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package eu.dnetlib.data.claimsDemo;
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import eu.dnetlib.data.claims.migration.entity.*;
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import java.lang.reflect.Array;
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import java.sql.Connection;
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import java.text.SimpleDateFormat;
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import java.util.ArrayList;
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import java.util.Date;
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import java.util.List;
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import org.apache.log4j.Logger;
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public class QueryGenerator {
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boolean updateOnInsert;
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String migrationTable ="claims"; //a table or a view containing old schema claims - But only user claims, not those where agent='inference'
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private static final Logger logger = Logger.getLogger(QueryGenerator.class);
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public boolean isUpdateOnInsert() {
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return updateOnInsert;
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}
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public void setUpdateOnInsert(boolean updateOnInsert) {
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this.updateOnInsert = updateOnInsert;
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}
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/**
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** Insert Queries **
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**/
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public String generateInsertQueryForClaimsOrphanIds(String id){
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return "INSERT INTO claims_orphan_ids values (" + id + ");";
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}
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private String generateInsertResultQuery(String openaire_id, String result_type, String title, String collected_from , String external_url, String doi, String orcidworkid, String access_rights , String embargo_end_date, String best_license, String record_path, String record_format, ArrayList<Object> params) {
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if(title!=null&&title.contains("'")){
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title=title.replace("'","''");
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}
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String fields="openaire_id";
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if(result_type!=null){
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fields+=", result_type";
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}
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if(title!=null){
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fields+=", title";
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}
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if(collected_from!=null){
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fields+=", collected_from";
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}
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if(external_url!=null){
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fields+=", external_url";
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}
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if(doi!=null){
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fields+=", doi";
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}
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if(orcidworkid!=null){
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fields+=", orcidworkid";
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}
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if(access_rights!=null){
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fields+=", access_rights";
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}
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if(embargo_end_date!=null){
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fields+=", embargo_end_date";
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}
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if(best_license!=null){
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fields+=", best_license";
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}
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if(record_path!=null){
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fields+=", record_path";
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}
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if(record_format!=null){
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fields+=", record_format";
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}
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String values="?";
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params.add(openaire_id);
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if(result_type!=null){
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values+=",?";
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params.add(result_type);
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}
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if(title!=null){
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values+=",?";
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params.add(title);
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}
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if(collected_from!=null){
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values+=",?";
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params.add(collected_from);
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}
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if(external_url!=null){
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values+=",?";
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params.add(external_url);
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}
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if(doi!=null){
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values+=",?";
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params.add(doi);
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}
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if(orcidworkid!=null){
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values+=",?";
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params.add(orcidworkid);
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}
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if(access_rights!=null){
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values+=",?";
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params.add(access_rights);
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}
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if(embargo_end_date!=null){
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values+=",?::date";
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params.add(embargo_end_date);
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}
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if(best_license!=null){
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values+=",?";
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params.add(best_license);
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}
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if(record_path!=null){
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values+=",?";
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params.add(record_path);
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}
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if(record_format!=null){
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values+=",?";
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params.add(record_format);
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}
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params.add(openaire_id);
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return "INSERT INTO result("+fields+")\n" +
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" Select "+values+
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" where not exists (select openaire_id from result where openaire_id=?)\n" +
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" RETURNING openaire_id";
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//TODO update on insert when exists
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}
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public String generateInsertProjectQuery(String openaire_id, String name, String acronym, String funder_id, String funder_name, String funder_acronym, List<String> contactEmails, ArrayList<Object> params) {
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if(name!=null) {
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name = name.replace("'", "''");
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}
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String fields="openaire_id";
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if(name!=null){
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fields+=",name";
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}
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if(acronym!=null){
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fields+=",acronym";
