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package eu.dnetlib.data.mapreduce.hbase.statsExport.utils;
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import com.google.common.collect.Multimap;
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import eu.dnetlib.data.mapreduce.util.LicenseComparator;
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import eu.dnetlib.data.proto.DatasourceProtos.Datasource;
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import eu.dnetlib.data.proto.DatasourceProtos.Datasource.Metadata;
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import eu.dnetlib.data.proto.FieldTypeProtos;
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import eu.dnetlib.data.proto.FieldTypeProtos.Qualifier;
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import eu.dnetlib.data.proto.FieldTypeProtos.StringField;
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import eu.dnetlib.data.proto.FieldTypeProtos.StructuredProperty;
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import eu.dnetlib.data.proto.OafProtos.Oaf;
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import eu.dnetlib.data.proto.OafProtos.OafEntity;
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import eu.dnetlib.data.proto.OafProtos.OafRel;
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import eu.dnetlib.data.proto.OrganizationProtos.Organization;
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//import eu.dnetlib.data.proto.PersonProtos;
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import eu.dnetlib.data.proto.ProjectProtos.Project;
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import eu.dnetlib.data.proto.RelTypeProtos.RelType;
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import eu.dnetlib.data.proto.ResultProtos.Result;
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import eu.dnetlib.data.proto.ResultProtos.Result.Instance;
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import org.apache.log4j.Logger;
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import org.jsoup.Jsoup;
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import java.text.DateFormat;
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import java.text.ParseException;
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import java.text.SimpleDateFormat;
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import java.util.ArrayList;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.List;
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import org.w3c.dom.Element;
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import org.w3c.dom.NodeList;
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import org.xml.sax.InputSource;
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import com.sun.org.apache.xerces.internal.parsers.DOMParser;
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import org.w3c.dom.Document;
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/**
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* @author eri Simple serializer that parses input Oaf Protos and prepares them
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* for sqoop
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*/
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public class Serializer {
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private static Logger logger = Logger.getLogger(Serializer.class);
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public static String serialize(Oaf oaf, String DELIM, String ENCLOSING) {
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switch (oaf.getKind()) {
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case entity:
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OafEntity valueEntity = oaf.getEntity();
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switch (valueEntity.getType()) {
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case datasource:
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return buildDatasource(oaf, DELIM, ENCLOSING);
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case organization:
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return buildOrganization(oaf, DELIM, ENCLOSING);
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case project:
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return buildProject(oaf, DELIM, ENCLOSING);
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case result:
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return buildResult(oaf, DELIM, ENCLOSING);
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/*
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case person:
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return buildPerson(oaf, DELIM, ENCLOSING);
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*/
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default:
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break;
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}
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break;
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case relation:
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return buildRel(oaf.getRel(), DELIM, ENCLOSING);
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}
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return null;
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}
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public static String serialize(OafRel oaf, String DELIM, String ENCLOSING) {
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switch (oaf.getRelType()) {
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case resultProject:
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return getResultProject(oaf, DELIM, ENCLOSING);
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default:
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return buildRel(oaf, DELIM, ENCLOSING);
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}
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}
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private static String buildRel(OafRel Rel, String DELIM, String ENCLOSING) {
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return cleanId(Rel.getTarget(), DELIM, ENCLOSING) + DELIM;
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}
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public static void extractRelations(Oaf oaf, String DELIM, String ENCLOSING, Multimap<String, String> relations) {
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OafEntity valueEntity = oaf.getEntity();
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getOriginalId(valueEntity, relations, DELIM, ENCLOSING);
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switch (valueEntity.getType()) {
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case datasource:
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getDatasourceLanguages(valueEntity, relations, DELIM, ENCLOSING);
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// getDatasourceWebsite(valueEntity, relations, DELIM, ENCLOSING);
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case result:
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getResultTopics(valueEntity, relations, DELIM, ENCLOSING);
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getResultLanguages(valueEntity, relations, DELIM, ENCLOSING);
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getResultClassifications(valueEntity, relations, DELIM, ENCLOSING);
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getResultDatasources(valueEntity, relations, DELIM, ENCLOSING);
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getResultConcepts(valueEntity, relations, DELIM, ENCLOSING);
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getResultDois(valueEntity, relations, DELIM, ENCLOSING);
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getResultCitations(valueEntity, relations, DELIM, ENCLOSING);
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// getResultDescriptions(valueEntity, relations, DELIM, ENCLOSING);
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// getResultExtra(valueEntity, relations, DELIM, ENCLOSING);
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case project:
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getProjectKeywords(valueEntity, relations, DELIM, ENCLOSING);
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getProjectSubjects(valueEntity, relations, DELIM, ENCLOSING);
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default:
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}
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}
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private static void getDatasourceWebsite(OafEntity valueEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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Datasource d = valueEntity.getDatasource();
