Revision 59916
Added by Miriam Baglioni over 3 years ago
| modules/dnet-openaireplus-profiles/trunk/src/main/resources/eu/dnetlib/test/profiles/TransformationRuleDSResources/TransformationRuleDSResourceType/crossref2dc_frontiers.xml | ||
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<RESOURCE_PROFILE> |
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<HEADER> |
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<RESOURCE_IDENTIFIER value="4b853f33-6aac-4d2e-83cc-8427dda992c5_VHJhbnNmb3JtYXRpb25SdWxlRFNSZXNvdXJjZXMvVHJhbnNmb3JtYXRpb25SdWxlRFNSZXNvdXJjZVR5cGU="/> |
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<RESOURCE_TYPE value="TransformationRuleDSResourceType"/> |
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<RESOURCE_KIND value="TransformationRuleDSResources"/> |
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<RESOURCE_URI value=""/> |
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<DATE_OF_CREATION value="2020-06-09T11:55:37+00:00"/> |
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</HEADER> |
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<BODY> |
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<CONFIGURATION> |
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<IMPORTED/> |
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<SCRIPT> |
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<TITLE>crossref2dc_frontiers</TITLE> |
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<CODE>declare_script "crossref2dc_frontiers"; |
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declare_ns oaf = "http://namespace.openaire.eu/oaf"; |
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declare_ns dri = "http://www.driver-repository.eu/namespace/dri"; |
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declare_ns dr = "http://www.driver-repository.eu/namespace/dr"; |
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declare_ns dc = "http://purl.org/dc/elements/1.1/"; |
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declare_ns prov = "http://www.openarchives.org/OAI/2.0/provenance"; |
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declare_ns xs = "http://www.w3.org/2001/XMLSchema"; // |
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$var0 = "''"; |
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$varFP7 = "'corda_______::'"; |
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$varH2020 = "'corda__h2020::'"; |
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$varAKA = "'aka_________::'"; // formerly $varAFF = "'aff_________::'"; |
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$varARC = "'arc_________::'"; |
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$varCONICYT = "'conicytf____::'"; |
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$varDFG = "'dfgf________::'"; |
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$varFCT="'fct_________::'"; |
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$varFWF = "'fwf_________::'"; |
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//$varHRZZ = "'irb_hr______::'"; // HRZZ not found within BASE |
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$varMESTD = "'mestd_______::'"; |
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$varMZOS = "'irb_hr______::'"; |
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$varNHMRC = "'nhmrc_______::'"; |
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$varNIH = "'nih_________::'"; |
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$varNSF = "'nsf_________::'"; |
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$varNWO = "'nwo_________::'"; |
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$varRCUK = "'rcuk________::'"; |
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$varSFI ="'sfi_________::'"; |
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$varSGOV = "'sgov________::'"; // to be added, awaiting DOI from Pilar, found project ids not in CSV list? |
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$varSNSF = "'snsf________::'"; |
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$varTARA = "'taraexp_____::'"; // to be added, awaiting DOI from André |
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$varTUBITAK = "'tubitakf____::'"; |
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$varWT = "'wt__________::'"; |
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$varDummy = "''"; |
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static $varDatasourceid = getValue(PROFILEFIELD, [xpath:"concat('collection(&apos;/db/DRIVER/RepositoryServiceResources&apos;)//RESOURCE_PROFILE[.//EXTRA_FIELDS/FIELD[key=&quot;NamespacePrefix&quot;][value=&quot;', //oaf:datasourceprefix, '&quot;]]')", xpath:"//EXTRA_FIELDS/FIELD[key='OpenAireDataSourceId']/value"]);
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static $varRepoid = xpath:"//dri:repositoryId"; |
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static $varOfficialname = getValue(PROFILEFIELD, [xpath:"concat('collection(&apos;/db/DRIVER/RepositoryServiceResources&apos;)//RESOURCE_PROFILE[.//EXTRA_FIELDS/FIELD[key=&quot;NamespacePrefix&quot;][value=&quot;', //oaf:datasourceprefix, '&quot;]]')", xpath:"//CONFIGURATION/OFFICIAL_NAME"]);
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dri:objIdentifier = xpath:"//dri:objIdentifier"; |
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dri:repositoryId = $varRepoid; |
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dri:recordIdentifier = xpath:"//dri:recordIdentifier"; |
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// skipping records |
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// type AMA (Ask Me Anything), type journal, type dataset (which are not datasets) |
