Revision 47676
Added by Claudio Atzori almost 7 years ago
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/repository/SearchApiRepository.java | ||
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package eu.dnetlib.datasource.publisher.repository; |
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import java.util.List; |
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import eu.dnetlib.datasource.publisher.model.db.SearchInterfacesEntry; |
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import org.springframework.data.jpa.repository.JpaRepository; |
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import org.springframework.stereotype.Repository; |
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/** |
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* Created by claudio on 12/04/2017. |
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*/ |
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@Repository |
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public interface SearchApiRepository extends JpaRepository<SearchInterfacesEntry, String> { |
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SearchInterfacesEntry findOneById(String id); |
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List<SearchInterfacesEntry> findByRepoidContainingOrRepoNameContainingOrAlternativeNameContainingOrRepoPrefixContainingOrRepoOrganizationContainingAllIgnoreCase( |
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String repoId, |
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String repoName, |
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String alternativeName, |
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String repoPrefix, |
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String repoOrganization); |
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} |
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modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/clients/DatasourceInfoRetriever.java | ||
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package eu.dnetlib.datasource.publisher.clients; |
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import java.util.List; |
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import java.util.Queue; |
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import java.util.concurrent.*; |
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import javax.annotation.Resource; |
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import com.google.common.collect.Lists; |
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import com.google.common.util.concurrent.*; |
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import eu.dnetlib.datasource.publisher.ApiException; |
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import eu.dnetlib.datasource.publisher.clients.utils.IndexDsInfo; |
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import eu.dnetlib.datasource.publisher.clients.utils.IndexRecordsInfo; |
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import eu.dnetlib.datasource.publisher.model.AggregationInfo; |
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import eu.dnetlib.datasource.publisher.model.AggregationStage; |
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import eu.dnetlib.datasource.publisher.model.DatasourceResponse; |
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import eu.dnetlib.datasource.publisher.model.db.*; |
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import eu.dnetlib.datasource.publisher.repository.*; |
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import org.apache.commons.logging.Log; |
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import org.apache.commons.logging.LogFactory; |
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import org.springframework.beans.factory.annotation.Autowired; |
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import org.springframework.beans.factory.annotation.Value; |
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import org.springframework.data.domain.Pageable; |
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import org.springframework.data.domain.Slice; |
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import org.springframework.util.concurrent.ListenableFuture; |
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import org.springframework.util.concurrent.ListenableFutureCallback; |
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/** |
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* Created by claudio on 20/10/2016. |
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*/ |
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public class DatasourceInfoRetriever { |
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private static final Log log = LogFactory.getLog(DatasourceInfoRetriever.class); |
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@Autowired |
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private MongoLoggerClient mongoLoggerClient; |
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@Autowired |
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private DatasourceIndexClient datasourceIndexClient; |
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@Autowired |
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private DatasourceRepository dsRepository; |
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@Autowired |
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private SearchApiRepository searchApiRepository; |
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@Autowired |
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private CountryTermRepository countryTermRepository; |
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@Autowired |
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private TypologyTermRepository typologyTermRepository; |
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@Autowired |
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private ProtocolTermRepository protocolTermRepository; |
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@Autowired |
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private CompatibilityTermRepository compatibilityTermRepository; |
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@Autowired |
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private ActivationTermRepository activationTermRepository; |
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@Resource(name = "datasourceIsLookupClient") |
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private ISLookupClient isLookupClient; |
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private ListeningExecutorService service; |
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private final static int WORKERS = 100; |
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@Value("${datasource.publisher.timeout}") |
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private int timeout = 10; |
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public DatasourceInfoRetriever() { |
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service = MoreExecutors.listeningDecorator( |
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new ScheduledThreadPoolExecutor(WORKERS, |
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new ThreadFactoryBuilder().setNameFormat("datasource-info-retriever-%d").build())); |
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} |
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public List<String> listIds(final Pageable pageable) throws ApiException { |
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return dsRepository.findAll(pageable) |
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.map(d -> d.getId()) |
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.getContent(); |
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} |
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public List<DatasourceResponse> searchByName(final String name, final Pageable pageable) { |
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final List<DatasourceResponse> datasourceResponse = Lists.newArrayList(); |
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final CountDownLatch outerLatch = new CountDownLatch(3); |
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final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
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log.debug(String.format("search ds by name '%s'", name)); |
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final ListenableFuture<Slice<Datasource>> c = |
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dsRepository.findByOfficialnameContainingOrEnglishnameContainingAllIgnoreCase(name, name, pageable); |
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c.addCallback(getSearchCallback(outerLatch, errors, datasourceResponse)); |
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waitLatch(outerLatch, errors, timeout); |
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return datasourceResponse; |
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} |
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public List<DatasourceResponse> searchByCountry(final String country, final Pageable pageable) { |
