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package eu.dnetlib.repo.manager.service;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.fasterxml.jackson.databind.SerializationFeature;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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import eu.dnetlib.domain.enabling.Vocabulary;
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import eu.dnetlib.repo.manager.domain.RepositorySnippet;
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import eu.dnetlib.repo.manager.domain.RequestFilter;
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import eu.dnetlib.repo.manager.exception.ResourceNotFoundException;
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import eu.dnetlib.repo.manager.shared.*;
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import eu.dnetlib.repo.manager.utils.Converter;
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import gr.uoa.di.driver.enabling.vocabulary.VocabularyLoader;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.log4j.Logger;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.json.JSONObject;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.core.ParameterizedTypeReference;
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import org.springframework.http.*;
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import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
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import org.springframework.security.core.Authentication;
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import org.springframework.security.core.context.SecurityContextHolder;
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import org.springframework.stereotype.Service;
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import org.springframework.web.bind.annotation.PathVariable;
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import org.springframework.web.bind.annotation.RequestBody;
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import org.springframework.web.bind.annotation.RequestParam;
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import org.springframework.web.client.RestClientException;
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import org.springframework.web.client.RestTemplate;
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import org.springframework.web.util.UriComponents;
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import org.springframework.web.util.UriComponentsBuilder;
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import javax.annotation.PostConstruct;
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import java.io.IOException;
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import java.sql.Timestamp;
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import java.util.*;
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import java.util.concurrent.ConcurrentHashMap;
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import java.util.stream.Collectors;
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@Service("repositoryService")
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public class RepositoryServiceImpl implements RepositoryService {
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@Value("${api.baseAddress}")
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private String baseAddress;
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@Autowired
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RestTemplate restTemplate;
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private HttpHeaders httpHeaders;
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private final String[] vocabularyNames = {"dnet:countries", "dnet:datasource_typologies", "dnet:compatibilityLevel"};
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private static final Logger LOGGER = Logger.getLogger(RepositoryServiceImpl.class);
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@Value("${services.repomanager.usageStatisticsDiagramsBaseURL}")
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private String usageStatisticsDiagramsBaseURL;
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@Value("${services.repomanager.usageStatisticsNumbersBaseURL}")
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private String usageStatisticsNumbersBaseURL;
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@Autowired
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private VocabularyLoader vocabularyLoader;
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@Autowired
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private PiWikService piWikService;
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@Autowired
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private EmailUtils emailUtils;
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private Map<String, Vocabulary> vocabularyMap = new ConcurrentHashMap<String, Vocabulary>();
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private Map<String, String> countriesMap = new HashMap<>();
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private Map<String, String> inverseCountriesMap = new HashMap<>();
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private static Map<String,List<String>> dataSourceClass = new HashMap<String,List<String>>(){{
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put("opendoar",new ArrayList<String>(){{ add("pubsrepository::institutional");
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add("pubsrepository::thematic");
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add("pubsrepository::unknown");
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add("pubsrepository::mock");
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}});
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put("re3data",new ArrayList<String>(){{ add("datarepository::unknown");
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}});
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put("journal",new ArrayList<String>(){{ add("pubsrepository::journal");
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}});
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put("aggregator",new ArrayList<String>(){{ add("aggregator::pubsrepository::institutional");
