D-Net

{"type_source": "SVN", "goal": "package -U -T 4C source:jar", "url": "http://svn-public.driver.research-infrastructures.eu/driver/dnet45/modules/dnet-hadoop-service-rmi/trunk/", "deploy_repository": "dnet45-snapshots", "version": "4", "mail": "sandro.labruzzo@isti.cnr.it,michele.artini@isti.cnr.it, claudio.atzori@isti.cnr.it, alessia.bardi@isti.cnr.it", "deploy_repository_url": "http://maven.research-infrastructures.eu/nexus/content/repositories/dnet45-snapshots", "name": "dnet-hadoop-service-rmi"}

package eu.dnetlib.data.hadoop.rmi.hbase.schema;

import java.io.IOException;

import java.io.InputStream;

import org.apache.commons.io.IOUtils;

import org.junit.Test;

import static org.junit.Assert.assertFalse;

import static org.junit.Assert.assertNotNull;

/**

 * Created by claudio on 11/11/15.

 */

public class HBaseTableDescriptorTest {

	@Test

	public void testSerialise() throws IOException {

		final InputStream is = getClass().getResourceAsStream("hbaseTable.json");

		final String json = IOUtils.toString(is);

		final HBaseTableDescriptor desc = HBaseTableDescriptor.fromJSON(json);

		assertNotNull(desc);

		assertNotNull(desc.getColumns());

		assertNotNull(desc.getRegions());

		assertFalse(desc.getColumns().isEmpty());

		assertFalse(desc.getRegions().isEmpty());

		System.out.println(desc.toString());

	}

}

package eu.dnetlib.data.hadoop.rmi.hbase;

import java.util.List;

import com.google.common.collect.Lists;

import org.junit.Test;

import static org.junit.Assert.assertEquals;

/**

 * Created by claudio on 23/10/15.

 */

public class HBaseRowDescriptorTest {

	@Test

	public void testSerialisation() {

		HBaseRowDescriptor d1 = new HBaseRowDescriptor();

		d1.setRowKey("k1");

		d1.getColumns().add(new Column("c1", l("q1", "q2")));

		d1.getColumns().add(new Column("c2", l("q1", "q2")));

		final String d1s = d1.toString();

		System.out.println(d1s);

		final HBaseRowDescriptor d2 = HBaseRowDescriptor.fromJSON(d1s);

		assertEquals(d1.toString(), d2.toString());

	}

	private List<String> l(String... s) {

		return Lists.newArrayList(s);

	}

}

{

  "columns": [

	"result",

	"resultProject_outcome_isProducedBy",

	"person",

	"resultResult_similarity_hasAmongTopNSimilarDocuments",

	"resultResult_dedup_merges",

	"organizationOrganization_dedup_merges",

	"projectPerson_contactPerson_isContact",

	"personPerson_dedup_merges",

	"personPerson_coauthorship_isCoauthorOf",

	"personResult_authorship_hasAuthor",

	"organization",

	"resultProject_outcome_produces",

	"resultResult_similarity_isAmongTopNSimilarDocuments",

	"datasourceOrganization_provision_provides",

	"resultOrganization_affiliation_isAffiliatedWith",

	"organizationOrganization_dedupSimilarity_isSimilarTo",

	"datasource",

	"personPerson_dedupSimilarity_isSimilarTo",

	"resultResult_publicationDataset_isRelatedTo",

	"organizationOrganization_dedup_isMergedIn",

	"projectOrganization_participation_hasParticipant",

	"projectOrganization_participation_isParticipant",

	"project",

	"personResult_authorship_isAuthorOf",

	"resultResult_dedup_isMergedIn",

	"personPerson_dedup_isMergedIn",

	"projectPerson_contactPerson_hasContact",

	"datasourceOrganization_provision_isProvidedBy",

	"resultResult_dedupSimilarity_isSimilarTo"

  ],

  "regions": [

	{

	  "startKey": "",

	  "endKey": "30|dedup_wf_001::01f6ec93ba93d5dee29436e446a19cff"

	},

	{

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	},

	{

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	},

	{

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	},

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	},

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package eu.dnetlib.data.hadoop.rmi;

/**

 * Enum of the available HadoopBlackboardActions.

