Project

General

Profile

1
<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
2
   xmlns:oaf="http://namespace.openaire.eu/oaf"
3
   xsi:schemaLocation="http://namespace.openaire.eu/oaf http://datathon.openaire.eu/datathon-schema/oaf-publication-1.1.xsd">
4
   <oaf:publisher>PeerJ Inc.</oaf:publisher>
5
   <oaf:language code="eng">English</oaf:language>
6
   <oaf:journal issn="2167-8359" eissn="2167-8359" lissn="" ep="" iss="" sp="" vol="3">PeerJ</oaf:journal>
7
   <oaf:description>Yeasts play an important role in the biology of the fruit fly,
8
                    Drosophila melanogaster. In addition to being a valuable source of nutrition,
9
                    yeasts affect D. melanogaster behavior and interact with the host immune system.
10
                    Most experiments investigating the role of yeasts in D. melanogaster biology use
11
                    the baker’s yeast, Saccharomyces cerevisiae. However, S. cerevisiae is rarely
12
                    found with natural populations of D. melanogaster or other Drosophila species.
13
                    Moreover, the strain of S. cerevisiae used most often in D. melanogaster
14
                    experiments is a commercially and industrially important strain that, to the
15
                    best of our knowledge, was not isolated from flies. Since disrupting natural
16
                    host–microbe interactions can have profound effects on host biology, the results
17
                    from D. melanogaster–S. cerevisiae laboratory experiments may not be fully
18
                    representative of host–microbe interactions in nature. In this study, we explore
19
                    the D. melanogaster-yeast relationship using five different strains of yeast
20
                    that were isolated from wild Drosophila populations. Ingested live yeasts have
21
                    variable persistence in the D. melanogaster gastrointestinal tract. For example,
22
                    Hanseniaspora occidentalis persists relative to S. cerevisiae, while
23
                    Brettanomyces naardenensis is removed. Despite these differences in persistence
24
                    relative to S. cerevisiae, we find that all yeasts decrease in total abundance
25
                    over time. Reactive oxygen species (ROS) are an important component of the D.
26
                    melanogaster anti-microbial response and can inhibit S. cerevisiae growth in the
27
                    intestine. To determine if sensitivity to ROS explains the differences in yeast
28
                    persistence, we measured yeast growth in the presence and absence of hydrogen
29
                    peroxide. We find that B. naardenesis is completely inhibited by hydrogen
30
                    peroxide, while H. occidentalis is not, which is consistent with yeast
31
                    sensitivity to ROS affecting persistence within the D. melanogaster
32
                    gastrointestinal tract. We also compared the feeding preference of D.
33
                    melanogaster when given the choice between a naturally associated yeast and S.
34
                    cerevisiae. We do not find a correlation between preferred yeasts and those that
35
                    persist in the intestine. Notably, in no instances is S. cerevisiae preferred
36
                    over the naturally associated strains. Overall, our results show that D.
37
                    melanogaster-yeast interactions are more complex than might be revealed in
38
                    experiments that use only S. cerevisiae. We propose that future research utilize
39
                    other yeasts, and especially those that are naturally associated with
40
                    Drosophila, to more fully understand the role of yeasts in Drosophila biology.
41
                    Since the genetic basis of host–microbe interactions is shared across taxa and
42
                    since many of these genes are initially discovered in D. melanogaster, a more
43
                    realistic fly-yeast model system will benefit our understanding of host–microbe
44
                    interactions throughout the animal kingdom.</oaf:description>
45
   <oaf:resulttitle>Interactions between Drosophila and its natural
46
                    yeast symbionts—Is Saccharomyces cerevisiae a good model for studying the
47
                    fly-yeast relationship?</oaf:resulttitle>
48
   <oaf:resulttype>publication</oaf:resulttype>
49
   <oaf:subject type="keyword">Symbiosis</oaf:subject>
50
   <oaf:subject type="keyword">Yeast</oaf:subject>
51
   <oaf:subject type="keyword">Microbiology</oaf:subject>
52
   <oaf:subject type="keyword">Entomology</oaf:subject>
53
   <oaf:subject type="keyword">Mycology</oaf:subject>
54
   <oaf:subject type="keyword">Ecology</oaf:subject>
55
   <oaf:subject type="keyword">Medicine</oaf:subject>
56
   <oaf:subject type="keyword">Host-microbe
57
                    interactions</oaf:subject>
58
   <oaf:subject type="keyword">Microbiota</oaf:subject>
59
   <oaf:subject type="keyword">R</oaf:subject>
60
   <oaf:subject type="keyword">Baker’s yeast</oaf:subject>
61
   <oaf:subject type="keyword">Drosophila
62
                    melanogaster</oaf:subject>
63
   <oaf:subject type="keyword">Saccharomyces
64
                    cerevisiae</oaf:subject>
65
   <oaf:subject type="keyword">Microbiome</oaf:subject>
66
   <oaf:source>PeerJ, Vol 3, p e1116 (2015)</oaf:source>
67
   <oaf:source>PeerJ</oaf:source>
68
   <oaf:dateofacceptance>2015-08-01</oaf:dateofacceptance>
69
   <oaf:embargoenddate/>
70
   <oaf:pid type="doi">10.7717/peerj.1116</oaf:pid>
71
   <oaf:pid type="pmc">PMC4556146</oaf:pid>
72
   <oaf:originalId>oai:doaj.org/article:8eb1718ccf7843a4a5d9a98c967c68c2</oaf:originalId>
73
   <oaf:originalId>oai:europepmc.org:3535765</oaf:originalId>
74
   <oaf:collectedfrom name="DOAJ-Articles"/>
75
