D-Net

package eu.dnetlib.data.mapreduce.hbase.dataexport;

import com.fasterxml.jackson.databind.ObjectMapper;

import com.googlecode.protobuf.format.JsonFormat;

import eu.dnetlib.data.proto.OafProtos;

import eu.dnetlib.dhp.schema.oaf.*;

import org.apache.commons.io.IOUtils;

import org.junit.Test;

import java.io.IOException;

import static org.junit.Assert.assertNotNull;

import static org.junit.Assert.assertTrue;

public class ProtoConverterTest {

    @Test

    public void convertDatasourceTest() throws Exception {

        Oaf result = getOaf("/eu/dnetlib/data/mapreduce/hbase/dataexport/datasource.json");

        assertNotNull(result);

        assertTrue(result instanceof Datasource);

        Datasource ds = (Datasource) result;

        assertNotNull(ds.getId());

        System.out.println(ds.getId());

        ObjectMapper mapper = new ObjectMapper();

        System.out.println(mapper.writeValueAsString(result));

    }

    @Test

    public void convertOrganizationTest() throws Exception {

        Oaf result = getOaf("/eu/dnetlib/data/mapreduce/hbase/dataexport/organization.json");

        assertNotNull(result);

        assertTrue(result instanceof Organization);

        Organization ds = (Organization) result;

        assertNotNull(ds.getId());

        System.out.println(ds.getId());

        ObjectMapper mapper = new ObjectMapper();

        System.out.println(mapper.writeValueAsString(result));

    }

    @Test

    public void convertPublicationTest() throws Exception {

        Oaf result = getOaf("/eu/dnetlib/data/mapreduce/hbase/dataexport/publication.json");

        assertNotNull(result);

        assertTrue(result instanceof Publication);

        Publication p = (Publication) result;

        ObjectMapper mapper = new ObjectMapper();

        System.out.println(mapper.writeValueAsString(p));

    }

    @Test

    public void convertDatasetTest() throws Exception {

        Oaf result = getOaf("/eu/dnetlib/data/mapreduce/hbase/dataexport/dataset.json");

        assertNotNull(result);

        assertTrue(result instanceof Dataset);

        Dataset d = (Dataset) result;

        ObjectMapper mapper = new ObjectMapper();

        System.out.println(mapper.writeValueAsString(d));

    }

    @Test

    public void convertORPTest() throws Exception {

        Oaf result = getOaf("/eu/dnetlib/data/mapreduce/hbase/dataexport/orp.json");

        assertNotNull(result);

        assertTrue(result instanceof OtherResearchProduct);

        OtherResearchProduct orp = (OtherResearchProduct) result;

        ObjectMapper mapper = new ObjectMapper();

        System.out.println(mapper.writeValueAsString(orp));

    }

    @Test

    public void convertSoftware() throws Exception {

        Oaf result = getOaf("/eu/dnetlib/data/mapreduce/hbase/dataexport/software.json");

        assertNotNull(result);

        assertTrue(result instanceof Software);

        Software s = (Software) result;

        ObjectMapper mapper = new ObjectMapper();

        System.out.println(mapper.writeValueAsString(s));

    }

    private Oaf getOaf(String s2) throws IOException {

        final String json = IOUtils.toString(this.getClass().getResourceAsStream(s2));

        final OafProtos.Oaf.Builder b = OafProtos.Oaf.newBuilder();

        JsonFormat.merge(json, b);

        return ProtoConverter.convert(b.build());