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}
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if(funder_id!=null){
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fields+=",funder_id";
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}
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if(funder_name!=null){
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fields+=",funder_name";
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}
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if(funder_acronym!=null){
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fields+=",funder_acronym";
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}
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if(contactEmails != null && contactEmails.size() > 0){
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fields+=",contact_person";
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}
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String values="?";
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params.add(openaire_id);
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if(name!=null){
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values+=",?";
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params.add(name);
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}
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if(acronym!=null){
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values+=",?";
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params.add(acronym);
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}
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if(funder_id!=null){
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values+=",?";
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params.add(funder_id);
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}
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if(funder_name!=null){
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values+=",?";
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params.add(funder_name);
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}
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if(funder_acronym!=null){
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values+=",?";
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params.add(funder_acronym);
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}
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if(contactEmails != null && contactEmails.size() > 0){
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values+=",string_to_array(?, ',')";
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//String email_json = "{";
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String email_json = "";
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for(int i = 0; i< contactEmails.size(); i++){
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email_json+=contactEmails.get(i)+((i < contactEmails.size() -1 )?",":"");
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//params.add(contactEmails.get(i));
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}
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//email_json+="";
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params.add(email_json);
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}
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params.add(openaire_id);
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return "INSERT INTO project("+fields+")\n" +
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" Select "+values +
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" where not exists (select openaire_id from project where openaire_id=?)\n" +
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" RETURNING openaire_id";
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//TODO update on insert when exists
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}
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private String generateInsertContextQuery(String openaire_id, String name, ArrayList<Object> params) {
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String fields="openaire_id";
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if(name!=null){
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fields+=",name";
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}
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String values="?";
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params.add(openaire_id);
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if(name!=null){
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values+=",?";
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params.add(name);
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}
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params.add(openaire_id);
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return "INSERT INTO context("+fields+")\n" +
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" Select "+values+
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" where not exists (select openaire_id from context where openaire_id=?)\n" +
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" RETURNING openaire_id";
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//TODO update on insert when exists
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}
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private String generateInsertClaimQuery(Date date, String claimedBy, String source_type, String target_type , String source_id , String target_id, String semantics, ArrayList<Object> params) {
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SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
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String dateStr=null;
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dateStr=(format.format(date));
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String fields="claim_date,claimedBy,source_type,target_type, source_id, target_id";
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if(semantics!=null){
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fields+=",semantics";
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}
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String values="?::timestamp,?,?,?,?,?";
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params.add(dateStr);
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params.add(claimedBy);
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params.add(source_type);
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params.add(target_type);
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params.add(source_id);
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params.add(target_id);
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if(semantics!=null){
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values+=",?";
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params.add(semantics);
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}
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return " INSERT INTO claim( "+fields+")\n" +
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" VALUES ( "+values+")\n" +
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" RETURNING id, source_id, target_id\n";
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}
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private String generateInsertFullClaimQuery(String targetQuery, String sourceQuery, Claim claim, ArrayList<Object> params) {
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if (claim ==null || targetQuery ==null || sourceQuery == null){
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return null;
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}
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String sourceTableName= getSourceTableName(claim.getSourceType());
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String targetTableName= getTargetTableName(claim.getTargetType());
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if (sourceTableName ==null || targetTableName ==null ){
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return null;
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}
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return " WITH target AS (\n" +
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targetQuery+
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" ),\n source AS (\n" +
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sourceQuery+
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" ),\n myclaim AS (\n" +
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generateInsertClaimQuery(claim.getDate(), claim.getUserMail(), claim.getSourceType(), claim.getTargetType(), claim.getSource().getOpenaireId(), claim.getTarget().getOpenaireId(),this.createSemanticsType(claim.getSourceType(),claim.getTargetType()), params) +
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" ),\n ins4 AS (\n" +
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" INSERT INTO "+sourceTableName+" (claim_id, openaire_id)\n" +
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" SELECT id, source_id\n" +
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" FROM myclaim) \n"+
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" INSERT INTO "+targetTableName+"(claim_id, openaire_id)\n" +
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" SELECT id, target_id\n" +
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" FROM myclaim "+
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" RETURNING claim_id;";
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}
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public String generateInsertFullClaimQuery( Claim claim, ArrayList<Object> params) {