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add("aggregator::pubsrepository::journals");
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add("aggregator::datarepository");
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add("aggregator::pubsrepository::unknown");
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}});
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}};
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private static Map<String,String> invertedDataSourceClass = new HashMap<String,String>(){{
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put("pubsrepository::institutional","opendoar");
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put("pubsrepository::thematic","opendoar");
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put("pubsrepository::unknown","opendoar");
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put("pubsrepository::mock","opendoar");
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put("datarepository::unknown","re3data");
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put("pubsrepository::journal","journal");
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put("aggregator::pubsrepository::institutional","aggregator");
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put("aggregator::pubsrepository::journals","aggregator");
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put("aggregator::datarepository","aggregator");
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put("aggregator::pubsrepository::unknown","aggregator");
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}};
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@PostConstruct
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private void init() {
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LOGGER.debug("Initialization method of repository api!");
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LOGGER.debug("Updated version!");
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httpHeaders = new HttpHeaders();
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httpHeaders.setContentType(MediaType.APPLICATION_JSON_UTF8);
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// httpHeaders.set("Content-Type", "application/json");
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for (String vocName : vocabularyNames) {
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vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
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}
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Country[] countries = getCountries();
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for (Country c : countries) {
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countriesMap.put(c.getName(), c.getCode());
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inverseCountriesMap.put(c.getCode(), c.getName());
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}
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}
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@Override
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public Country[] getCountries() {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/countries")
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.build().encode();
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return restTemplate.getForObject(uriComponents.toUri(), Country[].class);
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}
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@Override
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public List<RepositorySnippet> getRepositoriesByCountry(@PathVariable("country") String country,
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@PathVariable("mode") String mode,
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@RequestParam(value = "managed",required=false) Boolean managed) throws JSONException, IOException {
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LOGGER.debug("Getting repositories by country!");
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int page = 0;
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int size = 100;
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List<RepositorySnippet> resultSet = new ArrayList<>();
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ObjectMapper mapper = new ObjectMapper();
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String filterKey = "UNKNOWN";
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if (mode.equalsIgnoreCase("opendoar"))
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filterKey = "openaire____::opendoar";
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else if (mode.equalsIgnoreCase("re3data"))
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filterKey = "openaire____::re3data";
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LOGGER.debug("Country code equals : " + country);
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LOGGER.debug("Filter mode equals : " + filterKey);
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UriComponents uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setCountry(country);
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requestFilter.setCollectedfrom(filterKey);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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while (jsonArray.length() > 0 ) {
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resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
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mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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page += 1;
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uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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}
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return resultSet;
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}catch (Exception e){
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LOGGER.debug("Exception on getRepositoriesByCountry" , e);
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// emailUtils.reportException(e);
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throw e;
