Revision 53323
Added by Alessia Bardi over 5 years ago
| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/oaf-publication-1.1.xsd | ||
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<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" elementFormDefault="qualified" |
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xmlns="http://namespace.openaire.eu/oaf" targetNamespace="http://namespace.openaire.eu/oaf" |
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xmlns:vc="http://www.w3.org/2007/XMLSchema-versioning" vc:minVersion="1.1"> |
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<xs:annotation> |
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<xs:documentation>This schema describes elements and properties of literature results (aka publications)</xs:documentation> |
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</xs:annotation> |
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<xs:include schemaLocation="oaf-common-1.1.xsd"/> |
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<xs:element name="result"> |
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<xs:complexType> |
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<xs:sequence> |
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<xs:choice maxOccurs="unbounded"> |
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<xs:element name="resulttitle" type="xs:string"/> |
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<xs:element name="creator" type="creatorType"/> |
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<xs:element name="dateofacceptance" type="xs:string"> |
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<xs:annotation> |
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<xs:documentation> Date of acceptance or publication of the literature result. The type is string because some values from some repositories cannot be properly transformed in dates.</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="publisher" type="xs:string"/> |
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<xs:element name="description" type="xs:string"/> |
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<xs:element name="pid" type="typedElementType"> |
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<xs:annotation> |
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<xs:documentation> Persistent identifier. <p>For allowed pid systems check codes in: $vocabulariesURL$/dnet:pid_types </p></xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="language" type="controlledElementType"> |
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<xs:annotation> |
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<xs:documentation> Language in ISO 639-2.</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="subject" type="typedElementType"> |
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<xs:annotation> |
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<xs:documentation>Subject/topic of the publication. <p>For allowed subject schemes check codes in: $vocabulariesURL$/dnet:subject_classification_typologies </p></xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="resulttype" type="xs:string" fixed="publication"/> |
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<xs:element name="journal" type="journalType"/> |
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<xs:element name="source" type="xs:string"> |
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<xs:annotation> |
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<xs:documentation> The semantics of this field is inherited from dc:source in Dublin Core. More details in https://guidelines.openaire.eu/en/latest/literature/field_source.html</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="embargoenddate" type="xs:string"> |
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<xs:annotation> |
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<xs:documentation>If the access rights is EMBARGO, this field contains the date of the end of embargo (if available), as a string.</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="originalId" type="xs:string" > |
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<xs:annotation> |
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<xs:documentation>Identifier used by the metadata provider from which the record has been collected.</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="collectedfrom" type="namedElementType"> |
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<xs:annotation> |
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<xs:documentation>Identifier and name of the datasource from which this |
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publication metadata record has been collected from. </xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="bestaccessrights" type="controlledElementType"> |
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<xs:annotation> |
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<xs:documentation> The "best" (i.e. openest) access rights available for this publication among the |
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available access rights of its instances. <p>For allowed values |
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check: $vocabulariesURL$/dnet:access_modes </p> |