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final List<DatasourceResponse> datasourceResponse = Lists.newArrayList(); |
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final CountDownLatch outerLatch = new CountDownLatch(3); |
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final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
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log.debug(String.format("search ds by country '%s'", country)); |
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dsRepository.findByOrganizationsCountryIgnoreCase(country, pageable).addCallback(getSearchCallback(outerLatch, errors, datasourceResponse)); |
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waitLatch(outerLatch, errors, timeout); |
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return datasourceResponse; |
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} |
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public List<DatasourceResponse> searchByContactemail(final String email, final Pageable pageable) { |
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final List<DatasourceResponse> datasourceResponse = Lists.newArrayList(); |
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final CountDownLatch outerLatch = new CountDownLatch(3); |
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final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
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log.debug(String.format("search ds by email '%s'", email)); |
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dsRepository.findByContactemailContainingAllIgnoreCase(email, pageable).addCallback(getSearchCallback(outerLatch, errors, datasourceResponse)); |
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waitLatch(outerLatch, errors, timeout); |
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return datasourceResponse; |
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} |
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private ListenableFutureCallback<Slice<Datasource>> getSearchCallback(final CountDownLatch outerLatch, |
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final Queue<Throwable> errors, |
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final List<DatasourceResponse> datasourceResponse) { |
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return new ListenableFutureCallback<Slice<Datasource>>() { |
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@Override |
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public void onSuccess(final Slice<Datasource> datasources) { |
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datasources.forEach(d -> { |
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final DatasourceResponse response = new DatasourceResponse(); |
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response.setDatasource(d); |
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getAggregationHistory(d.getId(), outerLatch, errors, response); |
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getIndexDsInfo(d.getId(), outerLatch, errors, response); |
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datasourceResponse.add(response); |
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}); |
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outerLatch.countDown(); |
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} |
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@Override |
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public void onFailure(final Throwable e) { |
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errors.offer(e); |
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outerLatch.countDown(); |
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} |
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}; |
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} |
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public ClientResponse getInfo(final String dsId) { |
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final CountDownLatch outerLatch = new CountDownLatch(3); |
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final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
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final DatasourceResponse datasourceResponse = new DatasourceResponse(); |
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getAggregationHistory(dsId, outerLatch, errors, datasourceResponse); |
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dsRepository.findOneById(dsId).addCallback(new ListenableFutureCallback<Datasource>() { |
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@Override |
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public void onSuccess(final Datasource datasource) { |
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datasourceResponse.setDatasource(datasource); |
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outerLatch.countDown(); |
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} |
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@Override |
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public void onFailure(final Throwable e) { |
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errors.offer(e); |
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outerLatch.countDown(); |
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} |
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}); |
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getIndexDsInfo(dsId, outerLatch, errors, datasourceResponse); |
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waitLatch(outerLatch, errors, timeout); |
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/* |
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if (!errors.isEmpty()) { |
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datasourceResponse.getResponseHeader().setError(Joiner.on("\n").skipNulls().join(errors.stream().map(e -> e.getMessage()).collect(Collectors.toList()))); |
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log.error(Joiner.on("\n").skipNulls().join(errors.stream().map(e -> ExceptionUtils.getFullStackTrace(e)).collect(Collectors.toList()))); |
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} |
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*/ |
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return new ClientResponse().datasourceInfo(datasourceResponse).errors(errors); |
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} |
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public void setManaged(final String id, final boolean managed) { |
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log.info(String.format("setting managed = '%s' for ds '%s'", managed, id)); |
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dsRepository.setManaged(id, managed); |
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} |
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public List<SearchInterfacesEntry> searchInterface(final String field, final String value) { |
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switch (field) { |
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case "__SEARCH__": |
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return searchApiRepository |
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.findByRepoidContainingOrRepoNameContainingOrAlternativeNameContainingOrRepoPrefixContainingOrRepoOrganizationContainingAllIgnoreCase( |
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value, value, value, value, value); |
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case "country": |
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break; |
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case "type": |
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break; |
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case "protocol": |
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break; |
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case "compliance": |
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break; |
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case "active": |
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break; |
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default: |
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throw new IllegalArgumentException(""); |
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} |
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return null; |
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} |
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public List<CountryTerm> browseCountries() { |
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return countryTermRepository.findAll(); |
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} |
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public List<TypologyTerm> browseTypologies() { |
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return typologyTermRepository.findAll(); |
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} |
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public List<ProtocolTerm> browseProtocols() { |
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return protocolTermRepository.findAll(); |
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} |
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public List<CompatibilityTerm> browseCompatibility() { |
