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<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xmlns:oaf="http://namespace.openaire.eu/oaf"
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xsi:schemaLocation="http://namespace.openaire.eu/oaf http://datathon.openaire.eu/datathon-schema/oaf-publication-1.1.xsd">
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<oaf:publisher>PeerJ Inc.</oaf:publisher>
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<oaf:language code="eng">English</oaf:language>
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<oaf:journal issn="2167-8359" eissn="2167-8359" lissn="" ep="" iss="" sp="" vol="3">PeerJ</oaf:journal>
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<oaf:description>Yeasts play an important role in the biology of the fruit fly,
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Drosophila melanogaster. In addition to being a valuable source of nutrition,
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yeasts affect D. melanogaster behavior and interact with the host immune system.
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Most experiments investigating the role of yeasts in D. melanogaster biology use
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the baker’s yeast, Saccharomyces cerevisiae. However, S. cerevisiae is rarely
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found with natural populations of D. melanogaster or other Drosophila species.
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Moreover, the strain of S. cerevisiae used most often in D. melanogaster
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experiments is a commercially and industrially important strain that, to the
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best of our knowledge, was not isolated from flies. Since disrupting natural
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host–microbe interactions can have profound effects on host biology, the results
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from D. melanogaster–S. cerevisiae laboratory experiments may not be fully
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representative of host–microbe interactions in nature. In this study, we explore
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the D. melanogaster-yeast relationship using five different strains of yeast
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that were isolated from wild Drosophila populations. Ingested live yeasts have
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variable persistence in the D. melanogaster gastrointestinal tract. For example,
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Hanseniaspora occidentalis persists relative to S. cerevisiae, while
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Brettanomyces naardenensis is removed. Despite these differences in persistence
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relative to S. cerevisiae, we find that all yeasts decrease in total abundance
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over time. Reactive oxygen species (ROS) are an important component of the D.
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melanogaster anti-microbial response and can inhibit S. cerevisiae growth in the
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intestine. To determine if sensitivity to ROS explains the differences in yeast
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persistence, we measured yeast growth in the presence and absence of hydrogen
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peroxide. We find that B. naardenesis is completely inhibited by hydrogen
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peroxide, while H. occidentalis is not, which is consistent with yeast
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sensitivity to ROS affecting persistence within the D. melanogaster
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gastrointestinal tract. We also compared the feeding preference of D.
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melanogaster when given the choice between a naturally associated yeast and S.
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cerevisiae. We do not find a correlation between preferred yeasts and those that
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persist in the intestine. Notably, in no instances is S. cerevisiae preferred
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over the naturally associated strains. Overall, our results show that D.
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melanogaster-yeast interactions are more complex than might be revealed in
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experiments that use only S. cerevisiae. We propose that future research utilize
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other yeasts, and especially those that are naturally associated with
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Drosophila, to more fully understand the role of yeasts in Drosophila biology.
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Since the genetic basis of host–microbe interactions is shared across taxa and
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since many of these genes are initially discovered in D. melanogaster, a more
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realistic fly-yeast model system will benefit our understanding of host–microbe
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interactions throughout the animal kingdom.</oaf:description>
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<oaf:resulttitle>Interactions between Drosophila and its natural
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yeast symbionts—Is Saccharomyces cerevisiae a good model for studying the
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fly-yeast relationship?</oaf:resulttitle>
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<oaf:resulttype>publication</oaf:resulttype>
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<oaf:subject type="keyword">Symbiosis</oaf:subject>
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<oaf:subject type="keyword">Yeast</oaf:subject>
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<oaf:subject type="keyword">Microbiology</oaf:subject>
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<oaf:subject type="keyword">Entomology</oaf:subject>
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<oaf:subject type="keyword">Mycology</oaf:subject>
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<oaf:subject type="keyword">Ecology</oaf:subject>
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<oaf:subject type="keyword">Medicine</oaf:subject>
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<oaf:subject type="keyword">Host-microbe
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interactions</oaf:subject>
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<oaf:subject type="keyword">Microbiota</oaf:subject>
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<oaf:subject type="keyword">R</oaf:subject>
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<oaf:subject type="keyword">Baker’s yeast</oaf:subject>
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<oaf:subject type="keyword">Drosophila
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melanogaster</oaf:subject>
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<oaf:subject type="keyword">Saccharomyces
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cerevisiae</oaf:subject>
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<oaf:subject type="keyword">Microbiome</oaf:subject>
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<oaf:source>PeerJ, Vol 3, p e1116 (2015)</oaf:source>
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<oaf:source>PeerJ</oaf:source>
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<oaf:dateofacceptance>2015-08-01</oaf:dateofacceptance>
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<oaf:embargoenddate/>
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<oaf:pid type="doi">10.7717/peerj.1116</oaf:pid>
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<oaf:pid type="pmc">PMC4556146</oaf:pid>
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<oaf:originalId>oai:doaj.org/article:8eb1718ccf7843a4a5d9a98c967c68c2</oaf:originalId>
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<oaf:originalId>oai:europepmc.org:3535765</oaf:originalId>
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<oaf:collectedfrom name="DOAJ-Articles"/>
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<oaf:collectedfrom name="Europe PubMed Central"/>
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<oaf:bestaccessrights code="OPEN">Open Access</oaf:bestaccessrights>