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</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="community" type="communityType"> |
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<xs:annotation> |
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<xs:documentation>Research community for which this publication is relevant.</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="relationships" type="relsType"> |
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<xs:annotation> |
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<xs:documentation>Relationships to other entities. </xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="instances" type="instancesType" > |
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<xs:annotation> |
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<xs:documentation>One instance is a manifestation of the described publication (e.g. a pre-print version, the publisher's version)</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="externalreference" type="externalreferenceType"> |
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<xs:annotation> |
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<xs:documentation>References to external entities like entries from the Protein Data Bank and links to github. See the type definition for more details.</xs:documentation> |
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</xs:annotation> |
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</xs:element> |
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<xs:element name="citations" type="citationsType" /> |
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</xs:choice> |
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</xs:sequence> |
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</xs:complexType> |
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</xs:element> |
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<xs:complexType name="citationsType"> |
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<xs:sequence> |
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<xs:element name="citation" maxOccurs="unbounded" minOccurs="0"> |
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<xs:complexType> |
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<xs:sequence> |
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<xs:element name="rawText"/> |
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<xs:element name="id" minOccurs="0" maxOccurs="unbounded"> |
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<xs:complexType> |
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<xs:attribute name="value"/> |
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<xs:attribute name="type"/> |
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<xs:attribute name="confidenceLevel"/> |
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</xs:complexType> |
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</xs:element> |
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</xs:sequence> |
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<xs:attribute name="position" type="xs:integer"/> |
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</xs:complexType> |
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</xs:element> |
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</xs:sequence> |
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<xs:attribute name="provenance" type="xs:string"/> |
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<xs:attribute name="trust" type="xs:string"/> |
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</xs:complexType> |
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<xs:complexType name="journalType"> |
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<xs:annotation> |
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<xs:documentation>Journal where the publication has been published. Attributes refer to |
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electronic, printed and linking (ISSN-L) ISSN. This field is applicable when |
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resulttype is "publication". </xs:documentation> |
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</xs:annotation> |
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<xs:simpleContent> |
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<xs:extension base="xs:string"> |
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<xs:attribute name="eissn" use="optional"/> |
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<xs:attribute name="issn" use="optional"/> |
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<xs:attribute name="lissn" use="optional"/> |
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<xs:attribute name="ep" use="optional"/> |
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<xs:attribute name="iss" use="optional"/> |
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<xs:attribute name="sp" use="optional"/> |
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<xs:attribute name="vol" use="optional"/> |
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</xs:extension> |
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</xs:simpleContent> |