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Metadata metadata = d.getMetadata();
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relations.put("datasourceWebsite", getStringField(metadata.getWebsiteurl().getValue(), DELIM, ENCLOSING));
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}
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private static void getResultExtra(OafEntity valueEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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Result.Metadata metadata = result.getMetadata();
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StringBuilder buff = new StringBuilder();
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String titleString = "";
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for (int i = 0; i < metadata.getTitleList().size(); i++) {
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StructuredProperty title = metadata.getTitleList().get(i);
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titleString = title.getValue().replaceAll("\\s+", " ");
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titleString = titleString.replaceAll("\n", " ");
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break;
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}
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// pubtitle
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buff.append(getStringField(titleString, DELIM, ENCLOSING));
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String sources = "";
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for (Instance instance : (result.getInstanceList())) {
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List<String> urls = instance.getUrlList();
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for (String url : urls) {
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sources += cleanUrl(url, DELIM, ENCLOSING) + " ;";
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}
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}
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//sources
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sources = ENCLOSING + sources + ENCLOSING + DELIM;
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buff.append(sources);
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relations.put("resultExtra", buff.toString());
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}
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private static void getOriginalId(OafEntity oafEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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String relName = oafEntity.getType().toString().toLowerCase() + "Oid";
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for (String oid : oafEntity.getOriginalIdList()) {
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relations.put(relName, cleanId(oid, DELIM, ENCLOSING));
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}
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}
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private static void getProjectKeywords(OafEntity oafEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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relations.put("projectKeyword", getStringField(oafEntity.getProject().getMetadata().getKeywords().getValue(), DELIM, ENCLOSING));
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}
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private static void getProjectSubjects(OafEntity oafEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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for (StructuredProperty subj : oafEntity.getProject().getMetadata().getSubjectsList()) {
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relations.put("projectSubject", getStringField(subj.getValue(), DELIM, ENCLOSING));
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}
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}
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private static String getResultProject(OafRel oaf, String DELIM, String ENCLOSING) {
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StringBuilder buff = new StringBuilder();
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buff.append(cleanId(oaf.getTarget(), DELIM, ENCLOSING) + DELIM);
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// TODO is declared as int!!!
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long diff = DATEDIFF(oaf.getResultProject().getOutcome().getRelMetadata().getEnddate(), oaf.getResultProject().getOutcome().getRelMetadata().getStartdate());
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if (diff < 0) {
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diff = 0;
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}
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buff.append(getNumericField(String.valueOf(diff), DELIM, ENCLOSING));
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return buff.toString();
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}
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private static void getDatasourceLanguages(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Datasource d = valueEntity.getDatasource();
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Metadata metadata = d.getMetadata();
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for (StringField lang : metadata.getOdlanguagesList()) {
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rels.put("datasourceLanguage", getStringField(lang.getValue(), DELIM, ENCLOSING));
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}
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}
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private static void getResultLanguages(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result d = valueEntity.getResult();
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Result.Metadata metadata = d.getMetadata();
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if (metadata.getLanguage().getClassname() != null && !metadata.getLanguage().getClassname().isEmpty()) {
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rels.put("resultLanguage", getStringField(metadata.getLanguage().getClassname(), DELIM, ENCLOSING));
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}
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}
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private static void getResultDois(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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for (StructuredProperty pid : valueEntity.getPidList()) {
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rels.put("resultPid",
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getStringField(pid.getQualifier().getClassname(), DELIM, ENCLOSING) + getStringField(pid.getValue(), DELIM, ENCLOSING));
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}
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}
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private static void getResultClassifications(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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for (Instance instance : (result.getInstanceList())) {
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String classification = instance.getInstancetype().getClassname();
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if (classification != null && !classification.isEmpty()) {
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rels.put("resultClassification", getStringField(instance.getInstancetype().getClassname(), DELIM, ENCLOSING));
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// TODO HERE KEEP ONLY ONE CLASSIFICATIONS PER RESULT
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// break;
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}
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}
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}
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private static void getResultDescriptions(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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//description
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for (StringField s : result.getMetadata().getDescriptionList()) {
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rels.put("resultDescription", getStringField(Jsoup.parse(s.getValue()).text(), DELIM, ENCLOSING));
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}
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}
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private static void getResultConcepts(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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for (Result.Context context : result.getMetadata().getContextList()) {