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return compatibilityTermRepository.findAll(); |
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} |
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public List<ActivationTerm> browseActivation() { |
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return activationTermRepository.findAll(); |
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} |
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private void getIndexDsInfo(final String dsId, |
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final CountDownLatch outerLatch, |
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final Queue<Throwable> errors, |
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final DatasourceResponse datasourceResponse) { |
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Futures.addCallback( |
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service.submit(() -> isLookupClient.calculateCurrentIndexDsInfo()), |
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new FutureCallback<IndexDsInfo>() { |
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public void onSuccess(final IndexDsInfo info) { |
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final CountDownLatch innerLatch = new CountDownLatch(1); |
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Futures.addCallback( |
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service.submit(() -> datasourceIndexClient.getIndexInfo(dsId, info)), |
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new FutureCallback<IndexRecordsInfo>() { |
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public void onSuccess(IndexRecordsInfo info) { |
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datasourceResponse.setIndexRecords(info.getCount()).setLastIndexingDate(info.getDate()); |
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innerLatch.countDown(); |
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} |
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public void onFailure(Throwable e) { |
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errors.offer(e); |
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innerLatch.countDown(); |
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} |
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}); |
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waitLatch(innerLatch, errors, timeout); |
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outerLatch.countDown(); |
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} |
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public void onFailure(final Throwable e) { |
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errors.offer(e); |
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outerLatch.countDown(); |
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} |
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}); |
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} |
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private void getAggregationHistory(final String dsId, |
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final CountDownLatch outerLatch, |
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final Queue<Throwable> errors, |
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final DatasourceResponse datasourceResponse) { |
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Futures.addCallback( |
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service.submit(() -> mongoLoggerClient.getAggregationHistory(dsId)), |
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new FutureCallback<List<AggregationInfo>>() { |
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public void onSuccess(List<AggregationInfo> info) { |
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setAggregationHistory(datasourceResponse, info); |
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outerLatch.countDown(); |
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} |
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public void onFailure(Throwable e) { |
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errors.offer(e); |
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outerLatch.countDown(); |
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} |
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}); |
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} |
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private void setAggregationHistory(DatasourceResponse datasourceResponse, final List<AggregationInfo> info) { |
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datasourceResponse.setAggregationHistory(info); |
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if (!info.isEmpty()) { |
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datasourceResponse |
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.setLastCollection(info.stream().filter(a -> AggregationStage.COLLECT.equals(a.getAggregationStage())).findFirst().get()) |
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.setLastTransformation(info.stream().filter(a -> AggregationStage.TRANSFORM.equals(a.getAggregationStage())).findFirst().get()); |
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} |
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} |
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private void waitLatch(final CountDownLatch latch, final Queue<Throwable> errors, final int waitSeconds) { |
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try { |
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if (!latch.await(waitSeconds, TimeUnit.SECONDS)) { |
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errors.offer(new TimeoutException("Waiting for requests to complete has timed out.")); |
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} |
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} catch (final InterruptedException e) { |
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errors.offer(e); |
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} |
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} |
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} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/repository/SearchInterfaceRepository.java | ||
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package eu.dnetlib.datasource.publisher.repository; |
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import java.util.List; |
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import eu.dnetlib.datasource.publisher.model.db.SearchInterfacesEntry; |
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import org.springframework.data.jpa.repository.JpaRepository; |
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import org.springframework.stereotype.Repository; |
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/** |
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* Created by claudio on 12/04/2017. |
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*/ |
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@Repository |
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public interface SearchInterfaceRepository extends JpaRepository<SearchInterfacesEntry, String> { |
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SearchInterfacesEntry findOneById(String id); |
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List<SearchInterfacesEntry> findByRepoidContainingOrRepoNameContainingOrAlternativeNameContainingOrRepoPrefixContainingOrRepoOrganizationContainingAllIgnoreCase( |
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String repoId, |
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String repoName, |
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String alternativeName, |
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String repoPrefix, |
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String repoOrganization); |
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} |
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modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/repository/ApiRepository.java | ||
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package eu.dnetlib.datasource.publisher.repository; |
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import java.util.List; |
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import eu.dnetlib.datasource.publisher.model.db.Api; |
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import org.apache.commons.lang.StringUtils; |
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import org.apache.commons.lang3.RandomStringUtils; |
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import org.springframework.data.jpa.repository.JpaRepository; |
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import org.springframework.data.jpa.repository.Query; |
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import org.springframework.stereotype.Repository; |
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/** |
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* Created by claudio on 15/06/2017. |
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*/ |
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@Repository |