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</xs:complexType> |
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</xs:schema> |
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| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/full_samples/project-1.1.xml | ||
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<oaf:project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
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xmlns:oaf="http://namespace.openaire.eu/oaf" |
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xsi:schemaLocation="http://namespace.openaire.eu/oaf ../oaf-project-1.1.xsd"> |
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<oaf:code>643366</oaf:code> |
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<oaf:acronym>EENLondon H2020</oaf:acronym> |
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<oaf:title>Establishing services enhancing the innovation management capacity of SME's in the Enterprise Europe Network- London</oaf:title> |
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<oaf:startdate>2014-09-01</oaf:startdate> |
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<oaf:enddate>2015-01-01</oaf:enddate> |
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<oaf:callidentifier>H2020-Adhoc-2014-20</oaf:callidentifier> |
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<oaf:oamandatepublications>true</oaf:oamandatepublications> |
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<oaf:oamandatedatasets>true</oaf:oamandatedatasets> |
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<oaf:contracttype code="CSA">Coordination and support action</oaf:contracttype> |
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<oaf:funding> |
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<oaf:funder id="ec__________::EC" shortname="EC" name="European Commission" jurisdiction="EU"/> |
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<oaf:funding_level_0 name="H2020">ec__________::EC::H2020 </oaf:funding_level_0> |
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</oaf:funding> |
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<oaf:originalId>corda__h2020::643366</oaf:originalId> |
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<oaf:collectedfrom name="CORDA - COmmon Research DAta Warehouse - Horizon 2020" |
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id="openaire____::a55eb91348674d853191f4f4fd73d078"/> |
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<oaf:rels> |
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<oaf:rel inferred="false" |
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provenance="UNKNOWN" semantics="hasContact"> |
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<oaf:target type="person" id="corda__h2020::4777d1e9a63ceb718053e748666ffb6b"> |
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<oaf:fullname>MCGRAIL, Donal</oaf:fullname> |
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</oaf:target> |
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</oaf:rel> |
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<oaf:rel inferred="true" |
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provenance="sysimport:crosswalk:entityregistry" semantics="hasParticipant"> |
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<oaf:target type="organization" id="dedup_wf_001::c35b7861ede3a6216b7efbf71dfcbbfd"> |
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<oaf:legalshortname>Greater London Enterprise Limited</oaf:legalshortname> |
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<oaf:legalname>Greater London Enterprise Limited</oaf:legalname> |
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<oaf:websiteurl>http://www.gle.co.uk/</oaf:websiteurl> |
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<oaf:country code="UK">United Kingdom</oaf:country> |
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</oaf:target> |
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</oaf:rel> |
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</oaf:rels> |
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</oaf:project> |
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|
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| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/full_samples/dataset1-1.1.xml | ||
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<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
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xmlns:oaf="http://namespace.openaire.eu/oaf" |
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xsi:schemaLocation="http://namespace.openaire.eu/oaf ../oaf-dataset-1.1.xsd"> |
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<oaf:title>The Psychosocial Problems Of Pulmonary Tuberculosis |
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Patients Undergoing DOTS Therapy (Direct Observed Treatment Short Course Therapy) in |
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Selected Areas of Jalandhar District, Punjab.</oaf:title> |
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<oaf:dateofacceptance>2014-01-01</oaf:dateofacceptance> |
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<oaf:publisher>Figshare</oaf:publisher> |