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<oaf:creator rank="2">Artyom Kopp</oaf:creator>
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<oaf:creator rank="1">Don Hoang</oaf:creator>
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<oaf:creator rank="3">James Angus Chandler</oaf:creator>
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<oaf:relationships>
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<oaf:relationship semantics="isRelatedTo" provenance="inference">
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<oaf:target type="result" id="r37980778c78::c9e861e94903bc8ff837384c570068d0">
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<oaf:publisher>Figshare</oaf:publisher>
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<oaf:resulttitle>Bacterial Communities of Diverse Species:
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Ecological Context of a Host–Microbe Model System</oaf:resulttitle>
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<oaf:resulttype>dataset</oaf:resulttype>
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<oaf:dateofacceptance>2011-01-01</oaf:dateofacceptance>
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</oaf:target>
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</oaf:relationship>
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<oaf:relationship semantics="isRelatedTo" provenance="inference">
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<oaf:target type="result" id="r37980778c78::3abf018d4228c4443af8bd7c5fbcaed1">
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<oaf:publisher>Figshare</oaf:publisher>
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<oaf:resulttitle> mitochondria are required for
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optimal attractiveness to </oaf:resulttitle>
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<oaf:resulttype>dataset</oaf:resulttype>
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<oaf:dateofacceptance>2014-01-01</oaf:dateofacceptance>
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</oaf:target>
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</oaf:relationship>
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<oaf:relationship semantics="isRelatedTo" provenance="inference">
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<oaf:target type="result" id="r37980778c78::4d4a4d8e345c70ef30cfd51568b820f2">
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<oaf:publisher>Figshare</oaf:publisher>
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<oaf:resulttitle> Regulate Yeast Density and Increase Yeast
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Community Similarity in a Natural Substrate</oaf:resulttitle>
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<oaf:resulttype>dataset</oaf:resulttype>
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<oaf:dateofacceptance>2012-01-01</oaf:dateofacceptance>
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</oaf:target>
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</oaf:relationship>
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<oaf:relationship semantics="isRelatedTo" provenance="inference">
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<oaf:target type="result" id="r37980778c78::58f63958f2c02db0646478a230030587">
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<oaf:publisher>Figshare</oaf:publisher>
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<oaf:resulttitle>Yeast
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Communities of Diverse Drosophila Species: Comparison of Two Symbiont
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Groups in the Same Hosts</oaf:resulttitle>
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<oaf:resulttype>dataset</oaf:resulttype>
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<oaf:dateofacceptance>2013-01-01</oaf:dateofacceptance>
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</oaf:target>
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</oaf:relationship>
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<oaf:relationship semantics="isRelatedTo" provenance="inference">
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<oaf:target type="result" id="r37980778c78::ad956f8e1257fdd1c21bdf06f40ae6ec">
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<oaf:publisher>Figshare</oaf:publisher>
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<oaf:resulttitle>Impact
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of the Resident Microbiota on the Nutritional Phenotype of
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</oaf:resulttitle>
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<oaf:resulttype>dataset</oaf:resulttype>
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<oaf:dateofacceptance>2012-01-01</oaf:dateofacceptance>
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</oaf:target>
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</oaf:relationship>
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<oaf:relationship semantics="isRelatedTo" provenance="inference">
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<oaf:target type="result" id="r37980778c78::ba34d48e024dc31218ce5b0d0fb3e97c">
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<oaf:publisher>Figshare</oaf:publisher>
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<oaf:resulttitle>Quantifying Variation in the Ability of Yeasts to Attract </oaf:resulttitle>
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<oaf:resulttype>dataset</oaf:resulttype>
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<oaf:dateofacceptance>2013-01-01</oaf:dateofacceptance>
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</oaf:target>
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<oaf:target type="result" id="r37980778c78::87305c2a733558211129d80012e24609">
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<oaf:publisher>Figshare</oaf:publisher>
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<oaf:resulttitle>Host
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Species and Environmental Effects on Bacterial Communities Associated
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with in the Laboratory and in the Natural
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Environment</oaf:resulttitle>
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<oaf:resulttype>dataset</oaf:resulttype>
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<oaf:dateofacceptance>2013-01-01</oaf:dateofacceptance>
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</oaf:target>
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<oaf:projecttitle>Convergent evolution of color patterns through changes in different
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genes</oaf:projecttitle>
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<oaf:code>1256420</oaf:code>
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<oaf:contracttype code="Continuing grant">Continuing grant</oaf:contracttype>
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<oaf:funding>
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<oaf:funder id="nsf_________::NSF" shortname="NSF" name="National Science Foundation" jurisdiction="US"/>
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<oaf:funding_level_0 name="Directorate for Biological Sciences">nsf_________::NSF::BIO/OAD</oaf:funding_level_0>
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<oaf:funding_level_1 name="Division of Integrative Organismal Systems">nsf_________::NSF::BIO/OAD::BIO/IOS</oaf:funding_level_1>
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</oaf:funding>
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<oaf:hostedby name="Europe PubMed Central"/>
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<oaf:accessrights code="OPEN">Open Access</oaf:accessrights>
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<oaf:instancetype>Article</oaf:instancetype>
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<oaf:url>http://europepmc.org/articles/PMC4556146</oaf:url>
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<oaf:accessrights code="OPEN">Open Access</oaf:accessrights>
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<oaf:instancetype>Article</oaf:instancetype>
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<oaf:webresource>
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<oaf:url>https://peerj.com/articles/1116/</oaf:url>
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</oaf:webresource>
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<oaf:webresource>
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<oaf:url>https://peerj.com/articles/1116.pdf</oaf:url>
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</oaf:webresource>