 */

public enum HadoopBlackboardActions {

	/** The submit mapreduce job. */

	SUBMIT_MAPREDUCE_JOB,

	/** The submit admin job. */

	SUBMIT_ADMIN_JOB,

	/** The kill job. */

	KILL_JOB,

	/** The submit oozie job. */

	SUBMIT_OOZIE_JOB,

	/** The import epr to hbase job. */

	IMPORT_EPR_HBASE,

	/** The delete epr from hbase job */

	DELETE_EPR_HBASE,

	/** The import epr to hdfs job */

	IMPORT_EPR_HDFS,

	/** The delete hdfs path. */

	DELETE_HDFS_PATH,

	/** The create hdfs directory. */

	CREATE_HDFS_DIR

}

package eu.dnetlib.data.hadoop.rmi.hbase.schema;

import java.util.List;

import java.util.Set;

import com.google.gson.Gson;

/**

 * Created by claudio on 11/11/15.

 */

public class HBaseTableDescriptor {

	private Set<String> columns;

	private List<HBaseTableRegionInfo> regions;

	public HBaseTableDescriptor() {

	}

	public HBaseTableDescriptor(final Set<String> columns, final List<HBaseTableRegionInfo> regions) {

		this.columns = columns;

		this.regions = regions;

	}

	public static HBaseTableDescriptor fromJSON(String json) {

		return new Gson().fromJson(json, HBaseTableDescriptor.class);

	}

	public Set<String> getColumns() {

		return columns;

	}

	public void setColumns(final Set<String> columns) {

		this.columns = columns;

	}

	public List<HBaseTableRegionInfo> getRegions() {

		return regions;

	}

	public void setRegions(final List<HBaseTableRegionInfo> regions) {

		this.regions = regions;

	}

	@Override

	public String toString() {

		return new Gson().toJson(this);

	}

}

package eu.dnetlib.data.hadoop.rmi.hbase.schema;

import com.google.gson.Gson;

/**

 * Created by claudio on 11/11/15.

 */

public class HBaseTableRegionInfo {

	private String startKey;

	private String endKey;

	public HBaseTableRegionInfo() {

	}

	public HBaseTableRegionInfo(final String startKey, final String endKey) {

		this.startKey = startKey;

		this.endKey = endKey;

	}

	public String getStartKey() {

		return startKey;

	}

	public void setStartKey(final String startKey) {

		this.startKey = startKey;

	}

	public String getEndKey() {

		return endKey;

	}

	public void setEndKey(final String endKey) {

		this.endKey = endKey;

	}

	@Override

	public String toString() {

		return new Gson().toJson(this);

	}

}

package eu.dnetlib.data.hadoop.rmi.hbase;

import java.util.List;

import javax.xml.bind.annotation.XmlRootElement;

import com.google.common.collect.Lists;

import com.google.gson.Gson;

/**

 * Created by claudio on 23/10/15.

 */

@XmlRootElement

public class HBaseRowDescriptor {

	private String rowKey;

	private List<Column> columns;

	public HBaseRowDescriptor() {

		columns = Lists.newArrayList();

	}

	public HBaseRowDescriptor(String rowKey, List<Column> columns) {

		this.rowKey = rowKey;

		this.columns = columns;

	}

	public static HBaseRowDescriptor fromJSON(String json) {

		return new Gson().fromJson(json, HBaseRowDescriptor.class);

	}

	public String getRowKey() {

		return rowKey;

	}

	public List<Column> getColumns() {

		return columns;

	}

	public void setRowKey(final String rowKey) {

		this.rowKey = rowKey;

	}

	public void setColumns(final List<Column> columns) {

		this.columns = columns;

	}

	@Override

	public String toString() {

		return new Gson().toJson(this);

	}

}

package eu.dnetlib.data.hadoop.rmi.hbase;

import java.util.List;

import javax.xml.bind.annotation.XmlRootElement;

import com.google.common.collect.Lists;

import com.google.gson.Gson;

/**

 * Created by claudio on 23/10/15.