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rels.put("resultConcept", cleanId(context.getId(), DELIM, ENCLOSING));
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}
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}
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private static void getResultDatasources(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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//TODO hosted by
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for (Instance instance : (result.getInstanceList())) {
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String hostedBy = instance.getHostedby().getKey();
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if (hostedBy != null && !hostedBy.isEmpty()) {
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rels.put("resultDatasource", cleanId(hostedBy, DELIM, ENCLOSING) + DELIM);
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}
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}
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//TODO collected froms
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for (FieldTypeProtos.KeyValue collectedFromValue : (valueEntity.getCollectedfromList())) {
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String collectedFrom = collectedFromValue.getKey();
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if (collectedFrom != null && !collectedFrom.isEmpty()) {
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rels.put("resultDatasource", cleanId(collectedFrom, DELIM, ENCLOSING) + DELIM);
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}
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}
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}
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284
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private static void getResultTopics(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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285
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286
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Result d = valueEntity.getResult();
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Result.Metadata metadata = d.getMetadata();
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288
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289
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List<StructuredProperty> Topics = metadata.getSubjectList();
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290
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291
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for (StructuredProperty topic : Topics) {
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292
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// TODO result topics
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rels.put("resultTopic", getStringField(topic.getValue(), DELIM, ENCLOSING));
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294
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}
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295
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}
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296
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297
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298
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private static void getResultCitations(OafEntity oafEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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299
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for (FieldTypeProtos.ExtraInfo extraInfo : oafEntity.getExtraInfoList()) {
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300
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if (extraInfo.getName().equals("result citations")) {
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301
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DOMParser parser = new DOMParser();
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302
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try {
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303
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parser.parse(new InputSource(new java.io.StringReader(extraInfo.getValue())));
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304
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Document doc = parser.getDocument();
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305
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doc.getDocumentElement().normalize();
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306
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|
307
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NodeList citations = doc.getElementsByTagName("citation");
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308
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for (int temp = 0; temp < citations.getLength(); temp++) {
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309
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Element citation = (Element) citations.item(temp);
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310
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NodeList ids = citation.getElementsByTagName("id");
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311
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for(int temp1 = 0; temp1 < ids.getLength(); temp1++){
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312
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Element id = (Element) ids.item(temp1);
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313
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if(id.getAttribute("type").equals("openaire")){
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314
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//System.out.println(id.getAttribute("value"));
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315
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rels.put("resultCitation", id.getAttribute("value"));
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316
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}
|
317
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}
|
318
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}
|
319
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} catch (Exception e) {
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320
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|
321
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}
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322
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|
323
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/*
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324
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rels.put("resultCitation", getStringField(extraInfo.getTrust(), DELIM, ENCLOSING) +
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325
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getStringField(extraInfo.getProvenance(), DELIM, ENCLOSING) + getStringField(extraInfo.getValue(), DELIM, ENCLOSING));
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326
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*/
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327
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}
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328
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|
329
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}
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330
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}
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331
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|
332
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private static String buildDatasource(Oaf oaf, String DELIM, String ENCLOSING) {
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333
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Metadata metadata = oaf.getEntity().getDatasource().getMetadata();
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334
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StringBuilder buff = new StringBuilder();
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335
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|
336
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// name
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337
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if (metadata.getOfficialname().getValue().equalsIgnoreCase("unknown")) {
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338