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<oaf:webresource>
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<oaf:url>https://doaj.org/toc/2167-8359</oaf:url>
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<oaf:citations provenance="iis::document_referencedDocuments" trust="0.9">
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<oaf:citation position="1">
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<oaf:rawText>Anagnostou, C, Dorsch, M, Rohlfs, M. Influence of dietary yeasts on Drosophila
|
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melanogaster life-history traits. Entomologia Experimentalis et Applicata. 2010; 136:
|
189
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1-11</oaf:rawText>
|
190
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<oaf:id value="10.1111/j.1570-7458.2010.00997.x" type="doi" confidenceLevel="0.9"/>
|
191
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</oaf:citation>
|
192
|
<oaf:citation position="2">
|
193
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<oaf:rawText>Blum, JE, Fischer, CN, Miles, J, Handelsman, J. Frequent replenishment
|
194
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sustains the beneficial microbiome of Drosophila melanogaster. mBio. 2013;
|
195
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4</oaf:rawText>
|
196
|
<oaf:id value="od_______908::7ab34d4207b9fbde6ebc88b9fed70534" type="openaire"
|
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confidenceLevel="0.9"/>
|
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<oaf:id value="10.1128/mBio.00860-13" type="doi" confidenceLevel="0.9"/>
|
199
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</oaf:citation>
|
200
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<oaf:citation position="3">
|
201
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<oaf:rawText>Boynton, PJ, Greig, D. The ecology and evolution of non-domesticated
|
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Saccharomyces species. Yeast. 2014; 31: 449-462</oaf:rawText>
|
203
|
<oaf:id value="od_______908::f9b7dad2c924b8d04af05f0ade74813e" type="openaire"
|
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confidenceLevel="0.9"/>
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<oaf:id value="25242436" type="pmid" confidenceLevel="0.9"/>
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<oaf:id value="10.1002/yea.3040" type="doi" confidenceLevel="0.9"/>
|
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</oaf:citation>
|
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<oaf:citation position="4">
|
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<oaf:rawText>Broderick, NA, Lemaitre, B. Gut-associated microbes of Drosophila
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melanogaster. Gut Microbes. 2012; 3: 307-321</oaf:rawText>
|
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<oaf:id value="dedup_wf_001::6bd57061dc4f754f0cbad5fb6efe3733" type="openaire"
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confidenceLevel="0.9"/>
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<oaf:id value="22572876" type="pmid" confidenceLevel="0.9"/>
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<oaf:id value="10.4161/gmic.19896" type="doi" confidenceLevel="0.9"/>
|
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</oaf:citation>
|
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<oaf:citation position="5">
|
217
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<oaf:rawText>Broderick, NA, Buchon, N, Lemaitre, B. Microbiota-induced changes in
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Drosophila melanogaster host gene expression and gut morphology. MBio. 2014;
|
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5</oaf:rawText>
|
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<oaf:id value="dedup_wf_001::01b40887523fbaee6fa0acf6ecd01fd9" type="openaire"
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confidenceLevel="0.9"/>
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<oaf:id value="10.1128/mBio.01117-14" type="doi" confidenceLevel="0.9"/>
|
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</oaf:citation>
|
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<oaf:citation position="6">
|
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<oaf:rawText>Brummel, T, Ching, A, Seroude, L, Simon, AF, Benzer, S. Drosophila lifespan
|
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enhancement by exogenous bacteria. Proceedings of the National Academy of Sciences of
|
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the United States of America. 2004; 101: 12974-12979</oaf:rawText>
|
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<oaf:id value="dedup_wf_001::63cb67e95305fa461ccff44826ee5a3d" type="openaire"
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confidenceLevel="0.68000335"/>
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<oaf:id value="15322271" type="pmid" confidenceLevel="0.9"/>
|
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<oaf:id value="10.1073/pnas.0405207101" type="doi" confidenceLevel="0.9"/>
|
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</oaf:citation>
|
233
|
<oaf:citation position="7">
|
234
|
<oaf:rawText>Buser, CC, Newcomb, RD, Gaskett, AC, Goddard, MR. Niche construction initiates
|
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the evolution of mutualistic interactions. Ecology Letters. 2014; 17:
|
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1257-1264</oaf:rawText>
|
237
|
<oaf:id value="25041133" type="pmid" confidenceLevel="0.9"/>
|
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<oaf:id value="10.1111/ele.12331" type="doi" confidenceLevel="0.9"/>
|
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</oaf:citation>
|
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<oaf:citation position="8">
|
241
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<oaf:rawText>Chandler, JA, Eisen, JA, Kopp, A. Yeast communities of diverse Drosophila
|
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species: comparison of two symbiont groups in the same hosts. Applied and Environmental
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Microbiology. 2012; 78: 7327-7336</oaf:rawText>
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<oaf:id value="od_______908::9d7dcc6d5a1fd0c29d85b4aa20b98e84" type="openaire"
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confidenceLevel="0.6232886"/>
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<oaf:id value="22885750" type="pmid" confidenceLevel="0.9"/>
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<oaf:id value="10.1128/AEM.01741-12" type="doi" confidenceLevel="0.9"/>
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</oaf:citation>
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<oaf:citation position="9">
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<oaf:rawText>Chandler, JA, Lang, JM, Bhatnagar, S, Eisen, JA, Kopp, A. Bacterial
|
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communities of diverse Drosophila species: ecological context of a host–microbe model
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system. PLoS Genetics. 2011; 7</oaf:rawText>
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<oaf:id value="r37980778c78::c9e861e94903bc8ff837384c570068d0" type="openaire"
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confidenceLevel="0.9"/>
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<oaf:id value="10.1371/journal.pgen.1002272" type="doi" confidenceLevel="0.9"/>
|
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</oaf:citation>
|
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<oaf:citation position="10">
|
258
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<oaf:rawText>Chaston, JM, Newell, PD, Douglas, AE. Metagenome-wide association of microbial
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determinants of host phenotype in Drosophila melanogaster. MBio. 2014; 5</oaf:rawText>
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<oaf:id value="od_______908::99be3aea118d3671cfaa6d23e2885a94" type="openaire"
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confidenceLevel="0.9"/>
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<oaf:id value="10.1128/mBio.01631-14" type="doi" confidenceLevel="0.9"/>
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</oaf:citation>
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<oaf:citation position="11">
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<oaf:rawText>Chavez-Dozal, A, Hogan, D, Gorman, C, Quintanal-Villalonga, A, Nishiguchi, MK.
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Multiple Vibrio fischeri genes are involved in biofilm formation and host colonization.