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}
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}
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private Repository updateRepositoryInfo(Repository r) throws JSONException {
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/*
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* from datasource class
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* we get the datasource type form the inverted map
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* */
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r.setDatasourceType(getRepositoryType(r.getDatasourceClass()));
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r.setInterfaces(this.getRepositoryInterface(r.getId()));
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r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
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r.setCountryName(getCountryName(r.getCountryCode()));
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return r;
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}
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private Collection<Repository> getRepositoriesByMode(String mode, List<Repository> rs) {
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List<Repository> reps = new ArrayList<>();
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for (Repository r : rs) {
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if (r.getCollectedFrom() != null && r.getCollectedFrom().equals(mode))
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reps.add(r);
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}
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return reps;
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}
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@Override
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public List<Repository> getRepositoriesOfUser(@PathVariable("userEmail") String userEmail,
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@PathVariable("page") String page,
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@PathVariable("size") String size) throws JSONException {
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LOGGER.debug("Retreiving repositories of user : " + userEmail );
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UriComponents uriComponents = searchDatasource(page,size);
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setRegisteredby(userEmail);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
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for (Repository r : repos)
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this.updateRepositoryInfo(r);
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return repos;
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}catch (Exception e){
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LOGGER.debug("Exception on getRepositoriesOfUser" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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@Override
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public Repository getRepositoryById(@PathVariable("id") String id) throws JSONException,ResourceNotFoundException {
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LOGGER.debug("Retreiving repositories with id : " + id );
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Repository repo = null;
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UriComponents uriComponents = searchDatasource("0","100");
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setId(id);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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if(jsonArray.length() == 0)
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throw new ResourceNotFoundException();
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258
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repo = Converter.jsonToRepositoryObject(jsonArray.getJSONObject(0));
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return updateRepositoryInfo(repo);
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}catch (JSONException e){
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LOGGER.debug("Exception on getRepositoryById" , e);
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emailUtils.reportException(e);
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throw e;
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}
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266
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}
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268
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269
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270
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@Override
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public List<AggregationDetails> getRepositoryAggregations(@PathVariable("id") String id) throws JSONException {
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LOGGER.debug("Retreiving aggregations for repository with id : " + id );
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UriComponents uriComponents = searchDatasource("0","100");
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setId(id);
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277
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278
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List<AggregationDetails> aggregationHistory = new ArrayList<>();
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try {
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281
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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282
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JSONObject repository = new JSONObject(rs);
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283
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284
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if(repository.getJSONArray("datasourceInfo").length() == 0)
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return aggregationHistory;
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286
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aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
