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package eu.dnetlib.repo.manager.service;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.api.functionality.ValidatorServiceException;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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import eu.dnetlib.domain.enabling.Vocabulary;
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import eu.dnetlib.domain.functionality.validator.JobForValidation;
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import eu.dnetlib.repo.manager.domain.*;
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import eu.dnetlib.repo.manager.exception.ResourceNotFoundException;
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import eu.dnetlib.repo.manager.utils.Converter;
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import gr.uoa.di.driver.enabling.vocabulary.VocabularyLoader;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.log4j.Logger;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.json.JSONObject;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.core.ParameterizedTypeReference;
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import org.springframework.http.*;
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import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
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import org.springframework.security.core.Authentication;
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import org.springframework.security.core.context.SecurityContextHolder;
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import org.springframework.stereotype.Service;
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import org.springframework.web.client.RestClientException;
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import org.springframework.web.client.RestTemplate;
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import org.springframework.web.util.UriComponents;
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import org.springframework.web.util.UriComponentsBuilder;
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import javax.annotation.PostConstruct;
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import java.io.IOException;
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import java.sql.Timestamp;
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import java.util.*;
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import java.util.concurrent.ConcurrentHashMap;
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import java.util.stream.Collectors;
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@Service("repositoryService")
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public class RepositoryServiceImpl implements RepositoryService {
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    @Value("${api.baseAddress}")
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    private String baseAddress;
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    @Value("${services.repo-manager.adminEmail}")
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    private String adminEmail;
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    @Autowired
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    RestTemplate restTemplate;
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    private HttpHeaders httpHeaders;
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    private final String[] vocabularyNames = {"dnet:countries", "dnet:datasource_typologies", "dnet:compatibilityLevel"};
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    private static final Logger LOGGER = Logger.getLogger(RepositoryServiceImpl.class);
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    @Value("${services.repomanager.usageStatisticsDiagramsBaseURL}")
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    private String usageStatisticsDiagramsBaseURL;
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    @Value("${services.repomanager.usageStatisticsNumbersBaseURL}")
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    private String usageStatisticsNumbersBaseURL;
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    @Autowired
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    private VocabularyLoader vocabularyLoader;
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    @Autowired
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    private PiWikService piWikService;
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    @Autowired
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    private EmailUtils emailUtils;
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    @Autowired
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    ValidatorService validatorService;
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    private Map<String, Vocabulary> vocabularyMap = new ConcurrentHashMap<>();
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    private Map<String, String> countriesMap = new HashMap<>();
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    private Map<String, String> inverseCountriesMap = new HashMap<>();
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    private static Map<String,List<String>> dataSourceClass = new HashMap<>();
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    private static Map<String,String> invertedDataSourceClass = new HashMap<>();
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    @PostConstruct
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    private void init() {
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        LOGGER.debug("Initialization method of repository api!");
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        LOGGER.debug("Updated version!");
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        dataSourceClass.put("opendoar",Arrays.asList("pubsrepository::institutional","pubsrepository::thematic","pubsrepository::unknown","pubsrepository::mock"));
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        dataSourceClass.put("re3data", Collections.singletonList("datarepository::unknown"));
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        dataSourceClass.put("journal", Collections.singletonList("pubsrepository::journal"));
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        dataSourceClass.put("aggregator",Arrays.asList("aggregator::pubsrepository::institutional","aggregator::pubsrepository::journals","aggregator::datarepository", "aggregator::pubsrepository::unknown"));
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        invertedDataSourceClass.put("pubsrepository::institutional","opendoar");
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        invertedDataSourceClass.put("pubsrepository::thematic","opendoar");
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        invertedDataSourceClass.put("pubsrepository::unknown","opendoar");
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        invertedDataSourceClass.put("pubsrepository::mock","opendoar");
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        invertedDataSourceClass.put("datarepository::unknown","re3data");
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        invertedDataSourceClass.put("pubsrepository::journal","journal");
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        invertedDataSourceClass.put("aggregator::pubsrepository::institutional","aggregator");
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        invertedDataSourceClass.put("aggregator::pubsrepository::journals","aggregator");
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        invertedDataSourceClass.put("aggregator::datarepository","aggregator");
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        invertedDataSourceClass.put("aggregator::pubsrepository::unknown","aggregator");
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        httpHeaders = new HttpHeaders();
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        httpHeaders.setContentType(MediaType.APPLICATION_JSON_UTF8);
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        for (String vocName : vocabularyNames) {
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            vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
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        }
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        Country[] countries = getCountries();
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        for (Country c : countries) {
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            countriesMap.put(c.getName(), c.getCode());
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            inverseCountriesMap.put(c.getCode(), c.getName());
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        }
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    }
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    @Override
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    public Country[] getCountries() {
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        UriComponents uriComponents = UriComponentsBuilder
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                .fromHttpUrl(baseAddress + "/ds/countries")
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                .build().encode();
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        return restTemplate.getForObject(uriComponents.toUri(), Country[].class);
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    }
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    @Override
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    public List<RepositorySnippet> getRepositoriesByCountry(String country,
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                                                            String mode,
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                                                            Boolean managed) throws JSONException, IOException {
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        LOGGER.debug("Getting repositories by country!");
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        int page = 0;
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        int size = 100;
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        List<RepositorySnippet> resultSet = new ArrayList<>();
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        ObjectMapper mapper = new ObjectMapper();
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        String filterKey = "UNKNOWN";
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        if (mode.equalsIgnoreCase("opendoar"))
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            filterKey = "openaire____::opendoar";
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        else if (mode.equalsIgnoreCase("re3data"))
