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package eu.dnetlib.data.mapreduce.hbase.dataexport;
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import com.google.common.base.Joiner;
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import com.google.gson.Gson;
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import com.googlecode.protobuf.format.JsonFormat;
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import eu.dnetlib.data.mapreduce.util.OafDecoder;
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import eu.dnetlib.data.proto.OafProtos;
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import eu.dnetlib.dhp.schema.oaf.Oaf;
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import eu.dnetlib.dhp.schema.util.ProtoConverter;
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import eu.dnetlib.dhp.schema.util.ProtoUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.hadoop.hbase.client.Result;
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import org.apache.hadoop.hbase.io.ImmutableBytesWritable;
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import org.apache.hadoop.hbase.mapreduce.TableMapper;
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import org.apache.hadoop.io.Text;
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import java.io.IOException;
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import java.util.Map;
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import java.util.Map.Entry;
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import java.util.NavigableMap;
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/**
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* Exports Oaf objects as their json serialization.
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*
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* @author claudio
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*
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*/
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public class ExportInformationSpaceMapper2DHP extends TableMapper<Text, Text> {
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/**
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* logger.
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*/
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private static final Log log = LogFactory.getLog(ExportInformationSpaceMapper2DHP.class);
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private Text keyOut;
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private Text valueOut;
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private Gson g;
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@Override
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protected void setup(final Context context) throws IOException, InterruptedException {
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super.setup(context);
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keyOut = new Text();
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valueOut = new Text();
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g = new Gson();
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}
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@Override
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protected void map(final ImmutableBytesWritable keyIn, final Result value, final Context context) throws IOException, InterruptedException {
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try {
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Map<byte[], NavigableMap<byte[], byte[]>> row = value.getNoVersionMap();
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for (byte[] cf : row.keySet()) {
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for (Entry<byte[], byte[]> q : row.get(cf).entrySet()) {
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final OafProtos.Oaf oaf = OafDecoder.decode(q.getValue()).getOaf();
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Oaf result = null;
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try {
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result = ProtoConverter.convert(JsonFormat.printToString(oaf));
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} catch (Throwable e) {
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context.getCounter("Convert", "error" ).increment(1);
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}
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if (result != null) {
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emit(result.getClass().getName(), result, context);
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}
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}
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}
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} catch (final Throwable e) {
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log.error("error exporting the following record from HBase: " + value.toString(), e);
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context.getCounter("error", e.getClass().getName()).increment(1);
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throw new RuntimeException(e);
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}
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}
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private void emit(final String type, final Oaf result, final Context context) throws IOException, InterruptedException {
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keyOut.set(type);
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valueOut.set(g.toJson(result));
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context.write(keyOut, valueOut);
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}
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}
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