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<oaf:resulttype>dataset</oaf:resulttype> |
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<oaf:language code="und">Undetermined</oaf:language> |
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<oaf:size/> |
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<oaf:format/> |
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<oaf:version/> |
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<oaf:subject type=""/> |
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<oaf:description/> |
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<oaf:embargoenddate/> |
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<oaf:resourcetype/> |
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<oaf:device/> |
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<oaf:originalId/> |
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<oaf:collectedfrom name="Datacite" id="openaire____::9e3be59865b2c1c335d32dae2fe7b254"/> |
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<oaf:pid type=""/> |
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<oaf:rels> |
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<oaf:rel inferred="false" provenance="sysimport:mining:repository" semantics="hasAuthor"> |
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<oaf:target type="person" id="datacite____::6931f6d13e2a0410e898e08be9e53966"> |
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<oaf:ranking>2</oaf:ranking> |
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<oaf:fullname>Veena Williams and Dr. Harbans Kaur</oaf:fullname> |
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</oaf:target> |
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</oaf:rel> |
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|
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<oaf:rel inferred="true" provenance="iis" semantics="isRelatedTo"> |
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<oaf:target type="result" id="dedup_wf_001::21927da64a2f3d56cfdc4bd8bb9554c7"> |
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<oaf:resulttitle>Psychiatric Morbidity and Other Factors |
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Affecting Treatment Adherence in Pulmonary Tuberculosis Patients</oaf:resulttitle> |
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<oaf:dateofacceptance>2013-01-01</oaf:dateofacceptance> |
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<oaf:publisher>Hindawi Publishing Corporation</oaf:publisher> |
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<oaf:resulttype>publication</oaf:resulttype> |
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</oaf:target> |
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</oaf:rel> |
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</oaf:rels> |
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<oaf:instances> |
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<oaf:instance> |
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<oaf:instancetype>Dataset</oaf:instancetype> |
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<oaf:hostedby name="Unknown Repository" |
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id="openaire____::55045bd2a65019fd8e6741a755395c8c"/> |
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<oaf:webresource> |
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<oaf:url>http://dx.doi.org/10.6084/M9.FIGSHARE.1134410</oaf:url> |
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</oaf:webresource> |
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</oaf:instance> |
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</oaf:instances> |
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</oaf:result> |
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|
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| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/full_samples/dataset2-1.1.xml | ||
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<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
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xmlns:oaf="http://namespace.openaire.eu/oaf" |
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xsi:schemaLocation="http://namespace.openaire.eu/oaf ../oaf-dataset-1.1.xsd"> |
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<oaf:title>Meteorological measurements in the upper air at station |
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Pune, 1938-12-31 - 1942-03-31, ERA-CLIM ID 5465</oaf:title> |
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<oaf:dateofacceptance>2014-01-01</oaf:dateofacceptance> |
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<oaf:publisher>PANGAEA</oaf:publisher> |
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<oaf:resulttype>dataset</oaf:resulttype> |
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<oaf:language code="und">Undetermined</oaf:language> |
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<oaf:size/> |
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<oaf:format/> |
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<oaf:version/> |
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| 13 |
<oaf:subject type=""/> |
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|