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FEMS Microbiology Ecology. 2012; 81: 562-573</oaf:rawText>
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<oaf:id value="od_______908::f3a6a9cfd98e2ae9ec3a13743625b2c4" type="openaire"
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confidenceLevel="0.68068427"/>
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<oaf:id value="22486781" type="pmid" confidenceLevel="0.9"/>
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<oaf:id value="10.1111/j.1574-6941.2012.01386.x" type="doi" confidenceLevel="0.9"/>
|
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</oaf:citation>
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<oaf:citation position="12">
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<oaf:rawText>Christiaens, JF, Franco, LM, Cools, TL, De Meester, L, Michiels, J,
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Wenseleers, T, Hassan, BA, Yaksi, E, Verstrepen, KJ. The fungal aroma gene ATF1 promotes
|
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dispersal of yeast cells through insect vectors. Cell Reports. 2014; 9:
|
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425-432</oaf:rawText>
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<oaf:id value="dedup_wf_001::cf891d664f8a8db35ba70e8bbd5aee02" type="openaire"
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confidenceLevel="0.9"/>
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<oaf:id value="25310977" type="pmid" confidenceLevel="0.9"/>
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<oaf:id value="10.1016/j.celrep.2014.09.009" type="doi" confidenceLevel="0.9"/>
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</oaf:citation>
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<oaf:citation position="13">
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<oaf:rawText>Coluccio, AE, Rodriguez, RK, Kernan, MJ, Neiman, AM. The yeast spore wall
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285
|
enables spores to survive passage through the digestive tract of Drosophila. PLoS ONE.
|
286
|
2008; 3</oaf:rawText>
|
287
|
<oaf:id value="dedup_wf_001::a379c66c05a694063cd2182fdd7972fd" type="openaire"
|
288
|
confidenceLevel="0.9"/>
|
289
|
<oaf:id value="10.1371/journal.pone.0002873" type="doi" confidenceLevel="0.9"/>
|
290
|
</oaf:citation>
|
291
|
<oaf:citation position="14">
|
292
|
<oaf:rawText>Corby-Harris, V, Pontaroli, AC, Shimkets, LJ, Bennetzen, JL, Habel, KE,
|
293
|
Promislow, DEL. Geographical distribution and diversity of bacteria associated with
|
294
|
natural populations of Drosophila melanogaster. Applied and Environmental Microbiology.
|
295
|
2007; 73: 3470-3479</oaf:rawText>
|
296
|
<oaf:id value="od_______908::ebeb89667d00e16b0da92ac98d92f40c" type="openaire"
|
297
|
confidenceLevel="0.64758676"/>
|
298
|
<oaf:id value="17400769" type="pmid" confidenceLevel="0.9"/>
|
299
|
<oaf:id value="10.1128/AEM.02120-06" type="doi" confidenceLevel="0.9"/>
|
300
|
</oaf:citation>
|
301
|
<oaf:citation position="15">
|
302
|
<oaf:rawText>Dobzhansky, T, Cooper, DM, Phaff, HJ, Knapp, EP, Carson, HL. Differential
|
303
|
attraction of species of Drosophila to different species of yeasts. Ecology. 1956; 37:
|
304
|
544-550</oaf:rawText>
|
305
|
<oaf:id value="10.2307/1930178" type="doi" confidenceLevel="0.9"/>
|
306
|
</oaf:citation>
|
307
|
<oaf:citation position="16">
|
308
|
<oaf:rawText>Dus, M, Min, S, Keene, AC, Lee, GY, Suh, GSB. Taste-independent detection of
|
309
|
the caloric content of sugar in Drosophila. Proceedings of the National Academy of
|
310
|
Sciences of the United States of America. 2011; 108: 11644-11649</oaf:rawText>
|
311
|
<oaf:id value="od_______908::025898b147d406e862bc81700e0e53b3" type="openaire"
|
312
|
confidenceLevel="0.6379553"/>
|
313
|
<oaf:id value="21709242" type="pmid" confidenceLevel="0.9"/>
|
314
|
<oaf:id value="10.1073/pnas.1017096108" type="doi" confidenceLevel="0.9"/>
|
315
|
</oaf:citation>
|
316
|
<oaf:citation position="17">
|
317
|
<oaf:rawText>Erkosar, B, Leulier, F. Transient adult microbiota, gut homeostasis and
|
318
|
longevity: novel insights from the Drosophila model. FEBS Letters. 2014; 588 (22):
|
319
|
4250-4257</oaf:rawText>
|
320
|
<oaf:id value="24983497" type="pmid" confidenceLevel="0.9"/>
|
321
|
<oaf:id value="10.1016/j.febslet.2014.06.041" type="doi" confidenceLevel="0.9"/>
|
322
|
</oaf:citation>
|
323
|
<oaf:citation position="18">
|
324
|
<oaf:rawText>Gibson, G, Torr, SJ. Visual and olfactory responses of haematophagous Diptera
|
325
|
to host stimuli. Medical and Veterinary Entomology. 1999; 13: 2-23</oaf:rawText>
|
326
|
<oaf:id value="10194745" type="pmid" confidenceLevel="0.9"/>
|
327
|
<oaf:id value="10.1046/j.1365-2915.1999.00163.x" type="doi" confidenceLevel="0.9"/>
|
328
|
</oaf:citation>
|
329
|
<oaf:citation position="19">
|
330
|
<oaf:rawText>Ha, E-M, Lee, K-A, Park, SH, Kim, S-H, Nam, H-J, Lee, H-Y, Kang, D, Lee, W-J.