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            filterKey = "openaire____::re3data";
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        LOGGER.debug("Country code equals : " + country);
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        LOGGER.debug("Filter mode equals : " + filterKey);
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        UriComponents uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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        RequestFilter requestFilter = new RequestFilter();
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        requestFilter.setCountry(country);
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        requestFilter.setCollectedfrom(filterKey);
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        try{
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            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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            while (jsonArray.length() > 0 ) {
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                resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
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                        mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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                page += 1;
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                uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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                rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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                jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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            }
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            return resultSet;
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        }catch (Exception e){
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            LOGGER.debug("Exception on getRepositoriesByCountry" , e);
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//            emailUtils.reportException(e);
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            throw e;
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        }
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    }
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    public List<RepositorySnippet> searchRegisteredRepositories(String country, String typology, String englishName,
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            String officialName, String requestSortBy, String order, int page, int pageSize) throws Exception {
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        LOGGER.debug("Searching registered repositories");
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        List<RepositorySnippet> resultSet = new ArrayList<>();
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        ObjectMapper mapper = new ObjectMapper();
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        UriComponents uriComponents = searchRegisteredDatasource(requestSortBy, order, Integer.toString(page), Integer.toString(pageSize));
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        RequestFilter requestFilter = new RequestFilter();
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        requestFilter.setCountry(country);
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        requestFilter.setTypology(typology);
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        requestFilter.setOfficialname(officialName);
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        requestFilter.setEnglishname(englishName);
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        try {
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            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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            resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),  mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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             return resultSet;
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        }catch (Exception e){
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            LOGGER.error("Error searching registered datasources" , e);
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            throw e;
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        }
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    }
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    private Repository updateRepositoryInfo(Repository r) throws JSONException {
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        /*
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        * from datasource class
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        * we get the datasource type form the inverted map
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        * */
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        r.setDatasourceType(getRepositoryType(r.getDatasourceClass()));
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        r.setInterfaces(this.getRepositoryInterface(r.getId()));
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        r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
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        r.setCountryName(getCountryName(r.getCountryCode()));
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        return r;
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    }
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    private Collection<Repository> getRepositoriesByMode(String mode, List<Repository> rs) {
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        List<Repository> reps = new ArrayList<>();
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        for (Repository r : rs) {
225
            if (r.getCollectedFrom() != null && r.getCollectedFrom().equals(mode))
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                reps.add(r);
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        }
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        return reps;
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    }
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    @Override
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    public List<Repository> getRepositoriesOfUser(String userEmail,
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                                                  String page,
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                                                  String size) throws JSONException {
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        LOGGER.debug("Retreiving repositories of user : " + userEmail );
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        UriComponents uriComponents = searchDatasource(page,size);
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        RequestFilter requestFilter = new RequestFilter();
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        requestFilter.setRegisteredby(userEmail);
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        try{
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            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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            List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
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            for (Repository r : repos)
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                r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
248
            return repos;
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        }catch (Exception e){
250
            LOGGER.debug("Exception on getRepositoriesOfUser" , e);
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            emailUtils.reportException(e);
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            throw e;
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        }
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    }
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    @Override
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    public List<RepositorySnippet> getRepositoriesSnippetOfUser(String userEmail, String page, String size) throws IOException, JSONException {
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        List<RepositorySnippet> resultSet = new ArrayList<>();
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        ObjectMapper mapper = new ObjectMapper();
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        UriComponents uriComponents = searchSnipperDatasource(page,size);
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        RequestFilter requestFilter = new RequestFilter();
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        requestFilter.setRegisteredby(userEmail);
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265
        try{
266
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
267
            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
268
            while (jsonArray.length() > 0 ) {
269
                resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
270
                        mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
271
                page += 1;
272
                uriComponents = searchSnipperDatasource(page,size);
273
                rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
274
                jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
275
            }
276
            resultSet.parallelStream().forEach(repositorySnippet -> {
277
                repositorySnippet.setPiwikInfo(piWikService.getPiwikSiteForRepo(repositorySnippet.getId()));
278
            });
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            return resultSet;
280
        }catch (Exception e){
281
            LOGGER.debug("Exception on getRepositoriesByCountry" , e);
282
            throw e;
283
        }
284
    }
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    @Override
287
    public Repository getRepositoryById(String id) throws JSONException,ResourceNotFoundException {
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289
        LOGGER.debug("Retreiving repositories with id : " + id );
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        Repository repo = null;
291
        UriComponents uriComponents = searchDatasource("0","100");
292
        RequestFilter requestFilter = new RequestFilter();
293
        requestFilter.setId(id);
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295
        try{
296
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
297
            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
298