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String targetQuery =null;
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String sourceQuery=null;
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targetQuery=generateInsertEntityQuery(claim.getTarget(),claim.getTargetType(), params);
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sourceQuery=generateInsertEntityQuery(claim.getSource(),claim.getSourceType(), params);
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return generateInsertFullClaimQuery(targetQuery,sourceQuery,claim, params);
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}
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private String generateInsertEntityQuery(OpenaireEntity openaireEntity, String type, ArrayList<Object> params){
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String query=null;
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if(type==null){
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return null;
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}
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if(type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.SOFTWARE)||type.equals(ClaimUtils.OTHER)){
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Result result=(Result)openaireEntity;
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query=generateInsertResultQuery(result.getOpenaireId(),result.getResultType(),result.getTitle(),result.getCollectedFrom(),result.getExternalUrl(),result.getDoi(), result.getOrcidworkid(), result.getAccessRights(),result.getEmbargoEndDate(),result.getBestLicense(),result.getRecordPath(), result.getRecordFormat(), params);
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}else if(type.equals(ClaimUtils.PROJECT)){
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Project project=(Project)openaireEntity;
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query=generateInsertProjectQuery(project.getOpenaireId(),project.getName(),project.getAcronym(),project.getFunderId(),project.getFunderName(),project.getFunderShortName(),project.getContactEmails(), params);
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}else if(type.equals(ClaimUtils.CONTEXT)){
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Context context= (Context)openaireEntity;
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query=generateInsertContextQuery(context.getOpenaireId(),context.getTitle(), params);
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}
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return query;
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}
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private String getSourceTableName(String type){
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String tablename="has_source_";
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if(type==null){
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return null;
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}else{
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tablename+=getTypeForTable(type);
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}
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return tablename;
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}
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private String getTargetTableName(String type){
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String tablename="has_target_";
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if(type==null){
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return null;
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}else{
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tablename+=getTypeForTable(type);
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}
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return tablename;
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}
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public String generateInsertClaimResultQuery(String targetQuery, String sourceQuery, Claim claim, ArrayList<Object> params) {
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301
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return " WITH ins1 AS (\n" +
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targetQuery+
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" ),\n ins2 AS (\n" +
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sourceQuery+
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" ),\n ins3 AS (\n" +
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generateInsertClaimQuery(claim.getDate(), claim.getUserMail(), claim.getSourceType(), claim.getTargetType(), claim.getSource().getOpenaireId(), claim.getTarget().getOpenaireId(),this.createSemanticsType(claim.getSourceType(),claim.getTargetType()), params) +
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" ),\n ins4 AS (\n" +
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" INSERT INTO has_source_result (claim_id, openaire_id)\n" +
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" SELECT id, source_id\n" +
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311
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" FROM ins3) \n"+
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312
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" INSERT INTO has_target_result(claim_id, openaire_id)\n" +
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" SELECT id, target_id\n" +
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" FROM ins3;";
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315
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}
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316
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317
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/**
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318
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*
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319
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* @param sourceType
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320
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* @param targetType
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321
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* @return "resultResult_"+targetType+sourceType+"_isRelatedTo"
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322
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*/
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323
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private String createSemanticsType(String sourceType,String targetType){
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324
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String semantics=null;
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325
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// if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.DATASET))){
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326
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// semantics="resultResult_relationship_isRelatedTo";
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327
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// }
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328
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// else if(targetType.equals(ClaimUtils.DATASET)&&sourceType.equals(ClaimUtils.PUBLICATION)){
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// semantics="resultResult_relationship_isRelatedTo";
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// }
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331
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// if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.SOFTWARE))){
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// semantics="resultResult_relationship_isRelatedTo";
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// }
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// else if(targetType.equals(ClaimUtils.SOFTWARE)&&sourceType.equals(ClaimUtils.PUBLICATION)){
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335
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// semantics="resultResult_relationship_isRelatedTo";
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// }
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337
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// if((targetType.equals(ClaimUtils.DATASET))&&(sourceType.equals(ClaimUtils.SOFTWARE))){
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// semantics="resultResult_relationship_isRelatedTo";
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// }
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340
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// else if(targetType.equals(ClaimUtils.SOFTWARE)&&sourceType.equals(ClaimUtils.DATASET)){
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341
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// semantics="resultResult_relationship_isRelatedTo";
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342
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// }
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343
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// else if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.PUBLICATION))){
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344
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// semantics="resultResult_relationship_isRelatedTo";
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345
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// }
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346