   <oaf:collectedfrom name="Europe PubMed Central"/>
76
   <oaf:bestaccessrights code="OPEN">Open Access</oaf:bestaccessrights>
77
   <oaf:creator rank="2">Artyom Kopp</oaf:creator>
78
   <oaf:creator rank="1">Don Hoang</oaf:creator>
79
   <oaf:creator rank="3">James Angus Chandler</oaf:creator>
80
   <oaf:relationships>
81
      <oaf:relationship semantics="isRelatedTo" provenance="inference">
82
         <oaf:target type="result" id="r37980778c78::c9e861e94903bc8ff837384c570068d0">
83
            <oaf:publisher>Figshare</oaf:publisher>
84
            <oaf:resulttitle>Bacterial Communities of Diverse  Species:
85
                            Ecological Context of a Host–Microbe Model System</oaf:resulttitle>
86
            <oaf:resulttype>dataset</oaf:resulttype>
87
            <oaf:dateofacceptance>2011-01-01</oaf:dateofacceptance>
88
         </oaf:target>
89
      </oaf:relationship>
90
      <oaf:relationship semantics="isRelatedTo" provenance="inference">
91
         <oaf:target type="result" id="r37980778c78::3abf018d4228c4443af8bd7c5fbcaed1">
92
            <oaf:publisher>Figshare</oaf:publisher>
93
            <oaf:resulttitle> mitochondria are required for
94
                            optimal attractiveness to </oaf:resulttitle>
95
            <oaf:resulttype>dataset</oaf:resulttype>
96
            <oaf:dateofacceptance>2014-01-01</oaf:dateofacceptance>
97
         </oaf:target>
98
      </oaf:relationship>
99
      <oaf:relationship semantics="isRelatedTo" provenance="inference">
100
         <oaf:target type="result" id="r37980778c78::4d4a4d8e345c70ef30cfd51568b820f2">
101
            <oaf:publisher>Figshare</oaf:publisher>
102
            <oaf:resulttitle> Regulate Yeast Density and Increase Yeast
103
                            Community Similarity in a Natural Substrate</oaf:resulttitle>
104
            <oaf:resulttype>dataset</oaf:resulttype>
105
            <oaf:dateofacceptance>2012-01-01</oaf:dateofacceptance>
106
         </oaf:target>
107
      </oaf:relationship>
108
      <oaf:relationship semantics="isRelatedTo" provenance="inference">
109
         <oaf:target type="result" id="r37980778c78::58f63958f2c02db0646478a230030587">
110
            <oaf:publisher>Figshare</oaf:publisher>
111
            <oaf:resulttitle>Yeast
112
                            Communities of Diverse Drosophila Species: Comparison of Two Symbiont
113
                            Groups in the Same Hosts</oaf:resulttitle>
114
            <oaf:resulttype>dataset</oaf:resulttype>
115
            <oaf:dateofacceptance>2013-01-01</oaf:dateofacceptance>
116
         </oaf:target>
117
      </oaf:relationship>
118
      <oaf:relationship semantics="isRelatedTo" provenance="inference">
119
         <oaf:target type="result" id="r37980778c78::ad956f8e1257fdd1c21bdf06f40ae6ec">
120
            <oaf:publisher>Figshare</oaf:publisher>
121
            <oaf:resulttitle>Impact
122
                            of the Resident Microbiota on the Nutritional Phenotype of
123
                                </oaf:resulttitle>
124
            <oaf:resulttype>dataset</oaf:resulttype>
125
            <oaf:dateofacceptance>2012-01-01</oaf:dateofacceptance>
126
         </oaf:target>
127
      </oaf:relationship>
128
      <oaf:relationship semantics="isRelatedTo" provenance="inference">
129
         <oaf:target type="result" id="r37980778c78::ba34d48e024dc31218ce5b0d0fb3e97c">
130
            <oaf:publisher>Figshare</oaf:publisher>
131
            <oaf:resulttitle>Quantifying Variation in the Ability of Yeasts to Attract </oaf:resulttitle>
132
            <oaf:resulttype>dataset</oaf:resulttype>
133
            <oaf:dateofacceptance>2013-01-01</oaf:dateofacceptance>
134
         </oaf:target>
135
      </oaf:relationship>
136
      <oaf:relationship semantics="isRelatedTo" provenance="inference">
137
         <oaf:target type="result" id="r37980778c78::87305c2a733558211129d80012e24609">
138
            <oaf:publisher>Figshare</oaf:publisher>
139
            <oaf:resulttitle>Host
140
                            Species and Environmental Effects on Bacterial Communities Associated
141
                            with  in the Laboratory and in the Natural
142
                            Environment</oaf:resulttitle>
143
            <oaf:resulttype>dataset</oaf:resulttype>
144
            <oaf:dateofacceptance>2013-01-01</oaf:dateofacceptance>
145
         </oaf:target>
146
      </oaf:relationship>
147
      <oaf:relationship semantics="isProducedBy" provenance="inference">
148
         <oaf:target type="project" id="nsf_________::8f42432e412bcaa6a85115a79e726438">
149
            <oaf:projecttitle>Convergent evolution of color patterns through changes in different
150
                            genes</oaf:projecttitle>
151
            <oaf:code>1256420</oaf:code>
152
            <oaf:contracttype code="Continuing grant">Continuing grant</oaf:contracttype>
153
            <oaf:funding>
154
               <oaf:funder id="nsf_________::NSF" shortname="NSF" name="National Science Foundation" jurisdiction="US"/>
155
               <oaf:funding_level_0 name="Directorate for Biological Sciences">nsf_________::NSF::BIO/OAD</oaf:funding_level_0>
156
               <oaf:funding_level_1 name="Division of Integrative Organismal Systems">nsf_________::NSF::BIO/OAD::BIO/IOS</oaf:funding_level_1>
157
            </oaf:funding>
158
         </oaf:target>
159
      </oaf:relationship>
160
   </oaf:relationships>
161
   <oaf:instances>
162
      <oaf:instance>
163
         <oaf:hostedby name="Europe PubMed Central"/>
164
         <oaf:accessrights code="OPEN">Open Access</oaf:accessrights>
165
         <oaf:instancetype>Article</oaf:instancetype>
166
         <oaf:webresource>
167
            <oaf:url>http://europepmc.org/articles/PMC4556146</oaf:url>
168
         </oaf:webresource>
169
      </oaf:instance>
170
      <oaf:instance>
171
         <oaf:hostedby name="DOAJ-Articles"/>
172
         <oaf:accessrights code="OPEN">Open Access</oaf:accessrights>