    
299
            if(jsonArray.length() == 0)
300
                throw new ResourceNotFoundException();
301

    
302
            repo = Converter.jsonToRepositoryObject(jsonArray.getJSONObject(0));
303
            return updateRepositoryInfo(repo);
304
        }catch (JSONException e){
305
            LOGGER.debug("Exception on getRepositoryById" , e);
306
            emailUtils.reportException(e);
307
            throw e;
308
        }
309

    
310
    }
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    @Override
314
    public List<AggregationDetails> getRepositoryAggregations(String id, int from, int size) throws JSONException {
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316
        LOGGER.debug("Retreiving aggregations for repository with id : " + id );
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        UriComponents uriComponents = searchDatasource(from+"",size+"");
318
        RequestFilter requestFilter = new RequestFilter();
319
        requestFilter.setId(id);
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321
        List<AggregationDetails> aggregationHistory = new ArrayList<>();
322

    
323
        try {
324
            long start = System.currentTimeMillis();
325
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
326
            long end = System.currentTimeMillis();
327

    
328
            System.out.println("Aggregations request through rest template took " + (end-start)+"ms");
329
            JSONObject repository = new JSONObject(rs);
330

    
331
            if(repository.getJSONArray("datasourceInfo").length() == 0)
332
                return aggregationHistory;
333

    
334
            start = System.currentTimeMillis();
335
            aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
336
            end = System.currentTimeMillis();
337

    
338
            System.out.println("Getting aggregations history from json " + (end-start)+"ms");
339
            return aggregationHistory.size() == 0? aggregationHistory : aggregationHistory.stream()
340
                                                    .sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
341
                                                    .limit(size)
342
                                                    .collect(Collectors.toList());
343
        } catch (JSONException e) {
344
            LOGGER.debug("Exception on getRepositoryAggregations" , e);
345
            emailUtils.reportException(e);
346
            throw e;
347
        }
348

    
349
    }
350

    
351
    @Override
352
    public Map<String, List<AggregationDetails>> getRepositoryAggregationsByYear(String id) throws JSONException {
353
        LOGGER.debug("Retreiving aggregations (by year) for repository with id : " + id );
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        UriComponents uriComponents = searchDatasource("0","100");
355
        RequestFilter requestFilter = new RequestFilter();
356
        requestFilter.setId(id);
357

    
358
        List<AggregationDetails> aggregationHistory = new ArrayList<>();
359
        Map<String, List<AggregationDetails>> aggregationByYear = new HashMap<>();
360
        try {
361
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
362
            JSONObject repository = new JSONObject(rs);
363

    
364
            if(repository.getJSONArray("datasourceInfo").length() == 0)
365
                return aggregationByYear;
366

    
367
            aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
368
            return aggregationHistory.size() == 0? aggregationByYear:createYearMap(aggregationHistory);
369

    
370
        } catch (JSONException e) {
371
            LOGGER.debug("Exception on getRepositoryAggregations" , e);
372
            emailUtils.reportException(e);
373
            throw e;
374
        }
375
    }
376