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buff.append(getStringField("Unknown Repository", DELIM, ENCLOSING));
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339
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} else {
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340
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buff.append(getStringField(metadata.getOfficialname().getValue(), DELIM, ENCLOSING));
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341
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}
|
342
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|
343
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// type
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344
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if (metadata.hasDatasourcetype()) {
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345
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buff.append(getStringField(metadata.getDatasourcetype().getClassname().replaceFirst(".*::", ""), DELIM, ENCLOSING));
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346
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}
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347
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|
348
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// compatibility,
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349
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buff.append(getStringField(metadata.getOpenairecompatibility().getClassname(), DELIM, ENCLOSING));
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350
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|
351
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// latitude
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352
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buff.append(getLatLongField(metadata.getLatitude().getValue(), DELIM, ENCLOSING));
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353
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354
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// longtitude
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355
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buff.append(getLatLongField(metadata.getLongitude().getValue(), DELIM, ENCLOSING));
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356
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|
357
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// dateofvalidation,
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358
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buff.append(getStringDateField(metadata.getDateofvalidation().getValue(), DELIM, ENCLOSING));
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359
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|
360
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// yearofvalidation,
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361
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buff.append(getYearInt(metadata.getDateofvalidation().getValue(), DELIM, ENCLOSING));
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362
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|
363
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//harvested
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364
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buff.append(getStringField("false", DELIM, ENCLOSING));
|
365
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|
366
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//piwik_id
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367
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String piwik_id = "";
|
368
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for (String oid : oaf.getEntity().getOriginalIdList()) {
|
369
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if (oid.contains("piwik")) {
|
370
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piwik_id = oid.split(":")[1];
|
371
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break;
|
372
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}
|
373
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}
|
374
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buff.append(getStringField(cleanNumber(piwik_id), DELIM, ENCLOSING));
|
375
|
|
376
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return buff.toString();
|
377
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|
378
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}
|
379
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|
380
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private static String buildOrganization(Oaf oaf, String DELIM, String ENCLOSING) {
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381
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|
382
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StringBuilder buff = new StringBuilder();
|
383
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Organization.Metadata metadata = oaf.getEntity().getOrganization().getMetadata();
|
384
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|
385
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// `name`,
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386
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buff.append(getStringField(metadata.getLegalname().getValue(), DELIM, ENCLOSING));
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387
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|
388
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// `country`,
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389
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buff.append(getStringField(metadata.getCountry().getClassid(), DELIM, ENCLOSING));
|
390
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|
391
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return buff.toString();
|
392
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}
|
393
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|
394
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private static String buildResult(Oaf oaf, String DELIM, String ENCLOSING) {
|
395
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StringBuilder buff = new StringBuilder();
|
396
|
|
397
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Result.Metadata metadata = oaf.getEntity().getResult().getMetadata();
|
398
|
|
399
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String titleString = new String();
|
400
|
|
401
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for (int i = 0; i < metadata.getTitleList().size(); i++) {
|
402
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StructuredProperty title = metadata.getTitleList().get(i);
|
403
|
|
404
|
if (i == 0) {
|
405
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titleString = title.getValue().replaceAll("\\s+", " ");
|
406
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titleString = titleString.replaceAll("\n", " ");
|
407
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}
|
408
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break;
|
409
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}
|
410
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|
411
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// pubtitle
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412
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buff.append(getStringField(titleString, DELIM, ENCLOSING));
|
413
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|
414
|
|
415
|
// publisher
|
416
|
buff.append(getStringField(metadata.getPublisher().getValue(), DELIM, ENCLOSING));
|
417
|
|
418
|
// journal
|
419
|
buff.append(getStringField(metadata.getJournal().getName(), DELIM, ENCLOSING)); //#null#!
|
420
|
|
421
|
// year
|
422
|
buff.append(getYearInt(metadata.getDateofacceptance().getValue(), DELIM, ENCLOSING));
|
423
|
|
424
|
// date
|
425
|
buff.append(getStringDateField(metadata.getDateofacceptance().getValue(), DELIM, ENCLOSING));
|
426
|
|
427
|
// bestlicense
|
428
|
buff.append(getStringField(getBestLicense(oaf.getEntity().getResult()), DELIM, ENCLOSING));
|
429
|
|
430
|
// type
|
431
|
buff.append(getStringField(metadata.getResulttype().getClassname(), DELIM, ENCLOSING));
|
432
|
|
433
|
// embargo_end_date
|
434
|
buff.append(getStringDateField(metadata.getEmbargoenddate().getValue(), DELIM, ENCLOSING));
|
435
|
|
436
|
// `authors`,
|
437
|
int authors = metadata.getAuthorCount();
|
438
|
|
439
|
|
440
|
String delayed = "no";
|
441
|
|
442
|
for (OafRel rel : oaf.getEntity().getCachedRelList()) {
|
443
|
|
444
|
/*
|
445
|
if (rel.getRelType().equals(RelType.personResult)) {
|
446
|
|
447
|
authors++;
|
448
|
} else
|
449
|
*/
|
450
|
if (rel.getRelType().equals(RelType.resultProject))
|
451
|
// TODO remember : in result Project, first id is project, second is
|
452
|
// result.