|
331
|
Regulation of DUOX by the Galphaq-phospholipase Cbeta-Ca2+ pathway in Drosophila gut
|
332
|
immunity. Developmental Cell. 2009; 16: 386-397</oaf:rawText>
|
333
|
<oaf:id value="19289084" type="pmid" confidenceLevel="0.9"/>
|
334
|
<oaf:id value="10.1016/j.devcel.2008.12.015" type="doi" confidenceLevel="0.9"/>
|
335
|
</oaf:citation>
|
336
|
<oaf:citation position="20">
|
337
|
<oaf:rawText>Ha, E-M, Oh, C-T, Ryu, J-H, Bae, Y-S, Kang, S-W, Jang, I-H, Brey, PT, Lee,
|
338
|
W-J. An antioxidant system required for host protection against gut infection in
|
339
|
Drosophila. Developmental Cell. 2005; 8: 125-132</oaf:rawText>
|
340
|
<oaf:id value="15621536" type="pmid" confidenceLevel="0.9"/>
|
341
|
<oaf:id value="10.1016/j.devcel.2004.11.007" type="doi" confidenceLevel="0.9"/>
|
342
|
</oaf:citation>
|
343
|
<oaf:citation position="21">
|
344
|
<oaf:rawText>Hamby, KA, Hernández, A, Boundy-Mills, K, Zalom, FG. Associations of yeasts
|
345
|
with spotted-wing Drosophila (Drosophila suzukii; Diptera: Drosophilidae) in cherries
|
346
|
and raspberries. Applied and Environmental Microbiology. 2012; 78:
|
347
|
4869-4873</oaf:rawText>
|
348
|
<oaf:id value="od_______908::86710588ec29e84f35df4037efbd52d4" type="openaire"
|
349
|
confidenceLevel="0.6633726"/>
|
350
|
<oaf:id value="22582060" type="pmid" confidenceLevel="0.9"/>
|
351
|
<oaf:id value="10.1128/AEM.00841-12" type="doi" confidenceLevel="0.9"/>
|
352
|
</oaf:citation>
|
353
|
<oaf:citation position="22">
|
354
|
<oaf:rawText>Hooper, LV, Macpherson, AJ. Immune adaptations that maintain homeostasis with
|
355
|
the intestinal microbiota. Nature Reviews. Immunology. 2010; 10: 159-169</oaf:rawText>
|
356
|
<oaf:id value="10.1038/nri2710" type="doi" confidenceLevel="0.9"/>
|
357
|
</oaf:citation>
|
358
|
<oaf:citation position="23">
|
359
|
<oaf:rawText>Jamieson, DJ. Saccharomyces cerevisiae has distinct adaptive responses to both
|
360
|
hydrogen peroxide and menadione. Journal of Bacteriology. 1992; 174:
|
361
|
6678-6681</oaf:rawText>
|
362
|
<oaf:id value="od_______908::4617ad0b341af6b61b913500c266a3c7" type="openaire"
|
363
|
confidenceLevel="0.70583826"/>
|
364
|
<oaf:id value="1400218" type="pmid" confidenceLevel="0.9"/>
|
365
|
</oaf:citation>
|
366
|
<oaf:citation position="24">
|
367
|
<oaf:rawText>Kim, JK, Kwon, JY, Kim, SK, Han, SH, Won, YJ, Lee, JH, Kim, C-H, Fukatsu, T,
|
368
|
Lee, BL. Purine biosynthesis, biofilm formation, and persistence of an insect-microbe
|
369
|
gut symbiosis. Applied and Environmental Microbiology. 2014; 80: 4374-4382</oaf:rawText>
|
370
|
<oaf:id value="od_______908::44169f6a1688bed845f2294984d54a50" type="openaire"
|
371
|
confidenceLevel="0.9"/>
|
372
|
<oaf:id value="24814787" type="pmid" confidenceLevel="0.9"/>
|
373
|
<oaf:id value="10.1128/AEM.00739-14" type="doi" confidenceLevel="0.9"/>
|
374
|
</oaf:citation>
|
375
|
<oaf:citation position="25">
|
376
|
<oaf:rawText>Lachance, MA, Starmer, WT, Phaff, HJ. Identification of yeasts found in
|
377
|
decaying cactus tissue. Canadian Journal of Microbiology. 1988; 34:
|
378
|
1025-1036</oaf:rawText>
|
379
|
<oaf:id value="10.1139/m88-181" type="doi" confidenceLevel="0.9"/>
|
380
|
</oaf:citation>
|
381
|
<oaf:citation position="26">
|
382
|
<oaf:rawText>Lemaitre, B, Hoffmann, J. The host defense of Drosophila melanogaster. Annual
|
383
|
Review of Immunology. 2007; 25: 697-743</oaf:rawText>
|
384
|
<oaf:id value="10.1146/annurev.immunol.25.022106.141615" type="doi" confidenceLevel="0.9"/>
|
385
|
</oaf:citation>
|
386
|
<oaf:citation position="27">
|
387
|
<oaf:rawText>Lemaitre, B, Reichhart, JM, Hoffmann, JA. Drosophila host defense:
|
388
|
differential induction of antimicrobial peptide genes after infection by various classes
|
389
|
of microorganisms. Proceedings of the National Academy of Sciences of the United States
|
390
|
of America. 1997; 94: 14614-14619</oaf:rawText>
|
391
|
<oaf:id value="dedup_wf_001::fa88772cba86dc8148e5f0c19f92fa40" type="openaire"
|
392
|
confidenceLevel="0.69187975"/>
|
393
|
<oaf:id value="9405661" type="pmid" confidenceLevel="0.9"/>
|
394
|
<oaf:id value="10.1073/pnas.94.26.14614" type="doi" confidenceLevel="0.9"/>
|
395
|
</oaf:citation>
|
396
|
<oaf:citation position="28">
|
397
|
<oaf:rawText>Leonard, AS, Masek, P. Multisensory integration of colors and scents: insights