173
         <oaf:instancetype>Article</oaf:instancetype>
174
         <oaf:webresource>
175
            <oaf:url>https://peerj.com/articles/1116/</oaf:url>
176
         </oaf:webresource>
177
         <oaf:webresource>
178
            <oaf:url>https://peerj.com/articles/1116.pdf</oaf:url>
179
         </oaf:webresource>
180
         <oaf:webresource>
181
            <oaf:url>https://doaj.org/toc/2167-8359</oaf:url>
182
         </oaf:webresource>
183
      </oaf:instance>
184
   </oaf:instances>
185
   <oaf:citations provenance="iis::document_referencedDocuments" trust="0.9">
186
      <oaf:citation position="1">
187
         <oaf:rawText>Anagnostou, C, Dorsch, M, Rohlfs, M. Influence of dietary yeasts on Drosophila
188
            melanogaster life-history traits. Entomologia Experimentalis et Applicata. 2010; 136:
189
            1-11</oaf:rawText>
190
         <oaf:id value="10.1111/j.1570-7458.2010.00997.x" type="doi" confidenceLevel="0.9"/>
191
      </oaf:citation>
192
      <oaf:citation position="2">
193
         <oaf:rawText>Blum, JE, Fischer, CN, Miles, J, Handelsman, J. Frequent replenishment
194
            sustains the beneficial microbiome of Drosophila melanogaster. mBio. 2013;
195
            4</oaf:rawText>
196
         <oaf:id value="od_______908::7ab34d4207b9fbde6ebc88b9fed70534" type="openaire"
197
            confidenceLevel="0.9"/>
198
         <oaf:id value="10.1128/mBio.00860-13" type="doi" confidenceLevel="0.9"/>
199
      </oaf:citation>
200
      <oaf:citation position="3">
201
         <oaf:rawText>Boynton, PJ, Greig, D. The ecology and evolution of non-domesticated
202
            Saccharomyces species. Yeast. 2014; 31: 449-462</oaf:rawText>
203
         <oaf:id value="od_______908::f9b7dad2c924b8d04af05f0ade74813e" type="openaire"
204
            confidenceLevel="0.9"/>
205
         <oaf:id value="25242436" type="pmid" confidenceLevel="0.9"/>
206
         <oaf:id value="10.1002/yea.3040" type="doi" confidenceLevel="0.9"/>
207
      </oaf:citation>
208
      <oaf:citation position="4">
209
         <oaf:rawText>Broderick, NA, Lemaitre, B. Gut-associated microbes of Drosophila
210
            melanogaster. Gut Microbes. 2012; 3: 307-321</oaf:rawText>
211
         <oaf:id value="dedup_wf_001::6bd57061dc4f754f0cbad5fb6efe3733" type="openaire"
212
            confidenceLevel="0.9"/>
213
         <oaf:id value="22572876" type="pmid" confidenceLevel="0.9"/>
214
         <oaf:id value="10.4161/gmic.19896" type="doi" confidenceLevel="0.9"/>
215
      </oaf:citation>
216
      <oaf:citation position="5">
217
         <oaf:rawText>Broderick, NA, Buchon, N, Lemaitre, B. Microbiota-induced changes in
218
            Drosophila melanogaster host gene expression and gut morphology. MBio. 2014;
219
            5</oaf:rawText>
220
         <oaf:id value="dedup_wf_001::01b40887523fbaee6fa0acf6ecd01fd9" type="openaire"
221
            confidenceLevel="0.9"/>
222
         <oaf:id value="10.1128/mBio.01117-14" type="doi" confidenceLevel="0.9"/>
223
      </oaf:citation>
224
      <oaf:citation position="6">
225
         <oaf:rawText>Brummel, T, Ching, A, Seroude, L, Simon, AF, Benzer, S. Drosophila lifespan
226
            enhancement by exogenous bacteria. Proceedings of the National Academy of Sciences of
227
            the United States of America. 2004; 101: 12974-12979</oaf:rawText>
228
         <oaf:id value="dedup_wf_001::63cb67e95305fa461ccff44826ee5a3d" type="openaire"
229
            confidenceLevel="0.68000335"/>
230
         <oaf:id value="15322271" type="pmid" confidenceLevel="0.9"/>
231
         <oaf:id value="10.1073/pnas.0405207101" type="doi" confidenceLevel="0.9"/>
232
      </oaf:citation>
233
      <oaf:citation position="7">
234
         <oaf:rawText>Buser, CC, Newcomb, RD, Gaskett, AC, Goddard, MR. Niche construction initiates
235
            the evolution of mutualistic interactions. Ecology Letters. 2014; 17:
236
            1257-1264</oaf:rawText>
237
         <oaf:id value="25041133" type="pmid" confidenceLevel="0.9"/>
238
         <oaf:id value="10.1111/ele.12331" type="doi" confidenceLevel="0.9"/>
239
      </oaf:citation>
240
      <oaf:citation position="8">
241
         <oaf:rawText>Chandler, JA, Eisen, JA, Kopp, A. Yeast communities of diverse Drosophila
242
            species: comparison of two symbiont groups in the same hosts. Applied and Environmental
243
            Microbiology. 2012; 78: 7327-7336</oaf:rawText>
244
         <oaf:id value="od_______908::9d7dcc6d5a1fd0c29d85b4aa20b98e84" type="openaire"
245
            confidenceLevel="0.6232886"/>
246
         <oaf:id value="22885750" type="pmid" confidenceLevel="0.9"/>
247
         <oaf:id value="10.1128/AEM.01741-12" type="doi" confidenceLevel="0.9"/>
248
      </oaf:citation>
249
      <oaf:citation position="9">
250
         <oaf:rawText>Chandler, JA, Lang, JM, Bhatnagar, S, Eisen, JA, Kopp, A. Bacterial
251
            communities of diverse Drosophila species: ecological context of a host–microbe model
252
            system. PLoS Genetics. 2011; 7</oaf:rawText>
253
         <oaf:id value="r37980778c78::c9e861e94903bc8ff837384c570068d0" type="openaire"
254
            confidenceLevel="0.9"/>
255
         <oaf:id value="10.1371/journal.pgen.1002272" type="doi" confidenceLevel="0.9"/>
256
      </oaf:citation>
257
      <oaf:citation position="10">
258
         <oaf:rawText>Chaston, JM, Newell, PD, Douglas, AE. Metagenome-wide association of microbial
259
            determinants of host phenotype in Drosophila melanogaster. MBio. 2014; 5</oaf:rawText>
260
         <oaf:id value="od_______908::99be3aea118d3671cfaa6d23e2885a94" type="openaire"
261
            confidenceLevel="0.9"/>
262
         <oaf:id value="10.1128/mBio.01631-14" type="doi" confidenceLevel="0.9"/>
263
      </oaf:citation>
264
      <oaf:citation position="11">
265
         <oaf:rawText>Chavez-Dozal, A, Hogan, D, Gorman, C, Quintanal-Villalonga, A, Nishiguchi, MK.