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public interface ApiRepository extends JpaRepository<Api, String> { |
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String ID_PREFIX = "api_________::"; |
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static String createId(Api api) { |
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return ID_PREFIX + api.getDatasource() + "::" + RandomStringUtils.randomAlphanumeric(8); |
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} |
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@Query("select a from Api a where a.datasource = ?1") |
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List<Api> findByDatasource(String dsId); |
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} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/repository/DatasourceRepository.java | ||
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@Query("update Datasource d set d.managed = ?2 where d.id = ?1") |
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void setManaged(String id, boolean managed); |
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@Modifying |
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@Transactional |
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@Query("update Datasource d set d.officialname = ?2 where d.id = ?1") |
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void setOfficialname(String id, String officialname); |
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@Modifying |
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@Transactional |
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@Query("update Datasource d set d.englishname = ?2 where d.id = ?1") |
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void setEnglishname(String id, String englishname); |
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@Modifying |
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@Transactional |
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@Query("update Datasource d set d.latitude = ?2 where d.id = ?1") |
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void setLatitude(String id, Double latitude); |
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@Modifying |
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@Transactional |
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@Query("update Datasource d set d.longitude = ?2 where d.id = ?1") |
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void setLongitude(String id, Double longitude); |
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} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/model/db/ApiParamKey.java | ||
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3 | 3 |
import java.io.Serializable; |
4 | 4 |
import java.util.Objects; |
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import javax.persistence.Embeddable; |
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import javax.persistence.JoinColumn; |
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import javax.persistence.ManyToOne; |
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import com.fasterxml.jackson.annotation.JsonIgnore; |
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import com.fasterxml.jackson.annotation.JsonIgnoreProperties; |
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7 | 11 |
import com.google.common.collect.ComparisonChain; |
8 | 12 |
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9 | 13 |
/** |
10 | 14 |
* Created by claudio on 13/04/2017. |
11 | 15 |
*/ |
12 | 16 |
@Embeddable |
17 |
@JsonIgnoreProperties(ignoreUnknown = true) |
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13 | 18 |
public class ApiParamKey implements Serializable { |
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@JsonIgnore |
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@ManyToOne |
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@JoinColumn(name = "api") |
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private Api api = null; |
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private String param; |
16 | 26 |
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private String value;
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public ApiParamKey() {}
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18 | 28 |
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19 | 29 |
public String getParam() { |
20 | 30 |
return param; |
21 | 31 |
} |
22 | 32 |
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public String getValue() { |
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return value; |
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} |
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26 |
|
|
27 | 33 |
public ApiParamKey setParam(final String param) { |
28 | 34 |
this.param = param; |
29 | 35 |
return this; |
30 | 36 |
} |
31 | 37 |
|
32 |
public ApiParamKey setValue(final String value) { |
|
33 |
this.value = value; |
|
34 |
return this; |
|
38 |
public Api getApi() { |
|
39 |
return api; |
|
35 | 40 |
} |
36 | 41 |
|
42 |
public void setApi(final Api api) { |
|
43 |
this.api = api; |
|
44 |
} |
|
45 |
|
|
37 | 46 |
@Override |
38 | 47 |
public int hashCode() { |
39 |
return Objects.hash(getParam(), getValue());
|
|
48 |
return Objects.hash(getParam(), getApi().getId());
|
|
40 | 49 |
} |
41 | 50 |
|
42 | 51 |
@Override |
... | ... | |
50 | 59 |
ApiParamKey apk = (ApiParamKey) o; |
51 | 60 |
return ComparisonChain.start() |
52 | 61 |
.compare(getParam(), apk.getParam()) |
53 |
.compare(getValue(), apk.getValue())
|
|
62 |
.compare(getApi(), apk.getApi())
|
|
54 | 63 |
.result() == 0; |
55 | 64 |
} |
65 |
|
|
66 |
|
|
56 | 67 |
} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/model/db/Organization.java | ||
---|---|---|
4 | 4 |
import java.util.Set; |
5 | 5 |
import javax.persistence.*; |
6 | 6 |
|
7 |
import com.fasterxml.jackson.annotation.JsonAutoDetect; |
|
8 | 7 |
import com.fasterxml.jackson.annotation.JsonIgnore; |
9 | 8 |
import io.swagger.annotations.ApiModel; |
10 | 9 |
|
... | ... | |
13 | 12 |
*/ |
14 | 13 |
@Entity |
15 | 14 |
@Table(name = "dsm_organizations") |
16 |
@JsonAutoDetect |
|
15 |
//@JsonAutoDetect
|
|
17 | 16 |
@ApiModel(value = "Organization model", description = "provides organization details") |
18 | 17 |
public class Organization { |
19 | 18 |
|
... | ... | |
67 | 66 |
mappedBy = "organizations") |
68 | 67 |
private Set<Datasource> datasources; |
69 | 68 |
|
69 |
public Organization() {} |
|
70 |
|
|
70 | 71 |
public String getId() { |
71 | 72 |
return id; |
72 | 73 |
} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/model/db/Api.java | ||
---|---|---|
5 | 5 |
import java.util.Set; |
6 | 6 |
import javax.persistence.*; |
7 | 7 |
|
8 |
import com.fasterxml.jackson.annotation.JsonAutoDetect; |
|
9 |
import com.fasterxml.jackson.annotation.JsonIgnore; |
|
8 |
import com.google.common.collect.ComparisonChain; |
|
10 | 9 |
import com.google.gson.Gson; |
11 | 10 |
import io.swagger.annotations.ApiModel; |
12 | 11 |
|
... | ... | |
15 | 14 |
*/ |
16 | 15 |
@Entity |
17 | 16 |
@Table(name = "dsm_api") |
18 |
@JsonAutoDetect |
|
19 | 17 |
@ApiModel(value = "Datasource Api model", description = "describes the datasource api") |
20 |
public class Api { |
|
18 |
public class Api implements Comparable<Api> {
|
|
21 | 19 |
|
22 | 20 |
@Id |
23 | 21 |
private String id = null; |
24 | 22 |
|
25 | 23 |
private String protocol = null; |
26 |
@JsonIgnore |
|
27 |
@ManyToOne |
|
28 |
@JoinColumn(name = "datasource") |
|
29 |
private Datasource datasource = null; |
|
24 |
|
|
25 |
private String datasource = null; |
|
30 | 26 |
private String contentdescription = null; |
31 | 27 |
private Boolean active = false; |
32 | 28 |
private Boolean removable = false; |
... | ... | |
63 | 59 |
|
64 | 60 |
private String baseurl = null; |
65 | 61 |
|
66 |
@OneToMany(mappedBy="api", cascade = CascadeType.ALL, fetch = FetchType.EAGER)
|
|
62 |
@OneToMany(mappedBy = "id.api", cascade = CascadeType.ALL, fetch = FetchType.EAGER)
|
|
67 | 63 |
private Set<Apiparam> apiparam; |
68 | 64 |
|
65 |
public Api() {} |
|
66 |
|
|
69 | 67 |
public String getId() { |
70 | 68 |
return id; |
71 | 69 |
} |
... | ... | |
74 | 72 |
return protocol; |
75 | 73 |
} |
76 | 74 |
|
77 |
public Datasource getDatasource() {
|
|
75 |
public String getDatasource() {
|
|
78 | 76 |
return datasource; |
79 | 77 |
} |
80 | 78 |
|
... | ... | |
160 | 158 |
return this; |
161 | 159 |
} |
162 | 160 |
|
163 |
public Api setDatasource(final Datasource datasource) {
|
|
161 |
public Api setDatasource(final String datasource) {
|
|
164 | 162 |
this.datasource = datasource; |
165 | 163 |
return this; |
166 | 164 |
} |
... | ... | |
277 | 275 |
return new Gson().toJson(this); |
278 | 276 |
} |
279 | 277 |
|
278 |
@Override |
|
279 |
public int compareTo(final Api a) { |
|
280 |
return ComparisonChain.start() |
|
281 |
.compare(getId(), a.getId()) |
|
282 |
.result(); |
|
283 |
} |
|
284 |
|
|
280 | 285 |
} |
281 | 286 |
|
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/model/db/Identity.java | ||
---|---|---|
1 | 1 |
package eu.dnetlib.datasource.publisher.model.db; |
2 | 2 |
|
3 |
import javax.persistence.*; |
|
3 |
import javax.persistence.Entity; |
|
4 |
import javax.persistence.Id; |
|
5 |
import javax.persistence.Table; |
|
4 | 6 |
|
5 |