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<oaf:description/> |
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<oaf:embargoenddate/> |
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|
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<oaf:resourcetype/> |
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<oaf:device/> |
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|
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<oaf:originalId>10.1594/PANGAEA.822742</oaf:originalId> |
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| 22 |
<oaf:collectedfrom name="PANGAEA" id="re3data_____::9633d1e8c4309c833c2c442abeb0cfeb"/> |
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| 23 |
<oaf:pid type=""/> |
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| 24 |
<oaf:rels> |
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| 25 |
<oaf:rel inferred="false" |
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| 26 |
provenance="sysimport:crosswalk:repository" semantics="hasAuthor"> |
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| 27 |
<oaf:target type="person" id="r39633d1e8c4::7a839450481f3732d0793dfda849458e"> |
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| 28 |
<oaf:ranking>1</oaf:ranking> |
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| 29 |
<oaf:fullname>India Meteorological Department</oaf:fullname> |
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| 30 |
</oaf:target> |
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| 31 |
</oaf:rel> |
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| 32 |
<oaf:rel inferred="true" semantics="isProducedBy" |
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provenance="sysimport:crosswalk:repository"> |
|
| 34 |
<oaf:target type="project" id="corda_______::227ed4d9a31899e1fccdc6cddbc0df40"> |
|
| 35 |
<oaf:code>600927</oaf:code> |
|
| 36 |
<oaf:acronym>SCALEQIT</oaf:acronym> |
|
| 37 |
<oaf:projecttitle>Scalable Superconducting Processors for Entangled Quantum Information |
|
| 38 |
Technology</oaf:projecttitle> |
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| 39 |
<oaf:contracttype code="CP">Collaborative project</oaf:contracttype> |
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| 40 |
<oaf:funding> |
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| 41 |
<oaf:funder id="ec__________::EC" |
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| 42 |
shortname="EC" |
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| 43 |
name="European Commission" |
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| 44 |
jurisdiction="EU"/> |
|
| 45 |
<oaf:funding_level_0 name="FP7">ec__________::EC::FP7</oaf:funding_level_0> |
|
| 46 |
<oaf:funding_level_1 name="SP1">ec__________::EC::FP7::SP1</oaf:funding_level_1> |
|
| 47 |
<oaf:funding_level_2 name="ICT">ec__________::EC::FP7::SP1::ICT</oaf:funding_level_2> |
|
| 48 |
</oaf:funding> |
|
| 49 |
</oaf:target> |
|
| 50 |
</oaf:rel> |
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| 51 |
</oaf:rels> |
|
| 52 |
<oaf:instances> |
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| 53 |
<oaf:instance> |
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| 54 |
<oaf:instancetype>Dataset</oaf:instancetype> |
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| 55 |
<oaf:hostedby name="PANGAEA" id="re3data_____::9633d1e8c4309c833c2c442abeb0cfeb"/> |
|
| 56 |
<oaf:webresource> |
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| 57 |
<oaf:url>http://dx.doi.org/10.1594/PANGAEA.822742</oaf:url> |
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| 58 |
</oaf:webresource> |
|
| 59 |
</oaf:instance> |
|
| 60 |
</oaf:instances> |
|
| 61 |
</oaf:result> |
|
| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/full_samples/person1-1.1.xml | ||
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| 1 |
<oaf:person xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
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| 2 |
xmlns:oaf="http://namespace.openaire.eu/oaf" |
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xsi:schemaLocation="http://namespace.openaire.eu/oaf ../oaf-person-1.1.xsd"> |
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| 4 |
<oaf:firstname>A.</oaf:firstname> |
|
| 5 |
<oaf:secondnames>Martos-Rodríguez</oaf:secondnames> |
|
| 6 |
<oaf:fullname>Martos-Rodríguez, A.</oaf:fullname> |
|
| 7 |
<oaf:originalId>oai:europepmc.org:2620792</oaf:originalId> |
|
| 8 |
<oaf:collectedfrom name="Europe PubMed Central" |
|
| 9 |
id="opendoar____::8b6dd7db9af49e67306feb59a8bdc52c"/> |
|
| 10 |
<oaf:rels> |
|
| 11 |
<oaf:rel inferred="false" semantics="isAuthorOf" provenance="sysimport:crosswalk:repository"> |
|
| 12 |
<oaf:target id="od_______908::4bb59505385942b445601b3951c973d9" type="result"> |
|
| 13 |
<oaf:resulttitle>Mechanoreceptors in collateral knee ligaments: |
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| 14 |
an animal experiment</oaf:resulttitle> |
|
| 15 |
<oaf:dateofacceptance>1999-09-01</oaf:dateofacceptance> |
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| 16 |
<oaf:publisher>Springer-Verlag</oaf:publisher> |
|
| 17 |
<oaf:resulttype>publication</oaf:resulttype> |
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| 18 |
</oaf:target> |