 */

@XmlRootElement

public class Column {

	private String family;

	private List<String> qualifier;

	public Column() {

		this.qualifier = Lists.newArrayList();

	}

	public Column(final String family) {

		this.family = family;

		this.qualifier = Lists.newArrayList();

	}

	public Column(final String family, final List<String> qualifier) {

		this.family = family;

		this.qualifier = qualifier;

	}

	public String getFamily() {

		return family;

	}

	public void setFamily(final String family) {

		this.family = family;

	}

	public List<String> getQualifier() {

		return qualifier;

	}

	public void setQualifier(final List<String> qualifier) {

		this.qualifier = qualifier;

	}

	@Override

	public String toString() {

		return new Gson().toJson(this);

	}

}

package eu.dnetlib.data.hadoop.rmi;

import javax.xml.bind.annotation.XmlRootElement;

/**

 * <pre>

 * {@code

 * <hadoopJobDescriptor>

 * 	<jobName>ImportRecordsJob</jobName>

 * 	<jobDescription>map only job that maps xml metada records from a sequence file into an hbase table</jobDescription>

 * 	<id>abc</id>

 * 	<status>xyz</status>

 * </hadoopJobDescriptor>

 * }

 * </pre>

 * 

 * @author claudio

 */

@XmlRootElement

public class HadoopJobDescriptor {

	/** The id. */

	private String id;

	/** The job name. */

	private String jobName;

	/** The job description. */

	private String jobDescription;

	/** The status. */

	private String status;

	/** The start time. */

	private String startTime;

	/** The last activity. */

	private String lastActivity;

	/** The hadoop id. */

	private String hadoopId;

	/** The tracking url. */

	private String trackingUrl;

	/**

	 * Instantiates a new hadoop job descriptor.

	 */

	public HadoopJobDescriptor() {}

	/**

	 * Instantiates a new hadoop job descriptor.

	 * 

	 * @param jobName

	 *            the job name

	 * @param jobDescription

	 *            the job description

	 * @param id

	 *            the id

	 * @param status

	 *            the status

	 * @param startTime

	 *            the start time

	 * @param lastActivity

	 *            the last activity

	 * @param hadoopId

	 *            the hadoop id

	 * @param trackingUrl

	 *            the tracking url

	 */

	public HadoopJobDescriptor(final String jobName, final String jobDescription, final String id, final String status, final String startTime,

			final String lastActivity, final String hadoopId, final String trackingUrl) {

		super();

		this.id = id;

		this.jobName = jobName;

		this.jobDescription = jobDescription;

		this.status = status;

		this.startTime = startTime;

		this.lastActivity = lastActivity;

		this.hadoopId = hadoopId;

		this.trackingUrl = trackingUrl;

	}

	/**

	 * Gets the job name.

	 * 

	 * @return the job name

	 */

	public String getJobName() {

		return jobName;

	}

	/**

	 * Sets the job name.

	 * 

	 * @param jobName

	 *            the new job name

	 */

	public void setJobName(final String jobName) {

		this.jobName = jobName;

	}

	/**

	 * Gets the id.

	 * 

	 * @return the id

	 */

	public String getId() {

		return id;

	}

	/**

	 * Sets the id.

	 * 

	 * @param id

	 *            the new id

	 */

	public void setId(final String id) {

		this.id = id;

	}

	/**

	 * Gets the job description.

	 * 

	 * @return the job description

	 */

	public String getJobDescription() {

		return jobDescription;

	}

	/**

	 * Sets the job description.