import com.fasterxml.jackson.annotation.JsonAutoDetect; |
|
6 | 7 |
import io.swagger.annotations.ApiModel; |
7 | 8 |
|
8 | 9 |
/** |
9 | 10 |
* Created by claudio on 13/04/2017. |
10 | 11 |
*/ |
12 |
|
|
11 | 13 |
@Entity |
12 | 14 |
@Table(name = "dsm_identities") |
13 |
@JsonAutoDetect |
|
15 |
//@JsonAutoDetect
|
|
14 | 16 |
@ApiModel(value = "Identities model", description = "provides identity details") |
15 | 17 |
public class Identity { |
16 | 18 |
|
... | ... | |
19 | 21 |
|
20 | 22 |
private String issuertype; |
21 | 23 |
|
22 |
public String pid() { |
|
24 |
public Identity() {} |
|
25 |
|
|
26 |
public String getPid() { |
|
23 | 27 |
return this.pid; |
24 | 28 |
} |
25 | 29 |
|
26 |
public String issuertype() {
|
|
30 |
public String getIssuertype() {
|
|
27 | 31 |
return this.issuertype; |
28 | 32 |
} |
29 | 33 |
|
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/model/db/Apiparam.java | ||
---|---|---|
1 | 1 |
package eu.dnetlib.datasource.publisher.model.db; |
2 | 2 |
|
3 |
import javax.persistence.*; |
|
3 |
import javax.persistence.EmbeddedId; |
|
4 |
import javax.persistence.Entity; |
|
5 |
import javax.persistence.Table; |
|
4 | 6 |
|
5 |
import com.fasterxml.jackson.annotation.JsonAutoDetect; |
|
6 | 7 |
import com.fasterxml.jackson.annotation.JsonIgnore; |
8 |
import com.fasterxml.jackson.annotation.JsonIgnoreProperties; |
|
7 | 9 |
import io.swagger.annotations.ApiModel; |
8 | 10 |
|
9 | 11 |
/** |
... | ... | |
11 | 13 |
*/ |
12 | 14 |
@Entity |
13 | 15 |
@Table(name = "dsm_apiparams") |
14 |
@JsonAutoDetect
|
|
16 |
@JsonIgnoreProperties(ignoreUnknown = true)
|
|
15 | 17 |
@ApiModel(value = "Datasource Api params model", description = "describes the datasource api params") |
16 | 18 |
public class Apiparam { |
17 | 19 |
|
20 |
@JsonIgnore |
|
18 | 21 |
@EmbeddedId |
19 | 22 |
private ApiParamKey id; |
20 | 23 |
|
21 |
@JsonIgnore |
|
22 |
@ManyToOne |
|
23 |
@JoinColumn(name = "api") |
|
24 |
private Api api = null; |
|
24 |
private String value; |
|
25 | 25 |
|
26 |
public Apiparam() {} |
|
27 |
|
|
26 | 28 |
public ApiParamKey getId() { |
27 | 29 |
return id; |
28 | 30 |
} |
29 | 31 |
|
30 |
public Api getApi() { |
|
31 |
return api; |
|
32 |
} |
|
33 |
|
|
34 | 32 |
public Apiparam setId(final ApiParamKey id) { |
35 | 33 |
this.id = id; |
36 | 34 |
return this; |
37 | 35 |
} |
38 | 36 |
|
39 |
public Apiparam setApi(final Api api) { |
|
40 |
this.api = api; |
|
41 |
return this; |
|
37 |
public String getValue() { |
|
38 |
return value; |
|
42 | 39 |
} |
43 | 40 |
|
41 |
public void setValue(final String value) { |
|
42 |
this.value = value; |
|
43 |
} |
|
44 |
|
|
45 |
public String getParam() { |
|
46 |
return id.getParam(); |
|
47 |
} |
|
48 |
|
|
49 |
public void setParam(final String param) { |
|
50 |
getId().setParam(param); |
|
51 |
} |
|
52 |
|
|
44 | 53 |
} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/model/db/Datasource.java | ||
---|---|---|
4 | 4 |
import java.util.Set; |
5 | 5 |
import javax.persistence.*; |
6 | 6 |
|
7 |
import com.fasterxml.jackson.annotation.JsonAutoDetect; |
|
8 | 7 |
import io.swagger.annotations.ApiModel; |
9 | 8 |
|
10 | 9 |
/** |
... | ... | |
12 | 11 |
*/ |
13 | 12 |
@Entity |
14 | 13 |
@Table(name = "dsm_datasources") |
15 |
@JsonAutoDetect |
|
14 |
//@JsonAutoDetect
|
|
16 | 15 |
@ApiModel(value = "Datasource model", description = "provides datasource details") |
17 | 16 |
public class Datasource { |
18 | 17 |
|
19 | 18 |
@Id |
20 | 19 |
private String id = null; |
21 |
private String officialname = null; //findByOfficialnameContainingOrEnglishnameContaining
|
|
20 |
private String officialname = null; |
|
22 | 21 |
private String englishname = null; |
23 | 22 |
private String websiteurl = null; |
24 | 23 |
private String logourl = null; |
... | ... | |
71 | 70 |
|
72 | 71 |
private Boolean managed; |
73 | 72 |
|
74 |
@OneToMany(mappedBy="datasource", cascade = CascadeType.ALL, fetch = FetchType.EAGER) |
|
73 |
/* |
|
74 |
@JsonIgnore |
|
75 |
@OneToMany(mappedBy = "datasource", cascade = CascadeType.ALL, fetch = FetchType.EAGER) |
|
75 | 76 |
private Set<Api> api = null; |
77 |
*/ |
|
76 | 78 |
|
77 | 79 |
@ManyToMany(cascade = { CascadeType.PERSIST, CascadeType.MERGE }, fetch = FetchType.EAGER) |
78 | 80 |
@JoinTable( |
... | ... | |
90 | 92 |
inverseJoinColumns = @JoinColumn(name="pid")) |
91 | 93 |
private Set<Identity> identities; |
92 | 94 |
|
95 |
public Datasource() {} |
|
96 |
|
|
93 | 97 |
public String getId() { |
94 | 98 |
return id; |
95 | 99 |
} |
... | ... | |
254 | 258 |
return managed; |
255 | 259 |
} |
256 | 260 |
|
257 |
public Set<Api> getApi() { |
|
258 |
return api; |
|
259 |
} |
|
260 |
|
|
261 | 261 |
public Set<Organization> getOrganizations() { |
262 | 262 |
return organizations; |
263 | 263 |
} |
... | ... | |
471 | 471 |
return this; |
472 | 472 |
} |
473 | 473 |
|
474 |
public Datasource setApi(final Set<Api> api) { |
|
475 |
this.api = api; |
|
476 |
return this; |
|
477 |
} |
|
478 |
|
|
479 | 474 |
public Datasource setOrganizations(final Set<Organization> organizations) { |
480 | 475 |
this.organizations = organizations; |
481 | 476 |
return this; |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/model/AggregationStage.java | ||
---|---|---|
18 | 18 |
case "TRANSFORM": |
19 | 19 |
case "TRANSFORMATION": |
20 | 20 |
return AggregationStage.TRANSFORM; |
21 |
|
|
21 | 22 |
} |
22 | 23 |
throw new IllegalArgumentException("invalid AggregationStage: " + s); |
23 | 24 |
} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/clients/MongoLoggerClient.java | ||
---|---|---|
26 | 26 |
|
27 | 27 |
import static com.mongodb.client.model.Filters.and; |
28 | 28 |
import static com.mongodb.client.model.Filters.eq; |
29 |
import static com.mongodb.client.model.Filters.regex; |
|
29 | 30 |
|
30 | 31 |
/** |
31 | 32 |
* Created by claudio on 20/10/2016. |
... | ... | |
51 | 52 |
return and( |
52 | 53 |
eq("parentDatasourceId", dsId), |
53 | 54 |
eq("system:profileFamily", "aggregator"), |
54 |
eq("system:isCompletedSuccessfully", "true")); |
|
55 |
eq("system:isCompletedSuccessfully", "true"), |
|
56 |
regex("system:wfName", "(collect|transform)", "i")); |
|
55 | 57 |
} |
56 | 58 |
|
57 | 59 |
private synchronized MongoCollection<Document> getCollection() { |
... | ... | |
65 | 67 |
@Cacheable("datasources-mongo-cache") |
66 | 68 |
public List<AggregationInfo> getAggregationHistory(final String dsId) throws ApiException { |
67 | 69 |
|
68 |
log.warn("getAggregationHistory(): not using cache");
|
|
70 |
log.warn(String.format("getAggregationHistory(dsId = %s): not using cache", dsId));
|
|
69 | 71 |
|
70 | 72 |
final Bson query = getQuery(dsId); |
71 |
|
|
72 | 73 |
return Utils.stream(getCollection().find(query).projection(fields).limit(limit).sort(dbo("system:startHumanDate", -1)).iterator()) |
73 | 74 |
.map(getMapper()) |
74 | 75 |
.filter(ai -> ai.getNumberOfRecords() >= 0 && StringUtils.isNotBlank(ai.getDate())) |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/clients/DatasourceDao.java | ||
---|---|---|
1 |
package eu.dnetlib.datasource.publisher.clients; |
|
2 |
|
|
3 |
import java.util.List; |
|
4 |
import java.util.Queue; |
|
5 |
import java.util.concurrent.*; |
|
6 |
import javax.annotation.Resource; |
|
7 |
|
|
8 |
import com.google.common.collect.Lists; |
|
9 |
import com.google.common.util.concurrent.*; |
|
10 |
import eu.dnetlib.datasource.publisher.ApiException; |
|
11 |
import eu.dnetlib.datasource.publisher.clients.utils.IndexDsInfo; |
|
12 |
import eu.dnetlib.datasource.publisher.clients.utils.IndexRecordsInfo; |
|
13 |
import eu.dnetlib.datasource.publisher.model.AggregationInfo; |
|
14 |
import eu.dnetlib.datasource.publisher.model.AggregationStage; |
|
15 |
import eu.dnetlib.datasource.publisher.model.DatasourceResponse; |
|
16 |
import eu.dnetlib.datasource.publisher.model.db.*; |
|
17 |
import eu.dnetlib.datasource.publisher.model.db.SearchInterfacesEntry; |
|
18 |
import eu.dnetlib.datasource.publisher.repository.*; |
|
19 |
import org.apache.commons.lang.StringUtils; |
|
20 |
import org.apache.commons.lang3.exception.ExceptionUtils; |
|
21 |
import org.apache.commons.logging.Log; |
|
22 |
import org.apache.commons.logging.LogFactory; |
|
23 |
import org.apache.http.HttpStatus; |
|
24 |
import org.springframework.beans.factory.annotation.Autowired; |
|
25 |
import org.springframework.beans.factory.annotation.Value; |
|
26 |
import org.springframework.data.domain.Pageable; |
|
27 |
import org.springframework.data.domain.Slice; |
|
28 |
import org.springframework.util.concurrent.ListenableFuture; |
|
29 |
import org.springframework.util.concurrent.ListenableFutureCallback; |
|
30 |
|
|
31 |
/** |
|
32 |
* Created by claudio on 20/10/2016. |
|
33 |
*/ |
|
34 |
public class DatasourceDao { |
|
35 |
|
|
36 |
private static final Log log = LogFactory.getLog(DatasourceDao.class); |
|
37 |
|
|
38 |
@Autowired |
|
39 |
private MongoLoggerClient mongoLoggerClient; |
|
40 |
|
|
41 |
@Autowired |
|
42 |
private DatasourceIndexClient datasourceIndexClient; |
|
43 |
|
|
44 |
@Autowired |
|
45 |
private DatasourceRepository dsRepository; |
|
46 |
|
|
47 |
@Autowired |
|
48 |
private SearchInterfaceRepository searchInterfaceRepository; |
|
49 |
|
|
50 |
@Autowired |
|
51 |
private CountryTermRepository countryTermRepository; |
|
52 |
|
|
53 |
@Autowired |
|
54 |