|
398
|
from bees and flowers. Journal of Comparative Physiology. 2014; 200:
|
399
|
463-474</oaf:rawText>
|
400
|
<oaf:id value="24710696" type="pmid" confidenceLevel="0.9"/>
|
401
|
<oaf:id value="10.1007/s00359-014-0904-4" type="doi" confidenceLevel="0.9"/>
|
402
|
</oaf:citation>
|
403
|
<oaf:citation position="29">
|
404
|
<oaf:rawText>Ley, RE, Hamady, M, Lozupone, C, Turnbaugh, PJ, Ramey, RR, Bircher, JS,
|
405
|
Schlegel, ML, Tucker, TA, Schrenzel, MD, Knight, R, Gordon, JI. Evolution of mammals and
|
406
|
their gut microbes. Science. 2008; 320: 1647-1651</oaf:rawText>
|
407
|
<oaf:id value="18497261" type="pmid" confidenceLevel="0.9"/>
|
408
|
<oaf:id value="10.1126/science.1155725" type="doi" confidenceLevel="0.9"/>
|
409
|
</oaf:citation>
|
410
|
<oaf:citation position="30">
|
411
|
<oaf:rawText>Lhocine, N, Ribeiro, PS, Buchon, N, Wepf, A, Wilson, R, Tenev, T, Lemaitre, B,
|
412
|
Gstaiger, M, Meier, P, Leulier, F. PIMS modulates immune tolerance by negatively
|
413
|
regulating Drosophila innate immune signaling. Cell Host & Microbe. 2008; 4:
|
414
|
147-158</oaf:rawText>
|
415
|
<oaf:id value="od_______185::e5ddd76ba22f2978df80acb069d9a249" type="openaire"
|
416
|
confidenceLevel="0.64977634"/>
|
417
|
<oaf:id value="18692774" type="pmid" confidenceLevel="0.9"/>
|
418
|
<oaf:id value="10.1016/j.chom.2008.07.004" type="doi" confidenceLevel="0.9"/>
|
419
|
</oaf:citation>
|
420
|
<oaf:citation position="31">
|
421
|
<oaf:rawText>Loeb, J, Northrop, JH. Nutrition and evolution second note. The Journal of
|
422
|
Biological Chemistry. 1916; 27: 309-312</oaf:rawText>
|
423
|
</oaf:citation>
|
424
|
<oaf:citation position="32">
|
425
|
<oaf:rawText>Mathé, L, Van Dijck, P. Recent insights into Candida albicans biofilm
|
426
|
resistance mechanisms. Current Genetics. 2013; 59: 251-264</oaf:rawText>
|
427
|
<oaf:id value="dedup_wf_001::9fa976b4572316ac5eb20dd2eb0fcc4c" type="openaire"
|
428
|
confidenceLevel="0.9"/>
|
429
|
<oaf:id value="23974350" type="pmid" confidenceLevel="0.9"/>
|
430
|
<oaf:id value="10.1007/s00294-013-0400-3" type="doi" confidenceLevel="0.9"/>
|
431
|
</oaf:citation>
|
432
|
<oaf:citation position="33">
|
433
|
<oaf:rawText>McFall-Ngai, M, Hadfield, MG, Bosch, TCG, Carey, HV, Domazet-Lošo, T, Douglas,
|
434
|
AE, Dubilier, N, Eberl, G, Fukami, T, Gilbert, SF, Hentschel, U, King, N, Kjelleberg, S,
|
435
|
Knoll, AH, Kremer, N, Mazmanian, SK, Metcalf, JL, Nealson, K, Pierce, NE, Rawls, JF,
|
436
|
Reid, A, Ruby, EG, Rumpho, M, Sanders, JG, Tautz, D, Wernegreen, JJ. Animals in a
|
437
|
bacterial world, a new imperative for the life sciences. Proceedings of the National
|
438
|
Academy of Sciences of the United States of America. 2013; 110: 3229-3236</oaf:rawText>
|
439
|
<oaf:id value="dedup_wf_001::2eb2a60543d3e79be3bb4cee3c48e4a7" type="openaire"
|
440
|
confidenceLevel="0.9"/>
|
441
|
<oaf:id value="23391737" type="pmid" confidenceLevel="0.9"/>
|
442
|
<oaf:id value="10.1073/pnas.1218525110" type="doi" confidenceLevel="0.9"/>
|
443
|
</oaf:citation>
|
444
|
<oaf:citation position="34">
|
445
|
<oaf:rawText>Moné, Y, Monnin, D, Kremer, N. The oxidative environment: a mediator of
|
446
|
interspecies communication that drives symbiosis evolution. Proceedings of the Royal
|
447
|
Society B: Biological Sciences. 2014; 281: 20133112</oaf:rawText>
|
448
|
<oaf:id value="od_______908::419698d7435f745b1c38dd303dafcb3c" type="openaire"
|
449
|
confidenceLevel="0.686388"/>
|
450
|
<oaf:id value="24807248" type="pmid" confidenceLevel="0.9"/>
|
451
|
<oaf:id value="10.1098/rspb.2013.3112" type="doi" confidenceLevel="0.9"/>
|
452
|
</oaf:citation>
|
453
|
<oaf:citation position="35">
|
454
|
<oaf:rawText>Naumov, GI, James, SA, Naumova, ES, Louis, EJ, Roberts, IN. Three new species
|
455
|
in the Saccharomyces sensu strictu complex: Saccharomyces cariocanus, Saccharomyces
|
456
|
kudriavzevii and Saccharomyces mikatae. International Journal of Systematic and
|
457
|
Evolutionary Microbiology. 2000; 50 (Pt 5): 1931-1942</oaf:rawText>
|
458
|
<oaf:id value="narcis______::c80e1203f0299f7126d1dbc52b102760" type="openaire"
|
459
|
confidenceLevel="0.7803947"/>
|
460
|
<oaf:id value="11034507" type="pmid" confidenceLevel="0.9"/>
|
461
|
</oaf:citation>
|
462
|
<oaf:citation position="36">
|
463
|