    
377
    private Map<String,List<AggregationDetails>> createYearMap(List<AggregationDetails> aggregationHistory) {
378
        Map<String, List<AggregationDetails>> aggregationByYear;
379
        aggregationHistory = aggregationHistory.stream()
380
                            .sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
381
                            .collect(Collectors.toList());
382

    
383
       return aggregationHistory.stream()
384
                            .collect(Collectors.groupingBy(AggregationDetails::getYear));
385
    }
386

    
387

    
388
    @Override
389
    public List<Repository> getRepositoriesByName(String name,
390
                                                  String page,
391
                                                  String size) throws JSONException {
392

    
393
        LOGGER.debug("Retreiving  repositories with official name : " + name );
394
        UriComponents uriComponents = searchDatasource("0","100");
395
        RequestFilter requestFilter = new RequestFilter();
396
        requestFilter.setOfficialname(name);
397

    
398
        try{
399
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
400
            List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
401
            for (Repository r : repos)
402
                updateRepositoryInfo(r);
403
            return repos;
404
        }catch (Exception e){
405
            LOGGER.debug("Exception on getRepositoriesByName" , e);
406
            emailUtils.reportException(e);
407
            throw e;
408
        }
409

    
410
    }
411

    
412
    @Override
413
    public List<RepositoryInterface> getRepositoryInterface(String id) throws JSONException {
414

    
415
        UriComponents uriComponents = UriComponentsBuilder
416
                .fromHttpUrl(baseAddress + "/ds/api/")
417
                .path("/{id}")
418
                .build().expand(id).encode();
419

    
420
        try{
421
            String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
422
            return Converter.jsonToRepositoryInterfaceList(new JSONObject(rs));
423
        }catch (Exception e ){
424
            LOGGER.debug("Exception on getRepositoryInterface" , e);
425
            emailUtils.reportException(e);
426
            throw e;
427
        }
428

    
429
    }
430

    
431
    @Override
432
    public Repository addRepository(String datatype,
433
                                    Repository repository) throws Exception {
434

    
435
        LOGGER.debug("storing " + datatype + " repository with id: " + repository.getId());
436

    
437
        repository.setCountryCode(countriesMap.get(repository.getCountryName()));
438
        repository.setActivationId(UUID.randomUUID().toString());
439
        repository.setCollectedFrom("infrastruct_::openaire");
440

    
441
        if (datatype.equals("journal")) {
442
            repository.setId("openaire____::issn" + repository.getIssn());
443
            repository.setNamespacePrefix("issn" + repository.getIssn());
444
            this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
445
        }else if (datatype.equals("aggregator")) {
446
            repository.setId("openaire____::" + com.unboundid.util.Base64.encode(repository.getOfficialName()));
447
            repository.setNamespacePrefix(DigestUtils.md5Hex(repository.getOfficialName()).substring(0,12));
448
            this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
449
        }else {
450
            this.latentUpdate(repository, SecurityContextHolder.getContext().getAuthentication());
451
        }
452

    
453
        return repository;
454
    }
455

    
456
    /* update method acting as add -> send email with registration topic/body*/
457
    private Repository latentUpdate(Repository repository, Authentication authentication) throws Exception {
458
        UriComponents uriComponents = UriComponentsBuilder
459
                .fromHttpUrl(baseAddress + "/ds/update/")
460
                .build()
461
                .encode();
462

    
463
        try {
464
            String json_repository = Converter.repositoryObjectToJson(repository);
465
            LOGGER.debug("JSON to add(update) -> " + json_repository);
466

    
467
            HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
468
            ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
469

    
470
            if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
471
                emailUtils.sendUserRegistrationEmail(repository, authentication);
472
                emailUtils.sendAdminRegistrationEmail(repository, authentication);
473
            } else
474
                LOGGER.debug(responseEntity.getBody().toString());
475

    
476
            return repository;
477
        } catch (Exception e) {
478
            LOGGER.debug("Exception on updateRepository" , e);
479
            emailUtils.reportException(e);
480
            throw e;
481
        }
482

    
483

    
484
    }
485

    
486
    @Override
487
    public Repository updateRepository(Repository repository,Authentication authentication) throws Exception {
488
        UriComponents uriComponents = UriComponentsBuilder
489
                .fromHttpUrl(baseAddress + "/ds/update/")
490
                .build()
491
                .encode();
492

    
493
        try {
494
            String json_repository = Converter.repositoryObjectToJson(repository);
495

    
496
            LOGGER.debug("JSON to update -> " + json_repository);
497

    
498
            HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
499
            ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity
500
                    , ResponseEntity.class);
501