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287
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return aggregationHistory.size() == 0? aggregationHistory : aggregationHistory.stream()
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.sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
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289
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.limit(20)
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290
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.collect(Collectors.toList());
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} catch (JSONException e) {
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292
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LOGGER.debug("Exception on getRepositoryAggregations" , e);
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293
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emailUtils.reportException(e);
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294
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throw e;
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295
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}
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296
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297
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}
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298
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299
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@Override
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300
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public Map<String, List<AggregationDetails>> getRepositoryAggregationsByYear(@PathVariable("id") String id) throws JSONException {
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301
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LOGGER.debug("Retreiving aggregations (by year) for repository with id : " + id );
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302
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UriComponents uriComponents = searchDatasource("0","100");
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303
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RequestFilter requestFilter = new RequestFilter();
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304
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requestFilter.setId(id);
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305
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306
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List<AggregationDetails> aggregationHistory = new ArrayList<>();
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307
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Map<String, List<AggregationDetails>> aggregationByYear = new HashMap<>();
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308
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try {
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309
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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310
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JSONObject repository = new JSONObject(rs);
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311
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312
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if(repository.getJSONArray("datasourceInfo").length() == 0)
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313
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return aggregationByYear;
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314
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315
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aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
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316
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return aggregationHistory.size() == 0? aggregationByYear:createYearMap(aggregationHistory);
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317
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318
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} catch (JSONException e) {
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319
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LOGGER.debug("Exception on getRepositoryAggregations" , e);
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320
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emailUtils.reportException(e);
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321
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throw e;
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322
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}
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323
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}
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324
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325
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private Map<String,List<AggregationDetails>> createYearMap(List<AggregationDetails> aggregationHistory) {
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326
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Map<String, List<AggregationDetails>> aggregationByYear;
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327
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aggregationHistory = aggregationHistory.stream()
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328
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.sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
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329
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.collect(Collectors.toList());
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330
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331
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return aggregationHistory.stream()
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332
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.collect(Collectors.groupingBy(AggregationDetails::getYear));
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333
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}