<oaf:rawText>Naumov, GI, Naumova, ES, Sancho, ED. Genetic reidentification of Saccharomyces
|
464
|
strains associated with black knot disease of trees in Ontario and Drosophila species in
|
465
|
California. Canadian Journal of Microbiology. 1996; 42: 335-339</oaf:rawText>
|
466
|
<oaf:id value="10.1139/m96-049" type="doi" confidenceLevel="0.9"/>
|
467
|
</oaf:citation>
|
468
|
<oaf:citation position="37">
|
469
|
<oaf:rawText>Newell, PD, Chaston, JM, Wang, Y, Winans, NJ, Sannino, DR, Wong, AC-N, Dobson,
|
470
|
AJ, Kagle, J, Douglas, AE. In vivo function and comparative genomic analyses of the
|
471
|
Drosophila gut microbiota identify candidate symbiosis factors. Frontiers in
|
472
|
Microbiology. 2014; 5: 576</oaf:rawText>
|
473
|
<oaf:id value="25408687" type="pmid" confidenceLevel="0.9"/>
|
474
|
<oaf:id value="10.3389/fmicb.2014.00576" type="doi" confidenceLevel="0.9"/>
|
475
|
</oaf:citation>
|
476
|
<oaf:citation position="38">
|
477
|
<oaf:rawText>Palanca, L, Gaskett, AC, Günther, CS, Newcomb, RD, Goddard, MR. Quantifying
|
478
|
variation in the ability of yeasts to attract Drosophila melanogaster. PLoS ONE. 2013;
|
479
|
8</oaf:rawText>
|
480
|
<oaf:id value="dedup_wf_001::5c0d0d21b2656a45a2d96fc0851a1a13" type="openaire"
|
481
|
confidenceLevel="0.9"/>
|
482
|
<oaf:id value="10.1371/journal.pone.0075332" type="doi" confidenceLevel="0.9"/>
|
483
|
</oaf:citation>
|
484
|
<oaf:citation position="39">
|
485
|
<oaf:rawText>Phaff, HJ, Knapp, EP. The taxonomy of yeasts found in exudates of certain
|
486
|
trees and other natural breeding sites of some species of Drosophila. Antonie van
|
487
|
Leeuwenhoek. 1956; 22: 117-130</oaf:rawText>
|
488
|
<oaf:id value="13340698" type="pmid" confidenceLevel="0.9"/>
|
489
|
<oaf:id value="10.1007/BF02538319" type="doi" confidenceLevel="0.9"/>
|
490
|
</oaf:citation>
|
491
|
<oaf:citation position="40">
|
492
|
<oaf:rawText>Reuter, M, Bell, G, Greig, D. Increased outbreeding in yeast in response to
|
493
|
dispersal by an insect vector. Current Biology. 2007; 17: R81-R83</oaf:rawText>
|
494
|
<oaf:id value="17276903" type="pmid" confidenceLevel="0.9"/>
|
495
|
<oaf:id value="10.1016/j.cub.2006.11.059" type="doi" confidenceLevel="0.9"/>
|
496
|
</oaf:citation>
|
497
|
<oaf:citation position="41">
|
498
|
<oaf:rawText>Ridley, EV, Wong, AC-N, Westmiller, S, Douglas, AE. Impact of the resident
|
499
|
microbiota on the nutritional phenotype of Drosophila melanogaster. PLoS ONE. 2012;
|
500
|
7</oaf:rawText>
|
501
|
<oaf:id value="dedup_wf_001::a4ec70957156e251b1e445e16f430eb0" type="openaire"
|
502
|
confidenceLevel="0.9"/>
|
503
|
<oaf:id value="10.1371/journal.pone.0036765" type="doi" confidenceLevel="0.9"/>
|
504
|
</oaf:citation>
|
505
|
<oaf:citation position="42">
|
506
|
<oaf:rawText>Ryu, J-H, Kim, S-H, Lee, H-Y, Bai, JY, Nam, Y-D, Bae, J-W, Lee, DG, Shin, SC,
|
507
|
Ha, E-M, Lee, W-J. Innate immune homeostasis by the homeobox gene caudal and
|
508
|
commensal-gut mutualism in Drosophila. Science. 2008; 319: 777-782</oaf:rawText>
|
509
|
<oaf:id value="18218863" type="pmid" confidenceLevel="0.9"/>
|
510
|
<oaf:id value="10.1126/science.1149357" type="doi" confidenceLevel="0.9"/>
|
511
|
</oaf:citation>
|
512
|
<oaf:citation position="43">
|
513
|
<oaf:rawText>Schiabor, KM, Quan, AS, Eisen, MB. Saccharomyces cerevisiae mitochondria are
|
514
|
required for optimal attractiveness to Drosophila melanogaster. PLoS ONE. 2014;
|
515
|
9</oaf:rawText>
|
516
|
<oaf:id value="dedup_wf_001::3df0431a33d88e390d454ff080393fa2" type="openaire"
|
517
|
confidenceLevel="0.9"/>
|
518
|
<oaf:id value="10.1371/journal.pone.0113899" type="doi" confidenceLevel="0.9"/>
|
519
|
</oaf:citation>
|
520
|
<oaf:citation position="44">
|
521
|
<oaf:rawText>Sharon, G, Segal, D, Ringo, JM, Hefetz, A, Zilber-Rosenberg, I, Rosenberg, E.
|
522
|
Commensal bacteria play a role in mating preference of Drosophila melanogaster.
|
523
|
Proceedings of the National Academy of Sciences of the United States of America. 2010;
|
524
|
107: 20051-20056</oaf:rawText>
|
525
|
<oaf:id value="21041648" type="pmid" confidenceLevel="0.9"/>
|
526
|
<oaf:id value="10.1073/pnas.1009906107" type="doi" confidenceLevel="0.9"/>
|
527
|
</oaf:citation>
|
528
|
<oaf:citation position="45">
|
529
|
<oaf:rawText>Shihata, A, Mrak, EM. The fate of yeast in the digestive tract of Drosophila.