    
502
            if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
503
                emailUtils.sendUserUpdateRepositoryEmail(repository, authentication);
504
                emailUtils.sendAdminUpdateRepositoryEmail(repository, authentication);
505
            } else
506
                LOGGER.debug(responseEntity.getBody().toString());
507

    
508
            return repository;
509
        } catch (Exception e) {
510
            LOGGER.debug("Exception on updateRepository" , e);
511
            emailUtils.reportException(e);
512
            throw e;
513
        }
514
    }
515

    
516
    private void storeRepository(Repository repository, Authentication authentication) throws Exception {
517

    
518
        Date utilDate = new Date();
519
        Timestamp date = new Timestamp(utilDate.getTime());
520
        repository.setDateOfCollection(date);
521
        repository.setAggregator("OPENAIRE");
522
        repository.setCountryCode(countriesMap.get(repository.getCountryName()));
523

    
524
        UriComponents uriComponents = UriComponentsBuilder
525
                .fromHttpUrl(baseAddress + "/ds/add/")
526
                .build()
527
                .encode();
528
        String json_repository = Converter.repositoryObjectToJson(repository);
529
        HttpEntity<String> httpEntity = new HttpEntity <String> (json_repository,httpHeaders);
530
        ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
531

    
532
        if(responseEntity.getStatusCode().equals(HttpStatus.OK)) {
533
            emailUtils.sendUserRegistrationEmail(repository, authentication);
534
            emailUtils.sendAdminRegistrationEmail(repository, authentication);
535
        } else {
536
            LOGGER.debug(responseEntity.getBody().toString());
537
        }
538
    }
539

    
540
    @Override
541
    public void deleteRepositoryInterface(String id ,
542
                                          String registeredBy){
543
        UriComponents uriComponents = UriComponentsBuilder
544
                .fromHttpUrl(baseAddress + "/ds/api/")
545
                .path("/{id}")
546
                .build().expand(id).encode();
547
        LOGGER.debug(uriComponents.toUri());
548
        restTemplate.delete(uriComponents.toUri());
549
    }
550

    
551
    @Override
552
    public RepositoryInterface addRepositoryInterface(String datatype,
553
                                                      String repoId,
554
                                                      String registeredBy,
555
                                                      RepositoryInterface repositoryInterface) throws JSONException, ResourceNotFoundException, ValidatorServiceException {
556
        try {
557
            Repository e = this.getRepositoryById(repoId);
558
            repositoryInterface = createRepositoryInterface(e,repositoryInterface,datatype);
559
            String json_interface = Converter.repositoryInterfaceObjectToJson(e,repositoryInterface);
560

    
561
            UriComponents uriComponents = UriComponentsBuilder
562
                    .fromHttpUrl(baseAddress + "/ds/api/add/")
563
                    .build()
564
                    .encode();
565

    
566
            HttpEntity<String> httpEntity = new HttpEntity <> (json_interface,httpHeaders);
567
            restTemplate.postForObject(uriComponents.toUri(),httpEntity,String.class);
568
            submitInterfaceValidation(e, registeredBy, repositoryInterface, false);
569

    
570
            return repositoryInterface;
571

    
572
        } catch (JSONException | ValidatorServiceException e) {
573
            LOGGER.debug("Exception on addRepositoryInterface" , e);
574
            emailUtils.reportException(e);
575
            throw e;
576
        }
577
    }
578

    
579
    @Override
580
    public RepositoryInterface updateRepositoryInterface(String repoId,
581
                                                         String registeredBy,
582
                                                         RepositoryInterface repositoryInterface) throws Exception {
583

    
584
        this.updateBaseUrl(repoId,repositoryInterface.getId(),repositoryInterface.getBaseUrl());
585
        this.updateCompliance(repoId,repositoryInterface.getId(),repositoryInterface.getCompliance());
586
        this.updateValidationSet(repoId,repositoryInterface.getId(),repositoryInterface.getAccessSet());
587
        submitInterfaceValidation(getRepositoryById(repoId),registeredBy,repositoryInterface,true);
588
        return repositoryInterface;
589
    }
590

    
591
    private void submitInterfaceValidation(Repository repo, String userEmail, RepositoryInterface iFace, boolean updateExisting) throws ValidatorServiceException {
592
        JobForValidation job = new JobForValidation();
593