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// else if(targetType.equals(ClaimUtils.DATASET)&&sourceType.equals(ClaimUtils.DATASET)){
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347
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// semantics="resultResult_relationship_isRelatedTo";
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348
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// }
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349
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// else if(targetType.equals(ClaimUtils.SOFTWARE)&&sourceType.equals(ClaimUtils.SOFTWARE)){
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350
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// semantics="resultResult_supplement_isSupplementTo";
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// }
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352
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//add above more specific semantics for pub,data and software
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353
|
if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET)||targetType.equals(ClaimUtils.SOFTWARE)||targetType.equals(ClaimUtils.OTHER))&&(sourceType.equals(ClaimUtils.PUBLICATION)||sourceType.equals(ClaimUtils.DATASET)||sourceType.equals(ClaimUtils.SOFTWARE)||sourceType.equals(ClaimUtils.OTHER))){
|
|
354
|
semantics="resultResult_relationship_isRelatedTo";
|
|
355
|
}
|
|
356
|
else if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET)||targetType.equals(ClaimUtils.SOFTWARE)||targetType.equals(ClaimUtils.OTHER))&&(sourceType.equals(ClaimUtils.PROJECT))){
|
|
357
|
semantics= "resultProject_outcome_produces"; //"resultProject_outcome_isProducedBy";
|
|
358
|
}
|
|
359
|
else if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET)||targetType.equals(ClaimUtils.SOFTWARE)||targetType.equals(ClaimUtils.OTHER))&&(sourceType.equals(ClaimUtils.CONTEXT))){
|
|
360
|
semantics= "isRelevantTo";
|
|
361
|
}
|
|
362
|
|
|
363
|
return semantics;
|
|
364
|
}
|
|
365
|
/* public String generateInsertClaimResultQuery(Result targetResult, Result sourceResult, Claim claim) {
|
|
366
|
|
|
367
|
return generateInsertClaimResultQuery(generateInsertResultQuery(targetResult.getOpenaireId(), targetResult.getResultType(), targetResult.getTitle(), targetResult.getCollectedFrom(), targetResult.getExternalUrl(), targetResult.getDOI(),targetResult.getOrcidworkid(), targetResult.getAccessRights(), targetResult.getEmbargoEndDate(), targetResult.getBestLicense(), targetResult.getRecordPath(), targetResult.getRecordFormat()),
|
|
368
|
generateInsertResultQuery(sourceResult.getOpenaireId(), sourceResult.getResultType(), sourceResult.getTitle(), sourceResult.getCollectedFrom(), sourceResult.getExternalUrl(), sourceResult.getDOI(), sourceResult.getOrcidworkid(), sourceResult.getAccessRights(), targetResult.getEmbargoEndDate(), sourceResult.getBestLicense(), sourceResult.getRecordPath(),sourceResult.getRecordFormat()),claim);
|
|
369
|
}
|
|
370
|
public String generateInsertClaimProjectQuery(String targetQuery, String projectQuery, Claim claim) {
|
|
371
|
|
|
372
|
return " WITH ins1 AS (\n" +
|
|
373
|
targetQuery+
|
|
374
|
" ),\n ins2 AS (\n" +
|
|
375
|
projectQuery+
|
|
376
|
" ),\n ins3 AS (\n" +
|
|
377
|
generateInsertClaimQuery(claim.getDate(), claim.getUserMail(), claim.getSourceType(), claim.getTargetType(), claim.getSource().getOpenaireId(), claim.getTarget().getOpenaireId(),"resultProject_outcome_isProducedBy") +
|
|
378
|
" ),\n ins4 AS (\n" +
|
|
379
|
" INSERT INTO has_source_project (claim_id, openaire_id)\n" +
|
|
380
|
" SELECT id, source_id\n" +
|
|
381
|
" FROM ins3) \n"+
|
|
382
|
" INSERT INTO has_target_result(claim_id, openaire_id)\n" +
|
|
383
|
" SELECT id, target_id\n" +
|
|
384
|
" FROM ins3;";
|
|
385
|
}
|
|
386
|
public String generateInsertClaimProjectQuery(Result targetResult, Project project, Claim claim) {
|
|
387
|
|
|
388
|
return
|
|
389
|
generateInsertClaimProjectQuery(generateInsertResultQuery(targetResult.getOpenaireId(), targetResult.getResultType(), targetResult.getTitle(), targetResult.getCollectedFrom(), targetResult.getExternalUrl(), targetResult.getDOI(), targetResult.getOrcidworkid(), targetResult.getAccessRights(), targetResult.getEmbargoEndDate(), targetResult.getBestLicense(), targetResult.getRecordPath(),targetResult.getRecordFormat()),
|
|
390
|
generateInsertProjectQuery(project.getOpenaireId(), project.getName(), project.getAcronym(), project.getFunderId(), project.getFunderName(), project.getFunderShortName()), claim);
|
|
391
|
}
|
|
392
|
public String generateInsertClaimContextQuery(Result targetResult, Context context, Claim claim) {
|
|
393
|
|
|
394
|
return generateInsertClaimContextQuery
|
|
395
|
(generateInsertResultQuery(targetResult.getOpenaireId(), targetResult.getResultType(), targetResult.getTitle(), targetResult.getCollectedFrom(), targetResult.getExternalUrl(), targetResult.getDOI(), targetResult.getOrcidworkid(), targetResult.getAccessRights(), targetResult.getEmbargoEndDate(), targetResult.getBestLicense(), targetResult.getRecordPath(),targetResult.getRecordFormat())
|
|
396
|
,generateInsertContextQuery(context.getOpenaireId(), context.getTitle()),claim);
|
|
397
|
}
|
|
398
|
public String generateInsertClaimContextQuery(String targetQuery,String sourceQuery, Claim claim) {
|
|
399
|
|
|
400
|
return " WITH ins1 AS (\n" +targetQuery+
|
|
401
|
" ),\n ins2 AS (\n" +
|
|
402
|
sourceQuery+
|
|
403
|
" ),\n ins3 AS (\n" +
|
|
404
|
generateInsertClaimQuery(claim.getDate(), claim.getUserMail(), claim.getSourceType(), claim.getTargetType(), claim.getSource().getOpenaireId(), claim.getTarget().getOpenaireId(),"") +
|
|
405
|
" ), ins4 AS (\n" +
|
|
406
|
" INSERT INTO has_source_context(claim_id, openaire_id)\n" +
|
|
407
|
" SELECT id, source_id\n" +
|
|
408
|
" FROM ins3) \n"+
|
|
409
|
" INSERT INTO has_target_result(claim_id, openaire_id)\n" +
|
|
410
|
" SELECT id, target_id\n" +
|
|
411
|
" FROM ins3;";
|
|
412
|
}
|
|
413
|
*/
|
|
414
|
/**
|
|
415
|
** Delete Tables Queries **
|
|
416
|
**/
|
|
417
|
|
|
418
|
public String generateDeleteClaimTablesQuery() {
|
|
419
|
return "drop table if exists has_source_context;\n" +
|
|
420
|
"drop table if exists has_source_project;\n" +
|
|
421
|
"drop table if exists has_source_result;\n" +
|
|
422
|
"drop table if exists has_target_project;\n" +
|
|
423
|
"drop table if exists has_target_result;\n" +
|
|
424
|
"drop table if exists claim;\n" +
|
|
425
|
"drop table if exists project;\n" +
|
|
426
|
"drop table if exists result;\n" +
|
|
427
|
"drop table if exists context;\n" +
|
|
428
|
"drop table if exists claims_orphan_ids;\n" +
|
|
429
|
"\n ";
|
|
430
|
|
|
431
|
}
|
|
432
|
|
|
433
|
/**
|
|
434
|
** Create Tables Queries **
|
|
435
|
**/
|
|
436
|
|
|
437
|
public String generateCreateClaimTablesQuery() {
|
|
438
|
return "CREATE TABLE project (\n" +
|
|
439
|
" openaire_id varchar(60) primary key NOT NULL,\n" +
|
|
440
|
" name text NOT NULL,\n" +
|
|
441
|
" acronym text,\n" +
|
|
442
|
" funder_id varchar(60) NOT NULL,\n" +
|
|
443
|
" funder_name text NOT NULL,\n" +
|
|
444
|
" funder_acronym text NOT NULL,\n" +
|
|
445
|
" notify boolean DEFAULT TRUE,\n" +
|
|
446
|
" contact_person text[],\n" +
|
|
447
|
" token varchar(60)\n" +
|
|
448
|
");\n" +
|
|
449
|
"\n" +
|
|
450
|
"CREATE TABLE result (\n" +
|
|
451
|
" id serial NOT NULL,\n" +
|
|
452
|
" openaire_id varchar(60) primary key NOT NULL,\n" +
|
|
453
|
"\t\tresult_type varchar(30) NOT NULL,\n" +
|
|
454
|
"\t\tdoi text,\n" +
|
|
455
|
"\t\torcidworkid text,\n" +
|
|
456
|
"\t\ttitle text,\n" +
|
|
457
|
"\t\taccess_rights varchar(30),\n" +
|
|
458
|
"\t\tembargo_end_date date,\n" +
|
|
459
|
"\t\tbest_license varchar(30),\t\t\n" +
|
|
460
|
"\t\texternal_url text,\n" +
|
|
461
|
"\t\tcollected_from varchar(60) ,\n" +
|
|
462
|
"\t\trecord_path text , \n" +
|
|
463
|
"\t\trecord_format varchar(10)\n" +
|
|
464
|
");\n" +
|
|
465
|
"\n" +
|
|
466
|
"CREATE TABLE context (\n" +
|
|
467
|
" openaire_id varchar(60) primary key,\n" +
|
|
468
|
" name text\n" +
|
|
469
|
");\n" +
|
|
470
|
"CREATE TABLE claim (\n" +
|
|
471
|
" id serial primary key NOT NULL,\n" +
|
|
472
|
" claim_date timestamp without time zone NOT NULL,\n" +
|
|
473
|
" claimedBy text NOT NULL,\n" +
|
|
474
|
" source_type varchar(30) NOT NULL,\n" +
|
|
475
|
" target_type varchar(30) NOT NULL,\n" +
|
|
476
|
" source_id varchar(60) NOT NULL,\n" +
|
|
477
|
" target_id varchar(60) references result(openaire_id) NOT NULL,\n" +
|
|
478
|
" curation_date timestamp without time zone,\n" +
|
|
479
|
" curated_by text,\n" +
|
|
480
|
" approved boolean DEFAULT TRUE,\n" +
|
|
481
|
" claim_status varchar(30),\n" +
|
|
482
|
" semantics varchar(60) NOT NULL\n" +
|
|
483
|
");\n" +
|
|
484
|
"\n" +
|
|
485
|
"CREATE TABLE has_source_context(\n" +
|
|
486
|
"\tclaim_id int references claim(id) NOT NULL,\n" +
|
|
487
|
"\topenaire_id varchar(60) references context(openaire_id) NOT NULL\n" +
|
|
488
|
");\n" +
|
|
489
|
"CREATE TABLE has_source_project(\n" +
|
|
490
|
"\tclaim_id int references claim(id) NOT NULL,\n" +
|
|
491
|
"\topenaire_id varchar(60) references project(openaire_id) NOT NULL\n" +
|
|
492
|
");\n" +
|
|
493
|
"CREATE TABLE has_source_result(\n" +
|
|
494
|
"\tclaim_id int references claim(id) NOT NULL,\n" +
|
|
495
|
"\topenaire_id varchar(60) references result(openaire_id) NOT NULL\n" +
|
|
496
|
");\n"+
|
|
497
|
"CREATE TABLE has_target_project(\n" +
|
|
498
|
"\tclaim_id int references claim(id) NOT NULL,\n" +
|
|
499
|
"\topenaire_id varchar(60) references project(openaire_id) NOT NULL\n" +
|
|
500
|
");\n" +
|
|
501
|
"CREATE TABLE has_target_result(\n" +
|
|
502
|
"\tclaim_id int references claim(id) NOT NULL,\n" +
|
|
503
|
"\topenaire_id varchar(60) references result(openaire_id) NOT NULL\n" +