private TypologyTermRepository typologyTermRepository; |
|
55 |
|
|
56 |
@Autowired |
|
57 |
private ProtocolTermRepository protocolTermRepository; |
|
58 |
|
|
59 |
@Autowired |
|
60 |
private CompatibilityTermRepository compatibilityTermRepository; |
|
61 |
|
|
62 |
@Autowired |
|
63 |
private ActivationTermRepository activationTermRepository; |
|
64 |
|
|
65 |
@Autowired |
|
66 |
private ApiRepository apiRepository; |
|
67 |
|
|
68 |
@Resource(name = "datasourceIsLookupClient") |
|
69 |
private ISLookupClient isLookupClient; |
|
70 |
|
|
71 |
private ListeningExecutorService service; |
|
72 |
|
|
73 |
private final static int WORKERS = 100; |
|
74 |
|
|
75 |
@Value("${datasource.publisher.timeout}") |
|
76 |
private int timeout = 10; |
|
77 |
|
|
78 |
public DatasourceDao() { |
|
79 |
service = MoreExecutors.listeningDecorator( |
|
80 |
new ScheduledThreadPoolExecutor(WORKERS, |
|
81 |
new ThreadFactoryBuilder().setNameFormat("datasource-info-retriever-%d").build())); |
|
82 |
} |
|
83 |
|
|
84 |
public List<String> listIds(final Pageable pageable) throws ApiException { |
|
85 |
return dsRepository.findAll(pageable) |
|
86 |
.map(d -> d.getId()) |
|
87 |
.getContent(); |
|
88 |
} |
|
89 |
|
|
90 |
public List<DatasourceResponse> searchByName(final String name, final Pageable pageable) { |
|
91 |
|
|
92 |
final List<DatasourceResponse> datasourceResponse = Lists.newArrayList(); |
|
93 |
|
|
94 |
final CountDownLatch outerLatch = new CountDownLatch(3); |
|
95 |
final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
|
96 |
|
|
97 |
log.debug(String.format("search ds by name '%s'", name)); |
|
98 |
final ListenableFuture<Slice<Datasource>> c = |
|
99 |
dsRepository.findByOfficialnameContainingOrEnglishnameContainingAllIgnoreCase(name, name, pageable); |
|
100 |
c.addCallback(getSearchCallback(outerLatch, errors, datasourceResponse)); |
|
101 |
|
|
102 |
waitLatch(outerLatch, errors, timeout); |
|
103 |
|
|
104 |
return datasourceResponse; |
|
105 |
} |
|
106 |
|
|
107 |
public List<DatasourceResponse> searchByCountry(final String country, final Pageable pageable) { |
|
108 |
|
|
109 |
final List<DatasourceResponse> datasourceResponse = Lists.newArrayList(); |
|
110 |
|
|
111 |
final CountDownLatch outerLatch = new CountDownLatch(3); |
|
112 |
final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
|
113 |
|
|
114 |
log.debug(String.format("search ds by country '%s'", country)); |
|
115 |
//dsRepository.findByOrganizationsCountryIgnoreCase(country, pageable).addCallback(getSearchCallback(outerLatch, errors, datasourceResponse)); |
|
116 |
|
|
117 |
waitLatch(outerLatch, errors, timeout); |
|
118 |
|
|
119 |
return datasourceResponse; |
|
120 |
} |
|
121 |
|
|
122 |
public List<DatasourceResponse> searchByContactemail(final String email, final Pageable pageable) { |
|
123 |
final List<DatasourceResponse> datasourceResponse = Lists.newArrayList(); |
|
124 |
|
|
125 |
final CountDownLatch outerLatch = new CountDownLatch(3); |
|
126 |
final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
|
127 |
|
|
128 |
log.debug(String.format("search ds by email '%s'", email)); |
|
129 |
dsRepository.findByContactemailContainingAllIgnoreCase(email, pageable).addCallback(getSearchCallback(outerLatch, errors, datasourceResponse)); |
|
130 |
|
|
131 |
waitLatch(outerLatch, errors, timeout); |
|
132 |
|
|
133 |
return datasourceResponse; |
|
134 |
} |
|
135 |
|
|
136 |
private ListenableFutureCallback<Slice<Datasource>> getSearchCallback(final CountDownLatch outerLatch, |
|
137 |
final Queue<Throwable> errors, |
|
138 |
final List<DatasourceResponse> datasourceResponse) { |
|
139 |
|
|
140 |
return new ListenableFutureCallback<Slice<Datasource>>() { |
|
141 |
|
|
142 |
@Override |
|
143 |
public void onSuccess(final Slice<Datasource> datasources) { |
|
144 |
datasources.forEach(d -> { |
|
145 |
final DatasourceResponse response = new DatasourceResponse(); |
|
146 |
response.setDatasource(d); |
|
147 |
getAggregationHistory(d.getId(), outerLatch, errors, response); |
|
148 |
getIndexDsInfo(d.getId(), outerLatch, errors, response); |
|
149 |
datasourceResponse.add(response); |
|
150 |
}); |
|
151 |
outerLatch.countDown(); |
|
152 |
} |
|
153 |
|
|
154 |
@Override |
|
155 |
public void onFailure(final Throwable e) { |
|
156 |
errors.offer(e); |
|
157 |
outerLatch.countDown(); |
|
158 |
} |
|
159 |
}; |
|
160 |
} |
|
161 |
|
|
162 |
public ClientResponse getInfo(final String dsId) { |
|
163 |
|
|
164 |
final CountDownLatch outerLatch = new CountDownLatch(3); |
|
165 |
final Queue<Throwable> errors = new ConcurrentLinkedQueue<>(); |
|
166 |
final DatasourceResponse datasourceResponse = new DatasourceResponse(); |
|
167 |
|
|
168 |
getAggregationHistory(dsId, outerLatch, errors, datasourceResponse); |
|
169 |
|
|
170 |
dsRepository.findOneById(dsId).addCallback(new ListenableFutureCallback<Datasource>() { |
|
171 |
@Override |
|
172 |
public void onSuccess(final Datasource datasource) { |
|
173 |
datasourceResponse.setDatasource(datasource); |
|
174 |
outerLatch.countDown(); |
|
175 |
} |
|
176 |
|
|
177 |
@Override |
|
178 |
public void onFailure(final Throwable e) { |
|
179 |
log.error(ExceptionUtils.getStackTrace(e)); |
|
180 |
errors.offer(e); |
|
181 |
outerLatch.countDown(); |
|
182 |
} |
|
183 |
}); |
|
184 |
|
|
185 |
getIndexDsInfo(dsId, outerLatch, errors, datasourceResponse); |
|
186 |
|
|
187 |
waitLatch(outerLatch, errors, timeout); |
|
188 |
|
|
189 |
/* |
|
190 |
if (!errors.isEmpty()) { |
|
191 |
datasourceResponse.getResponseHeader().setError(Joiner.on("\n").skipNulls().join(errors.stream().map(e -> e.getMessage()).collect(Collectors.toList()))); |
|
192 |
log.error(Joiner.on("\n").skipNulls().join(errors.stream().map(e -> ExceptionUtils.getFullStackTrace(e)).collect(Collectors.toList()))); |
|
193 |
} |
|
194 |
*/ |
|
195 |
|
|
196 |
return new ClientResponse().datasourceInfo(datasourceResponse).errors(errors); |
|
197 |
} |
|
198 |
|
|
199 |
public void setManaged(final String id, final boolean managed) { |
|
200 |
log.info(String.format("setting managed = '%s' for ds '%s'", managed, id)); |
|
201 |
dsRepository.setManaged(id, managed); |
|
202 |
} |
|
203 |
|
|
204 |
public List<SearchInterfacesEntry> searchInterface(final String field, final String value) { |
|
205 |
switch (field) { |
|
206 |
case "__SEARCH__": |
|
207 |
return searchInterfaceRepository |
|
208 |
.findByRepoidContainingOrRepoNameContainingOrAlternativeNameContainingOrRepoPrefixContainingOrRepoOrganizationContainingAllIgnoreCase( |
|
209 |
value, value, value, value, value); |
|
210 |
case "country": |
|
211 |
break; |
|
212 |
case "type": |
|
213 |
break; |
|
214 |
case "protocol": |
|
215 |
break; |
|
216 |
case "compliance": |
|
217 |
break; |
|
218 |
case "active": |
|
219 |
break; |
|
220 |
default: |
|
221 |
throw new IllegalArgumentException(""); |
|
222 |
} |
|
223 |
return null; |
|
224 |
} |
|
225 |
|
|
226 |
public List<CountryTerm> browseCountries() { |
|
227 |
return countryTermRepository.findAll(); |
|
228 |
} |
|
229 |
|
|
230 |
public List<TypologyTerm> browseTypologies() { |
|
231 |
return typologyTermRepository.findAll(); |
|
232 |
} |
|
233 |
|
|
234 |
public List<ProtocolTerm> browseProtocols() { |
|
235 |
return protocolTermRepository.findAll(); |
|
236 |
} |
|
237 |
|
|
238 |
public List<CompatibilityTerm> browseCompatibility() { |
|
239 |
return compatibilityTermRepository.findAll(); |
|
240 |
} |
|
241 |
|
|
242 |
public List<ActivationTerm> browseActivation() { |
|
243 |
return activationTermRepository.findAll(); |
|
244 |
} |
|
245 |
|
|
246 |
public List<Api> getApi(final String dsId) { |
|
247 |
return apiRepository.findByDatasource(dsId); |
|
248 |
} |
|
249 |
|
|
250 |
public void deleteApi(final String apiId) { |
|
251 |
apiRepository.delete(apiId); |
|
252 |
log.info(String.format("deleted api '%s'", apiId)); |
|
253 |
} |
|
254 |
|
|
255 |
public void addApi(final Api api) { |
|
256 |
|
|
257 |
if (StringUtils.isBlank(api.getId())) { |
|
258 |
api.setId(ApiRepository.createId(api)); |
|
259 |
log.info(String.format("missing api id, created '%s'")); |
|
260 |
} |
|
261 |
|
|
262 |
apiRepository.save(api); |
|
263 |
} |
|
264 |
|
|
265 |
public boolean exist(final Datasource d) throws ApiException { |
|
266 |
try { |
|
267 |
return dsRepository.findOneById(d.getId()).get() != null; |
|
268 |
} catch (Exception e) { |
|
269 |
log.error(e); |
|
270 |
throw new ApiException(HttpStatus.SC_INTERNAL_SERVER_ERROR, String.format("error retrieving datasource information '%s'", d.getId()), e); |
|
271 |
} |
|
272 |
} |
|
273 |
|
|
274 |
public Datasource save(final Datasource d) { |
|
275 |
log.info(String.format("saving datasource '%s'", d.getId())); |
|
276 |
final Datasource datasource = dsRepository.save(d); |
|
277 |
log.info(String.format("saved datasource '%s'", datasource.getId())); |
|
278 |
return datasource; |
|
279 |
} |
|
280 |
|
|
281 |
public void updateOfficialName(final String dsId, final String officialname) { |
|
282 |
dsRepository.setOfficialname(dsId, officialname); |
|
283 |
log.info(String.format("updated datasource '%s' with officialname '%s'", dsId, officialname)); |
|
284 |
} |
|
285 |
|
|
286 |
public void updateEnglishName(final String dsId, final String englishname) { |
|
287 |
dsRepository.setEnglishname(dsId, englishname); |
|
288 |