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| 19 |
</oaf:rel> |
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| 20 |
</oaf:rels> |
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| 21 |
</oaf:person> |
|
| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/full_samples/dataset3-1.1.xml | ||
|---|---|---|
| 1 |
<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
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| 2 |
xmlns:oaf="http://namespace.openaire.eu/oaf" |
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xsi:schemaLocation="http://namespace.openaire.eu/oaf ../oaf-dataset-1.1.xsd"> |
|
| 4 |
<oaf:title>Exploring human breast milk composition by |
|
| 5 |
NMR-based metabolomics</oaf:title> |
|
| 6 |
<oaf:dateofacceptance>2014-01-01</oaf:dateofacceptance> |
|
| 7 |
<oaf:publisher>Figshare</oaf:publisher> |
|
| 8 |
<oaf:resulttype>dataset</oaf:resulttype> |
|
| 9 |
<oaf:language code="und">Undetermined</oaf:language> |
|
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|
| 14 |
<oaf:subject type="keyword">Microbiology</oaf:subject> |
|
| 15 |
<oaf:subject type="keyword">Computational |
|
| 16 |
Biology</oaf:subject> |
|
| 17 |
<oaf:subject type="keyword">Virology</oaf:subject> |
|
| 18 |
<oaf:subject type="keyword">Immunology</oaf:subject> |
|
| 19 |
<oaf:subject type="keyword">29999 Physical Sciences not |
|
| 20 |
elsewhere classified</oaf:subject> |
|
| 21 |
<oaf:subject type="keyword">Space Science</oaf:subject> |
|
| 22 |
<oaf:subject type="keyword">Genetics</oaf:subject> |
|
| 23 |
<oaf:subject type="keyword">69999 Biological Sciences |
|
| 24 |
not elsewhere classified</oaf:subject> |
|
| 25 |
<oaf:subject type="keyword">Infectious |
|
| 26 |
Diseases</oaf:subject> |
|
| 27 |
<oaf:subject type="mesheuropmc" provenance="inference">parasitic diseases</oaf:subject> |
|
| 28 |
<oaf:subject type="mesheuropmc" provenance="inference">animal diseases</oaf:subject> |
|
| 29 |
<oaf:subject type="keyword">Cancer</oaf:subject> |
|
| 30 |
<oaf:format/> |
|
| 31 |
<oaf:description>Abstract Background Fasciola gigantica, the tropical liver fluke, |
|
| 32 |
infects buffaloes in Asian and African countries and causes significant economic |
|
| 33 |
losses and poses public health threat in these countries. However, little is |
|
| 34 |
known of the transcriptional response of buffaloes to infection with F. |
|
| 35 |
gigantica. The objective of the present study was to perform the first |
|
| 36 |
transcriptomic analysis of buffalo liver infected by F. gigantica. Understanding |
|
| 37 |
the mechanisms that underpin F. gigantica infection in buffaloes will contribute |
|
| 38 |
to our ability to control this parasite. Methods We challenged buffaloes with |
|
| 39 |
500 viable F. gigantica metacercariae and collected liver samples through a time |
|
| 40 |
course at 3, 42 and 70Â days post-infection (dpi). Then, we performed gene |
|
| 41 |
expression analysis on liver samples using RNA sequencing (RNA-Seq) Illumina |
|
| 42 |
technology and confirmed the RNA-Seq data by quantitative RT-PCR analysis. |
|
| 43 |
Results Totals of 496, 880 and 441 differentially expressed transcripts were |
|
| 44 |
identified in the infected livers at 3, 42 and 70 dpi, respectively. Gene |
|
| 45 |
Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis |
|
| 46 |
revealed that transcriptional changes in the liver of infected buffaloes evolve |
|
| 47 |
over the course of infection. The predominant response of buffaloes to infection |
|
| 48 |
was mediated by certain pathways, such as MHC antigen processing and |
|
| 49 |
presentation, Toll-like receptor 4 (TLR4), transforming growth factor beta |
|
| 50 |
(TGF-β), and the cytochrome P450. Hepatic drug metabolizing enzymes and bile |
|
| 51 |
secretion were also affected. Conclusions Fasciola gigantica can induce |
|
| 52 |
statistically significant and biologically plausible differences in the hepatic |
|
| 53 |
gene expression of infected buffaloes. These findings provide new insights into |
|
| 54 |
the response of buffaloes to F. gigantica over the course of infection, which |
|
| 55 |
may be useful in determining pathways that can modulate host-parasite |
|
| 56 |
interaction and thus potentially important for clearance of the |
|
| 57 |
parasite.</oaf:description> |
|
| 58 |
<oaf:embargoenddate/> |
|
| 59 |
<oaf:device/> |
|
| 60 |
<oaf:collectedfrom name="Datacite"/> |
|
| 61 |
<oaf:pid type="doi">10.6084/m9.figshare.c.3678754</oaf:pid> |
|
| 62 |
<oaf:originalId>10.6084/m9.figshare.c.3678754</oaf:originalId> |
|
| 63 |
<oaf:originalId>http://dx.doi.org/10.6084/m9.figshare.c.3678754</oaf:originalId> |
|
| 64 |
<oaf:creator rank="4">Jun-Jun He</oaf:creator> |
|
| 65 |
<oaf:creator rank="9">Ai-Jiang Guo</oaf:creator> |
|
| 66 |
<oaf:creator rank="7">Jian-Gang Ma</oaf:creator> |
|
| 67 |
<oaf:creator rank="2">Xiao-Xuan Zhang</oaf:creator> |
|
| 68 |
<oaf:creator rank="10">Xing-Quan Zhu</oaf:creator> |
|
| 69 |
<oaf:creator rank="8">Wei-Yi Huang</oaf:creator> |
|
| 70 |
<oaf:creator rank="6">Wen-Bin Zheng</oaf:creator> |
|
| 71 |
<oaf:creator rank="5">Zhao-An Sheng</oaf:creator> |
|
| 72 |
<oaf:creator rank="3">Hany Elsheikha</oaf:creator> |
|
| 73 |
<oaf:creator rank="1">Fu-Kai Zhang</oaf:creator> |
|
| 74 |
<oaf:relationships> |
|
| 75 |