|
453
|
{
|
454
|
String daysfromend = getYearDifferenceInteger(rel.getResultProject().getOutcome().getRelMetadata().getEnddate(),
|
455
|
rel.getResultProject().getOutcome().getRelMetadata().getStartdate(), DELIM, ENCLOSING);
|
456
|
if (Integer.parseInt(daysfromend) > 0) {
|
457
|
delayed = "yes";
|
458
|
}
|
459
|
}
|
460
|
}
|
461
|
|
462
|
// `delayed`,
|
463
|
buff.append(getStringField(delayed, DELIM, ENCLOSING));
|
464
|
//authors
|
465
|
buff.append(getNumericField(String.valueOf(authors), DELIM, ENCLOSING));
|
466
|
|
467
|
String sources = new String();
|
468
|
|
469
|
|
470
|
for (Instance instance : (oaf.getEntity().getResult().getInstanceList())) {
|
471
|
List<String> urls = instance.getUrlList();
|
472
|
for (String url : urls) {
|
473
|
sources += cleanUrl(url, DELIM, ENCLOSING) + " ;";
|
474
|
}
|
475
|
}
|
476
|
|
477
|
//sources
|
478
|
sources = ENCLOSING + sources + ENCLOSING + DELIM;
|
479
|
|
480
|
buff.append(sources);
|
481
|
|
482
|
return buff.toString();
|
483
|
|
484
|
}
|
485
|
|
486
|
|
487
|
/*
|
488
|
private static String getBestLicense(Result result) {
|
489
|
Qualifier bestLicense = null;
|
490
|
LicenseComparator lc = new LicenseComparator();
|
491
|
for (Instance instance : (result.getInstanceList())) {
|
492
|
if (lc.compare(bestLicense, instance.getLicence()) > 0) {
|
493
|
bestLicense = instance.getLicence();
|
494
|
}
|
495
|
}
|
496
|
if (bestLicense != null) {
|
497
|
return bestLicense.getClassname();
|
498
|
} else {
|
499
|
return null;
|
500
|
}
|
501
|
}
|
502
|
|
503
|
// TODO here iterate over all values
|
504
|
private static String getAccessMode(Result result) {
|
505
|
String accessMode = " ";
|
506
|
for (Instance instance : (result.getInstanceList())) {
|
507
|
if (instance.getLicence().getClassname() != null && !instance.getLicence().getClassname().isEmpty()) {
|
508
|
accessMode = instance.getLicence().getClassname();
|
509
|
break;
|
510
|
}
|
511
|
|
512
|
}
|
513
|
|
514
|
return accessMode;
|
515
|
}
|
516
|
*/
|
517
|
|
518
|
private static String getBestLicense(Result result) {
|
519
|
Qualifier bestLicense = null;
|
520
|
LicenseComparator lc = new LicenseComparator();
|
521
|
for (Instance instance : (result.getInstanceList())) {
|
522
|
if (lc.compare(bestLicense, instance.getAccessright()) > 0) {
|
523
|
bestLicense = instance.getAccessright();
|
524
|
}
|
525
|
}
|
526
|
if (bestLicense != null) {
|
527
|
return bestLicense.getClassname();
|
528
|
} else {
|
529
|
return "";
|
530
|
}
|
531
|
}
|
532
|
|
533
|
// TODO here iterate over all values
|
534
|
private static String getAccessMode(Result result) {
|
535
|
String accessMode = " ";
|
536
|
for (Instance instance : (result.getInstanceList())) {
|
537
|
if (instance.getAccessright().getClassname() != null && !instance.getAccessright().getClassname().isEmpty()) {
|
538
|
accessMode = instance.getAccessright().getClassname();
|
539
|
break;
|
540
|
}
|
541
|
|
542
|
}
|
543
|
|
544
|
return accessMode;
|
545
|
}
|
546
|
|
547
|
private static String buildProject(Oaf oaf, String DELIM, String ENCLOSING) {
|
548
|
|
549
|
StringBuilder buff = new StringBuilder();
|
550
|
Project.Metadata metadata = oaf.getEntity().getProject().getMetadata();
|
551
|
|
552
|
// `acronym`,
|
553
|
String acronym = metadata.getAcronym().getValue();
|
554
|
if (acronym.equalsIgnoreCase("UNKNOWN")) {
|
555
|
acronym = metadata.getTitle().getValue();
|
556
|
}
|
557
|
buff.append(getStringField(acronym, DELIM, ENCLOSING));
|
558
|
|
559
|
//title
|
560
|