    
594
        job.setActivationId(UUID.randomUUID().toString());
595
        job.setAdminEmails(Collections.singletonList(this.adminEmail));
596
        job.setBaseUrl(iFace.getBaseUrl());
597
        job.setDatasourceId(repo.getId());
598
        job.setDesiredCompatibilityLevel(iFace.getDesiredCompatibilityLevel());
599
        job.setInterfaceId(iFace.getId());
600
        job.setOfficialName(repo.getOfficialName());
601
        job.setRepoType(repo.getDatasourceType());
602
        job.setUserEmail(userEmail);
603
        job.setValidationSet((iFace.getAccessSet().isEmpty() ? "none" : iFace.getAccessSet()));
604
        job.setRecords(-1);
605
        job.setRegistration(!updateExisting);
606
        job.setUpdateExisting(updateExisting);
607

    
608
        this.validatorService.submitJobForValidation(job);
609
    }
610

    
611
    private RepositoryInterface createRepositoryInterface(Repository repo, RepositoryInterface iFace, String datatype) {
612

    
613
        iFace.setContentDescription("metadata");
614
        iFace.setCompliance("UNKNOWN");
615

    
616
        if (datatype.equals("re3data"))
617
            iFace.setAccessFormat("oai_datacite");
618
        else
619
            iFace.setAccessFormat("oai_dc");
620

    
621

    
622
        if (repo.getDatasourceClass() != null && !repo.getDatasourceClass().isEmpty())
623
            iFace.setTypology(repo.getDatasourceClass());
624
        else if (datatype.equalsIgnoreCase("journal"))
625
            iFace.setTypology("pubsrepository::journal");
626
        else if (datatype.equalsIgnoreCase("aggregator"))
627
            iFace.setTypology("aggregator::pubsrepository::unknown");
628
        else if (datatype.equalsIgnoreCase("opendoar"))
629
            iFace.setTypology("pubsrepository::unknown");
630
        else if (datatype.equalsIgnoreCase("re3data"))
631
            iFace.setTypology("datarepository::unknown");
632

    
633
        iFace.setRemovable(true);
634
        iFace.setAccessProtocol("oai");
635
        iFace.setMetadataIdentifierPath("//*[local-name()='header']/*[local-name()='identifier']");
636
        iFace.setId("api_________::" + repo.getId() + "::" + UUID.randomUUID().toString().substring(0, 8));
637
        if (iFace.getAccessSet() == null || iFace.getAccessSet().isEmpty()) {
638
            LOGGER.debug("set is empty: " + iFace.getAccessSet());
639
            iFace.removeAccessSet();
640
            iFace.setAccessSet("none");
641
        }
642
        return iFace;
643
    }
644

    
645
    @Override
646
    public List<String> getDnetCountries() {
647
        LOGGER.debug("Getting dnet-countries!");
648
        return Converter.readFile("countries.txt");
649
    }
650

    
651
    @Override
652
    public List<String> getTypologies() {
653
        return Converter.readFile("typologies.txt");
654
    }
655

    
656
    @Override
657
    public List<Timezone> getTimezones() {
658
        List<String> timezones =  Converter.readFile("timezones.txt");
659
        return Converter.toTimezones(timezones);
660
    }
661

    
662
    @Override
663
    public List<String> getUrlsOfUserRepos(String userEmail,
664
                                           String page,
665
                                           String size){
666
        UriComponents uriComponents = UriComponentsBuilder
667
                .fromHttpUrl(baseAddress + "/api/baseurl/")
668
                .path("/{page}/{size}")
669
                .build().expand(page,size).encode();
670

    
671
        try{
672
            RequestFilter requestFilter = new RequestFilter();
673
            requestFilter.setRegisteredby(userEmail);
674
            return Arrays.asList(restTemplate.postForObject(uriComponents.toUri(),requestFilter, String[].class));
675
        }catch (Exception e){
676
            LOGGER.debug("Exception on addRepositoryInterface" , e);
677
            emailUtils.reportException(e);
678
            throw e;
679
        }
680
    }
681

    
682
    @Override
683
    public List<String> getDatasourceVocabularies(String mode) {
684

    
685
        List<String> resultSet = new ArrayList<>();
686
        for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
687
            if (mode.equalsIgnoreCase("aggregator")) {
688
                if (entry.getKey().contains("aggregator"))
689
                    resultSet.add(entry.getValue());
690
            } else if (mode.equalsIgnoreCase("journal")) {
691
                if (entry.getKey().contains("journal"))
692
                    resultSet.add(entry.getValue());
693
            } else if (mode.equalsIgnoreCase("opendoar")) {
694
                if (entry.getKey().contains("pubsrepository"))
695
                    resultSet.add(entry.getValue());
696
            } else if (mode.equalsIgnoreCase("re3data")) {
697
                if (entry.getKey().contains("datarepository"))
698
                    resultSet.add(entry.getValue());
699
            }
700
        }
701