	 * 

	 * @param jobDescription

	 *            the new job description

	 */

	public void setJobDescription(final String jobDescription) {

		this.jobDescription = jobDescription;

	}

	/**

	 * Gets the status.

	 * 

	 * @return the status

	 */

	public String getStatus() {

		return status;

	}

	/**

	 * Sets the status.

	 * 

	 * @param status

	 *            the new status

	 */

	public void setStatus(final String status) {

		this.status = status;

	}

	/**

	 * Gets the start time.

	 * 

	 * @return the start time

	 */

	public String getStartTime() {

		return startTime;

	}

	/**

	 * Sets the start time.

	 * 

	 * @param startTime

	 *            the new start time

	 */

	public void setStartTime(final String startTime) {

		this.startTime = startTime;

	}

	/**

	 * Gets the last activity.

	 * 

	 * @return the last activity

	 */

	public String getLastActivity() {

		return lastActivity;

	}

	/**

	 * Sets the last activity.

	 * 

	 * @param lastActivity

	 *            the new last activity

	 */

	public void setLastActivity(final String lastActivity) {

		this.lastActivity = lastActivity;

	}

	/**

	 * Gets the hadoop id.

	 * 

	 * @return the hadoop id

	 */

	public String getHadoopId() {

		return hadoopId;

	}

	/**

	 * Sets the hadoop id.

	 * 

	 * @param hadoopId

	 *            the new hadoop id

	 */

	public void setHadoopId(final String hadoopId) {

		this.hadoopId = hadoopId;

	}

	/**

	 * Gets the tracking url.

	 * 

	 * @return the tracking url

	 */

	public String getTrackingUrl() {

		return trackingUrl;

	}

	/**

	 * Sets the tracking url.

	 * 

	 * @param trackingUrl

	 *            the new tracking url

	 */

	public void setTrackingUrl(final String trackingUrl) {

		this.trackingUrl = trackingUrl;

	}

}

package eu.dnetlib.data.hadoop.rmi;

import java.util.Arrays;

import java.util.List;

import java.util.Set;

import com.google.common.base.Function;

import com.google.common.collect.Iterables;

import com.google.common.collect.Lists;

import com.google.common.collect.Sets;

/**

 * Enum of supported hadoop job types.

 *

 * @author claudio

 */

public enum HadoopJobType {

	/** The mapreduce. */

	mapreduce,

	/** The admin. */

	admin,

	/** The oozie. */

	oozie;

	/**

	 * The Enum AdminJobType.

	 */

	public enum AdminJobType {

		/**

		 * The copytable job.

		 *

		 * <pre>

		 * {@code

		 * bin/hbase org.apache.hadoop.hbase.mapreduce.CopyTable --starttime=1265875194289 --endtime=1265878794289

		 * --peer.adr=server1,server2,server3:2181:/hbase --families=myOldCf:myNewCf,cf2,cf3 TestTable <code>

		 * 

		 * Options:

		 * rs.class     hbase.regionserver.class of the peer cluster,

		 *              specify if different from current cluster

		 * rs.impl      hbase.regionserver.impl of the peer cluster,

		 * startrow     the start row

		 * stoprow      the stop row

		 * starttime    beginning of the time range (unixtime in millis)

		 *              without endtime means from starttime to forever

		 * endtime      end of the time range.  Ignored if no starttime specified.

		 * versions     number of cell versions to copy

		 * new.name     new table's name

		 * peer.adr     Address of the peer cluster given in the format

		 *              hbase.zookeeer.quorum:hbase.zookeeper.client.port:zookeeper.znode.parent

		 * families     comma-separated list of families to copy

		 *              To copy from cf1 to cf2, give sourceCfName:destCfName.