    }

}

{"kind": "entity","entity": {"type": "result","result": {"metadata": {"title": [{"value": "SILK PRINTING WITH RECENT DEVELOPMENTS","qualifier": {"classid": "main title","classname": "main title","schemeid": "dnet:dataCite_title","schemename": "dnet:dataCite_title"}},{"value": "Son Gelişmelerle İpek Baskıcılığı","qualifier": {"classid": "main title","classname": "main title","schemeid": "dnet:dataCite_title","schemename": "dnet:dataCite_title"}}],"dateofacceptance": {"value": "1987-06-01"},"publisher": {"value": "Tekstil Mühendisleri Odası"},"resulttype": {"classid": "publication","classname": "publication","schemeid": "dnet:result_typologies","schemename": "dnet:result_typologies"},"language": {"classid": "tur","classname": "Turkish","schemeid": "dnet:languages","schemename": "dnet:languages"},"journal": {"name": "Tekstil ve Mühendis","issnPrinted": "1300-7599"},"format": [{"value": "application/pdf"},{"value": "application/pdf"}],"description": [{"value": " "},{"value": " "}],"source": [{"value": "Tekstil ve Mühendis; Yıl: 1987 Cilt: 1 Sayı: 4"},{"value": "2147-0510"},{"value": "1300-7599"}],"author": [{"fullname": "YAKARTEPE, Mehmet","name": "Mehmet","surname": "Yakartepe","rank": 1},{"fullname": "YAKARTEPE, Zerrin","name": "Zerrin","surname": "Yakartepe","rank": 2}]},"instance": [{"accessright": {"classid": "OPEN","classname": "Open Access","schemeid": "dnet:access_modes","schemename": "dnet:access_modes"},"instancetype": {"classid": "0001","classname": "Article","schemeid": "dnet:publication_resource","schemename": "dnet:publication_resource"},"hostedby": {"key": "10|tubitakulakb::34a91944da68f59ebc51994b4db64cda","value": "Tekstil ve Mühendis"},"url": ["http://dergi.tekstilvemuhendis.org.tr/article/view/5000000711"],"collectedfrom": {"key": "10|openaire____::85e51732975595215ae3c2514e272ce6","value": "TÜBİTAK ULAKBİM DergiPark"},"dateofacceptance": {"value": "1987-06-01"}}]},"originalId": ["oai:dergipark.ulakbim.gov.tr:record/124507"],"collectedfrom": [{"key": "10|openaire____::85e51732975595215ae3c2514e272ce6","value": "TÜBİTAK ULAKBİM DergiPark"}],"dateofcollection": "2019-07-29T15:35:19Z","id": "50|tubitakulakb::7fe767f5f1dfd5bbe0a3e5e9b2a10cc9","dateoftransformation": "","oaiprovenance": {"originDescription": {"harvestDate": "2018-10-13T09:48:19.806Z","altered": true,"baseURL": "http://dergipark.ulakbim.gov.tr/v2/harvester/index.php/oai","identifier": "oai:dergipark.ulakbim.gov.tr:record/124507","datestamp": "2018-10-13T09:48:19Z","metadataNamespace": "http://www.openarchives.org/OAI/2.0/oai_dc/"}}},"dataInfo": {"inferred": true,"deletedbyinference": true,"trust": "0.9","inferenceprovenance": "dedup-similarity-result-levenstein","provenanceaction": {"classid": "sysimport:crosswalk:repository","classname": "sysimport:crosswalk:repository","schemeid": "dnet:provenanceActions","schemename": "dnet:provenanceActions"},"invisible": false}}

{

  "kind": "entity",

  "entity": {

    "type": "datasource",

    "datasource": {

      "metadata": {

        "officialname": {

          "value": "CRIS UNS (Current Research Information System University of Novi Sad)"

        },

        "englishname": {

          "value": "CRIS UNS (Current Research Information System University of Novi Sad)"

        },

        "websiteurl": {

          "value": "https://cris.uns.ac.rs/"

        },

        "accessinfopackage": [

          {

            "value": "https://cris.uns.ac.rs/OAIHandlerOpenAIRECRIS"

          }

        ],

        "namespaceprefix": {

          "value": "CrisUnsNoviS"

        },

        "datasourcetype": {

          "classid": "crissystem",

          "classname": "CRIS System",

          "schemeid": "dnet:datasource_typologies",

          "schemename": "dnet:datasource_typologies"

        },

        "openairecompatibility": {

          "classid": "openaire-cris_1.1",

          "classname": "OpenAIRE CRIS v1.1",

          "schemeid": "dnet:datasourceCompatibilityLevel",

          "schemename": "dnet:datasourceCompatibilityLevel"

        },

        "latitude": {

          "value": "0.0"

        },

        "longitude": {

          "value": "0.0"

        },

        "journal": {

          "issnPrinted": "",

          "issnOnline": "",

          "issnLinking": ""