buff.append(getStringField(metadata.getTitle().getValue(), DELIM, ENCLOSING));
|
561
|
|
562
|
//funding_lvl
|
563
|
List<StringField> fundList = metadata.getFundingtreeList();
|
564
|
if (!fundList.isEmpty()) // `funding_lvl0`,
|
565
|
{
|
566
|
//TODO funder + 3 funding levels
|
567
|
/* funder text,
|
568
|
funding_lvl0 text,
|
569
|
funding_lvl1 text,
|
570
|
funding_lvl2 text,
|
571
|
funding_lvl3 text,*/
|
572
|
buff.append(FundingParser.getFundingInfo(fundList.get(0).getValue(), DELIM, ENCLOSING));
|
573
|
} else {
|
574
|
buff.append(FundingParser.getFundingInfo("", DELIM, ENCLOSING));
|
575
|
}
|
576
|
|
577
|
//sc39
|
578
|
String sc39 = metadata.getEcsc39().getValue().toString();
|
579
|
if (sc39.equalsIgnoreCase("true") || sc39.equalsIgnoreCase("t") || sc39.contains("yes")) {
|
580
|
sc39 = "yes";
|
581
|
} else if (sc39.equalsIgnoreCase("false") || sc39.equalsIgnoreCase("f") || sc39.contains("no")) {
|
582
|
sc39 = "no";
|
583
|
}
|
584
|
buff.append(getStringField(sc39, DELIM, ENCLOSING));
|
585
|
|
586
|
//project_type
|
587
|
buff.append(getStringField(metadata.getContracttype().getClassid(),DELIM, ENCLOSING));
|
588
|
|
589
|
// start_year
|
590
|
buff.append(getYearInt(metadata.getStartdate().getValue(), DELIM, ENCLOSING));
|
591
|
|
592
|
// end_year
|
593
|
buff.append(getYearInt(metadata.getEnddate().getValue(), DELIM, ENCLOSING));
|
594
|
|
595
|
// duration enddate-startdate
|
596
|
buff.append(getYearDifferenceInteger(metadata.getEnddate().getValue(), metadata.getStartdate().getValue(), DELIM, ENCLOSING));
|
597
|
|
598
|
// haspubs
|
599
|
buff.append(getStringField("no", DELIM, ENCLOSING));
|
600
|
|
601
|
// numpubs
|
602
|
buff.append(getNumericField("0", DELIM, ENCLOSING));
|
603
|
|
604
|
// enddate
|
605
|
buff.append(getStringDateField(metadata.getEnddate().getValue(), DELIM, ENCLOSING));
|
606
|
|
607
|
// startdate
|
608
|
buff.append(getStringDateField(metadata.getStartdate().getValue(), DELIM, ENCLOSING));
|
609
|
|
610
|
// `daysforlastpub`,
|
611
|
buff.append(getNumericField("", DELIM, ENCLOSING));
|
612
|
|
613
|
// `delayedpubs`,
|
614
|
buff.append(getNumericField("", DELIM, ENCLOSING));
|
615
|
|
616
|
//call identifier
|
617
|
buff.append(getStringField(metadata.getCallidentifier().getValue(), DELIM, ENCLOSING));
|
618
|
|
619
|
//code
|
620
|
buff.append(getStringField(metadata.getCode().getValue(), DELIM, ENCLOSING));
|
621
|
|
622
|
return buff.toString();
|
623
|
|
624
|
}
|
625
|
|
626
|
/*
|
627
|
private static String buildPerson(Oaf oaf, String DELIM, String ENCLOSING) {
|
628
|
StringBuilder buff = new StringBuilder();
|
629
|
|
630
|
PersonProtos.Person.Metadata metadata = oaf.getEntity().getPerson().getMetadata();
|
631
|
|
632
|
// `person_id`,
|
633
|
//buff.append(cleanId(oaf.getEntity().getId(), DELIM, ENCLOSING) + DELIM);
|
634
|
|
635
|
|
636
|
// person_result
|
637
|
buff.append(cleanId(oaf.getEntity().getId(), DELIM, ENCLOSING) + DELIM);
|
638
|
|
639
|
|
640
|
//firstName
|
641
|
buff.append(getStringField(metadata.getFirstname().getValue(), DELIM, ENCLOSING));
|
642
|
|
643
|
//LastName
|
644
|
|
645
|
String secondName = new String();
|
646
|
for (StringField s : metadata.getSecondnamesList()) {
|
647
|
secondName += s.getValue().replace("\n", " ").replace(",", " ") + " ";
|
648
|
}
|
649
|
|
650
|
buff.append(getStringField(secondName, DELIM, ENCLOSING));
|
651
|
|
652
|
// `fullname`,
|
653
|
buff.append(getStringField(metadata.getFullname().getValue(), DELIM, ENCLOSING));
|
654
|
|
655
|
