data[6]);
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296
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// let languagesAndCodes: string[][] = this.parsingFunctions.parseLanguages(data[6]);
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297
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// this.resultLandingInfo.languages = languagesAndCodes[0];
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298
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// this.resultLandingInfo.languageCodes = languagesAndCodes[1];
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299
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}
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|
300
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301
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// res['result']['metadata']['oaf:entity']['oaf:result']['country']
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302
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if(data[10] != null) {
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303
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this.resultLandingInfo.countries = this.parsingFunctions.parseCountries(data[10]);
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304
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}
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305
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306
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// res['result']['metadata']['oaf:entity']['oaf:result']['subject']
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307
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if(data[7] != null) {
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308
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let subjectResults: [string[], Map<string, string[]>, Map<string, string[]>] = this.parsingFunctions.parseAllSubjects(data[7]);
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309
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this.resultLandingInfo.subjects = subjectResults[0];
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310
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this.resultLandingInfo.otherSubjects = subjectResults[1];
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311
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this.resultLandingInfo.classifiedSubjects = subjectResults[2];
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312
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}
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313
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|
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314
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this.resultLandingInfo.hostedBy_collectedFrom = this.parsingFunctions.addPublisherToHostedBy_collectedFrom(
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315
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this.resultLandingInfo.hostedBy_collectedFrom, this.resultLandingInfo.publisher,
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316
|
this.resultLandingInfo.journal, this.resultLandingInfo.identifiers);
|
|
317
|
|
|
318
|
// res['result']['metadata']['oaf:entity']['oaf:result']['programmingLanguage']
|
|
319
|
if(data[11] != null) {
|
|
320
|
this.resultLandingInfo.programmingLanguages = this.parsingFunctions.parseProgrammingLanguages(data[11]);
|
|
321
|
}
|
|
322
|
|
|
323
|
// res['result']['metadata']['oaf:entity']['extraInfo']['citations']['citation']
|
|
324
|
if(data[12] != null) {
|
|
325
|
this.resultLandingInfo.references = this.parsingFunctions.parseReferences(data[12]);
|
|
326
|
}
|
|
327
|
|
|
328
|
// res['result']['metadata']['oaf:entity']['oaf:result']['context']
|
|
329
|
if(data[8] != null) {
|
|
330
|
this.resultLandingInfo.contexts = this.parsingFunctions.parseContexts(data[8]);