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334
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335
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336
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@Override
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337
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public List<Repository> getRepositoriesByName(@PathVariable("name") String name,
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338
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@PathVariable("page") String page,
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339
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@PathVariable("size") String size) throws JSONException {
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340
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341
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LOGGER.debug("Retreiving repositories with official name : " + name );
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342
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UriComponents uriComponents = searchDatasource("0","100");
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343
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RequestFilter requestFilter = new RequestFilter();
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344
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requestFilter.setOfficialname(name);
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345
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346
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try{
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347
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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348
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
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349
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for (Repository r : repos)
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350
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updateRepositoryInfo(r);
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351
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return repos;
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352
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}catch (Exception e){
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353
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LOGGER.debug("Exception on getRepositoriesByName" , e);
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354
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emailUtils.reportException(e);
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355
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throw e;
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356
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}
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357
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358
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}
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359
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360
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@Override
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361
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public List<RepositoryInterface> getRepositoryInterface(@PathVariable("id") String id) throws JSONException {
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362
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363
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UriComponents uriComponents = UriComponentsBuilder
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364
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.fromHttpUrl(baseAddress + "/ds/api/")
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365
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.path("/{id}")
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366
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.build().expand(id).encode();
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367
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368
|
try{
|
|
369
|
String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
|
|
370
|
return Converter.jsonToRepositoryInterfaceList(new JSONObject(rs));
|
|
371
|
}catch (Exception e ){
|
|
372
|
LOGGER.debug("Exception on getRepositoryInterface" , e);
|
|
373
|
emailUtils.reportException(e);
|
|
374
|
throw e;
|
|
375
|
}
|
|
376
|
|
|
377
|
}
|
|
378
|
|
|
379
|
@Override
|
|
380
|
public Repository addRepository(@RequestParam("datatype") String datatype,
|
|
381
|
@RequestBody Repository repository) throws Exception {
|
|
382
|
|
|
383
|
LOGGER.debug("storing " + datatype + " repository with id: " + repository.getId());
|
|
384
|
|
|
385
|
repository.setCountryCode(countriesMap.get(repository.getCountryName()));
|
|
386
|
repository.setActivationId(UUID.randomUUID().toString());
|
|
387
|
repository.setCollectedFrom("infrastruct_::openaire");
|
|
388
|
|
|
389
|
if (datatype.equals("journal")) {
|
|
390
|
repository.setId("openaire____::issn" + repository.getIssn());
|
|
391
|
repository.setNamespacePrefix("issn" + repository.getIssn());
|
|
392
|
this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
|
|
393
|
}else if (datatype.equals("aggregator")) {
|
|
394
|
repository.setId("openaire____::" + com.unboundid.util.Base64.encode(repository.getOfficialName()));
|
|
395
|
repository.setNamespacePrefix(DigestUtils.md5Hex(repository.getOfficialName()).substring(0,12));
|
|
396
|
this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
|
|
397
|
}else {
|
|
398
|
this.latentUpdate(repository, SecurityContextHolder.getContext().getAuthentication());
|
|
399
|
}
|
|
400
|
|
|
401
|
return repository;
|
|
402
|
}
|
|
403
|
|
|
404
|
/* update method acting as add -> send email with registration topic/body*/
|
|
405
|
private Repository latentUpdate(Repository repository, Authentication authentication) throws Exception {
|
|
406
|
UriComponents uriComponents = UriComponentsBuilder
|
|
407
|
.fromHttpUrl(baseAddress + "/ds/update/")
|
|
408
|
.build()
|
|
409
|
.encode();
|
|
410
|
|
|
411
|
try {
|
|
412
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