    
702

    
703
        return resultSet;
704
    }
705

    
706
    private Vocabulary getVocabulary(String vocName) {
707

    
708
        if (!vocabularyMap.containsKey(vocName)) {
709
            vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
710
        }
711
        return vocabularyMap.get(vocName);
712
    }
713

    
714

    
715
    @Override
716
    public Map<String, String> getCompatibilityClasses(String mode)  {
717

    
718
        LOGGER.debug("Getting compatibility classes for mode: " + mode);
719
        Map<String, String> retMap = new HashMap<String, String>();
720

    
721
        Map<String, String> compatibilityClasses = this.getVocabulary("dnet:compatibilityLevel").getAsMap();
722
        boolean foundData = false;
723
        for (Map.Entry<String, String> entry : compatibilityClasses.entrySet()) {
724
            if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_ALL))
725
                return compatibilityClasses;
726
            else if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA)) {
727
                if (entry.getKey().matches("^openaire[1-9].0_data$")) {
728
                    retMap.put(entry.getKey(), entry.getValue());
729
                    foundData = true;
730
                }
731
            } else {
732
                if (entry.getKey().matches("^openaire[1-9].0$") || entry.getKey().equals("driver"))
733
                    retMap.put(entry.getKey(), entry.getValue());
734
            }
735
        }
736

    
737
        //TODO TO BE REMOVED WHEN VOCABULARIES ARE UPDATED
738
        if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA) && !foundData)
739
            retMap.put("openaire2.0_data", "OpenAIRE Data (funded, referenced datasets)");
740

    
741
        return retMap;
742
    }
743

    
744
    @Override
745
    public Map<String, String> getDatasourceClasses(String mode)  {
746

    
747
        LOGGER.debug("Getting datasource classes for mode: " + mode);
748

    
749
        Map<String, String> retMap = new HashMap<String, String>();
750

    
751
        for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
752
            if (mode.equalsIgnoreCase("aggregator")) {
753
                if (entry.getKey().contains("aggregator"))
754
                    retMap.put(entry.getKey(), entry.getValue());
755
            } else if (mode.equalsIgnoreCase("journal")) {
756
                if (entry.getKey().contains("journal"))
757
                    retMap.put(entry.getKey(), entry.getValue());
758
            } else if (mode.equalsIgnoreCase("opendoar")) {
759
                if (entry.getKey().contains("pubsrepository"))
760
                    retMap.put(entry.getKey(), entry.getValue());
761
            } else if (mode.equalsIgnoreCase("re3data")) {
762
                if (entry.getKey().contains("datarepository"))
763
                    retMap.put(entry.getKey(), entry.getValue());
764
            }
765
        }
766
        return filterResults(retMap,mode);
767

    
768
    }
769

    
770
    private Map<String,String> filterResults(Map<String, String> map,String mode) {
771

    
772
        HashMap<String,String> filteredMap = new HashMap<>();
773
        for(String key:map.keySet())
774
            if(dataSourceClass.get(mode).contains(key))
775
                filteredMap.put(key,map.get(key));
776

    
777
        return filteredMap;
778
    }
779

    
780
    @Override
781
    public String getCountryName(String countryCode) {
782
        return inverseCountriesMap.get(countryCode);
783
    }
784

    
785
    @Override
786
    public MetricsInfo getMetricsInfoForRepository(String repoId) throws RepositoryServiceException {
787
        try {
788

    
789
            MetricsInfo metricsInfo = new MetricsInfo();
790
            metricsInfo.setDiagramsBaseURL(this.usageStatisticsDiagramsBaseURL);
791
            metricsInfo.setMetricsNumbers(getMetricsNumbers(getOpenAIREId(repoId)));
792
            return metricsInfo;
793

    
794
        } catch (Exception e) {
795
            LOGGER.error("Error while getting metrics info for repository: ", e);
796
            emailUtils.reportException(e);
797
            throw new RepositoryServiceException("General error", RepositoryServiceException.ErrorCode.GENERAL_ERROR);
798
        }
799
    }
800