// `Nationality`,
|
656
|
buff.append(getStringField(metadata.getNationality().getClassid(), DELIM, ENCLOSING));
|
657
|
|
658
|
// `Email`,
|
659
|
buff.append(getStringField(metadata.getEmail().getValue(), DELIM, ENCLOSING));
|
660
|
|
661
|
// `Phone`,
|
662
|
buff.append(getStringField(metadata.getPhone().getValue(), DELIM, ENCLOSING));
|
663
|
|
664
|
//deletedByInference
|
665
|
|
666
|
buff.append(getStringField(String.valueOf(oaf.getDataInfo().getDeletedbyinference()), DELIM, ENCLOSING));
|
667
|
|
668
|
// `number`,
|
669
|
buff.append(getStringField("1", DELIM, ENCLOSING));
|
670
|
|
671
|
return buff.toString();
|
672
|
|
673
|
}
|
674
|
*/
|
675
|
|
676
|
|
677
|
private static String getYearDifferenceInteger(String enddate, String startdate, String DELIM, String ENCLOSING) {
|
678
|
|
679
|
if (enddate != null && !enddate.isEmpty() && startdate != null && !startdate.isEmpty()) {
|
680
|
|
681
|
String[] split = startdate.split("-");
|
682
|
|
683
|
if (split == null || split.length == 0) {
|
684
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
685
|
}
|
686
|
|
687
|
int Startdate = Integer.parseInt(split[0]);
|
688
|
|
689
|
split = enddate.split("-");
|
690
|
|
691
|
if (split == null || split.length == 0) {
|
692
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
693
|
}
|
694
|
|
695
|
int Enddate = Integer.parseInt(split[0]);
|
696
|
|
697
|
int diff = Enddate - Startdate;
|
698
|
|
699
|
return ENCLOSING + diff + ENCLOSING + DELIM;
|
700
|
|
701
|
}
|
702
|
|
703
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
704
|
}
|
705
|
|
706
|
private static String getYearInt(String data, String DELIM, String ENCLOSING) {
|
707
|
if (data == null || data.isEmpty() || data.equals("-1")) {
|
708
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
709
|
}
|
710
|
|
711
|
String[] split = data.split("-");
|
712
|
|
713
|
if (split == null || split.length == 0) {
|
714
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
715
|
}
|
716
|
|
717
|
String year = split[0];
|
718
|
|
719
|
year = cleanNumber(year);
|
720
|
|
721
|
if (year == null || year.isEmpty()) year = "0";
|
722
|
|
723
|
return ENCLOSING + year + ENCLOSING + DELIM;
|
724
|
|
725
|
}
|
726
|
|
727
|
private static String cleanNumber(String number) {
|
728
|
number = number.replaceAll("[^A-Za-z0-9:,____]", "");
|
729
|
return number;
|
730
|
}
|
731
|
|
732
|
private static String getLatLongField(String data, String DELIM, String ENCLOSING) {
|
733
|
|
734
|
if (data == null || data.isEmpty()) return ENCLOSING + "null" + ENCLOSING + DELIM;
|
735
|
|
736
|
return ENCLOSING + data.replaceAll("[^-0-9.]+", "") + ENCLOSING + DELIM;
|
737
|
|
738
|
}
|
739
|
|
740
|
private static String getStringField(String data, String DELIM, String ENCLOSING) {
|
741
|
|
742
|
if (data == null || data.isEmpty()) return ENCLOSING + "null" + ENCLOSING + DELIM;
|
743
|
|
744
|
return ENCLOSING + clean(data, DELIM, ENCLOSING) + ENCLOSING + DELIM;
|
745
|
|
746
|
}
|
747
|
|
748
|
private static String getStringDateField(String data, String DELIM, String ENCLOSING) {
|
749
|
if (data == null || data.isEmpty() || data.equals("") || data.equals("-1")) {
|
750
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
751
|
} else {
|
752
|
data = data.replace(DELIM, " ");
|
753
|
data = data.replace(ENCLOSING, " ");
|
754
|
data = data.replaceAll("\\r\\n|\\r|\\n", "");
|
755
|
try {
|
756
|
DateFormat format = new SimpleDateFormat("yyyy-MM-dd");
|
757
|
data = format.format(format.parse(data));
|
758
|