266
            Multiple Vibrio fischeri genes are involved in biofilm formation and host colonization.
267
            FEMS Microbiology Ecology. 2012; 81: 562-573</oaf:rawText>
268
         <oaf:id value="od_______908::f3a6a9cfd98e2ae9ec3a13743625b2c4" type="openaire"
269
            confidenceLevel="0.68068427"/>
270
         <oaf:id value="22486781" type="pmid" confidenceLevel="0.9"/>
271
         <oaf:id value="10.1111/j.1574-6941.2012.01386.x" type="doi" confidenceLevel="0.9"/>
272
      </oaf:citation>
273
      <oaf:citation position="12">
274
         <oaf:rawText>Christiaens, JF, Franco, LM, Cools, TL, De Meester, L, Michiels, J,
275
            Wenseleers, T, Hassan, BA, Yaksi, E, Verstrepen, KJ. The fungal aroma gene ATF1 promotes
276
            dispersal of yeast cells through insect vectors. Cell Reports. 2014; 9:
277
            425-432</oaf:rawText>
278
         <oaf:id value="dedup_wf_001::cf891d664f8a8db35ba70e8bbd5aee02" type="openaire"
279
            confidenceLevel="0.9"/>
280
         <oaf:id value="25310977" type="pmid" confidenceLevel="0.9"/>
281
         <oaf:id value="10.1016/j.celrep.2014.09.009" type="doi" confidenceLevel="0.9"/>
282
      </oaf:citation>
283
      <oaf:citation position="13">
284
         <oaf:rawText>Coluccio, AE, Rodriguez, RK, Kernan, MJ, Neiman, AM. The yeast spore wall
285
            enables spores to survive passage through the digestive tract of Drosophila. PLoS ONE.
286
            2008; 3</oaf:rawText>
287
         <oaf:id value="dedup_wf_001::a379c66c05a694063cd2182fdd7972fd" type="openaire"
288
            confidenceLevel="0.9"/>
289
         <oaf:id value="10.1371/journal.pone.0002873" type="doi" confidenceLevel="0.9"/>
290
      </oaf:citation>
291
      <oaf:citation position="14">
292
         <oaf:rawText>Corby-Harris, V, Pontaroli, AC, Shimkets, LJ, Bennetzen, JL, Habel, KE,
293
            Promislow, DEL. Geographical distribution and diversity of bacteria associated with
294
            natural populations of Drosophila melanogaster. Applied and Environmental Microbiology.
295
            2007; 73: 3470-3479</oaf:rawText>
296
         <oaf:id value="od_______908::ebeb89667d00e16b0da92ac98d92f40c" type="openaire"
297
            confidenceLevel="0.64758676"/>
298
         <oaf:id value="17400769" type="pmid" confidenceLevel="0.9"/>
299
         <oaf:id value="10.1128/AEM.02120-06" type="doi" confidenceLevel="0.9"/>
300
      </oaf:citation>
301
      <oaf:citation position="15">
302
         <oaf:rawText>Dobzhansky, T, Cooper, DM, Phaff, HJ, Knapp, EP, Carson, HL. Differential
303
            attraction of species of Drosophila to different species of yeasts. Ecology. 1956; 37:
304
            544-550</oaf:rawText>
305
         <oaf:id value="10.2307/1930178" type="doi" confidenceLevel="0.9"/>
306
      </oaf:citation>
307
      <oaf:citation position="16">
308
         <oaf:rawText>Dus, M, Min, S, Keene, AC, Lee, GY, Suh, GSB. Taste-independent detection of
309
            the caloric content of sugar in Drosophila. Proceedings of the National Academy of
310
            Sciences of the United States of America. 2011; 108: 11644-11649</oaf:rawText>
311
         <oaf:id value="od_______908::025898b147d406e862bc81700e0e53b3" type="openaire"
312
            confidenceLevel="0.6379553"/>
313
         <oaf:id value="21709242" type="pmid" confidenceLevel="0.9"/>
314
         <oaf:id value="10.1073/pnas.1017096108" type="doi" confidenceLevel="0.9"/>
315
      </oaf:citation>
316
      <oaf:citation position="17">
317
         <oaf:rawText>Erkosar, B, Leulier, F. Transient adult microbiota, gut homeostasis and
318
            longevity: novel insights from the Drosophila model. FEBS Letters. 2014; 588 (22):
319
            4250-4257</oaf:rawText>
320
         <oaf:id value="24983497" type="pmid" confidenceLevel="0.9"/>
321
         <oaf:id value="10.1016/j.febslet.2014.06.041" type="doi" confidenceLevel="0.9"/>
322
      </oaf:citation>
323
      <oaf:citation position="18">
324
         <oaf:rawText>Gibson, G, Torr, SJ. Visual and olfactory responses of haematophagous Diptera
325
            to host stimuli. Medical and Veterinary Entomology. 1999; 13: 2-23</oaf:rawText>
326
         <oaf:id value="10194745" type="pmid" confidenceLevel="0.9"/>
327
         <oaf:id value="10.1046/j.1365-2915.1999.00163.x" type="doi" confidenceLevel="0.9"/>
328
      </oaf:citation>
329
      <oaf:citation position="19">
330
         <oaf:rawText>Ha, E-M, Lee, K-A, Park, SH, Kim, S-H, Nam, H-J, Lee, H-Y, Kang, D, Lee, W-J.