		 *              To keep the same name, just give "cfName"

		 * all.cells    also copy delete markers and deleted cells

		 * 

		 * Args:

		 * tablename    Name of the table to copy

		 * }

		 * </pre>

		 *

		 * */

		copytable;

		public static Set<String> asStringSet() {

			return Sets.newHashSet(asStringList());

		}

		public static List<String> asStringList() {

			return Lists.newArrayList(Iterables.transform(asList(), new Function<AdminJobType, String>() {

				@Override

				public String apply(final AdminJobType type) {

					return type.toString();

				}

			}));

		}

		public static List<AdminJobType> asList() {

			return Arrays.asList(AdminJobType.values());

		}

	}

}

package eu.dnetlib.data.hadoop.rmi;

import eu.dnetlib.common.rmi.RMIException;

/**

 * The Class HadoopServiceException.

 */

public class HadoopServiceException extends RMIException {

	/** The Constant serialVersionUID. */

	private static final long serialVersionUID = 7523999812098059764L;

	/**

	 * Instantiates a new hadoop service exception.

	 * 

	 * @param string

	 *            the string

	 */

	public HadoopServiceException(final String string) {

		super(string);

	}

	/**

	 * Instantiates a new hadoop service exception.

	 * 

	 * @param string

	 *            the string

	 * @param exception

	 *            the exception

	 */

	public HadoopServiceException(final String string, final Throwable exception) {

		super(string, exception);

	}

	/**

	 * Instantiates a new hadoop service exception.

	 * 

	 * @param exception

	 *            the exception

	 */

	public HadoopServiceException(final Throwable exception) {

		super(exception);

	}

}

package eu.dnetlib.data.hadoop.rmi;

import java.util.List;

import java.util.Map;

import java.util.Set;

import javax.jws.WebParam;

import javax.jws.WebService;

import eu.dnetlib.common.rmi.BaseService;

import eu.dnetlib.data.hadoop.rmi.hbase.HBaseRowDescriptor;

/**

 * The Interface HadoopService.

 */

@WebService(targetNamespace = "http://services.dnetlib.eu/")

public interface HadoopService extends BaseService {

	/**

	 * List available jobs.

	 *

	 * @return the list

	 * @throws HadoopServiceException the hadoop service exception

	 */

	List<String> listAvailableJobs() throws HadoopServiceException;

	/**

	 * List jobs.

	 *

	 * @param clusterName the cluster name

	 * @return the list

	 * @throws HadoopServiceException the hadoop service exception

	 */

	List<HadoopJobDescriptor> listJobs(@WebParam(name = "clusterName") String clusterName) throws HadoopServiceException;

	/**

	 * Kill job.

	 *

	 * @param jobId the job id

	 * @return true, if successful

	 * @throws HadoopServiceException the hadoop service exception

	 */

	boolean killJob(@WebParam(name = "id") String jobId) throws HadoopServiceException;

	/**

	 * List hbase tables.

	 *

	 * @param clusterName the cluster name

	 * @return the list

	 * @throws HadoopServiceException the hadoop service exception

	 */

	List<String> listHbaseTables(@WebParam(name = "clusterName") String clusterName) throws HadoopServiceException;

	/**

	 * Ensure hbase table.

	 *

	 * @param clusterName the cluster name

	 * @param tableName   the table name

	 * @param columns     the columns

	 * @return true, if successful

	 * @throws HadoopServiceException the hadoop service exception

	 */

	boolean ensureHbaseTable(@WebParam(name = "clusterName") String clusterName,

			@WebParam(name = "tableName") String tableName,

			@WebParam(name = "columns") Set<String> columns) throws HadoopServiceException;

	/**

	 * Creates the hbase table.

	 *

	 * @param clusterName the cluster name

	 * @param tableName   the table name

	 * @param columns     the columns

	 * @return true, if successful

	 * @throws HadoopServiceException the hadoop service exception

	 */

	boolean createHbaseTable(@WebParam(name = "clusterName") String clusterName,

			@WebParam(name = "tableName") String tableName,

			@WebParam(name = "columns") Set<String> columns) throws HadoopServiceException;

	/**

	 * Creates the hbase table.