|
413
|
LOGGER.debug("JSON to add(update) -> " + json_repository);
|
|
414
|
|
|
415
|
//
|
|
416
|
// // TODO delete these 3 lines
|
|
417
|
// HttpHeaders temp = new HttpHeaders();
|
|
418
|
// temp.setContentType(MediaType.APPLICATION_JSON_UTF8);
|
|
419
|
|
|
420
|
HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
|
|
421
|
ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
|
|
422
|
|
|
423
|
if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
|
|
424
|
emailUtils.sendUserRegistrationEmail(repository, authentication);
|
|
425
|
}else
|
|
426
|
LOGGER.debug(responseEntity.getBody().toString());
|
|
427
|
|
|
428
|
return repository;
|
|
429
|
} catch (Exception e) {
|
|
430
|
LOGGER.debug("Exception on updateRepository" , e);
|
|
431
|
emailUtils.reportException(e);
|
|
432
|
throw e;
|
|
433
|
}
|
|
434
|
|
|
435
|
|
|
436
|
}
|
|
437
|
|
|
438
|
@Override
|
|
439
|
public Repository updateRepository(@RequestBody Repository repository,Authentication authentication) throws Exception {
|
|
440
|
UriComponents uriComponents = UriComponentsBuilder
|
|
441
|
.fromHttpUrl(baseAddress + "/ds/update/")
|
|
442
|
.build()
|
|
443
|
.encode();
|
|
444
|
|
|
445
|
try {
|
|
446
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
|
447
|
|
|
448
|
LOGGER.debug("JSON to update -> " + json_repository);
|
|
449
|
|
|
450
|
HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
|
|
451
|
ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity
|
|
452
|
, ResponseEntity.class);
|
|
453
|
|
|
454
|
if (responseEntity.getStatusCode().equals(HttpStatus.OK))
|
|
455
|
emailUtils.sendUserUpdateRepositoryEmail(repository, authentication);
|
|
456
|
else
|
|
457
|
LOGGER.debug(responseEntity.getBody().toString());
|
|
458
|
|
|
459
|
return repository;
|
|
460
|
} catch (Exception e) {
|
|
461
|
LOGGER.debug("Exception on updateRepository" , e);
|
|
462
|
emailUtils.reportException(e);
|
|
463
|
throw e;
|
|
464
|
}
|
|
465
|
}
|
|
466
|
|
|
467
|
private void updateInterface(String datatype,RepositoryInterface iFace) {
|
|
468
|
//TODO call update base url
|
|
469
|
//((DatasourceManagerService) this.dmService.getService()).updateBaseUrl(repo.getId(), iFace.getId(), iFace.getBaseUrl());
|
|
470
|
if (!iFace.getAccessSet().isEmpty()) {
|
|
471
|
LOGGER.debug("set not empty: " + iFace.getAccessSet());
|
|
472
|
//TODO call update method for access params
|
|
473
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "set", iFace.getAccessSet(), false);
|
|
474
|
} else {
|
|
475
|
//TODO call deleteAccessParamOrExtraField
|
|
476
|
//((DatasourceManagerService) this.dmService.getService()).deleteAccessParamOrExtraField(repo.getId(), iFace.getId(), "set");
|
|
477
|
}
|
|
478
|
//TODO update content description
|
|
479
|
//((DatasourceManagerService) this.dmService.getService()).updateContentDescription(repo.getId(), iFace.getId(), "metadata");
|
|
480
|
if (datatype.equals("re3data")) {
|
|
481
|
//TODO call update access params
|
|
482
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_datacite", false);
|
|
483
|
iFace.setAccessFormat("oai_datacite");
|
|
484
|
} else {
|
|
485
|
//TODO call update access params
|
|
486
|
//((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_dc", false);
|
|
487
|
iFace.setAccessFormat("oai_dc");
|
|
488
|
}
|
|
489
|
|
|
490
|
}
|
|
491
|
|
|
492
|
private void storeRepository(Repository repository, Authentication authentication) throws Exception {
|
|
493
|
|
|
494
|
Date utilDate = new Date();
|
|
495
|
Timestamp date = new Timestamp(utilDate.getTime());
|
|
496
|
repository.setDateOfCollection(date);
|
|
497
|
repository.setAggregator("OPENAIRE");
|
|
498
|
repository.setCountryCode(countriesMap.get(repository.getCountryName()));
|
|
499
|
|
|
500
|
UriComponents uriComponents = UriComponentsBuilder
|
|
501
|
.fromHttpUrl(baseAddress + "/ds/add/")
|
|
502
|
.build()
|
|
503
|
.encode();
|
|
504
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
|
505
|
HttpEntity<String> httpEntity = new HttpEntity <String> (json_repository,httpHeaders);
|
|
506
|
ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
|
|
507
|
|
|
508
|
if(responseEntity.getStatusCode().equals(HttpStatus.OK))
|
|
509
|
emailUtils.sendUserRegistrationEmail(repository,authentication);
|
|
510
|
else {
|
|
511
|
LOGGER.debug(responseEntity.getBody().toString());
|
|
512
|
}
|
|
513
|
}
|
|
514
|
|
|
515
|
@Override
|
|
516
|
public void deleteRepositoryInterface(@RequestParam("id") String id ,
|
|
517
|
@RequestParam("registeredBy") String registeredBy){
|
|
518
|
UriComponents uriComponents = UriComponentsBuilder
|
|
519
|
.fromHttpUrl(baseAddress + "/ds/api/")
|
|
520
|
.path("/{id}")
|
|
521
|
.build().expand(id).encode();
|
|
522
|
LOGGER.debug(uriComponents.toUri());
|
|
523
|
restTemplate.delete(uriComponents.toUri());
|
|
524
|
}
|
|
525
|
|
|
526
|
@Override
|
|
527
|
public RepositoryInterface addRepositoryInterface(@RequestParam("datatype") String datatype,
|
|
528
|
@RequestParam("repoId") String repoId,
|
|
529
|
@RequestParam("registeredBy") String registeredBy,
|
|
530
|
@RequestBody RepositoryInterface repositoryInterface) throws JSONException,ResourceNotFoundException {
|
|
531
|
try {
|
|
532
|
Repository e = this.getRepositoryById(repoId);
|
|
533
|
repositoryInterface = createRepositoryInterface(e,repositoryInterface,datatype);
|
|
534
|
String json_interface = Converter.repositoryInterfaceObjectToJson(e,repositoryInterface);
|
|
535
|
|
|
536
|
UriComponents uriComponents = UriComponentsBuilder
|
|
537
|
.fromHttpUrl(baseAddress + "/ds/api/add/")
|
|
538
|
.build()
|
|
539
|
.encode();
|
|
540
|
|
|
541
|
HttpEntity<String> httpEntity = new HttpEntity <String> (json_interface,httpHeaders);
|
|
542
|
restTemplate.postForObject(uriComponents.toUri(),httpEntity,String.class);
|
|
543
|
return repositoryInterface;
|
|
544
|
|
|
545
|
} catch (JSONException e) {
|
|
546
|
LOGGER.debug("Exception on addRepositoryInterface" , e);
|
|
547
|
emailUtils.reportException(e);
|
|
548
|
throw e;
|
|
549
|
}
|
|
550
|
}
|
|
551
|
|
|
552
|
private RepositoryInterface createRepositoryInterface(Repository repo, RepositoryInterface iFace, String datatype) {
|
|
553
|
|
|
554
|
iFace.setContentDescription("metadata");
|
|
555
|
iFace.setCompliance("UNKNOWN");