    
801
    @Override
802
    public Map<String, String> getListLatestUpdate(String mode) throws JSONException {
803
        if(mode.equals("opendoar"))
804
            return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(0).getLastCollectionDate());
805
        else
806
            /*
807
            * first api of re3data has null value on collection date
808
            * */
809
            return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(1).getLastCollectionDate());
810
    }
811

    
812
    private void updateValidationSet(String repositoryId, String repositoryInterfaceId, String validationSet) throws Exception {
813
        UriComponents uriComponents = UriComponentsBuilder
814
                .fromHttpUrl(baseAddress + "/ds/api/oaiset")
815
                .queryParam("dsId",repositoryId)
816
                .queryParam("apiId",repositoryInterfaceId)
817
                .queryParam("oaiSet",validationSet)
818
                .build().encode();
819
       restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, null, ResponseEntity.class);
820

    
821
    }
822

    
823

    
824
    private void updateBaseUrl(String repositoryId, String repositoryInterfaceId, String baseUrl) {
825
        UriComponents uriComponents = UriComponentsBuilder
826
                .fromHttpUrl(baseAddress + "/ds/api/baseurl")
827
                .queryParam("dsId",repositoryId)
828
                .queryParam("apiId",repositoryInterfaceId)
829
                .queryParam("baseUrl",baseUrl)
830
                .build().encode();
831
        restTemplate.postForObject(uriComponents.toUri(),null,String.class);
832
    }
833

    
834
    private void updateCompliance(String repositoryId, String repositoryInterfaceId,String compliance) {
835
        UriComponents uriComponents = UriComponentsBuilder
836
                .fromHttpUrl(baseAddress + "/ds/api/compliance")
837
                .queryParam("dsId",repositoryId)
838
                .queryParam("apiId",repositoryInterfaceId)
839
                .queryParam("compliance",compliance)
840
                .build().encode();
841
        restTemplate.postForObject(uriComponents.toUri(),null,String.class);
842
    }
843

    
844
    private MetricsNumbers getMetricsNumbers(String openAIREID) throws BrokerException {
845

    
846
        //build the uri params
847
        UriComponentsBuilder builder = UriComponentsBuilder.fromHttpUrl(this.usageStatisticsNumbersBaseURL + openAIREID + "/clicks");
848

    
849
        //create new template engine
850
        RestTemplate template = new RestTemplate();
851
        template.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
852
        ResponseEntity<MetricsNumbers> resp;
853
        try {
854
            //communicate with endpoint
855
            resp = template.exchange(
856
                    builder.build().encode().toUri(),
857
                    HttpMethod.GET,
858
                    null,
859
                    new ParameterizedTypeReference<MetricsNumbers>() {
860
                    });
861
        } catch (RestClientException e) {
862
            LOGGER.debug("Exception on getMetricsNumbers" , e);
863
            emailUtils.reportException(e);
864
            throw e;
865
        }
866

    
867
        return resp.getBody();
868
    }
869

    
870
    private String getOpenAIREId(String repoId) {
871

    
872
        if (repoId != null && repoId.contains("::")) {
873
            return repoId.split("::")[0] + "::" + DigestUtils.md5Hex(repoId.split("::")[1]);
874
        }
875

    
876
        return null;
877
    }
878

    
879
    private UriComponents searchDatasource(String page,String size){
880

    
881
        return UriComponentsBuilder
882
                .fromHttpUrl(baseAddress + "/ds/search/")
883
                .path("/{page}/{size}/")
884
                .queryParam("requestSortBy","officialname")
885
                .queryParam("order","ASCENDING")
886
                .build().expand(page, size).encode();
887
    }
888

    
889
    private UriComponents searchSnipperDatasource(String page,String size){
890

    
891
        return UriComponentsBuilder
892
                .fromHttpUrl(baseAddress + "/ds/searchsnippet/")
893
                .path("/{page}/{size}/")
894
                .queryParam("requestSortBy","officialname")
895
                .queryParam("order","ASCENDING")
896
                .build().expand(page, size).encode();
897
    }
898

    
899
    private UriComponents searchRegisteredDatasource(String requestSortBy, String order, String page,String size){
900

    
901
        return UriComponentsBuilder
902
                .fromHttpUrl(baseAddress + "/ds/searchregistered/")
903
                .path("/{page}/{size}/")
904
                .queryParam("requestSortBy",requestSortBy)
905
                .queryParam("order",order)
906
                .build().expand(page, size).encode();
907
    }
908

    
909
    private String getRepositoryType(String typology){
910
        return invertedDataSourceClass.get(typology);
911
    }
912

    
913

    
914
}
(12-12/20)