|
|
504
|
");\n"+
|
|
505
|
"CREATE TABLE claims_orphan_ids (\n" +
|
|
506
|
" id integer "+
|
|
507
|
");\n"
|
|
508
|
|
|
509
|
;
|
|
510
|
|
|
511
|
}
|
|
512
|
|
|
513
|
/**
|
|
514
|
** Select Queries *Old* Database **
|
|
515
|
**/
|
|
516
|
|
|
517
|
|
|
518
|
public String generateSelectDMFByIdQuery(String id) {
|
|
519
|
return " Select * from "+this.migrationTable+" where type='dmf2actions' and xml NOT ILIKE '%<oaf:concept%' and resultid='"+id+"' order by date desc limit 1";
|
|
520
|
}
|
|
521
|
|
|
522
|
public String generateSelectConceptDMFClaimsQuery(Integer limit) {
|
|
523
|
return " Select * from "+this.migrationTable+" where ( type='dmf2actions' or type='updates2actions' ) and xml LIKE '%<oaf:concept%' "+(limit>0?" limit "+limit:"");
|
|
524
|
}
|
|
525
|
/**
|
|
526
|
*
|
|
527
|
* @param limit : for limit > 0 the query adds limit clause, for limit < 0 query skips limit clause
|
|
528
|
* @return
|
|
529
|
*/
|
|
530
|
public String generateSelectRelationEnrichedWithDMFClaimsQuery(Integer limit) {
|
|
531
|
return " select rel.*, dmf.dmf from (Select * from "+this.migrationTable+" where type='rels2actions' order by id) as rel left outer join \n" +
|
|
532
|
"(Select DISTINCT ON (resultid) resultid,date, xml as dmf from "+this.migrationTable+" where type='dmf2actions' and xml NOT ILIKE '%<oaf:concept%' order by resultid,date desc , xml) as dmf on rel.resultid=dmf.resultid "+
|
|
533
|
" order by rel.id "
|
|
534
|
+(limit>0?" limit "+limit:"");
|
|
535
|
|
|
536
|
}
|
|
537
|
|
|
538
|
/**
|
|
539
|
*
|
|
540
|
* @param limit : for limit > 0 the query adds limit clause, for limit < 0 query skips limit clause
|
|
541
|
* @return
|
|
542
|
*/
|
|
543
|
public String generateSelectConceptClaimsEnrichedWithDMFClaimsQuery(Integer limit) {
|
|
544
|
return " select rel.*, dmf.dmf from (Select * from "+this.migrationTable+" where ( type='dmf2actions' or type='updates2actions' ) and xml LIKE '%<oaf:concept%' order by id) as rel left outer join \n" +
|
|
545
|
"(Select DISTINCT ON (resultid) resultid,date, xml as dmf from "+this.migrationTable+" where type='dmf2actions' and xml NOT ILIKE '%<oaf:concept%' order by resultid,date desc , xml) as dmf on rel.resultid=dmf.resultid"
|
|
546
|
+" order by rel.id "
|
|
547
|
+(limit>0?" limit "+limit:"");
|
|
548
|
|
|
549
|
}
|
|
550
|
|
|
551
|
public String generateSelectConceptClaimByIDEnrichedWithDMFClaimsQuery(Integer limit, String claimID) {
|
|
552
|
return " select rel.*, dmf.dmf from (Select * from "+this.migrationTable+" where id='"+claimID+"' and ( type='dmf2actions' or type='updates2actions' ) and xml LIKE '%<oaf:concept%') as rel left outer join \n" +
|
|
553
|
"(Select DISTINCT ON (resultid) resultid,date, xml as dmf from "+this.migrationTable+" where type='dmf2actions' and xml NOT ILIKE '%<oaf:concept%' order by resultid,date desc , xml) as dmf on rel.resultid=dmf.resultid"
|
|
554
|
+(limit>0?" limit "+limit:"");
|
|
555
|
}
|
|
556
|
public String generateSelectRelationClaimByIDEnrichedWithDMFClaimsQuery(Integer limit, String claimID) {
|
|
557
|
return " select rel.*, dmf.dmf from (Select * from "+this.migrationTable+" where id='"+claimID+"' and type='rels2actions' ) as rel left outer join \n" +
|
|
558
|
"(Select DISTINCT ON (resultid) resultid,date, xml as dmf from "+this.migrationTable+" where type='dmf2actions' and xml NOT ILIKE '%<oaf:concept%' order by resultid,date desc , xml) as dmf on rel.resultid=dmf.resultid"
|
|
559
|
+(limit>0?" limit "+limit:"");
|
|
560
|
}
|
|
561
|
|
|
562
|
|
|
563
|
public String generateSelectConceptClaimByIdQuery(String id) {
|
|
564
|
return " Select * from "+this.migrationTable+" where ( type='dmf2actions' or type='updates2actions' ) and xml LIKE '%<oaf:concept%' and id='"+id+"'";
|
|
565
|
|
|
566
|
}
|
|
567
|
public String generateSelectRelationClaimByIdQuery(String id) {
|
|
568
|
return " Select * from "+this.migrationTable+" where type='rels2actions' and id='"+id+"'";
|
|
569
|
|
|
570
|
}
|
|
571
|
|
|
572
|
|
|
573
|
/**
|
|
574
|
** Select - Fetch Queries *New* Database **
|
|
575
|
**/
|
|
576
|
|
|
577
|
|
|
578
|
private String addPagingClause(Integer limit, Integer offset) {
|
|
579
|
if(limit==null && offset==null){
|
|
580
|
return "";
|
|
581
|
}
|
|
582
|
else if((limit==null || offset==null || offset <0 || limit<=0)){
|
|
583
|
limit=10;
|
|
584
|
offset=0;
|
|
585
|
}
|
|
586
|
return " limit " + limit + " offset " + offset;
|
|
587
|
|
|
588
|
}
|
|
589
|
private String addOrderByClause( String orderBy, boolean desc) {
|
|
590
|
if(orderBy==null){
|
|
591
|
return null;
|
|
592
|
}else if(orderBy.equals("date")){
|
|
593
|
return " order by claim.claim_date "+((desc)?"desc":"asc");
|
|
594
|
}else if(orderBy.equals("user")){
|
|
595
|
return " order by claim.claimedBy "+((desc)?"desc":"asc");
|
|
596
|
|
|
597
|
}else if(orderBy.equals("source")){
|
|
598
|
return " order by claim.source_title "+((desc)?"desc":"asc");
|
|
599
|
|
|
600
|
}else if(orderBy.equals("target")){
|
|
601
|
return " order by claim.target_title "+((desc)?"desc":"asc");
|
|
602
|
|
|
603
|
}else{
|
|
604
|
return " order by claim.claim_date desc";
|
|
605
|
}
|
|
606
|
|
|
607
|
}
|
|
608
|
|
|
609
|
private String addFilterByType( List<String> types, ArrayList<Object> params) {
|
|
610
|
logger.debug(types);
|
|
611
|
if(types == null || types.isEmpty() || (types.size() == 1 && types.get(0).isEmpty())){
|
|
612
|
return null;
|
|
613
|
}else if (types.contains(ClaimUtils.PUBLICATION) && types.contains(ClaimUtils.DATASET) && types.contains(ClaimUtils.SOFTWARE) && types.contains(ClaimUtils.PROJECT) && types.contains(ClaimUtils.CONTEXT) && types.contains(ClaimUtils.OTHER) ){
|
|
614
|
//it's all types - no need to filter
|
|
615
|
return null;
|
|
616
|
}
|
|
617
|
else{
|
|
618
|
String filter = "";
|
|
619
|
for(String type: types){
|
|
620
|
filter+=((filter.length()>0)?" or ":"")+" claim.source_type = ? or claim.target_type = ?";
|
|
621
|
params.add(type);
|
|
622
|
params.add(type);
|
|
623
|
}
|
|
624
|
return filter;
|
|
625
|
}
|
|
626
|
}
|
|
627
|
|
|
628
|
public String generateCountByUser(String user ,String keyword,List<String> types, ArrayList<Object> params) {
|
|
629
|
if((keyword == null || keyword.equals(""))&&types.isEmpty()){
|
|
630
|
params.add(user);
|
|
631
|
return " select count(*) from claim where "+ " claim.claimedBy=?";
|
|
632
|
}
|
|
633
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaimsByUser(user, null,null,keyword,null,false,types, params)+")as claim )";
|
|
634
|
}
|
|
635
|
public String generateCountByDate(String dateFrom, String dateTo ,String keyword,List<String> types, ArrayList<Object> params) {
|
|
636
|
if((keyword == null || keyword.equals(""))&&types.isEmpty()){
|
|
637
|
params.add(dateFrom);
|
|
638
|
params.add(dateTo);
|
|
639
|
return " select count(*) from claim where "+ " claim.claim_date >= ?::timestamp and claim.claim_date <= ?::timestamp ";
|
|
640
|
}
|
|
641
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaimsByDate(dateFrom,dateTo, null,null,keyword,null,false, types, params)+")as claim )";
|
|
642
|
}
|
|
643
|
public String generateCountByProject(String projectId ,String keyword, List<String> types, ArrayList<Object> params) {
|
|
644
|
if((keyword == null || keyword.equals(""))&&types.isEmpty()){
|
|
645
|
params.add(projectId);
|
|
646
|
return " select count(*) from claim where "+"claim.source_id =?";
|
|
647
|
}
|
|
648
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaimsByProject(projectId, null,null,keyword,null,false, types, params)+")as claim )";
|
|
649
|
}
|
|
650
|
/*
|
|
651
|
public String generateCountByProjectToken(String projectToken,String email ,String keyword, List<String> types ) {
|
|
652
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaimsByProjectToken(projectToken, email,null,null,keyword,null,false, types)+")as claim )";
|
|
653
|
}
|
|
654
|
*/
|
|
655
|
public String generateCountByFunder(String funderId ,String keyword, List<String> types, ArrayList<Object> params) {
|
|
656
|
if((keyword == null || keyword.equals(""))&&types.isEmpty()){
|
|
657
|
params.add(funderId);
|
|
658
|
return " select count(*) from claim,project as source where claim.source_id = source.openaire_id and source.funder_id =?";
|
|
659
|
}
|
|
660
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaimsByFunder(funderId, null,null,keyword,null,false, types, params)+")as claim )";
|
|
661
|
}
|
|
662
|
public String generateCountByContext(String contextId ,String keyword, List<String> types, ArrayList<Object> params) {
|
|
663
|
if((keyword == null || keyword.equals(""))&&types.isEmpty()){
|
|
664
|
params.add(contextId+"%");
|
|
665
|
return " select count(*) from claim where "+" claim.source_id like ?";
|
|
666
|
}
|
|
667
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaimsByContext(contextId, null,null,keyword,null,false, types, params)+")as claim )";
|
|
668
|
|
|
669
|
}
|
|
670
|
public String generateCountByResult(String resultId ,String keyword, List<String> types, ArrayList<Object> params) {
|
|
671
|
if((keyword == null || keyword.equals(""))&&types.isEmpty()){
|
|
672
|
params.add(resultId);
|
|
673
|
params.add(resultId);
|
|
674
|
return " select count(*) from claim where "+" ( claim.source_id= ? or claim.target_id = ? )";
|
|
675
|
}
|
|
676
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaimsByResult(resultId, null,null,keyword,null,false,types, params)+")as claim )";
|
|
677
|
|
|
678
|
}
|
|
679
|
|
|
680
|
public String generateCountAllClaims(String keyword,List<String> types, ArrayList<Object> params) {
|
|
681
|
if((keyword == null || keyword.equals(""))&&types.isEmpty()){
|
|
682
|
String filterByType = addFilterByType(types, params);
|
|
683
|
//if(filterByType!= null){
|
|
684
|
// params.add(filterByType);
|
|
685
|
//}
|
|
686