|
|
556
|
|
|
557
|
if (datatype.equals("re3data"))
|
|
558
|
iFace.setAccessFormat("oai_datacite");
|
|
559
|
else
|
|
560
|
iFace.setAccessFormat("oai_dc");
|
|
561
|
|
|
562
|
|
|
563
|
if (repo.getDatasourceClass() != null && !repo.getDatasourceClass().isEmpty())
|
|
564
|
iFace.setTypology(repo.getDatasourceClass());
|
|
565
|
else if (datatype.equalsIgnoreCase("journal"))
|
|
566
|
iFace.setTypology("pubsrepository::journal");
|
|
567
|
else if (datatype.equalsIgnoreCase("aggregator"))
|
|
568
|
iFace.setTypology("aggregator::pubsrepository::unknown");
|
|
569
|
else if (datatype.equalsIgnoreCase("opendoar"))
|
|
570
|
iFace.setTypology("pubsrepository::unknown");
|
|
571
|
else if (datatype.equalsIgnoreCase("re3data"))
|
|
572
|
iFace.setTypology("datarepository::unknown");
|
|
573
|
|
|
574
|
iFace.setRemovable(true);
|
|
575
|
iFace.setAccessProtocol("oai");
|
|
576
|
iFace.setMetadataIdentifierPath("//*[local-name()='header']/*[local-name()='identifier']");
|
|
577
|
iFace.setId("api_________::" + repo.getId() + "::" + UUID.randomUUID().toString().substring(0, 8));
|
|
578
|
if (iFace.getAccessSet().isEmpty()) {
|
|
579
|
LOGGER.debug("set is empty: " + iFace.getAccessSet());
|
|
580
|
iFace.removeAccessSet();
|
|
581
|
}
|
|
582
|
return iFace;
|
|
583
|
}
|
|
584
|
|
|
585
|
@Override
|
|
586
|
public List<String> getDnetCountries() {
|
|
587
|
LOGGER.debug("Getting dnet-countries!");
|
|
588
|
return Converter.readFile("countries.txt");
|
|
589
|
}
|
|
590
|
|
|
591
|
@Override
|
|
592
|
public List<String> getTypologies() {
|
|
593
|
return Converter.readFile("typologies.txt");
|
|
594
|
}
|
|
595
|
|
|
596
|
@Override
|
|
597
|
public List<Timezone> getTimezones() {
|
|
598
|
List<String> timezones = Converter.readFile("timezones.txt");
|
|
599
|
return Converter.toTimezones(timezones);
|
|
600
|
}
|
|
601
|
|
|
602
|
@Override
|
|
603
|
public List<String> getUrlsOfUserRepos(@PathVariable("user_email") String userEmail,
|
|
604
|
@PathVariable("page") String page,
|
|
605
|
@PathVariable("size") String size) throws JSONException {
|
|
606
|
UriComponents uriComponents = UriComponentsBuilder
|
|
607
|
.fromHttpUrl(baseAddress + "/api/baseurl/")
|
|
608
|
.path("/{page}/{size}")
|
|
609
|
.build().expand(page,size).encode();
|
|
610
|
|
|
611
|
try{
|
|
612
|
RequestFilter requestFilter = new RequestFilter();
|
|
613
|
requestFilter.setRegisteredby(userEmail);
|
|
614
|
return Arrays.asList(restTemplate.postForObject(uriComponents.toUri(),requestFilter, String[].class));
|
|
615
|
}catch (Exception e){
|
|
616
|
LOGGER.debug("Exception on addRepositoryInterface" , e);
|
|
617
|
emailUtils.reportException(e);
|
|
618
|
throw e;
|
|
619
|
}
|
|
620
|
}
|
|
621
|
|
|
622
|
@Override
|
|
623
|
public List<String> getDatasourceVocabularies(@PathVariable("mode") String mode) {
|
|
624
|
|
|
625
|
List<String> resultSet = new ArrayList<>();
|
|
626
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
|
627
|
if (mode.equalsIgnoreCase("aggregator")) {
|
|
628
|
if (entry.getKey().contains("aggregator"))
|
|
629
|
resultSet.add(entry.getValue());
|
|
630
|
} else if (mode.equalsIgnoreCase("journal")) {
|
|
631
|
if (entry.getKey().contains("journal"))
|
|
632
|
resultSet.add(entry.getValue());
|
|
633
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
|
634
|
if (entry.getKey().contains("pubsrepository"))
|
|
635
|
resultSet.add(entry.getValue());
|
|
636
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
|
637
|
if (entry.getKey().contains("datarepository"))
|
|
638
|
resultSet.add(entry.getValue());
|
|
639
|
}
|
|
640
|
}
|
|
641
|
|
|
642
|
|
|
643
|
return resultSet;
|
|
644
|
}
|
|
645
|
|
|
646
|
private Vocabulary getVocabulary(String vocName) {
|
|
647
|
|
|
648
|
if (!vocabularyMap.containsKey(vocName)) {
|
|
649
|
vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
|
|
650
|
}
|
|
651
|
return vocabularyMap.get(vocName);
|
|
652
|
}
|
|
653
|
|
|
654
|
|
|
655
|
@Override
|
|
656
|
public Map<String, String> getCompatibilityClasses(@PathVariable("mode") String mode) {
|
|
657
|
|
|
658
|
LOGGER.debug("Getting compatibility classes for mode: " + mode);
|
|
659
|
Map<String, String> retMap = new HashMap<String, String>();
|
|
660
|
|
|
661
|
Map<String, String> compatibilityClasses = this.getVocabulary("dnet:compatibilityLevel").getAsMap();
|
|
662
|
boolean foundData = false;
|
|
663
|
for (Map.Entry<String, String> entry : compatibilityClasses.entrySet()) {
|
|
664
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_ALL))
|
|
665
|
return compatibilityClasses;
|
|
666
|
else if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA)) {
|
|
667
|
if (entry.getKey().matches("^openaire[1-9].0_data$")) {
|
|
668
|
retMap.put(entry.getKey(), entry.getValue());
|
|
669
|
foundData = true;
|
|
670
|
}
|
|
671
|
} else {
|
|
672
|
if (entry.getKey().matches("^openaire[1-9].0$") || entry.getKey().equals("driver"))
|
|
673
|
retMap.put(entry.getKey(), entry.getValue());
|
|
674
|
}
|
|
675
|
}
|
|
676
|
|
|
677
|
//TODO TO BE REMOVED WHEN VOCABULARIES ARE UPDATED
|
|
678
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA) && !foundData)
|
|
679
|
retMap.put("openaire2.0_data", "OpenAIRE Data (funded, referenced datasets)");
|
|
680
|
|
|
681
|
return retMap;
|
|
682
|
}
|
|
683
|
|
|
684
|
@Override
|
|
685
|
public Map<String, String> getDatasourceClasses(@PathVariable("mode") String mode) {
|
|
686
|
|
|
687
|
LOGGER.debug("Getting datasource classes for mode: " + mode);
|
|
688
|
|
|
689
|
Map<String, String> retMap = new HashMap<String, String>();
|
|
690
|
|
|
691
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
|
692
|
if (mode.equalsIgnoreCase("aggregator")) {
|
|
693
|
if (entry.getKey().contains("aggregator"))
|
|
694
|
retMap.put(entry.getKey(), entry.getValue());
|
|
695
|
} else if (mode.equalsIgnoreCase("journal")) {
|
|
696
|
if (entry.getKey().contains("journal"))
|
|
697
|
retMap.put(entry.getKey(), entry.getValue());
|
|
698
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
|
699
|
if (entry.getKey().contains("pubsrepository"))
|
|
700
|
retMap.put(entry.getKey(), entry.getValue());
|
|
701
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
|
702
|
if (entry.getKey().contains("datarepository"))
|
|
703
|
retMap.put(entry.getKey(), entry.getValue());