|
|
331
|
}
|
|
332
|
|
|
333
|
// res['result']['header']['dri:status']
|
|
334
|
if(data[13] != null && data[13] == "under curation") {
|
|
335
|
this.resultLandingInfo.underCurationMessage = true;
|
|
336
|
} else {
|
|
337
|
this.resultLandingInfo.underCurationMessage = false;
|
|
338
|
}
|
|
339
|
|
|
340
|
// res['result']['metadata']['oaf:entity']['oaf:result']['creator']
|
|
341
|
if(data[9] != null) {
|
|
342
|
if(this.resultLandingInfo.authors == undefined) {
|
|
343
|
this.resultLandingInfo.authors = new Array<{"fullName": string, "orcid": string, "orcid_pending": string}>();
|
|
344
|
}
|
|
345
|
|
|
346
|
let authors = data[9];
|
|
347
|
let length = Array.isArray(authors) ? authors.length : 1;
|
|
348
|
|
|
349
|
for(let i=0; i<length; i++) {
|
|
350
|
let author = Array.isArray(authors) ? authors[i] : authors;
|
|
351
|
if(author) {
|
|
352
|
if(author.orcid) {
|
|
353
|
author.orcid = author.orcid.toUpperCase();
|
|
354
|
}
|
|
355
|
if(author.orcid_pending) {
|
|
356
|
author.orcid_pending = author.orcid_pending.toUpperCase();
|
|
357
|
}
|
|
358
|
this.resultLandingInfo['authors'][author.rank] = {"fullName": author.content, "orcid": author.orcid, "orcid_pending": author.orcid_pending};
|
|
359
|
}
|
|
360
|
}
|
|
361
|
this.resultLandingInfo.authors = this.resultLandingInfo.authors.filter(function (item) {
|
|
362
|
return (item != undefined && item.fullName != undefined);
|
|
363
|
});
|
|
364
|
}
|
|
365
|
this.resultLandingInfo.relatedResearchResults = this.parsingFunctions.sortByPercentage(this.resultLandingInfo.relatedResearchResults);
|
|
366
|
this.resultLandingInfo.similarResearchResults = this.parsingFunctions.sortByPercentage(this.resultLandingInfo.similarResearchResults);
|
|
367
|
this.resultLandingInfo.supplementaryResearchResults = this.parsingFunctions.sortByPercentage(this.resultLandingInfo.supplementaryResearchResults);
|
|
368
|
this.resultLandingInfo.supplementedByResearchResults = this.parsingFunctions.sortByPercentage(this.resultLandingInfo.supplementedByResearchResults);
|
|
369
|
|
|
370
|
return this.resultLandingInfo;
|
|
371
|
}
|
|
372
|
|
|
373
|
parseRelatedOrganizations(organizations: Organization[], relation: any): Organization[] {
|
|
374
|
if(organizations == undefined) {
|
|
375
|
organizations = []
|
|
376
|
}
|
|
377
|
|
|
378
|
let organization: { "name": string, "shortname": string,
|
|
379
|
"id": string, "websiteUrl": string,
|
|
380
|
"country": string, "trust": number
|
|
381
|
} = {
|
|
382
|
name: "", shortname: "",
|
|
383
|
id: "", websiteUrl: "",
|
|
384
|
country: "", trust: null
|
|
385
|
};
|
|
386
|
|
|
387
|
organization.id = relation['to'].content;
|
|
388
|
organization.name = relation.legalname;
|
|
389
|
organization.shortname = relation.legalshortname;
|
|
390
|
organization.websiteUrl = relation.websiteurl;
|
|
391
|
if(relation.country) {
|
|
392
|
organization.country = relation.country.classname;
|
|
393
|
}
|
|
394
|
if(relation.trust) {
|
|
395
|
organization.trust = Math.round(relation.trust*100);
|
|
396
|
}
|
|
397
|
|
|
398
|
organizations.push(organization);
|
|
399
|
return organizations;
|
|
400
|
}
|
|
401
|
|
|
402
|
parseBioentitiesAndSoftware(children: any) : Map<string, Map<string, string>> {
|
|
403
|
let bioentities: Map<string, Map<string, string>>;
|
|
404
|
|
|
405
|
let length = Array.isArray(children['externalreference']) ? children['externalreference'].length : 1;
|
|
406
|
|
|
407
|
let externalreference;
|
|
408
|
for(let i=0; i<length; i++) {
|
|
409
|
externalreference = Array.isArray(children['externalreference']) ? children['externalreference'][i] : children['externalreference'];
|
|
410
|
|
|
411
|
if(externalreference.hasOwnProperty("qualifier")) {
|
|
412
|
if(externalreference['qualifier'].classid == "accessionNumber") {
|
|
413
|
|
|
414
|
if(bioentities == undefined) {
|
|
415
|