|
return "select count(*) from claim "+((filterByType==null)?"":" where " + filterByType);
|
|
687
|
}
|
|
688
|
return " select count(*) from claim where claim.id in ( select claim.id from ("+generateFetchClaims(null,null,keyword,null,false,types, params)+" ) as claim )";
|
|
689
|
|
|
690
|
}
|
|
691
|
public String generateFetchAllProjectsQuery() {
|
|
692
|
return " select "+getProjectFields("source")+" from project as source";
|
|
693
|
|
|
694
|
}
|
|
695
|
public String generateFetchAllContextsQuery() {
|
|
696
|
return " select "+getContextFields("source")+" from context as source";
|
|
697
|
}
|
|
698
|
public String generateFetchClaimsByUser(String user, Integer limit, Integer offset,String keyword,String orderBy, boolean desc,List<String> types, ArrayList<Object> params) {
|
|
699
|
// "claim.claim_date", true
|
|
700
|
String clause= " claim.claimedBy=?";
|
|
701
|
ArrayList<Object> clauseParams = new ArrayList<>();
|
|
702
|
clauseParams.add(user);
|
|
703
|
return generateSelectClaimQueryAsUnionOfAllRelations(limit, offset, orderBy,desc,clause,clauseParams, keyword, types, params);
|
|
704
|
|
|
705
|
}
|
|
706
|
/**
|
|
707
|
*
|
|
708
|
* @param limit how many results to return
|
|
709
|
* @param offset starting from
|
|
710
|
* @param keyword containing keyword
|
|
711
|
* @return
|
|
712
|
*/
|
|
713
|
|
|
714
|
public String generateFetchClaims(Integer limit, Integer offset,String keyword,String orderBy, boolean desc,List<String> types, ArrayList<Object> params) {
|
|
715
|
return generateSelectClaimQueryAsUnionOfAllRelations(limit, offset, orderBy,desc,null,null, keyword, types, params)+"";
|
|
716
|
}
|
|
717
|
/**
|
|
718
|
*
|
|
719
|
* @param limit how many results to return
|
|
720
|
* @param offset starting from
|
|
721
|
* @return
|
|
722
|
*/
|
|
723
|
public String generateFetchClaims(Integer limit, Integer offset, String orderBy, boolean desc,List<String> types, ArrayList<Object> params) {
|
|
724
|
String keyword = null;
|
|
725
|
return generateSelectClaimQueryAsUnionOfAllRelations(limit, offset, orderBy,desc,null,null,keyword,types, params)+"";
|
|
726
|
|
|
727
|
}
|
|
728
|
public String generateFetchClaimsByDate(String dateFrom, String dateTo, Integer limit, Integer offset,String keyword, String orderBy, boolean desc,List<String> types, ArrayList<Object> params) {
|
|
729
|
String clause= " claim.claim_date >= ?::timestamp and claim.claim_date <= ?::timestamp ";
|
|
730
|
ArrayList<Object> clauseParams = new ArrayList<>();
|
|
731
|
clauseParams.add(dateFrom);
|
|
732
|
clauseParams.add(dateTo);
|
|
733
|
return generateSelectClaimQueryAsUnionOfAllRelations(limit, offset, orderBy,desc,clause, clauseParams,keyword,types, params);
|
|
734
|
}
|
|
735
|
public String generateFetchClaimsByProject(String projectId, Integer limit, Integer offset,String keyword, String orderBy, boolean desc, List<String> types, ArrayList<Object> params) {
|
|
736
|
String clause = "source.openaire_id =?";
|
|
737
|
ArrayList<Object> clauseParams = new ArrayList<>();
|
|
738
|
clauseParams.add(projectId);
|
|
739
|
String filterByType = addFilterByType(types, clauseParams);
|
|
740
|
clause+= ((filterByType==null)?"":" and ("+filterByType+") ");
|
|
741
|
String query = " select * from ("+" select * from ( " + generateSelectclaimQuery(ClaimUtils.PROJECT, ClaimUtils.PUBLICATION, limit, offset, orderBy, desc, clause, clauseParams, keyword, params) + " ) as claim "+
|
|
742
|
") as claim ";
|
|
743
|
|
|
744
|
return query;
|
|
745
|
}
|
|
746
|
/*
|
|
747
|
public String generateFetchClaimsByProjectToken(String token, String email, Integer limit, Integer offset,String keyword, String orderBy, boolean desc, List<String> types) {
|
|
748
|
String clause = "source.token = '" + token + "' and '" + email + "' = ANY(source.contact_person)";
|
|
749
|
String filterByType = addFilterByType(types);
|
|
750
|
return " select * from ("+" select * from ( " + generateSelectclaimQuery(ClaimUtils.PROJECT, ClaimUtils.PUBLICATION, limit, offset, orderBy, desc, clause, keyword) + " ) as claim "+
|
|
751
|
") as claim "+
|
|
752
|
((filterByType==null)?"":" where "+filterByType+" ");
|
|
753
|
}
|
|
754
|
*/
|
|
755
|
public String generateSelectProjectIdByTokenAndEmailQuery(String token, String email, ArrayList<Object> params) {
|
|
756
|
params.add(token);
|
|
757
|
params.add(email);
|
|
758
|
return "SELECT openaire_id FROM project WHERE token=? AND ?= ANY(contact_person);";
|
|
759
|
}
|
|
760
|
|
|
761
|
public String generateSelectProjectIdByTokenQuery(String token, ArrayList<Object> params) {
|
|
762
|
params.add(token);
|
|
763
|
return "SELECT openaire_id FROM project WHERE token=?;";
|
|
764
|
}
|
|
765
|
|
|
766
|
public String generateFetchClaimsByContext(String contextId, Integer limit, Integer offset,String keyword, String orderBy, boolean desc, List<String> types, ArrayList<Object> params) {
|
|
767
|
String clause= "claim.source_id like ?";
|
|
768
|
ArrayList<Object> clauseParams = new ArrayList<>();
|
|
769
|
clauseParams.add(contextId+'%');
|
|
770
|
String filterByType = addFilterByType(types, clauseParams);
|
|
771
|
clause+= ((filterByType==null)?"":" and ("+filterByType+") ");
|
|
772
|
String query = " select * from ("+" ( " +generateSelectclaimQuery(ClaimUtils.CONTEXT,ClaimUtils.PUBLICATION,limit, offset, orderBy,desc,clause,clauseParams, keyword, params)+")"+
|
|
773
|
") as claim ";
|
|
774
|
return query;
|
|
775
|
}
|
|
776
|
public String generateFetchClaimsByFunder(String funderId, Integer limit, Integer offset,String keyword, String orderBy, boolean desc, List<String> types, ArrayList<Object> params) {
|
|
777
|
String whereClause = "source_id =source.openaire_id ";
|
|
778
|
ArrayList<Object> whereParams = new ArrayList<>();
|
|
779
|
String filterByType = addFilterByType(types, whereParams);
|
|
780
|
whereClause+= ((filterByType==null)?"":" and ("+filterByType+") ");
|
|
781
|
String query = " select * from ("+" ( " +generateSelectclaimQuery(ClaimUtils.PROJECT,ClaimUtils.PUBLICATION, limit, offset, orderBy,desc,whereClause,whereParams, keyword, params)+" )"+
|
|
782
|
") as claim ";
|
|
783
|
|
|
784
|
|
|
785
|
return query;
|
|
786
|
}
|
|
787
|
public String generateFetchClaimsByResult(String resultId, Integer limit, Integer offset, String keyword, String orderBy, boolean desc, List<String> types, ArrayList<Object> params) {
|
|
788
|
String queryWhereClause=" ( source.openaire_id = ? or target.openaire_id = ? )";
|
|
789
|
ArrayList<Object> whereParams = new ArrayList<>();
|
|
790
|
whereParams.add(resultId);
|
|
791
|
whereParams.add(resultId);
|
|
792
|
String filterByType = addFilterByType(types, whereParams);
|
|
793
|
queryWhereClause+= ((filterByType==null)?"":" and ("+filterByType+") ");
|
|
794
|
String query = " select * from ("+" ( " +generateSelectclaimQuery(ClaimUtils.PUBLICATION,ClaimUtils.PUBLICATION, limit, offset, orderBy,desc,queryWhereClause,whereParams, keyword, params)+" ) \nunion "+
|
|
795
|
" ( " +generateSelectclaimQuery(ClaimUtils.PROJECT,ClaimUtils.PUBLICATION, limit, offset, orderBy,desc,queryWhereClause,whereParams, keyword, params)+" ) \nunion "+
|
|
796
|
" ( " +generateSelectclaimQuery(ClaimUtils.CONTEXT,ClaimUtils.PUBLICATION, limit, offset, orderBy,desc,queryWhereClause,whereParams, keyword, params)+" ) "+
|
|
797
|
") as claim ";
|
|
798
|
|
|
799
|
return query;
|
|
800
|
|
|
801
|
}
|
|
802
|
|
|
803
|
public String generateFetchClaimsByClaimId(String claimId, String sourceType, String targetType, ArrayList<Object> params) {
|
|
804
|
String keyword = null;
|
|
805
|
String clause= " claim.id = ?::int ";
|
|
806
|
ArrayList<Object> clauseParams = new ArrayList<>();
|
|
807
|
clauseParams.add(claimId);
|
|
808
|
String orderbyLimitClause= null;
|
|
809
|
if(sourceType.equals(ClaimUtils.PUBLICATION)||sourceType.equals(ClaimUtils.DATASET)||sourceType.equals(ClaimUtils.SOFTWARE)||sourceType.equals(ClaimUtils.OTHER)){
|
|
810
|
return generateSelectclaimQuery(sourceType,targetType,null,null,null,false, clause,clauseParams,keyword, params);
|
|
811
|
}else if(sourceType.equals(ClaimUtils.PROJECT)){
|
|
812
|
return generateSelectclaimQuery(sourceType,targetType,null,null,null,false, clause,clauseParams,keyword, params);
|
|
813
|
}else if(sourceType.equals(ClaimUtils.CONTEXT)){
|
|
814
|
return generateSelectclaimQuery(sourceType,targetType,null,null,null,false, clause,clauseParams,keyword, params);
|
|
815
|
}
|
|
816
|
return null;
|
|
817
|
}
|
|
818
|
|
|
819
|
private String getClaimFields() {
|
|
820
|
return " claim.id, claim.claim_date, claim.claimedBy, claim.source_type, claim.target_type, claim.semantics, claim.curation_date, claim.curated_by, claim.approved ";
|
|
821
|
}
|
|
822
|
private String getResultFields(String tableAlias) {
|
|
823
|
return " "+tableAlias+".openaire_id, "+tableAlias+".title "+tableAlias+"_title, "+tableAlias+".result_type, "+tableAlias+".doi, "+tableAlias+".orcidworkid, "+tableAlias+".access_rights, "+tableAlias+".embargo_end_date, "+tableAlias+".best_license, "+tableAlias+".external_url, "+tableAlias+".collected_from ";
|
|
824
|
}
|
|
825
|
private String getProjectFields(String tableAlias) {
|
|
826
|
return " "+tableAlias+".openaire_id, "+tableAlias+".name as "+tableAlias+"_title, "+tableAlias+".acronym, "+tableAlias+".funder_id, "+tableAlias+".funder_name, null as field6, null as field7, null as field8, null as field9, null as field10 ";
|
|
827
|
}
|
|
828
|
private String getContextFields(String tableAlias) {
|
|
829
|
return " "+tableAlias+".openaire_id, "+tableAlias+".name "+tableAlias+"_title, "+" null as field3, null as field4, null as field5, null as field6, null as field7, null as field8, null as field9, null as field10 ";
|
|
830
|
}
|
|
831
|
|
|
832
|
private String getFieldsPerType(String type, String tableAlias){
|
|
833
|