log.info(String.format("updated datasource '%s' with englishname '%s'", dsId, englishname)); |
|
289 |
} |
|
290 |
|
|
291 |
public void updateLatitude(final String dsId, final Double latitude) { |
|
292 |
dsRepository.setLatitude(dsId, latitude); |
|
293 |
log.info(String.format("updated datasource '%s' with latitude '%s'", dsId, latitude)); |
|
294 |
} |
|
295 |
|
|
296 |
public void updateLongitude(final String dsId, final Double longitude) { |
|
297 |
dsRepository.setLongitude(dsId, longitude); |
|
298 |
log.info(String.format("updated datasource '%s' with longitude '%s'", dsId, longitude)); |
|
299 |
} |
|
300 |
|
|
301 |
private void getIndexDsInfo(final String dsId, |
|
302 |
final CountDownLatch outerLatch, |
|
303 |
final Queue<Throwable> errors, |
|
304 |
final DatasourceResponse datasourceResponse) { |
|
305 |
Futures.addCallback( |
|
306 |
service.submit(() -> isLookupClient.calculateCurrentIndexDsInfo()), |
|
307 |
new FutureCallback<IndexDsInfo>() { |
|
308 |
|
|
309 |
public void onSuccess(final IndexDsInfo info) { |
|
310 |
|
|
311 |
final CountDownLatch innerLatch = new CountDownLatch(1); |
|
312 |
|
|
313 |
Futures.addCallback( |
|
314 |
service.submit(() -> datasourceIndexClient.getIndexInfo(dsId, info)), |
|
315 |
new FutureCallback<IndexRecordsInfo>() { |
|
316 |
public void onSuccess(IndexRecordsInfo info) { |
|
317 |
datasourceResponse.setIndexRecords(info.getCount()).setLastIndexingDate(info.getDate()); |
|
318 |
innerLatch.countDown(); |
|
319 |
} |
|
320 |
public void onFailure(Throwable e) { |
|
321 |
errors.offer(e); |
|
322 |
innerLatch.countDown(); |
|
323 |
} |
|
324 |
}); |
|
325 |
waitLatch(innerLatch, errors, timeout); |
|
326 |
|
|
327 |
outerLatch.countDown(); |
|
328 |
} |
|
329 |
|
|
330 |
public void onFailure(final Throwable e) { |
|
331 |
log.error(ExceptionUtils.getStackTrace(e)); |
|
332 |
errors.offer(e); |
|
333 |
outerLatch.countDown(); |
|
334 |
} |
|
335 |
}); |
|
336 |
} |
|
337 |
|
|
338 |
private void getAggregationHistory(final String dsId, |
|
339 |
final CountDownLatch outerLatch, |
|
340 |
final Queue<Throwable> errors, |
|
341 |
final DatasourceResponse datasourceResponse) { |
|
342 |
Futures.addCallback( |
|
343 |
service.submit(() -> mongoLoggerClient.getAggregationHistory(dsId)), |
|
344 |
new FutureCallback<List<AggregationInfo>>() { |
|
345 |
public void onSuccess(List<AggregationInfo> info) { |
|
346 |
setAggregationHistory(datasourceResponse, info); |
|
347 |
outerLatch.countDown(); |
|
348 |
} |
|
349 |
public void onFailure(Throwable e) { |
|
350 |
log.error(ExceptionUtils.getStackTrace(e)); |
|
351 |
errors.offer(e); |
|
352 |
outerLatch.countDown(); |
|
353 |
} |
|
354 |
}); |
|
355 |
} |
|
356 |
|
|
357 |
private void setAggregationHistory(DatasourceResponse datasourceResponse, final List<AggregationInfo> info) { |
|
358 |
datasourceResponse.setAggregationHistory(info); |
|
359 |
if (!info.isEmpty()) { |
|
360 |
datasourceResponse |
|
361 |
.setLastCollection(info.stream().filter(a -> AggregationStage.COLLECT.equals(a.getAggregationStage())).findFirst().get()) |
|
362 |
.setLastTransformation(info.stream().filter(a -> AggregationStage.TRANSFORM.equals(a.getAggregationStage())).findFirst().get()); |
|
363 |
} |
|
364 |
} |
|
365 |
|
|
366 |
private void waitLatch(final CountDownLatch latch, final Queue<Throwable> errors, final int waitSeconds) { |
|
367 |
try { |
|
368 |
if (!latch.await(waitSeconds, TimeUnit.SECONDS)) { |
|
369 |
errors.offer(new TimeoutException("Waiting for requests to complete has timed out.")); |
|
370 |
} |
|
371 |
} catch (final InterruptedException e) { |
|
372 |
errors.offer(e); |
|
373 |
} |
|
374 |
} |
|
375 |
|
|
376 |
} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/DatasourcesApi.java | ||
---|---|---|
5 | 5 |
import eu.dnetlib.datasource.publisher.model.BrowseTerm; |
6 | 6 |
import eu.dnetlib.datasource.publisher.model.DatasourceResponse; |
7 | 7 |
import eu.dnetlib.datasource.publisher.model.Response; |
8 |
import eu.dnetlib.datasource.publisher.model.db.Api; |
|
9 |
import eu.dnetlib.datasource.publisher.model.db.Datasource; |
|
8 | 10 |
import eu.dnetlib.datasource.publisher.model.db.SearchInterfacesEntry; |
9 |
import io.swagger.annotations.*; |
|
11 |
import io.swagger.annotations.ApiOperation; |
|
12 |
import io.swagger.annotations.ApiResponse; |
|
13 |
import io.swagger.annotations.ApiResponses; |
|
10 | 14 |
|
11 |
@Api(value = "datasources", description = "the datasource manager API") |
|
15 |
@io.swagger.annotations.Api(value = "datasources", description = "the datasource manager API")
|
|
12 | 16 |
public interface DatasourcesApi { |
13 | 17 |
|
14 | 18 |
@ApiOperation(value = "list identifiers", notes = "List the Datasource identifiers.", response = List.class) |
15 | 19 |
@ApiResponses(value = { |
16 |
@ApiResponse(code = 200, message = "OK", response = List.class),
|
|
20 |
@ApiResponse(code = 200, message = "OK", response = String[].class),
|
|
17 | 21 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
18 | 22 |
List<String> listIds(int page, int size) throws ApiException; |
19 | 23 |
|
20 | 24 |
@ApiOperation(value = "get datasource by id", notes = "Returns Datasource details.", response = DatasourceResponse.class) |
21 | 25 |
@ApiResponses(value = { |
22 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse.class), |
|
26 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse[].class),
|
|
23 | 27 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
24 | 28 |
DatasourceResponse getDs(String id); |
25 | 29 |
|
26 |
@ApiOperation(value = "search datasources by name", notes = "Returns list of Datasource details.", response = DatasourceResponse.class) |
|
30 |
@ApiOperation(value = "search datasources by name", notes = "Returns list of Datasource details.", response = DatasourceResponse[].class)
|
|
27 | 31 |
@ApiResponses(value = { |
28 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse.class), |
|
32 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse[].class),
|
|
29 | 33 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
30 | 34 |
List<DatasourceResponse> searchByName(String name, int page, int size); |
31 | 35 |
|
32 |
@ApiOperation(value = "search datasources by contact email", notes = "Returns list of Datasource details.", response = DatasourceResponse.class) |
|
36 |
@ApiOperation(value = "search datasources by contact email", notes = "Returns list of Datasource details.", response = DatasourceResponse[].class)
|
|
33 | 37 |
@ApiResponses(value = { |
34 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse.class), |
|
38 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse[].class),
|
|
35 | 39 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
36 | 40 |
List<DatasourceResponse> searchByContactemail(String contactemail, int page, int size); |
37 | 41 |
|
38 |
@ApiOperation(value = "search datasources by country", notes = "Returns list of Datasource details.", response = DatasourceResponse.class) |
|
42 |
@ApiOperation(value = "search datasources by country", notes = "Returns list of Datasource details.", response = DatasourceResponse[].class)
|
|
39 | 43 |
@ApiResponses(value = { |
40 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse.class), |
|
44 |
@ApiResponse(code = 200, message = "OK", response = DatasourceResponse[].class),
|
|
41 | 45 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
42 | 46 |
List<DatasourceResponse> searchByCountry(String country, int page, int size); |
43 | 47 |
|
44 |
@ApiOperation(value = "search among datasource APIs", notes = "Returns Datasource Api details.", response = SearchInterfacesEntry.class) |
|
48 |
@ApiOperation(value = "search among datasource APIs", notes = "Returns Datasource Api details.", response = SearchInterfacesEntry[].class)
|
|
45 | 49 |
@ApiResponses(value = { |
46 |
@ApiResponse(code = 200, message = "OK", response = SearchInterfacesEntry.class), |
|
50 |
@ApiResponse(code = 200, message = "OK", response = SearchInterfacesEntry[].class),
|
|
47 | 51 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
48 | 52 |
List<SearchInterfacesEntry> searchInterface(String field, String value); |
49 | 53 |
|
50 |
@ApiOperation(value = "terms and count for the given field", notes = "Returns the list of BrowseTerms.", response = BrowseTerm.class) |
|
54 |
@ApiOperation(value = "terms and count for the given field", notes = "Returns the list of BrowseTerms.", response = BrowseTerm[].class)
|
|
51 | 55 |
@ApiResponses(value = { |
52 |
@ApiResponse(code = 200, message = "OK", response = BrowseTerm.class), |
|
56 |
@ApiResponse(code = 200, message = "OK", response = BrowseTerm[].class),
|
|
53 | 57 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
54 | 58 |
List<? extends BrowseTerm> browseField(String field) throws ApiException; |
55 | 59 |
|
60 |
@ApiOperation(value = "get the list of API for a given datasource", notes = "Returns the list of API for a given datasource.", httpMethod = "GET", response = Api[].class) |
|
61 |
@ApiResponses(value = { |
|
62 |
@ApiResponse(code = 200, message = "OK", response = Api[].class), |
|
63 |
@ApiResponse(code = 500, message = "unexpected error", response = Response.class) }) |
|
64 |
List<Api> getApi(String dsId) throws ApiException; |
|
65 |
|
|
66 |
@ApiOperation(value = "delete an API", notes = "delete an API", httpMethod = "DELETE") |
|
67 |
@ApiResponses(value = { |