bioentities = new Map<string, Map<string, string>>();
|
|
416
|
}
|
|
417
|
|
|
418
|
if(!bioentities.has(externalreference.sitename)) {
|
|
419
|
bioentities.set(externalreference.sitename, new Map<string, string>());
|
|
420
|
}
|
|
421
|
bioentities.get(externalreference.sitename).set(externalreference.refidentifier, externalreference.url);
|
|
422
|
|
|
423
|
}
|
|
424
|
}
|
|
425
|
}
|
|
426
|
|
|
427
|
return bioentities;
|
|
428
|
}
|
|
429
|
|
|
430
|
getOpenCitations(id: string, properties:EnvProperties) {
|
|
431
|
//https://services.openaire.eu/opencitations/getCitations?id=doajarticles::2634200c24772ee8f10232d3e184ec65
|
|
432
|
let url = properties.openCitationsAPIURL+id;// "https://services.openaire.eu/opencitations/getCitations?id=" + id;
|
|
433
|
let key = url;
|
|
434
|
|
|
435
|
//return this.http.get((properties.useCache)? (properties.cacheUrl+encodeURIComponent(url)): url)
|
|
436
|
return this.http.get(url)
|
|
437
|
.pipe(map(res => [res['total'], this.parseOpenCitations(res['results'])]));
|
|
438
|
}
|
|
439
|
|
|
440
|
parseOpenCitations(openCitations: any): {"url": string, "title": string, "year": string, "doi": string, "authors": string[]}[] {
|
|
441
|
//title, doi, authors
|
|
442
|
let citations = new Array<{"url": string, "title": string, "year": string, "doi": string, "authors": string[]}>();
|
|
443
|
|
|
444
|
let openCitation;
|
|
445
|
|
|
446
|
let length = Array.isArray(openCitations) ? openCitations.length : 1;
|
|
447
|
for(let i=0; i<length; i++) {
|
|
448
|
openCitation = Array.isArray(openCitations) ? openCitations[i] : openCitations;
|
|
449
|
|
|
450
|
let citation: {"url": string, "title": string, "year": string, "doi": string, "authors": string[]} = {"url": "", "title": "", "year": "", "doi": "", "authors": []};
|
|
451
|
|
|
452
|
if(openCitation && openCitation.id) {
|
|
453
|
citation.url = openCitation.id;
|
|
454
|
citation.title = openCitation.title;
|
|
455
|
//citation.type = openCitation.type;
|
|
456
|
citation.year = (openCitation.pubDate && (openCitation.pubDate).indexOf('-') !== -1)?openCitation.pubDate.split('-')[0]:openCitation.pubDate;
|
|
457
|
citation.doi = openCitation.doi;
|
|
458
|
|
|
459
|
let authorsLength = Array.isArray(openCitation.authors) ? openCitation.authors.length : 1;
|
|
460
|
for(let i=0; i<authorsLength; i++) {
|
|
461
|
let author = Array.isArray(openCitation.authors) ? openCitation.authors[i] : openCitation.authors;
|
|
462
|
|
|
463
|
if(author) {
|
|
464
|
let lastFirstName: string = "";
|
|
465
|
if(author.lastName) {
|
|
466
|
lastFirstName = author.lastName;
|
|
467
|
}
|
|
468
|
if(author.lastName && author.firstName) {
|
|
469
|
lastFirstName += ", ";
|
|
470
|
}
|
|
471
|
if(author.firstName) {
|
|
472
|
lastFirstName += author.firstName;
|
|
473
|
}
|
|
474
|
|
|
475
|
if(lastFirstName) {
|
|
476
|
citation.authors.push(lastFirstName);
|
|
477
|
}
|
|
478
|
}
|
|
479
|
}
|
|
480
|
citations.push(citation);
|
|
481
|
}
|
|
482
|
}
|
|
483
|
return citations;
|
|
484
|
}
|
|
485
|
|
|
486
|
getEnermapsDetails(id: string) {
|
|
487
|
let url = properties.enermapsURL+"/api/datasets_full?shared_id=eq."+id;
|
|
488
|
return this.http.get((properties.useLongCache)? (properties.cacheUrl+encodeURIComponent(url)): url)
|
|
489
|
// return this.http.get(url)
|
|
490
|
.pipe(map(res => this.parseEnermapsDetails(res)));
|
|
491
|
}
|
|
492
|
|
|
493
|
parseEnermapsDetails(response: any) {
|
|
494
|
let details = Array.isArray(response) ? response[0] : response;
|
|
495
|
let metadata = (details && details.metadata) ? details.metadata : null;
|
|
496
|
|
|
497
|
let entries = [];
|
|
498
|
let keys = metadata ? Object.keys(metadata) : null;
|
|
499
|
for(let key of keys) {
|
|
500
|
if(key != "shared_id" && key && metadata[key]) {
|
|
501
|
entries.push([key, metadata[key]]);
|
|
502
|
}
|
|
503
|
}
|
|
504
|
return entries;
|
|
505
|
}
|
|
506
|
}
|