<oaf:relationship semantics="isRelatedTo" provenance="inference"> |
|
| 76 |
<oaf:target type="result" id="dedup_wf_001::b9d8f5a45247260d099c5900a9a9b6ab"> |
|
| 77 |
<oaf:publisher>BioMed Central</oaf:publisher> |
|
| 78 |
<oaf:dateofacceptance>2017-02-01</oaf:dateofacceptance> |
|
| 79 |
<oaf:resulttitle>Transcriptomic responses of water buffalo liver to infection with the |
|
| 80 |
digenetic fluke Fasciola gigantica</oaf:resulttitle> |
|
| 81 |
<oaf:resulttype>publication</oaf:resulttype> |
|
| 82 |
</oaf:target> |
|
| 83 |
</oaf:relationship> |
|
| 84 |
</oaf:relationships> |
|
| 85 |
<oaf:instances> |
|
| 86 |
<oaf:instance> |
|
| 87 |
<oaf:hostedby name="figshare"/> |
|
| 88 |
<oaf:instancetype>Collection</oaf:instancetype> |
|
| 89 |
<oaf:accessrights code="UNKNOWN">UNKNOWN</oaf:accessrights> |
|
| 90 |
<oaf:webresource> |
|
| 91 |
<oaf:url>http://dx.doi.org/10.6084/m9.figshare.c.3678754</oaf:url> |
|
| 92 |
</oaf:webresource> |
|
| 93 |
</oaf:instance> |
|
| 94 |
</oaf:instances> |
|
| 95 |
</oaf:result> |
|
| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/transformations/transformed/trans_pub1.xml | ||
|---|---|---|
| 1 |
<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
|
| 2 |
xmlns:oaf="http://namespace.openaire.eu/oaf" |
|
| 3 |
xsi:schemaLocation="http://namespace.openaire.eu/oaf http://datathon.openaire.eu/datathon-schema/oaf-publication-1.1.xsd"> |
|
| 4 |
<oaf:description/> |
|
| 5 |
<oaf:language code="und">Undetermined</oaf:language> |
|
| 6 |
<oaf:dateofacceptance>2011-04-19</oaf:dateofacceptance> |
|
| 7 |
<oaf:embargoenddate/> |
|
| 8 |
<oaf:resulttype>publication</oaf:resulttype> |
|
| 9 |
<oaf:resulttitle>Vision system for wearable and robotic |
|
| 10 |
uses</oaf:resulttitle> |
|
| 11 |
<oaf:journal issn="" eissn="" lissn="" ep="" iss="" sp="" vol=""/> |
|
| 12 |
<oaf:subject type="ddc">ddc:620</oaf:subject> |
|
| 13 |
<oaf:subject type="ddc">ddc:</oaf:subject> |
|
| 14 |
<oaf:publisher/> |
|
| 15 |
<oaf:source/> |
|
| 16 |
<oaf:originalId>oai:mediatum.ub.tum.de:node/1134307</oaf:originalId> |
|
| 17 |
<oaf:collectedfrom name="MediaTUM"/> |
|
| 18 |
<oaf:pid type=""/> |
|
| 19 |
<oaf:bestaccessrights code="RESTRICTED">Restricted</oaf:bestaccessrights> |
|
| 20 |
<oaf:creator rank="1">Schneider, E. and Kohlbecher, S. and Villgrattner, T. and Bartl, |
|
| 21 |
K. and Bardins, S. and Poitschke, T. and Ulbrich, H. and Brandt, |
|
| 22 |
T.</oaf:creator> |
|
| 23 |
<oaf:relationships/> |
|
| 24 |
<oaf:instances> |
|
| 25 |
<oaf:instance> |
|
| 26 |
<oaf:instancetype>Article</oaf:instancetype> |
|
| 27 |
<oaf:hostedby name="MediaTUM"/> |
|
| 28 |
<oaf:accessrights code="RESTRICTED">Restricted</oaf:accessrights> |
|
| 29 |
<oaf:webresource> |
|
| 30 |
<oaf:url>http://mediatum.ub.tum.de/node?id=1134307</oaf:url> |
|
| 31 |
</oaf:webresource> |
|
| 32 |
</oaf:instance> |
|
| 33 |
</oaf:instances> |
|
| 34 |
<oaf:externalreference> |
|
| 35 |
<oaf:sitename>Protein Data Bank</oaf:sitename> |
|
| 36 |
<oaf:url>http://www.rcsb.org/pdb/explore/explore.do?structureId=2ep3</oaf:url> |
|
| 37 |
<oaf:refidentifier type="accessionNumber">2ep3</oaf:refidentifier> |
|
| 38 |
</oaf:externalreference> |
|
| 39 |
</oaf:result> |
|
| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/transformations/transformed/trans_dataset2.xml | ||
|---|---|---|
| 1 |
<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
|
| 2 |
xmlns:oaf="http://namespace.openaire.eu/oaf" |
|
| 3 |
xsi:schemaLocation="http://namespace.openaire.eu/oaf http://datathon.openaire.eu/datathon-schema/oaf-dataset-1.1.xsd"> |
|
| 4 |
<oaf:language code="und">Undetermined</oaf:language> |
|
| 5 |
<oaf:version/> |
|
| 6 |
<oaf:dateofacceptance>2015-01-01</oaf:dateofacceptance> |
|
| 7 |
<oaf:resulttype>dataset</oaf:resulttype> |
|
| 8 |
<oaf:size/> |
|
| 9 |
<oaf:resulttitle>Hydrochemistry measured on water bottle samples |
|
| 10 |
during Bjarni Saemundsson cruise B16/92</oaf:resulttitle> |
|
| 11 |
<oaf:format/> |
|
| 12 |
<oaf:publisher>PANGAEA</oaf:publisher> |
|
| 13 |
<oaf:subject type=""/> |
|
| 14 |
<oaf:description/> |
|
| 15 |
<oaf:embargoenddate/> |
|
| 16 |
<oaf:resourcetype/> |
|
| 17 |
<oaf:device/> |
|
| 18 |
<oaf:originalId>10.1594/PANGAEA.844769</oaf:originalId> |
|
| 19 |
<oaf:collectedfrom name="PANGAEA"/> |
|
| 20 |
<oaf:pid type="doi">10.1594/PANGAEA.844769</oaf:pid> |
|
| 21 |
<oaf:creator rank="1">Jón Ólafsson</oaf:creator> |
|
| 22 |
<oaf:relationships> |
|
| 23 |
<oaf:relationship semantics="isProducedBy" provenance="sysimport:crosswalk:datasetarchive"> |
|
| 24 |
<oaf:target type="project" id="corda_______::0f39cd03378bd342ab581149e60f10a3"> |
|
| 25 |
<oaf:code>264879</oaf:code> |
|
| 26 |
<oaf:contracttype code="CP">Collaborative project</oaf:contracttype> |
|
| 27 |
<oaf:funding> |
|
| 28 |
<oaf:funder id="ec__________::EC" shortname="EC" name="European Commission" jurisdiction="EU"/> |
|
| 29 |
<oaf:funding_level_0 name="FP7">ec__________::EC::FP7</oaf:funding_level_0> |
|
| 30 |
<oaf:funding_level_1 name="SP1">ec__________::EC::FP7::SP1</oaf:funding_level_1> |
|
| 31 |
<oaf:funding_level_2 name="ENV">ec__________::EC::FP7::SP1::ENV</oaf:funding_level_2> |
|
| 32 |
</oaf:funding> |
|
| 33 |
<oaf:acronym>CARBOCHANGE</oaf:acronym> |
|
| 34 |
<oaf:projecttitle>Changes in carbon uptake and emissions by oceans in a changing |