|
530
|
American Naturalist. 1951; 85 (825): 381-383</oaf:rawText>
|
531
|
<oaf:id value="10.1086/281692" type="doi" confidenceLevel="0.9"/>
|
532
|
</oaf:citation>
|
533
|
<oaf:citation position="46">
|
534
|
<oaf:rawText>Sommer, F, Bäckhed, F. The gut microbiota–masters of host development and
|
535
|
physiology. Nature Reviews. Microbiology. 2013; 11: 227-238</oaf:rawText>
|
536
|
<oaf:id value="webcrawl____::2ce27b24e2212989a7bb67fc5fc5ae15" type="openaire"
|
537
|
confidenceLevel="0.9"/>
|
538
|
<oaf:id value="23435359" type="pmid" confidenceLevel="0.9"/>
|
539
|
<oaf:id value="10.1038/nrmicro2974" type="doi" confidenceLevel="0.9"/>
|
540
|
</oaf:citation>
|
541
|
<oaf:citation position="47">
|
542
|
<oaf:rawText>Stamps, JA, Yang, LH, Morales, VM, Boundy-Mills, KL. Drosophila regulate yeast
|
543
|
density and increase yeast community similarity in a natural substrate. PLoS ONE. 2012;
|
544
|
7</oaf:rawText>
|
545
|
<oaf:id value="r37980778c78::4d4a4d8e345c70ef30cfd51568b820f2" type="openaire"
|
546
|
confidenceLevel="0.9"/>
|
547
|
<oaf:id value="10.1371/journal.pone.0042238" type="doi" confidenceLevel="0.9"/>
|
548
|
</oaf:citation>
|
549
|
<oaf:citation position="48">
|
550
|
<oaf:rawText>Stamps, J, Buechner, M, Alexander, K, Davis, J, Zuniga, N. Genotypic
|
551
|
differences in space use and movement patterns in Drosophila melanogaster. Animal
|
552
|
Behaviour. 2005; 70: 609-618</oaf:rawText>
|
553
|
<oaf:id value="10.1016/j.anbehav.2004.11.018" type="doi" confidenceLevel="0.9"/>
|
554
|
</oaf:citation>
|
555
|
<oaf:citation position="49">
|
556
|
<oaf:rawText>Staubach, F, Baines, JF, Künzel, S, Bik, EM, Petrov, DA. Host species and
|
557
|
environmental effects on bacterial communities associated with Drosophila in the
|
558
|
laboratory and in the natural environment. PLoS ONE. 2013; 8</oaf:rawText>
|
559
|
<oaf:id value="dedup_wf_001::77f9414ad2c34f0ab52ebc30d307f8d7" type="openaire"
|
560
|
confidenceLevel="0.9"/>
|
561
|
<oaf:id value="10.1371/journal.pone.0070749" type="doi" confidenceLevel="0.9"/>
|
562
|
</oaf:citation>
|
563
|
<oaf:citation position="50">
|
564
|
<oaf:rawText>Tanimura, T, Isono, K, Takamura, T, Shimada, I. Genetic dimorphism in the
|
565
|
taste sensitivity to trehalose in Drosophila melanogaster. Journal of Comparative
|
566
|
Physiology. 1982; 147: 433-437</oaf:rawText>
|
567
|
<oaf:id value="10.1007/BF00612007" type="doi" confidenceLevel="0.9"/>
|
568
|
</oaf:citation>
|
569
|
<oaf:citation position="51">
|
570
|
<oaf:rawText>Tremaroli, V, Bäckhed, F. Functional interactions between the gut microbiota
|
571
|
and host metabolism. Nature. 2012; 489: 242-249</oaf:rawText>
|
572
|
<oaf:id value="22972297" type="pmid" confidenceLevel="0.9"/>
|
573
|
<oaf:id value="10.1038/nature11552" type="doi" confidenceLevel="0.9"/>
|
574
|
</oaf:citation>
|
575
|
<oaf:citation position="52">
|
576
|
<oaf:rawText>Weiss, LA, Dahanukar, A, Kwon, JY, Banerjee, D, Carlson, JR. The molecular and
|
577
|
cellular basis of bitter taste in Drosophila. Neuron. 2011; 69: 258-272</oaf:rawText>
|
578
|
<oaf:id value="od_______908::50f656ecc8d0d1b7df945d39cb4cbd22" type="openaire"
|
579
|
confidenceLevel="0.6552524"/>
|
580
|
<oaf:id value="21262465" type="pmid" confidenceLevel="0.9"/>
|
581
|
<oaf:id value="10.1016/j.neuron.2011.01.001" type="doi" confidenceLevel="0.9"/>
|
582
|
</oaf:citation>
|
583
|
<oaf:citation position="53">
|
584
|
<oaf:rawText>Wong, CNA, Ng, P, Douglas, AE. Low-diversity bacterial community in the gut of
|
585
|
the fruitfly Drosophila melanogaster. Environmental Microbiology. 2011; 13:
|
586
|
1889-1900</oaf:rawText>
|
587
|
<oaf:id value="21631690" type="pmid" confidenceLevel="0.9"/>
|
588
|
<oaf:id value="10.1111/j.1462-2920.2011.02511.x" type="doi" confidenceLevel="0.9"/>
|
589
|
</oaf:citation>
|
590
|
<oaf:citation position="54">
|
591
|
<oaf:rawText>Wong, R, Piper, MDW, Blanc, E, Partridge, L. Pitfalls of measuring feeding
|
592
|
rate in the fruit fly Drosophila melanogaster. Nature Methods. 2008; 5:
|
593
|
214-215</oaf:rawText>
|
594
|
<oaf:id value="dedup_wf_001::dec7fa0c3ee01fe609b1c1c66dabeba7" type="openaire"
|
595
|
confidenceLevel="0.9"/>
|
596
|
<oaf:id value="18309307" type="pmid" confidenceLevel="0.9"/>
|
597
|
<oaf:id value="10.1038/nmeth0308-214" type="doi" confidenceLevel="0.9"/>
|
598
|
</oaf:citation>
|
599
|
</oaf:citations>
|
600
|
</oaf:result>
|