331
            Regulation of DUOX by the Galphaq-phospholipase Cbeta-Ca2+ pathway in Drosophila gut
332
            immunity. Developmental Cell. 2009; 16: 386-397</oaf:rawText>
333
         <oaf:id value="19289084" type="pmid" confidenceLevel="0.9"/>
334
         <oaf:id value="10.1016/j.devcel.2008.12.015" type="doi" confidenceLevel="0.9"/>
335
      </oaf:citation>
336
      <oaf:citation position="20">
337
         <oaf:rawText>Ha, E-M, Oh, C-T, Ryu, J-H, Bae, Y-S, Kang, S-W, Jang, I-H, Brey, PT, Lee,
338
            W-J. An antioxidant system required for host protection against gut infection in
339
            Drosophila. Developmental Cell. 2005; 8: 125-132</oaf:rawText>
340
         <oaf:id value="15621536" type="pmid" confidenceLevel="0.9"/>
341
         <oaf:id value="10.1016/j.devcel.2004.11.007" type="doi" confidenceLevel="0.9"/>
342
      </oaf:citation>
343
      <oaf:citation position="21">
344
         <oaf:rawText>Hamby, KA, Hernández, A, Boundy-Mills, K, Zalom, FG. Associations of yeasts
345
            with spotted-wing Drosophila (Drosophila suzukii; Diptera: Drosophilidae) in cherries
346
            and raspberries. Applied and Environmental Microbiology. 2012; 78:
347
            4869-4873</oaf:rawText>
348
         <oaf:id value="od_______908::86710588ec29e84f35df4037efbd52d4" type="openaire"
349
            confidenceLevel="0.6633726"/>
350
         <oaf:id value="22582060" type="pmid" confidenceLevel="0.9"/>
351
         <oaf:id value="10.1128/AEM.00841-12" type="doi" confidenceLevel="0.9"/>
352
      </oaf:citation>
353
      <oaf:citation position="22">
354
         <oaf:rawText>Hooper, LV, Macpherson, AJ. Immune adaptations that maintain homeostasis with
355
            the intestinal microbiota. Nature Reviews. Immunology. 2010; 10: 159-169</oaf:rawText>
356
         <oaf:id value="10.1038/nri2710" type="doi" confidenceLevel="0.9"/>
357
      </oaf:citation>
358
      <oaf:citation position="23">
359
         <oaf:rawText>Jamieson, DJ. Saccharomyces cerevisiae has distinct adaptive responses to both
360
            hydrogen peroxide and menadione. Journal of Bacteriology. 1992; 174:
361
            6678-6681</oaf:rawText>
362
         <oaf:id value="od_______908::4617ad0b341af6b61b913500c266a3c7" type="openaire"
363
            confidenceLevel="0.70583826"/>
364
         <oaf:id value="1400218" type="pmid" confidenceLevel="0.9"/>
365
      </oaf:citation>
366
      <oaf:citation position="24">
367
         <oaf:rawText>Kim, JK, Kwon, JY, Kim, SK, Han, SH, Won, YJ, Lee, JH, Kim, C-H, Fukatsu, T,
368
            Lee, BL. Purine biosynthesis, biofilm formation, and persistence of an insect-microbe
369
            gut symbiosis. Applied and Environmental Microbiology. 2014; 80: 4374-4382</oaf:rawText>
370
         <oaf:id value="od_______908::44169f6a1688bed845f2294984d54a50" type="openaire"
371
            confidenceLevel="0.9"/>
372
         <oaf:id value="24814787" type="pmid" confidenceLevel="0.9"/>
373
         <oaf:id value="10.1128/AEM.00739-14" type="doi" confidenceLevel="0.9"/>
374
      </oaf:citation>
375
      <oaf:citation position="25">
376
         <oaf:rawText>Lachance, MA, Starmer, WT, Phaff, HJ. Identification of yeasts found in
377
            decaying cactus tissue. Canadian Journal of Microbiology. 1988; 34:
378
            1025-1036</oaf:rawText>
379
         <oaf:id value="10.1139/m88-181" type="doi" confidenceLevel="0.9"/>
380
      </oaf:citation>
381
      <oaf:citation position="26">
382
         <oaf:rawText>Lemaitre, B, Hoffmann, J. The host defense of Drosophila melanogaster. Annual
383
            Review of Immunology. 2007; 25: 697-743</oaf:rawText>
384
         <oaf:id value="10.1146/annurev.immunol.25.022106.141615" type="doi" confidenceLevel="0.9"/>
385
      </oaf:citation>
386
      <oaf:citation position="27">
387
         <oaf:rawText>Lemaitre, B, Reichhart, JM, Hoffmann, JA. Drosophila host defense:
388
            differential induction of antimicrobial peptide genes after infection by various classes
389
            of microorganisms. Proceedings of the National Academy of Sciences of the United States
390
            of America. 1997; 94: 14614-14619</oaf:rawText>
391
         <oaf:id value="dedup_wf_001::fa88772cba86dc8148e5f0c19f92fa40" type="openaire"
392
            confidenceLevel="0.69187975"/>
393
         <oaf:id value="9405661" type="pmid" confidenceLevel="0.9"/>
394
         <oaf:id value="10.1073/pnas.94.26.14614" type="doi" confidenceLevel="0.9"/>
395
      </oaf:citation>
396
      <oaf:citation position="28">
397
         <oaf:rawText>Leonard, AS, Masek, P. Multisensory integration of colors and scents: insights