	 *

	 * @param clusterName the cluster name

	 * @param tableName   the table name

	 * @param tableConfiguration     the table configuration: columns and region splits

	 * @return true, if successful

	 * @throws HadoopServiceException the hadoop service exception

	 */

	boolean createConfiguredHbaseTable(@WebParam(name = "clusterName") String clusterName,

			@WebParam(name = "tableName") String tableName,

			@WebParam(name = "tableConfiguration") String tableConfiguration) throws HadoopServiceException;

	/**

	 * Truncate hbase table.

	 *

	 * @param clusterName the cluster name

	 * @param tableName   the table name

	 * @return true, if successful

	 * @throws HadoopServiceException the hadoop service exception

	 */

	boolean truncateHbaseTable(@WebParam(name = "clusterName") String clusterName, @WebParam(name = "tableName") String tableName)

			throws HadoopServiceException;

	/**

	 * Drop hbase table.

	 *

	 * @param clusterName the cluster name

	 * @param tableName   the table name

	 * @return true, if successful

	 * @throws HadoopServiceException the hadoop service exception

	 */

	boolean dropHbaseTable(@WebParam(name = "clusterName") String clusterName, @WebParam(name = "tableName") String tableName) throws HadoopServiceException;

	/**

	 * Exist hbase table.

	 *

	 * @param clusterName the cluster name

	 * @param tableName   the table name

	 * @return true, if successful

	 * @throws HadoopServiceException the hadoop service exception

	 */

	boolean existHbaseTable(@WebParam(name = "clusterName") String clusterName, @WebParam(name = "tableName") String tableName) throws HadoopServiceException;

	/**

	 * Describe hbase table.

	 *

	 * @param clusterName the cluster name

	 * @param tableName   the table name

	 * @return the list of columns defined for that table.

	 * @throws HadoopServiceException the hadoop service exception

	 */

	List<String> describeHbaseTable(@WebParam(name = "clusterName") String clusterName, @WebParam(name = "tableName") String tableName)

			throws HadoopServiceException;

	/**

	 * Gets the cluster configuration.

	 *

	 * @param clusterName the cluster name

	 * @return the cluster configuration

	 * @throws HadoopServiceException the hadoop service exception

	 */

	Map<String, String> getClusterConfiguration(@WebParam(name = "clusterName") String clusterName) throws HadoopServiceException;

	/**

	 * Deletes a path on HDFS

	 *

	 * @param clusterName the cluster name

	 * @param path        the path to be deleted

	 * @return true in case of success

	 * @throws HadoopServiceException

	 */

	boolean deleteHdfsPath(@WebParam(name = "clusterName") String clusterName, @WebParam(name = "path") String path)

			throws HadoopServiceException;

	/**

	 * Check if path on HDFS exists

	 *

	 * @param clusterName the cluster name

	 * @param path        the path to be deleted

	 * @return true in case the path exists

	 * @throws HadoopServiceException

	 */

	boolean existHdfsPath(@WebParam(name = "clusterName") String clusterName, @WebParam(name = "path") String path)

			throws HadoopServiceException;

	/**

	 * Creates a directory on HDFS, eventually deleteing its content.

	 *

	 * @param clusterName the cluster name

	 * @param path        the path to be created

	 * @param force       force delete before create

	 * @return true in case of success

	 * @throws HadoopServiceException

	 */

	boolean createHdfsDirectory(@WebParam(name = "clusterName") String clusterName,

			@WebParam(name = "path") String path,

			@WebParam(name = "force") boolean force)

			throws HadoopServiceException;

	/**

	 * List the configured cluster names.

	 *

	 * @return the list of configured cluster names.

	 * @throws HadoopServiceException shouldn't happen

	 */

	List<String> listClusters() throws HadoopServiceException;