String fields= null;
|
|
834
|
|
|
835
|
if (type != null) {
|
|
836
|
if (type.equals(ClaimUtils.PUBLICATION) || type.equals(ClaimUtils.DATASET) || type.equals(ClaimUtils.SOFTWARE)||type.equals(ClaimUtils.OTHER)) {
|
|
837
|
fields = getResultFields(tableAlias);
|
|
838
|
|
|
839
|
} else if (type.equals(ClaimUtils.PROJECT)) {
|
|
840
|
fields = getProjectFields(tableAlias);
|
|
841
|
|
|
842
|
} else if (type.equals(ClaimUtils.CONTEXT)) {
|
|
843
|
fields = getContextFields(tableAlias);
|
|
844
|
}
|
|
845
|
}
|
|
846
|
|
|
847
|
return fields;
|
|
848
|
}
|
|
849
|
//private String generateSelectclaimQuery(String sourceType, String targetType, Integer limit,Integer offset,String orderBy, boolean desc,String whereClause, String keyword, ArrayList<Object> params) {
|
|
850
|
private String generateSelectclaimQuery(String sourceType, String targetType, Integer limit,Integer offset,String orderBy, boolean desc,String whereClause, ArrayList<Object> whereParams, String keyword, ArrayList<Object> params) {
|
|
851
|
if(sourceType == null || targetType == null){
|
|
852
|
return null;
|
|
853
|
}
|
|
854
|
/*
|
|
855
|
" select "+getClaimFields()+" ,"+getFieldsPerType(sourceType, "source")+" , "+getFieldsPerType(targetType,"target")+
|
|
856
|
" \nfrom claim, "+getTypeForTable(sourceType)+" as source, "+getTypeForTable(targetType)+" as target \n" +
|
|
857
|
"where claim.source_id = source.openaire_id and claim.target_id = target.openaire_id "+((specificWhereClause==null)?"":" and "+specificWhereClause+" ");
|
|
858
|
*/
|
|
859
|
String orderByClause= addOrderByClause(orderBy,desc);
|
|
860
|
String pagingClause= addPagingClause(limit,offset);
|
|
861
|
String query = " select "+getClaimFields()+" ,"+getFieldsPerType(sourceType, "source")+" , "+getFieldsPerType(targetType,"target")+
|
|
862
|
" \nfrom claim, "+getTypeForTable(sourceType)+" as source, has_source_"+getTypeForTable(sourceType)+", has_target_"+getTypeForTable(targetType)+", "+getTypeForTable(targetType)+" as target \n" +
|
|
863
|
"where claim.id = has_source_"+getTypeForTable(sourceType)+".claim_id and has_source_"+getTypeForTable(sourceType)+".openaire_id = source.openaire_id " +
|
|
864
|
"and claim.id = has_target_"+getTypeForTable(targetType)+".claim_id and has_target_"+getTypeForTable(targetType)+".openaire_id = target.openaire_id "+
|
|
865
|
((keyword==null)?"":(" and ("+getKeywordClauseForType(sourceType, "source", keyword, params)+" or "+getKeywordClauseForType(targetType, "target", keyword, params)+" ")+" or "+getKeywordClauseForClaim( keyword, params)+" )")+
|
|
866
|
((whereClause==null)?"":" and "+whereClause+" ")+
|
|
867
|
((orderByClause==null)?"":" "+orderByClause+" ")+
|
|
868
|
pagingClause;
|
|
869
|
if(whereParams != null && !whereParams.isEmpty()) {
|
|
870
|
params.addAll(whereParams);
|
|
871
|
}
|
|
872
|
return query;
|
|
873
|
}
|
|
874
|
private String getKeywordClauseForType(String type,String tableAlias,String keyword, ArrayList<Object> params){
|
|
875
|
if (type == null ||keyword == null){
|
|
876
|
return "";
|
|
877
|
}
|
|
878
|
keyword=keyword.toLowerCase();
|
|
879
|
if (type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.SOFTWARE)||type.equals(ClaimUtils.OTHER)){
|
|
880
|
params.add("%" + keyword + "%");
|
|
881
|
params.add("%" + keyword + "%");
|
|
882
|
return " (lower("+tableAlias+".title) like ? or lower("+tableAlias+".doi) like ?"+")";
|
|
883
|
}else if (type.equals(ClaimUtils.PROJECT)){
|
|
884
|
params.add("%" + keyword + "%");
|
|
885
|
params.add("%" + keyword + "%");
|
|
886
|
params.add("%" + keyword + "%");
|
|
887
|
params.add("%" + keyword + "%");
|
|
888
|
return " (lower("+tableAlias+".name) like ? or lower("+tableAlias+".acronym) like ? or lower("+tableAlias+".funder_name) like ? or lower("+tableAlias+".funder_acronym) like ? "+")";
|
|
889
|
}else if (type.equals(ClaimUtils.CONTEXT)){
|
|
890
|
params.add("%" + keyword + "%");
|
|
891
|
return " (lower("+tableAlias+".name) like ? )";
|
|
892
|
}
|
|
893
|
return "";
|
|
894
|
}
|
|
895
|
private String getKeywordClauseForClaim(String keyword, ArrayList<Object> params){
|
|
896
|
if (keyword == null){
|
|
897
|
return "";
|
|
898
|
}else {
|
|
899
|
params.add("%" + keyword.toLowerCase() + "%");
|
|
900
|
return " (lower(claim.claimedby) like ?)";
|
|
901
|
}
|
|
902
|
}
|
|
903
|
private String generateSelectClaimQueryAsUnionOfAllRelations(Integer limit,Integer offset,String orderBy, boolean desc,String specificWhereClause,ArrayList<Object> whereParams, String keyword,List<String> types, ArrayList<Object> params) {
|
|
904
|
//TODO eliminate unions based on the to
|
|
905
|
// ClaimUtils.PUBLICATION or ClaimUtils.DATASET it
|
|
906
|
String orderByClause= addOrderByClause(orderBy,desc);
|
|
907
|
String pagingClause= addPagingClause(limit,offset);
|
|
908
|
String query = "select * from ("+
|
|
909
|
|
|
910
|
" ( " +generateSelectclaimQuery(ClaimUtils.PUBLICATION,ClaimUtils.PUBLICATION,null,null,null,false, specificWhereClause,whereParams,keyword, params)+" ) \nunion "+
|
|
911
|
" ( " +generateSelectclaimQuery(ClaimUtils.DATASET,ClaimUtils.DATASET,null,null,null,false, specificWhereClause, whereParams,keyword, params)+" ) \nunion "+
|
|
912
|
" ( " +generateSelectclaimQuery(ClaimUtils.SOFTWARE,ClaimUtils.SOFTWARE,null,null,null,false, specificWhereClause, whereParams,keyword, params)+" ) \nunion "+
|
|
913
|
" ( " +generateSelectclaimQuery(ClaimUtils.OTHER,ClaimUtils.OTHER,null,null,null,false, specificWhereClause, whereParams,keyword, params)+" ) \nunion "+
|
|
914
|
" ( " +generateSelectclaimQuery(ClaimUtils.PROJECT,ClaimUtils.PUBLICATION, null,null,null,false, specificWhereClause, whereParams,keyword, params)+" ) \nunion "+
|
|
915
|
" ( " +generateSelectclaimQuery(ClaimUtils.CONTEXT,ClaimUtils.PUBLICATION,null,null,null,false, specificWhereClause, whereParams, keyword, params)+" )" +
|
|
916
|
|
|
917
|
") as claim ";
|
|
918
|
String filterByType = addFilterByType(types, params);
|
|
919
|
query += ((filterByType==null)?"":" where "+filterByType+" ")+
|
|
920
|
((orderByClause==null)?"":" "+orderByClause+" ")+
|
|
921
|
pagingClause;
|
|
922
|
|
|
923
|
return query;
|
|
924
|
}
|
|
925
|
private String getTypeForTable(String type){
|
|
926
|
if(type == null){
|
|
927
|
return null;
|
|
928
|
}
|
|
929
|
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET) ||type.equals(ClaimUtils.SOFTWARE)||type.equals(ClaimUtils.OTHER)){
|
|
930
|
return "result";
|
|
931
|
}else{
|
|
932
|
return type;
|
|
933
|
}
|
|
934
|
}
|
|
935
|
/**
|
|
936
|
** Update - Queries *New* Database **
|
|
937
|
**/
|
|
938
|
|
|
939
|
private void updateResult(){
|
|
940
|
|
|
941
|
}
|
|
942
|
private void updateProject(){
|
|
943
|
|
|
944
|
}
|
|
945
|
/**
|
|
946
|
** Delete - Queries *New* Database **
|
|
947
|
**/
|
|
948
|
|
|
949
|
private String generateDeleteEntityQuery(String resultid, String claimId, String type, ArrayList<Object> params){
|
|
950
|
if(type == null||resultid == null||claimId == null ){
|
|
951
|
return null;
|
|
952
|
}
|
|
953
|
String query = null;
|
|
954
|
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET) ||type.equals(ClaimUtils.SOFTWARE) ||type.equals(ClaimUtils.OTHER)){
|
|
955
|
query = generateDeleteResultQuery(resultid,claimId, params);
|
|
956
|
}else if(type.equals(ClaimUtils.PROJECT)){
|
|
957
|
query = generateDeleteProjectQuery(resultid,claimId, params);
|
|
958
|
}else if (type.equals(ClaimUtils.CONTEXT)){
|
|
959
|
query = generateDeleteContextQuery(resultid,claimId, params);
|
|
960
|
}
|
|
961
|
return query;
|
|
962
|
}
|
|
963
|
/*
|
|
964
|
Before delete check a Result, Project, Context
|
|
965
|
check if there is another claim in has_source_* or has_target_* relation
|
|
966
|
for the entity
|
|
967
|
*/
|
|
968
|
private String generateDeleteResultQuery(String resultid, String claimId, ArrayList<Object> params){
|
|
969
|
params.add(resultid);
|
|
970
|
String query = " DELETE FROM "+getTypeForTable(ClaimUtils.PUBLICATION)+" WHERE openaire_id = ? and NOT EXISTS \n" +
|
|
971
|
" ( " +generateSelectOthersFromRelationTableQuery(resultid,claimId,getSourceTableName(ClaimUtils.PUBLICATION), params) + " union " +
|
|
972
|
generateSelectOthersFromRelationTableQuery(resultid,claimId,getTargetTableName(ClaimUtils.PUBLICATION), params)+" ) ;\n" ;
|
|
973
|
return query;
|
|
974
|
}
|
|
975
|
private String generateDeleteProjectQuery(String resultid, String claimId, ArrayList<Object> params){
|
|
976
|
params.add(resultid);
|
|
977
|
String query = " DELETE FROM "+getTypeForTable(ClaimUtils.PROJECT)+" WHERE openaire_id = ? and NOT EXISTS \n" +
|
|
978
|
" ( " +generateSelectOthersFromRelationTableQuery(resultid,claimId,getSourceTableName(ClaimUtils.PROJECT), params) + " union " +
|
|
979
|
generateSelectOthersFromRelationTableQuery(resultid,claimId,getTargetTableName(ClaimUtils.PROJECT), params)+" ) ;\n" ;
|
|
980
|
return query;
|
|
981
|
}
|
|
982
|
private String generateDeleteContextQuery(String resultid, String claimId, ArrayList<Object> params){
|
|
983
|
params.add(resultid);
|
|
984
|
String query = " DELETE FROM "+getTypeForTable(ClaimUtils.CONTEXT)+" WHERE openaire_id = ? and NOT EXISTS \n" +
|
|
985
|
" ( " +generateSelectOthersFromRelationTableQuery(resultid,claimId,getSourceTableName(ClaimUtils.CONTEXT), params) +" ) ;\n" ;
|
|
986
|
return query;
|
|
987
|
}
|
|
988
|
|
|
989
|
public String generateCountClaimsForResultQuery(String resultId){
|
|
990
|
return " Select count(*) from claim where source_id = '"+ resultId +"' or target_id = '"+resultId+"' ";
|
|
991
|
}
|
|
992
|
public String generateSelectResultSource(String resultId){
|
|
993
|
return " Select collected_from from result where openaire_id = '"+ resultId +"' ";
|
|
994
|
}
|
|
995
|
|
|
996
|
/**
|
|
997
|
* Select form a has_source_* or has_target_* table
|
|
998
|
* ...