398
            from bees and flowers. Journal of Comparative Physiology. 2014; 200:
399
            463-474</oaf:rawText>
400
         <oaf:id value="24710696" type="pmid" confidenceLevel="0.9"/>
401
         <oaf:id value="10.1007/s00359-014-0904-4" type="doi" confidenceLevel="0.9"/>
402
      </oaf:citation>
403
      <oaf:citation position="29">
404
         <oaf:rawText>Ley, RE, Hamady, M, Lozupone, C, Turnbaugh, PJ, Ramey, RR, Bircher, JS,
405
            Schlegel, ML, Tucker, TA, Schrenzel, MD, Knight, R, Gordon, JI. Evolution of mammals and
406
            their gut microbes. Science. 2008; 320: 1647-1651</oaf:rawText>
407
         <oaf:id value="18497261" type="pmid" confidenceLevel="0.9"/>
408
         <oaf:id value="10.1126/science.1155725" type="doi" confidenceLevel="0.9"/>
409
      </oaf:citation>
410
      <oaf:citation position="30">
411
         <oaf:rawText>Lhocine, N, Ribeiro, PS, Buchon, N, Wepf, A, Wilson, R, Tenev, T, Lemaitre, B,
412
            Gstaiger, M, Meier, P, Leulier, F. PIMS modulates immune tolerance by negatively
413
            regulating Drosophila innate immune signaling. Cell Host &amp; Microbe. 2008; 4:
414
            147-158</oaf:rawText>
415
         <oaf:id value="od_______185::e5ddd76ba22f2978df80acb069d9a249" type="openaire"
416
            confidenceLevel="0.64977634"/>
417
         <oaf:id value="18692774" type="pmid" confidenceLevel="0.9"/>
418
         <oaf:id value="10.1016/j.chom.2008.07.004" type="doi" confidenceLevel="0.9"/>
419
      </oaf:citation>
420
      <oaf:citation position="31">
421
         <oaf:rawText>Loeb, J, Northrop, JH. Nutrition and evolution second note. The Journal of
422
            Biological Chemistry. 1916; 27: 309-312</oaf:rawText>
423
      </oaf:citation>
424
      <oaf:citation position="32">
425
         <oaf:rawText>Mathé, L, Van Dijck, P. Recent insights into Candida albicans biofilm
426
            resistance mechanisms. Current Genetics. 2013; 59: 251-264</oaf:rawText>
427
         <oaf:id value="dedup_wf_001::9fa976b4572316ac5eb20dd2eb0fcc4c" type="openaire"
428
            confidenceLevel="0.9"/>
429
         <oaf:id value="23974350" type="pmid" confidenceLevel="0.9"/>
430
         <oaf:id value="10.1007/s00294-013-0400-3" type="doi" confidenceLevel="0.9"/>
431
      </oaf:citation>
432
      <oaf:citation position="33">
433
         <oaf:rawText>McFall-Ngai, M, Hadfield, MG, Bosch, TCG, Carey, HV, Domazet-Lošo, T, Douglas,
434
            AE, Dubilier, N, Eberl, G, Fukami, T, Gilbert, SF, Hentschel, U, King, N, Kjelleberg, S,
435
            Knoll, AH, Kremer, N, Mazmanian, SK, Metcalf, JL, Nealson, K, Pierce, NE, Rawls, JF,
436
            Reid, A, Ruby, EG, Rumpho, M, Sanders, JG, Tautz, D, Wernegreen, JJ. Animals in a
437
            bacterial world, a new imperative for the life sciences. Proceedings of the National
438
            Academy of Sciences of the United States of America. 2013; 110: 3229-3236</oaf:rawText>
439
         <oaf:id value="dedup_wf_001::2eb2a60543d3e79be3bb4cee3c48e4a7" type="openaire"
440
            confidenceLevel="0.9"/>
441
         <oaf:id value="23391737" type="pmid" confidenceLevel="0.9"/>
442
         <oaf:id value="10.1073/pnas.1218525110" type="doi" confidenceLevel="0.9"/>
443
      </oaf:citation>
444
      <oaf:citation position="34">
445
         <oaf:rawText>Moné, Y, Monnin, D, Kremer, N. The oxidative environment: a mediator of
446
            interspecies communication that drives symbiosis evolution. Proceedings of the Royal
447
            Society B: Biological Sciences. 2014; 281: 20133112</oaf:rawText>
448
         <oaf:id value="od_______908::419698d7435f745b1c38dd303dafcb3c" type="openaire"
449
            confidenceLevel="0.686388"/>
450
         <oaf:id value="24807248" type="pmid" confidenceLevel="0.9"/>
451
         <oaf:id value="10.1098/rspb.2013.3112" type="doi" confidenceLevel="0.9"/>
452
      </oaf:citation>
453
      <oaf:citation position="35">
454
         <oaf:rawText>Naumov, GI, James, SA, Naumova, ES, Louis, EJ, Roberts, IN. Three new species
455
            in the Saccharomyces sensu strictu complex: Saccharomyces cariocanus, Saccharomyces
456
            kudriavzevii and Saccharomyces mikatae. International Journal of Systematic and
457
            Evolutionary Microbiology. 2000; 50 (Pt 5): 1931-1942</oaf:rawText>
458
         <oaf:id value="narcis______::c80e1203f0299f7126d1dbc52b102760" type="openaire"
459
            confidenceLevel="0.7803947"/>
460
         <oaf:id value="11034507" type="pmid" confidenceLevel="0.9"/>
461
      </oaf:citation>
462
      <oaf:citation position="36">
463