|
| 35 |
climate</oaf:projecttitle> |
|
| 36 |
</oaf:target> |
|
| 37 |
</oaf:relationship> |
|
| 38 |
</oaf:relationships> |
|
| 39 |
<oaf:instances> |
|
| 40 |
<oaf:instance> |
|
| 41 |
<oaf:accessrights code="OPEN">Open Access</oaf:accessrights> |
|
| 42 |
<oaf:hostedby name="PANGAEA"/> |
|
| 43 |
<oaf:instancetype>Dataset</oaf:instancetype> |
|
| 44 |
<oaf:webresource> |
|
| 45 |
<oaf:url>http://dx.doi.org/10.1594/PANGAEA.844769</oaf:url> |
|
| 46 |
</oaf:webresource> |
|
| 47 |
</oaf:instance> |
|
| 48 |
</oaf:instances> |
|
| 49 |
</oaf:result> |
|
| modules/dnet-openaire-schema/trunk/src/1.1_datathon2017/transformations/transformed/trans_pub2.xml | ||
|---|---|---|
| 1 |
<oaf:result xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
|
| 2 |
xmlns:oaf="http://namespace.openaire.eu/oaf" |
|
| 3 |
xsi:schemaLocation="http://namespace.openaire.eu/oaf http://datathon.openaire.eu/datathon-schema/oaf-publication-1.1.xsd"> |
|
| 4 |
<oaf:publisher>PeerJ Inc.</oaf:publisher> |
|
| 5 |
<oaf:language code="eng">English</oaf:language> |
|
| 6 |
<oaf:journal issn="2167-8359" eissn="2167-8359" lissn="" ep="" iss="" sp="" vol="3">PeerJ</oaf:journal> |
|
| 7 |
<oaf:description>Yeasts play an important role in the biology of the fruit fly, |
|
| 8 |
Drosophila melanogaster. In addition to being a valuable source of nutrition, |
|
| 9 |
yeasts affect D. melanogaster behavior and interact with the host immune system. |
|
| 10 |
Most experiments investigating the role of yeasts in D. melanogaster biology use |
|
| 11 |
the baker’s yeast, Saccharomyces cerevisiae. However, S. cerevisiae is rarely |
|
| 12 |
found with natural populations of D. melanogaster or other Drosophila species. |
|
| 13 |
Moreover, the strain of S. cerevisiae used most often in D. melanogaster |
|
| 14 |
experiments is a commercially and industrially important strain that, to the |
|
| 15 |
best of our knowledge, was not isolated from flies. Since disrupting natural |
|
| 16 |
host–microbe interactions can have profound effects on host biology, the results |
|
| 17 |
from D. melanogaster–S. cerevisiae laboratory experiments may not be fully |
|
| 18 |
representative of host–microbe interactions in nature. In this study, we explore |
|
| 19 |
the D. melanogaster-yeast relationship using five different strains of yeast |
|
| 20 |
that were isolated from wild Drosophila populations. Ingested live yeasts have |
|
| 21 |
variable persistence in the D. melanogaster gastrointestinal tract. For example, |
|
| 22 |
Hanseniaspora occidentalis persists relative to S. cerevisiae, while |
|
| 23 |
Brettanomyces naardenensis is removed. Despite these differences in persistence |
|
| 24 |
relative to S. cerevisiae, we find that all yeasts decrease in total abundance |
|
| 25 |
over time. Reactive oxygen species (ROS) are an important component of the D. |
|
| 26 |
melanogaster anti-microbial response and can inhibit S. cerevisiae growth in the |
|
| 27 |
intestine. To determine if sensitivity to ROS explains the differences in yeast |
|
| 28 |
persistence, we measured yeast growth in the presence and absence of hydrogen |
|
| 29 |
peroxide. We find that B. naardenesis is completely inhibited by hydrogen |
|
| 30 |
peroxide, while H. occidentalis is not, which is consistent with yeast |
|
| 31 |
sensitivity to ROS affecting persistence within the D. melanogaster |
|
| 32 |
gastrointestinal tract. We also compared the feeding preference of D. |
|
| 33 |
melanogaster when given the choice between a naturally associated yeast and S. |
|
| 34 |
cerevisiae. We do not find a correlation between preferred yeasts and those that |
|
| 35 |
persist in the intestine. Notably, in no instances is S. cerevisiae preferred |
|
| 36 |
over the naturally associated strains. Overall, our results show that D. |
|
| 37 |
melanogaster-yeast interactions are more complex than might be revealed in |
|
| 38 |
experiments that use only S. cerevisiae. We propose that future research utilize |
|
| 39 |
other yeasts, and especially those that are naturally associated with |
|
| 40 |
Drosophila, to more fully understand the role of yeasts in Drosophila biology. |
|
| 41 |
Since the genetic basis of host–microbe interactions is shared across taxa and |
|
| 42 |
since many of these genes are initially discovered in D. melanogaster, a more |
|
| 43 |
realistic fly-yeast model system will benefit our understanding of host–microbe |
|
| 44 |
interactions throughout the animal kingdom.</oaf:description> |
|
| 45 |
<oaf:resulttitle>Interactions between Drosophila and its natural |
|
| 46 |
yeast symbionts—Is Saccharomyces cerevisiae a good model for studying the |
|
| 47 |
fly-yeast relationship?</oaf:resulttitle> |
|
| 48 |
<oaf:resulttype>publication</oaf:resulttype> |
|
| 49 |
<oaf:subject type="keyword">Symbiosis</oaf:subject> |
|
| 50 |
<oaf:subject type="keyword">Yeast</oaf:subject> |
|
| 51 |
<oaf:subject type="keyword">Microbiology</oaf:subject> |
|
| 52 |
<oaf:subject type="keyword">Entomology</oaf:subject> |
|
| 53 |
<oaf:subject type="keyword">Mycology</oaf:subject> |
|
Also available in: Unified diff
schema does not need anymore to be processed for the vocabularies URL change, hence we can have everything simpler and keep only one folder