|
68 |
@ApiResponse(code = 200, message = "OK"), |
|
69 |
@ApiResponse(code = 500, message = "unexpected error") }) |
|
70 |
void deleteApi(String apiId) throws ApiException; |
|
71 |
|
|
72 |
@ApiOperation(value = "adds an API to one Datasource", notes = "adds an API to one Datasource", httpMethod = "POST") |
|
73 |
@ApiResponses(value = { |
|
74 |
@ApiResponse(code = 200, message = "OK"), |
|
75 |
@ApiResponse(code = 500, message = "unexpected error") }) |
|
76 |
void addApi(Api api) throws ApiException; |
|
77 |
|
|
56 | 78 |
@ApiOperation(value = "set the managed status for a given datasource", notes = "set the managed status for a given datasource", httpMethod = "POST") |
57 | 79 |
@ApiResponses(value = { |
58 | 80 |
@ApiResponse(code = 200, message = "OK"), |
59 | 81 |
@ApiResponse(code = 500, message = "unexpected error") }) |
60 | 82 |
void setManaged(String id, boolean managed); |
61 | 83 |
|
84 |
@ApiOperation(value = "adds a new datasource", notes = "adds a new datasource", httpMethod = "POST") |
|
85 |
@ApiResponses(value = { |
|
86 |
@ApiResponse(code = 200, message = "OK"), |
|
87 |
@ApiResponse(code = 500, message = "unexpected error") }) |
|
88 |
void saveDatasource(Datasource datasource) throws ApiException; |
|
89 |
|
|
90 |
@ApiOperation(value = "updates a datasource official name", notes = "updates a datasource official name", httpMethod = "POST") |
|
91 |
@ApiResponses(value = { |
|
92 |
@ApiResponse(code = 200, message = "OK"), |
|
93 |
@ApiResponse(code = 500, message = "unexpected error") }) |
|
94 |
void updateOfficialname(String dsId, String officialname) throws ApiException; |
|
95 |
|
|
96 |
@ApiOperation(value = "updates a datasource english name", notes = "updates a datasource english name", httpMethod = "POST") |
|
97 |
@ApiResponses(value = { |
|
98 |
@ApiResponse(code = 200, message = "OK"), |
|
99 |
@ApiResponse(code = 500, message = "unexpected error") }) |
|
100 |
void updateEnglishname(String dsId, String english) throws ApiException; |
|
101 |
|
|
102 |
@ApiOperation(value = "updates a datasource latitude", notes = "updates a datasource latitude", httpMethod = "POST") |
|
103 |
@ApiResponses(value = { |
|
104 |
@ApiResponse(code = 200, message = "OK"), |
|
105 |
@ApiResponse(code = 500, message = "unexpected error") }) |
|
106 |
void updateLatitude(String dsId, Double latitude) throws ApiException; |
|
107 |
|
|
108 |
@ApiOperation(value = "updates a datasource longitude", notes = "updates a datasource longitude", httpMethod = "POST") |
|
109 |
@ApiResponses(value = { |
|
110 |
@ApiResponse(code = 200, message = "OK"), |
|
111 |
@ApiResponse(code = 500, message = "unexpected error") }) |
|
112 |
void updateLongitude(String dsId, Double longitude) throws ApiException; |
|
113 |
|
|
62 | 114 |
} |
modules/dnet-datasource-rest-api/trunk/src/main/java/eu/dnetlib/datasource/publisher/DatasourcesApiController.java | ||
---|---|---|
4 | 4 |
|
5 | 5 |
import eu.dnetlib.common.rmi.DNetRestDocumentation; |
6 | 6 |
import eu.dnetlib.datasource.publisher.clients.ClientResponse; |
7 |
import eu.dnetlib.datasource.publisher.clients.DatasourceInfoRetriever;
|
|
7 |
import eu.dnetlib.datasource.publisher.clients.DatasourceDao;
|
|
8 | 8 |
import eu.dnetlib.datasource.publisher.model.BrowseTerm; |
9 | 9 |
import eu.dnetlib.datasource.publisher.model.DatasourceResponse; |
10 |
import eu.dnetlib.datasource.publisher.model.db.Api; |
|
11 |
import eu.dnetlib.datasource.publisher.model.db.Datasource; |
|
10 | 12 |
import eu.dnetlib.datasource.publisher.model.db.SearchInterfacesEntry; |
13 |
|
|
14 |
import org.apache.commons.lang.StringUtils; |
|
11 | 15 |
import org.apache.commons.logging.Log; |
12 | 16 |
import org.apache.commons.logging.LogFactory; |
13 | 17 |
import org.apache.http.HttpStatus; |
... | ... | |
22 | 26 |
private static final Log log = LogFactory.getLog(DatasourcesApiController.class); |
23 | 27 |
|
24 | 28 |
@Autowired |
25 |
private DatasourceInfoRetriever dsInfoRetriever;
|
|
29 |
private DatasourceDao dsDao;
|
|
26 | 30 |
|
27 | 31 |
@Override |
28 | 32 |
@RequestMapping(value = "/ds/list/{page}/{size}", produces = { "application/json" }, method = RequestMethod.GET) |
29 | 33 |
public List<String> listIds(@PathVariable int page, @PathVariable int size) throws ApiException { |
30 |
return dsInfoRetriever.listIds(new PageRequest(page, size));
|
|
34 |
return dsDao.listIds(new PageRequest(page, size));
|
|
31 | 35 |
} |
32 | 36 |
|
33 | 37 |
@Override |
... | ... | |
38 | 42 |
log.debug(String.format("getDatasourceInfo(dsId = %s)", id)); |
39 | 43 |
} |
40 | 44 |
|
41 |
final ClientResponse clientResponse = dsInfoRetriever.getInfo(id);
|
|
45 |
final ClientResponse clientResponse = dsDao.getInfo(id);
|
|
42 | 46 |
return clientResponse.getDatasourceResponse(); |
43 | 47 |
} |
44 | 48 |
|
... | ... | |
46 | 50 |
@RequestMapping(value = "/ds/search/name/{page}/{size}", produces = { "application/json" }, method = RequestMethod.GET) |
47 | 51 |
public List<DatasourceResponse> searchByName( |
48 | 52 |
@RequestParam final String name, @PathVariable final int page, @PathVariable final int size) { |
49 |
return dsInfoRetriever.searchByName(name, new PageRequest(page, size));
|
|
53 |
return dsDao.searchByName(name, new PageRequest(page, size));
|
|
50 | 54 |
} |
51 | 55 |
|
52 | 56 |
@Override |
53 | 57 |
@RequestMapping(value = "/ds/search/email/{page}/{size}", produces = { "application/json" }, method = RequestMethod.GET) |
54 | 58 |
public List<DatasourceResponse> searchByContactemail( |
55 | 59 |
@RequestParam final String contactemail, @PathVariable final int page, @PathVariable final int size) { |
56 |
return dsInfoRetriever.searchByContactemail(contactemail, new PageRequest(page, size));
|
|
60 |
return dsDao.searchByContactemail(contactemail, new PageRequest(page, size));
|
|
57 | 61 |
} |
58 | 62 |
|
59 | 63 |
@Override |
60 | 64 |
@RequestMapping(value = "/ds/search/country/{page}/{size}", produces = { "application/json" }, method = RequestMethod.GET) |
61 | 65 |
public List<DatasourceResponse> searchByCountry( |
62 | 66 |
@RequestParam final String country, @PathVariable final int page, @PathVariable final int size) { |
63 |
return dsInfoRetriever.searchByCountry(country, new PageRequest(page, size));
|
|
67 |
return dsDao.searchByCountry(country, new PageRequest(page, size));
|
|
64 | 68 |
} |
65 | 69 |
|
66 | 70 |
@Override |
67 | 71 |
@RequestMapping(value = "/api/search/{field}", produces = { "application/json" }, method = RequestMethod.GET) |
68 | 72 |
public List<SearchInterfacesEntry> searchInterface(@PathVariable final String field, @RequestParam final String value) { |
69 |
return dsInfoRetriever.searchInterface(field, value);
|
|
73 |
return dsDao.searchInterface(field, value);
|
|
70 | 74 |
} |
71 | 75 |
|
72 | 76 |
@Override |
... | ... | |
74 | 78 |
public List<? extends BrowseTerm> browseField(@PathVariable final String field) throws ApiException { |
75 | 79 |
switch (field) { |
76 | 80 |
case "country": |
77 |
return dsInfoRetriever.browseCountries();
|
|
81 |
return dsDao.browseCountries();
|
|
78 | 82 |
case "typology": |
79 |
return dsInfoRetriever.browseTypologies();
|
|
83 |
return dsDao.browseTypologies();
|
|
80 | 84 |
case "protocol": |
81 |
return dsInfoRetriever.browseProtocols();
|
|
85 |
return dsDao.browseProtocols();
|
|
82 | 86 |
case "compatibility": |
83 |
return dsInfoRetriever.browseCompatibility();
|
|
87 |
return dsDao.browseCompatibility();
|
|
84 | 88 |
case "activation": |
85 |
return dsInfoRetriever.browseActivation();
|
|
89 |
return dsDao.browseActivation();
|
|
86 | 90 |
default: |
87 | 91 |
throw new ApiException(HttpStatus.SC_BAD_REQUEST, String.format("unsupported browse field '%s'", field)); |
88 | 92 |
} |
89 | 93 |
} |
90 | 94 |
|
91 | 95 |
@Override |
96 |
@RequestMapping(value = "/ds/api/{dsId}", produces = { "application/json" }, method = RequestMethod.GET) |
|
97 |
public List<Api> getApi(@PathVariable final String dsId) throws ApiException { |
|
98 |
return dsDao.getApi(dsId); |
|
99 |
} |
|
100 |
|
|
101 |
@Override |
|
102 |
@RequestMapping(value = "/ds/api/{dsId}", method = RequestMethod.DELETE) |
|
103 |
public void deleteApi(@PathVariable final String apiId) throws ApiException { |
|
104 |
dsDao.deleteApi(apiId); |
|
105 |
} |
|
106 |
|
|
107 |
@Override |
|
108 |
@RequestMapping(value = "/ds/api/add", method = RequestMethod.POST) |
|
109 |
public void addApi(@RequestParam final Api api) throws ApiException { |
|
110 |
if (StringUtils.isBlank(api.getDatasource())) { |
|
111 |
throw new ApiException(HttpStatus.SC_BAD_REQUEST, "missing datasource id"); |
|
112 |
} |
|
113 |
dsDao.addApi(api); |
|
114 |
} |
|
115 |
|
|
116 |
@Override |
|
92 | 117 |
@RequestMapping(value = "/ds/manage", method = RequestMethod.POST) |
93 | 118 |
public void setManaged(@RequestParam final String id, @RequestParam final boolean managed) { |
94 |
dsInfoRetriever.setManaged(id, managed);
|
|
119 |
dsDao.setManaged(id, managed);
|
|
95 | 120 |
} |
96 | 121 |
|
122 |
@Override |
|
123 |
@RequestMapping(value = "/ds/add", method = RequestMethod.POST) |
|
124 |
public void saveDatasource(@RequestBody final Datasource datasource) throws ApiException { |
|
125 |
if (dsDao.exist(datasource)) { //TODO further check that the DS doesn't have any API |
Also available in: Unified diff
fine grained operations