         <oaf:rawText>Naumov, GI, Naumova, ES, Sancho, ED. Genetic reidentification of Saccharomyces
464
            strains associated with black knot disease of trees in Ontario and Drosophila species in
465
            California. Canadian Journal of Microbiology. 1996; 42: 335-339</oaf:rawText>
466
         <oaf:id value="10.1139/m96-049" type="doi" confidenceLevel="0.9"/>
467
      </oaf:citation>
468
      <oaf:citation position="37">
469
         <oaf:rawText>Newell, PD, Chaston, JM, Wang, Y, Winans, NJ, Sannino, DR, Wong, AC-N, Dobson,
470
            AJ, Kagle, J, Douglas, AE. In vivo function and comparative genomic analyses of the
471
            Drosophila gut microbiota identify candidate symbiosis factors. Frontiers in
472
            Microbiology. 2014; 5: 576</oaf:rawText>
473
         <oaf:id value="25408687" type="pmid" confidenceLevel="0.9"/>
474
         <oaf:id value="10.3389/fmicb.2014.00576" type="doi" confidenceLevel="0.9"/>
475
      </oaf:citation>
476
      <oaf:citation position="38">
477
         <oaf:rawText>Palanca, L, Gaskett, AC, Günther, CS, Newcomb, RD, Goddard, MR. Quantifying
478
            variation in the ability of yeasts to attract Drosophila melanogaster. PLoS ONE. 2013;
479
            8</oaf:rawText>
480
         <oaf:id value="dedup_wf_001::5c0d0d21b2656a45a2d96fc0851a1a13" type="openaire"
481
            confidenceLevel="0.9"/>
482
         <oaf:id value="10.1371/journal.pone.0075332" type="doi" confidenceLevel="0.9"/>
483
      </oaf:citation>
484
      <oaf:citation position="39">
485
         <oaf:rawText>Phaff, HJ, Knapp, EP. The taxonomy of yeasts found in exudates of certain
486
            trees and other natural breeding sites of some species of Drosophila. Antonie van
487
            Leeuwenhoek. 1956; 22: 117-130</oaf:rawText>
488
         <oaf:id value="13340698" type="pmid" confidenceLevel="0.9"/>
489
         <oaf:id value="10.1007/BF02538319" type="doi" confidenceLevel="0.9"/>
490
      </oaf:citation>
491
      <oaf:citation position="40">
492
         <oaf:rawText>Reuter, M, Bell, G, Greig, D. Increased outbreeding in yeast in response to
493
            dispersal by an insect vector. Current Biology. 2007; 17: R81-R83</oaf:rawText>
494
         <oaf:id value="17276903" type="pmid" confidenceLevel="0.9"/>
495
         <oaf:id value="10.1016/j.cub.2006.11.059" type="doi" confidenceLevel="0.9"/>
496
      </oaf:citation>
497
      <oaf:citation position="41">
498
         <oaf:rawText>Ridley, EV, Wong, AC-N, Westmiller, S, Douglas, AE. Impact of the resident
499
            microbiota on the nutritional phenotype of Drosophila melanogaster. PLoS ONE. 2012;
500
            7</oaf:rawText>
501
         <oaf:id value="dedup_wf_001::a4ec70957156e251b1e445e16f430eb0" type="openaire"
502
            confidenceLevel="0.9"/>
503
         <oaf:id value="10.1371/journal.pone.0036765" type="doi" confidenceLevel="0.9"/>
504
      </oaf:citation>
505
      <oaf:citation position="42">
506
         <oaf:rawText>Ryu, J-H, Kim, S-H, Lee, H-Y, Bai, JY, Nam, Y-D, Bae, J-W, Lee, DG, Shin, SC,
507
            Ha, E-M, Lee, W-J. Innate immune homeostasis by the homeobox gene caudal and
508
            commensal-gut mutualism in Drosophila. Science. 2008; 319: 777-782</oaf:rawText>
509
         <oaf:id value="18218863" type="pmid" confidenceLevel="0.9"/>
510
         <oaf:id value="10.1126/science.1149357" type="doi" confidenceLevel="0.9"/>
511
      </oaf:citation>
512
      <oaf:citation position="43">
513
         <oaf:rawText>Schiabor, KM, Quan, AS, Eisen, MB. Saccharomyces cerevisiae mitochondria are
514
            required for optimal attractiveness to Drosophila melanogaster. PLoS ONE. 2014;
515
            9</oaf:rawText>
516
         <oaf:id value="dedup_wf_001::3df0431a33d88e390d454ff080393fa2" type="openaire"
517
            confidenceLevel="0.9"/>
518
         <oaf:id value="10.1371/journal.pone.0113899" type="doi" confidenceLevel="0.9"/>
519
      </oaf:citation>
520
      <oaf:citation position="44">
521
         <oaf:rawText>Sharon, G, Segal, D, Ringo, JM, Hefetz, A, Zilber-Rosenberg, I, Rosenberg, E.
522
            Commensal bacteria play a role in mating preference of Drosophila melanogaster.
523
            Proceedings of the National Academy of Sciences of the United States of America. 2010;
524
            107: 20051-20056</oaf:rawText>
525
         <oaf:id value="21041648" type="pmid" confidenceLevel="0.9"/>
526
         <oaf:id value="10.1073/pnas.1009906107" type="doi" confidenceLevel="0.9"/>
527
      </oaf:citation>
528
      <oaf:citation position="45">
529
         <oaf:rawText>Shihata, A, Mrak, EM. The fate of yeast in the digestive tract of Drosophila.