        }

      }

    },

    "originalId": [

      "CRIS_UNS____::openaire"

    ],

    "collectedfrom": [

      {

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        "value": ""

      }

    ],

    "dateofcollection": "2019-04-04",

    "id": "10|CRIS_UNS____::f66f1bd369679b5b077dcdf006089556",

    "dateoftransformation": ""

  },

  "dataInfo": {

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    "trust": "0.9",

    "provenanceaction": {

      "classid": "sysimport:crosswalk:entityregistry",

      "classname": "sysimport:crosswalk:entityregistry",

      "schemeid": "dnet:provenance_actions",

      "schemename": "dnet:provenance_actions"

    }

  }

}

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To search their archives and sign-up for them, please visit the following URLs:\n\nDiscussion: http://lists.idyll.org/listinfo/khmer\nAnnouncements: http://lists.idyll.org/listinfo/khmer-announce\nWe chat at https://gitter.im/dib-lab/khmer and the maintainers can be contacted at khmer-project@idyll.org.\n\nFor getting help with please see this guide: http://khmer.readthedocs.org/user/getting-help.html\n\nIMPORTANT NOTE: CITE US!\n\nkhmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.\n\nINSTALL INSTRUCTIONS:\n\nkhmer requires a 64-bit operating system and Python 2.7.x. Linux users will need the Python development libraries and gcc. 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{

  "kind": "entity",

  "entity": {

    "type": "organization",

    "organization": {

      "metadata": {

        "legalname": {

          "value": "University of Utrecht"

        },

        "eclegalbody": {

          "value": "false"

        },

        "eclegalperson": {

          "value": "false"

        },

        "ecnonprofit": {

          "value": "false"

        },

        "ecresearchorganization": {

          "value": "false"

        },

        "echighereducation": {

          "value": "false"

        },

        "ecinternationalorganizationeurinterests": {

          "value": "false"

        },

        "ecinternationalorganization": {

          "value": "false"

        },

        "ecenterprise": {

          "value": "false"

        },

        "ecsmevalidated": {

          "value": "false"

        },

        "ecnutscode": {

          "value": "false"

        },

        "country": {

          "classid": "FI",

          "classname": "Finland",

          "schemeid": "dnet:countries",

          "schemename": "dnet:countries"

        }

      }

    },

    "originalId": [

      "aka_________::f88cc5f874ff27f0fd6e7cb24842e9fb"

    ],

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      {

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        "value": "Academy of Finland"

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  },

  "dataInfo": {

    "inferred": true,

    "deletedbyinference": true,

    "trust": "0.9",

    "inferenceprovenance": "dedup-similarity-organization-simple",

    "provenanceaction": {

      "classid": "sysimport:crosswalk:entityregistry",

      "classname": "sysimport:crosswalk:entityregistry",

      "schemeid": "dnet:provenance_actions",

      "schemename": "dnet:provenance_actions"

    }

  }

}

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        software.setCodeRepositoryUrl(mapStringField(m.getCodeRepositoryUrl()));

        software.setProgrammingLanguage(mapQualifier(m.getProgrammingLanguage()));

    private static OtherResearchProduct createORP(OafProtos.Oaf oaf) {

        OtherResearchProduct otherResearchProducts = setOaf(new OtherResearchProduct(), oaf);

        dataset.setStoragedate(mapStringField(m.getStoragedate()));

        dataset.setDevice(mapStringField(m.getDevice()));

        dataset.setSize(mapStringField(m.getSize()));

        dataset.setVersion(mapStringField(m.getVersion()));

        dataset.setLastmetadataupdate(mapStringField(m.getLastmetadataupdate()));

        dataset.setMetadataversionnumber(mapStringField(m.getMetadataversionnumber()));

        entity.setLanguage(mapQualifier(m.getLanguage()));

        entity.setDateofacceptance(mapStringField(m.getDateofacceptance()));

        entity.setPublisher(mapStringField(m.getPublisher()));

        entity.setEmbargoenddate(mapStringField(m.getEmbargoenddate()));

        entity.setResourcetype(mapQualifier(m.getResourcetype()));

			<version>[1.0.0,2.0.0)</version>