|
|
704
|
}
|
|
705
|
}
|
|
706
|
return filterResults(retMap,mode);
|
|
707
|
|
|
708
|
}
|
|
709
|
|
|
710
|
private Map<String,String> filterResults(Map<String, String> map,String mode) {
|
|
711
|
|
|
712
|
HashMap<String,String> filteredMap = new HashMap<>();
|
|
713
|
for(String key:map.keySet())
|
|
714
|
if(dataSourceClass.get(mode).contains(key))
|
|
715
|
filteredMap.put(key,map.get(key));
|
|
716
|
|
|
717
|
return filteredMap;
|
|
718
|
}
|
|
719
|
|
|
720
|
@Override
|
|
721
|
public String getCountryName(String countryCode) {
|
|
722
|
return inverseCountriesMap.get(countryCode);
|
|
723
|
}
|
|
724
|
|
|
725
|
@Override
|
|
726
|
public MetricsInfo getMetricsInfoForRepository(@PathVariable("repoId") String repoId) throws RepositoryServiceException {
|
|
727
|
try {
|
|
728
|
|
|
729
|
MetricsInfo metricsInfo = new MetricsInfo();
|
|
730
|
metricsInfo.setDiagramsBaseURL(this.usageStatisticsDiagramsBaseURL);
|
|
731
|
metricsInfo.setMetricsNumbers(getMetricsNumbers(getOpenAIREId(repoId)));
|
|
732
|
return metricsInfo;
|
|
733
|
|
|
734
|
} catch (Exception e) {
|
|
735
|
LOGGER.error("Error while getting metrics info for repository: ", e);
|
|
736
|
emailUtils.reportException(e);
|
|
737
|
throw new RepositoryServiceException("General error", RepositoryServiceException.ErrorCode.GENERAL_ERROR);
|
|
738
|
}
|
|
739
|
}
|
|
740
|
|
|
741
|
@Override
|
|
742
|
public Map<String, String> getListLatestUpdate(@PathVariable("mode") String mode) throws JSONException {
|
|
743
|
if(mode.equals("opendoar"))
|
|
744
|
return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(0).getLastCollectionDate());
|
|
745
|
else
|
|
746
|
/*
|
|
747
|
* first api of re3data has null value on collection date
|
|
748
|
* */
|
|
749
|
return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(1).getLastCollectionDate());
|
|
750
|
}
|
|
751
|
|
|
752
|
@Override
|
|
753
|
public RepositoryInterface updateRepositoryInterface(@RequestParam("repoId") String repoId,
|
|
754
|
@RequestParam("registeredBy") String registeredBy,
|
|
755
|
@RequestBody RepositoryInterface repositoryInterface) throws Exception {
|
|
756
|
|
|
757
|
this.updateBaseUrl(repoId,repositoryInterface.getId(),repositoryInterface.getBaseUrl());
|
|
758
|
this.updateCompliance(repoId,repositoryInterface.getId(),repositoryInterface.getCompliance());
|
|
759
|
this.updateValidationSet(repoId,repositoryInterface.getId(),repositoryInterface.getAccessSet());
|
|
760
|
return repositoryInterface;
|
|
761
|
}
|
|
762
|
|
|
763
|
private void updateValidationSet(String repositoryId, String repositoryInterfaceId, String validationSet) throws Exception {
|
|
764
|
UriComponents uriComponents = UriComponentsBuilder
|
|
765
|
.fromHttpUrl(baseAddress + "/ds/api/oaiset")
|
|
766
|
.queryParam("dsId",repositoryId)
|
|
767
|
.queryParam("apiId",repositoryInterfaceId)
|
|
768
|
.queryParam("oaiSet",validationSet)
|
|
769
|
.build().encode();
|
|
770
|
restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, null, ResponseEntity.class);
|
|
771
|
|
|
772
|
}
|
|
773
|
|
|
774
|
|
|
775
|
private void updateBaseUrl(String repositoryId, String repositoryInterfaceId, String baseUrl) {
|
|
776
|
UriComponents uriComponents = UriComponentsBuilder
|
|
777
|
.fromHttpUrl(baseAddress + "/ds/api/baseurl")
|
|
778
|
.queryParam("dsId",repositoryId)
|
|
779
|
.queryParam("apiId",repositoryInterfaceId)
|
|
780
|
.queryParam("baseUrl",baseUrl)
|
|
781
|
.build().encode();
|
|
782
|
restTemplate.postForObject(uriComponents.toUri(),null,String.class);
|
|
783
|
}
|
|
784
|
|
|
785
|
private void updateCompliance(String repositoryId, String repositoryInterfaceId,String compliance) {
|
|
786
|
UriComponents uriComponents = UriComponentsBuilder
|
|
787
|
.fromHttpUrl(baseAddress + "/ds/api/compliance")
|
|
788
|
.queryParam("dsId",repositoryId)
|
|
789
|
.queryParam("apiId",repositoryInterfaceId)
|
|
790
|
.queryParam("compliance",compliance)
|
|
791
|
.build().encode();
|
|
792
|
restTemplate.postForObject(uriComponents.toUri(),null,String.class);
|
|
793
|
}
|
|
794
|
|
|
795
|
private MetricsNumbers getMetricsNumbers(String openAIREID) throws BrokerException {
|
|
796
|
|
|
797
|
//build the uri params
|
|
798
|
UriComponentsBuilder builder = UriComponentsBuilder.fromHttpUrl(this.usageStatisticsNumbersBaseURL + openAIREID + "/clicks");
|
|
799
|
|
|
800
|
//create new template engine
|
|
801
|
RestTemplate template = new RestTemplate();
|
|
802
|
template.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
|
|
803
|
ResponseEntity<MetricsNumbers> resp;
|
|
804
|
try {
|
|
805
|
//communicate with endpoint
|
|
806
|
resp = template.exchange(
|
|
807
|
builder.build().encode().toUri(),
|
|
808
|
HttpMethod.GET,
|
|
809
|
null,
|
|
810
|
new ParameterizedTypeReference<MetricsNumbers>() {
|
|
811
|
});
|
|
812
|
} catch (RestClientException e) {
|
|
813
|
LOGGER.debug("Exception on getMetricsNumbers" , e);
|
|
814
|
emailUtils.reportException(e);
|
|
815
|
throw e;
|
|
816
|
}
|
|
817
|
|
|
818
|
return resp.getBody();
|
|
819
|
}
|
|
820
|
|
|
821
|
private String getOpenAIREId(String repoId) {
|
|
822
|
|
|
823
|
if (repoId != null && repoId.contains("::")) {
|
|
824
|
return repoId.split("::")[0] + "::" + DigestUtils.md5Hex(repoId.split("::")[1]);
|
|
825
|
}
|
|
826
|
|
|
827
|
return null;
|
|
828
|
}
|
|
829
|
|
|
830
|
private UriComponents searchDatasource(String page,String size){
|
|
831
|
|
|
832
|
return UriComponentsBuilder
|
|
833
|
.fromHttpUrl(baseAddress + "/ds/search/")
|
|
834
|
.path("/{page}/{size}/")
|
|
835
|
.queryParam("requestSortBy","officialname")
|
|
836
|
.queryParam("order","ASCENDING")
|
|
837
|
.build().expand(page, size).encode();
|
|
838
|
}
|
|
839
|
|
|
840
|
private UriComponents searchSnipperDatasource(String page,String size){
|
|
841
|
|
|
842
|
return UriComponentsBuilder
|
|
843
|
.fromHttpUrl(baseAddress + "/ds/searchsnippet/")
|
|
844
|
.path("/{page}/{size}/")
|
|
845
|
.queryParam("requestSortBy","officialname")
|
|
846
|
.queryParam("order","ASCENDING")
|
|
847
|
.build().expand(page, size).encode();
|
|
848
|
}
|
|
849
|
|
|
850
|
private String getRepositoryType(String typology){
|
|
851
|
return invertedDataSourceClass.get(typology);
|
|
852
|
}
|
|
853
|
|
|
854
|
|
|
855
|
}
|