|
|
999
|
* @param resultid
|
|
1000
|
* @param claimId
|
|
1001
|
* @param tableName
|
|
1002
|
* @return
|
|
1003
|
*/
|
|
1004
|
private String generateSelectOthersFromRelationTableQuery(String resultid, String claimId , String tableName, ArrayList<Object> params){
|
|
1005
|
params.add(resultid);
|
|
1006
|
params.add(claimId);
|
|
1007
|
String query =
|
|
1008
|
" SELECT 1 FROM "+ tableName+" WHERE openaire_id = ? and claim_id != ?::int " ;
|
|
1009
|
return query;
|
|
1010
|
}
|
|
1011
|
public String generateDeleteFullClaimQuery(String id, String user, String sourceType, String sourceId, String targetType, String targetId, ArrayList<Object> params){
|
|
1012
|
//TODO generate delete query
|
|
1013
|
params.add(id);
|
|
1014
|
params.add(id);
|
|
1015
|
params.add(id);
|
|
1016
|
String query =
|
|
1017
|
"BEGIN;\n" +
|
|
1018
|
//delete has_source_*
|
|
1019
|
"DELETE FROM "+ getSourceTableName(sourceType)+" WHERE claim_id = ?::int ;\n" +
|
|
1020
|
|
|
1021
|
//delete has_target_*
|
|
1022
|
"DELETE FROM "+ getTargetTableName(targetType)+" WHERE claim_id = ?::int ;\n" +
|
|
1023
|
|
|
1024
|
//delete claim
|
|
1025
|
"DELETE FROM claim where id = ?::int ;\n" +
|
|
1026
|
|
|
1027
|
//delete source
|
|
1028
|
generateDeleteEntityQuery(sourceId,id,sourceType, params)+
|
|
1029
|
|
|
1030
|
//delete target
|
|
1031
|
generateDeleteEntityQuery(targetId,id,targetType, params)+
|
|
1032
|
"COMMIT";
|
|
1033
|
return query;
|
|
1034
|
}
|
|
1035
|
public String generateSelectClaimQuery(String id, String user, ArrayList<Object> params){
|
|
1036
|
|
|
1037
|
params.add(id);
|
|
1038
|
params.add(user);
|
|
1039
|
String query =" ";
|
|
1040
|
return " Select id, source_type, source_id, target_type, target_id from claim where id = ?::int and claimedBy = ? ";
|
|
1041
|
}
|
|
1042
|
|
|
1043
|
public String generateSelectClaimQuery(String id, ArrayList<Object> params){
|
|
1044
|
|
|
1045
|
params.add(id);
|
|
1046
|
String query =" ";
|
|
1047
|
return " Select id, source_type, source_id, target_type, target_id,claimedBy from claim where id = ?::int";
|
|
1048
|
}
|
|
1049
|
/**
|
|
1050
|
* used to fetch the information from DB
|
|
1051
|
* @param ids
|
|
1052
|
* @param users
|
|
1053
|
* @return
|
|
1054
|
*/
|
|
1055
|
public String generateSelectClaimQuery(List<String> ids, List<String> users, ArrayList<Object> params){
|
|
1056
|
|
|
1057
|
String query =" Select id, source_type, source_id, target_type, target_id from claim where ";
|
|
1058
|
if(ids.size()>0 && users.size() > 0 && ids.size() == users.size()) {
|
|
1059
|
for (int i = 0; i < ids.size(); i++) {
|
|
1060
|
query+=" ( id = ? and claimedBy = ? ) or";
|
|
1061
|
params.add(ids.get(i));
|
|
1062
|
params.add(users.get(i));
|
|
1063
|
}
|
|
1064
|
query = query.substring(0, query.length()-2);
|
|
1065
|
return query;
|
|
1066
|
}
|
|
1067
|
return null;
|
|
1068
|
}
|
|
1069
|
|
|
1070
|
public String generateSelectProjectByIdQuery(String projectId, ArrayList<Object> params) {
|
|
1071
|
params.add(projectId);
|
|
1072
|
return " Select " + getProjectFields("project") + " from project where openaire_id = ?";
|
|
1073
|
}
|
|
1074
|
|
|
1075
|
public String generateSelectContactEmailsByProjectIdQuery(String projectId, ArrayList<Object> params) {
|
|
1076
|
params.add(projectId);
|
|
1077
|
return " Select contact_person from project where openaire_id = ?";
|
|
1078
|
}
|
|
1079
|
|
|
1080
|
public String generateUpdateTokenByProjectId(String projectdId, String newToken, ArrayList<Object> params) {
|
|
1081
|
params.add(newToken);
|
|
1082
|
params.add(projectdId);
|
|
1083
|
return "UPDATE project SET token = ? WHERE openaire_id = ?";
|
|
1084
|
}
|
|
1085
|
public String generateUpdateContactEmailsByProjectIdByProjectId(String projectdId, List<String> contactEmails, ArrayList<Object> params) {
|
|
1086
|
String emails = "";
|
|
1087
|
if(contactEmails != null && contactEmails.size() > 0){
|
|
1088
|
//emails+="'{";
|
|
1089
|
for(int i = 0; i< contactEmails.size(); i++){
|
|
1090
|
|
|
1091
|
emails+=contactEmails.get(i)+((i < contactEmails.size() -1 )?",":"");
|
|
1092
|
//params.add(contactEmails.get(i));
|
|
1093
|
}
|
|
1094
|
//emails+="}'";
|
|
1095
|
}
|
|
1096
|
|
|
1097
|
params.add(emails);
|
|
1098
|
params.add(projectdId);
|
|
1099
|
return "UPDATE project SET contact_person = string_to_array(?, ',') WHERE openaire_id = ?;";
|
|
1100
|
}
|
|
1101
|
|
|
1102
|
public String generateUpdateClaimCuration(String curatedBy, String claimId, boolean approved, ArrayList<Object> params) {
|
|
1103
|
SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
|
|
1104
|
Date date = new Date();
|
|
1105
|
String dateStr=null;
|
|
1106
|
dateStr=(format.format(date));
|
|
1107
|
|
|
1108
|
params.add(dateStr);
|
|
1109
|
params.add(curatedBy);
|
|
1110
|
params.add(approved);
|
|
1111
|
params.add(claimId);
|
|
1112
|
String query = "UPDATE claim "
|
|
1113
|
+ "SET curation_date = ?::timestamp, curated_by = ?, approved = ? "
|
|
1114
|
+ "WHERE id = ?::int";// RETURNING curation_date, curated_by, approved";
|
|
1115
|
|
|
1116
|
logger.debug("Query to execute: "+query);
|
|
1117
|
|
|
1118
|
return query;
|
|
1119
|
}
|
|
1120
|
|
|
1121
|
public String getMigrationTable() {
|
|
1122
|
return migrationTable;
|
|
1123
|
}
|
|
1124
|
|
|
1125
|
public void setMigrationTable(String migrationTable) {
|
|
1126
|
this.migrationTable = migrationTable;
|
|
1127
|
}
|
|
1128
|
}
|