530
            American Naturalist. 1951; 85 (825): 381-383</oaf:rawText>
531
         <oaf:id value="10.1086/281692" type="doi" confidenceLevel="0.9"/>
532
      </oaf:citation>
533
      <oaf:citation position="46">
534
         <oaf:rawText>Sommer, F, Bäckhed, F. The gut microbiota–masters of host development and
535
            physiology. Nature Reviews. Microbiology. 2013; 11: 227-238</oaf:rawText>
536
         <oaf:id value="webcrawl____::2ce27b24e2212989a7bb67fc5fc5ae15" type="openaire"
537
            confidenceLevel="0.9"/>
538
         <oaf:id value="23435359" type="pmid" confidenceLevel="0.9"/>
539
         <oaf:id value="10.1038/nrmicro2974" type="doi" confidenceLevel="0.9"/>
540
      </oaf:citation>
541
      <oaf:citation position="47">
542
         <oaf:rawText>Stamps, JA, Yang, LH, Morales, VM, Boundy-Mills, KL. Drosophila regulate yeast
543
            density and increase yeast community similarity in a natural substrate. PLoS ONE. 2012;
544
            7</oaf:rawText>
545
         <oaf:id value="r37980778c78::4d4a4d8e345c70ef30cfd51568b820f2" type="openaire"
546
            confidenceLevel="0.9"/>
547
         <oaf:id value="10.1371/journal.pone.0042238" type="doi" confidenceLevel="0.9"/>
548
      </oaf:citation>
549
      <oaf:citation position="48">
550
         <oaf:rawText>Stamps, J, Buechner, M, Alexander, K, Davis, J, Zuniga, N. Genotypic
551
            differences in space use and movement patterns in Drosophila melanogaster. Animal
552
            Behaviour. 2005; 70: 609-618</oaf:rawText>
553
         <oaf:id value="10.1016/j.anbehav.2004.11.018" type="doi" confidenceLevel="0.9"/>
554
      </oaf:citation>
555
      <oaf:citation position="49">
556
         <oaf:rawText>Staubach, F, Baines, JF, Künzel, S, Bik, EM, Petrov, DA. Host species and
557
            environmental effects on bacterial communities associated with Drosophila in the
558
            laboratory and in the natural environment. PLoS ONE. 2013; 8</oaf:rawText>
559
         <oaf:id value="dedup_wf_001::77f9414ad2c34f0ab52ebc30d307f8d7" type="openaire"
560
            confidenceLevel="0.9"/>
561
         <oaf:id value="10.1371/journal.pone.0070749" type="doi" confidenceLevel="0.9"/>
562
      </oaf:citation>
563
      <oaf:citation position="50">
564
         <oaf:rawText>Tanimura, T, Isono, K, Takamura, T, Shimada, I. Genetic dimorphism in the
565
            taste sensitivity to trehalose in Drosophila melanogaster. Journal of Comparative
566
            Physiology. 1982; 147: 433-437</oaf:rawText>
567
         <oaf:id value="10.1007/BF00612007" type="doi" confidenceLevel="0.9"/>
568
      </oaf:citation>
569
      <oaf:citation position="51">
570
         <oaf:rawText>Tremaroli, V, Bäckhed, F. Functional interactions between the gut microbiota
571
            and host metabolism. Nature. 2012; 489: 242-249</oaf:rawText>
572
         <oaf:id value="22972297" type="pmid" confidenceLevel="0.9"/>
573
         <oaf:id value="10.1038/nature11552" type="doi" confidenceLevel="0.9"/>
574
      </oaf:citation>
575
      <oaf:citation position="52">
576
         <oaf:rawText>Weiss, LA, Dahanukar, A, Kwon, JY, Banerjee, D, Carlson, JR. The molecular and
577
            cellular basis of bitter taste in Drosophila. Neuron. 2011; 69: 258-272</oaf:rawText>
578
         <oaf:id value="od_______908::50f656ecc8d0d1b7df945d39cb4cbd22" type="openaire"
579
            confidenceLevel="0.6552524"/>
580
         <oaf:id value="21262465" type="pmid" confidenceLevel="0.9"/>
581
         <oaf:id value="10.1016/j.neuron.2011.01.001" type="doi" confidenceLevel="0.9"/>
582
      </oaf:citation>
583
      <oaf:citation position="53">
584
         <oaf:rawText>Wong, CNA, Ng, P, Douglas, AE. Low-diversity bacterial community in the gut of
585
            the fruitfly Drosophila melanogaster. Environmental Microbiology. 2011; 13:
586
            1889-1900</oaf:rawText>
587
         <oaf:id value="21631690" type="pmid" confidenceLevel="0.9"/>
588
         <oaf:id value="10.1111/j.1462-2920.2011.02511.x" type="doi" confidenceLevel="0.9"/>
589
      </oaf:citation>
590
      <oaf:citation position="54">
591
         <oaf:rawText>Wong, R, Piper, MDW, Blanc, E, Partridge, L. Pitfalls of measuring feeding
592
            rate in the fruit fly Drosophila melanogaster. Nature Methods. 2008; 5:
593
            214-215</oaf:rawText>
594
         <oaf:id value="dedup_wf_001::dec7fa0c3ee01fe609b1c1c66dabeba7" type="openaire"
595
            confidenceLevel="0.9"/>
596
         <oaf:id value="18309307" type="pmid" confidenceLevel="0.9"/>
597
         <oaf:id value="10.1038/nmeth0308-214" type="doi" confidenceLevel="0.9"/>
598
      </oaf:citation>
599
   </oaf:citations>
600
</oaf:result>
(8-8/9)