return ENCLOSING + data + ENCLOSING + DELIM;
|
759
|
} catch (ParseException e) {
|
760
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
761
|
}
|
762
|
}
|
763
|
}
|
764
|
|
765
|
private static String getNumericField(String data, String DELIM, String ENCLOSING) {
|
766
|
if (data == null || data.isEmpty() || data.equals("")) {
|
767
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
768
|
} else {
|
769
|
return ENCLOSING + data + ENCLOSING + DELIM;
|
770
|
}
|
771
|
}
|
772
|
|
773
|
public static String getId(Oaf oaf, String DELIM, String ENCLOSING) {
|
774
|
switch (oaf.getKind()) {
|
775
|
case entity:
|
776
|
return cleanId(oaf.getEntity().getId(), DELIM, ENCLOSING);
|
777
|
case relation:
|
778
|
return cleanId(oaf.getRel().getSource(), DELIM, ENCLOSING);
|
779
|
|
780
|
}
|
781
|
return null;
|
782
|
|
783
|
}
|
784
|
|
785
|
public static String getId(OafRel relOaf, String DELIM, String ENCLOSING) {
|
786
|
return cleanId(relOaf.getSource(), DELIM, ENCLOSING);
|
787
|
}
|
788
|
|
789
|
public static String clean(String value, String DELIM, String ENCLOSING) {
|
790
|
if (value != null) {
|
791
|
|
792
|
value = value.replaceAll("[\"\\r\\\\;]", "");
|
793
|
value = value.replace(DELIM, " ");
|
794
|
value = value.replace(ENCLOSING, " ");
|
795
|
value = value.replaceAll("\\r\\n|\\r|\\n", " ");
|
796
|
//value = value.replace("\"", "");
|
797
|
//value = value.replace("'", "");
|
798
|
//value = value.replace("«", " ");
|
799
|
//value = value.replace("»", " ");
|
800
|
|
801
|
//value = value.replaceAll("[^a-zA-Z0-9 .-_:/!@+=]+", " ");
|
802
|
|
803
|
return value;
|
804
|
|
805
|
} else {
|
806
|
return "";
|
807
|
|
808
|
}
|
809
|
|
810
|
}
|
811
|
|
812
|
public static String cleanId(String value, String DELIM, String ENCLOSING) {
|
813
|
if (value != null) {
|
814
|
// TODO DO NOT CHANGE THIS: IT REMOVES ID PREFIX ( 5|datacite____::
|
815
|
|
816
|
// to datacite____:: )
|
817
|
// AND REPLACES OCCURENCES OF DELIM CHARS IN DATA
|
818
|
value = value.replaceFirst(".*\\|", "");
|
819
|
value = value.replace("\n", "");
|
820
|
value = value.replace(ENCLOSING, "");
|
821
|
value = value.replace(DELIM, "");
|
822
|
value = value.replace("\"", "");
|
823
|
value = value.replace("«", " ");
|
824
|
value = value.replace("»", " ");
|
825
|
}
|
826
|
|
827
|
return ENCLOSING + value + ENCLOSING;
|
828
|
|
829
|
}
|
830
|
|
831
|
|
832
|
public static String cleanUrl(String value, String DELIM, String ENCLOSING) {
|
833
|
value = value.replace(DELIM, " ");
|
834
|
value = value.replace(ENCLOSING, " ");
|
835
|
value = value.replace(" ", "");
|
836
|
value = value.replace("\n", "");
|
837
|
return value;
|
838
|
}
|
839
|
|
840
|
|
841
|
public static long DATEDIFF(String startDate, String endDate) {
|
842
|
long MILLISECS_PER_DAY = 24 * 60 * 60 * 1000;
|
843
|
long days = 0l;
|
844
|
SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd"); // "dd/MM/yyyy HH:mm:ss");
|
845
|
// <startdate>2011-09-01</startdate>
|
846
|
// <enddate>2015-08-31</enddate>
|
847
|
Date dateIni = null;
|
848
|
Date dateFin = null;
|
849
|
|
850
|
if (startDate == null || startDate.isEmpty() || endDate == null || endDate.isEmpty()) {
|
851
|
return 0;
|
852
|
}
|
853
|
try {
|
854
|
dateIni = (Date) format.parse(startDate);
|
855
|
dateFin = (Date) format.parse(endDate);
|
856
|
days = (dateFin.getTime() - dateIni.getTime()) / MILLISECS_PER_DAY;
|
857
|
} catch (Exception e) {
|
858
|
|
859
|
return 0;
|
860
|
}
|
861
|
|
862
|
return days;
|
863
|
}
|
864
|
|
865
|
|
866
|
}
|