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if xpath:"//*[local-name()='family'][. = 'r/Science']" dc:type = skipRecord(); else $varDummy = "''"; |
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if xpath:"//*[local-name()='items']/*[local-name()='type'][. = 'journal' or . = 'dataset' or .='book' or .='component']" dc:type = skipRecord(); else $varDummy = "''"; |
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// empty or missing title |
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if xpath:"not(//*[local-name()='title']) or not(//*[local-name()='title'][string-length(.) > 0])" dc:title = skipRecord(); else $varDummy = "''"; |
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// empty or missing creator |
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if xpath:"not(//*[local-name()='author'][string-length(./*[local-name()='family']) + string-length(./*[local-name()='given']) > 0])" dc:creator = skipRecord(); else $varDummy = "''"; |
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// creator |
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//apply xpath:"//*[local-name()='author']" if xpath:"string-length(./*[local-name()='family']) + string-length(./*[local-name()='given']) > 0 and not(./*[local-name()='ORCID'])" dc:creator = xpath:"concat(normalize-space(./*[local-name()='family']), ./*[local-name()='suffix'][not(starts-with(lower-case(.), 'prof') or starts-with(lower-case(.), 'dr') or starts-with(lower-case(.), 'phd') or starts-with(lower-case(.), 'md'))]/concat(' ', normalize-space(.)), ', ', normalize-space(./*[local-name()='given']))"; else $varDummy = "''";
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//apply xpath:"//*[local-name()='author']" if xpath:"string-length(./*[local-name()='family']) + string-length(./*[local-name()='given']) > 0 and ./*[local-name()='ORCID']" dc:creator = set(xpath:"concat(normalize-space(./*[local-name()='family']), ./*[local-name()='suffix'][not(starts-with(lower-case(.), 'prof') or starts-with(lower-case(.), 'dr') or starts-with(lower-case(.), 'phd') or starts-with(lower-case(.), 'md'))]/concat(' ', normalize-space(.)), ', ', normalize-space(./*[local-name()='given']))", @nameIdentifierScheme = xpath:"orcid";, @nameIdentifier = xpath:"./*[local-name()='ORCID']/substring-after(., 'http://orcid.org/')";); else $varDummy = "''";
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$varOrcidName = xpath:"if (//*[local-name()='items']/*[local-name()='type'][.='journal-article']) then //*[local-name()='author'][string-length(./*[local-name()='family']) + string-length(./*[local-name()='given']) > 0]/concat(normalize-space(./*[local-name()='family']), ./*[local-name()='suffix'][not(starts-with(lower-case(.), 'prof') or starts-with(lower-case(.), 'dr') or starts-with(lower-case(.), 'phd') or starts-with(lower-case(.), 'md'))]/concat(' ', normalize-space(.)), ', ', normalize-space(./*[local-name()='given'])) else //*[local-name()='editor'][string-length(./*[local-name()='family']) + string-length(./*[local-name()='given']) > 0]/concat(normalize-space(./*[local-name()='family']), ./*[local-name()='suffix'][not(starts-with(lower-case(.), 'prof') or starts-with(lower-case(.), 'dr') or starts-with(lower-case(.), 'phd') or starts-with(lower-case(.), 'md'))]/concat(' ', normalize-space(.)), ', ', normalize-space(./*[local-name()='given']))";
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$varOrcidOrcid = xpath:"//*[local-name()='author'][string-length(./*[local-name()='family']) + string-length(./*[local-name()='given']) > 0]/substring-after(./*[local-name()='ORCID'], 'http://orcid.org/')"; |
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dc:creator = set(xpath:"$varOrcidName", @nameIdentifier = xpath:"subsequence($varOrcidOrcid,position(),1)";, @nameIdentifierScheme=xpath:"replace(subsequence($varOrcidOrcid,position(),1),'^.+$','ORCID')";, @schemeUri=xpath:"replace(subsequence($varOrcidOrcid,position(),1),'^.+$','http://orcid.org/')";); |
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// title |
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apply xpath:"//*[local-name()='title']" if xpath:"string-length(normalize-space(.)) > 0" dc:title = xpath:"normalize-space(.)"; else $varDummy = "''"; |
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// subjects here seem not to refer to vocabularies |
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apply xpath:"//*[local-name()='subject']" if xpath:"string-length(.) > 0" dc:subject = xpath:"normalize-space(.)"; else $varDummy = "''"; |
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// publisher |
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apply xpath:"//*[local-name()='publisher']" if xpath:"string-length(.) > 0" dc:publisher = xpath:"normalize-space(.)"; else $varDummy = "''"; |
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$varHttpTest = "''"; |
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// identifier |
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apply xpath:"//*[local-name()='URL'][starts-with(normalize-space(.), 'http://dx.doi.org')]" if xpath:"." dc:identifier = xpath:"normalize-space(.)"; else $var0 = "''"; |
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dr:dateOfCollection = xpath:"//dri:dateOfCollection"; |
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static dr:dateOfTransformation = xpath:"current-dateTime()"; |
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//###BASE type |
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dc:type = xpath:"//*[local-name()='items']/*[local-name()='type']"; |
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// date |
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// dc:date = xpath:"//*[local-name()='published-print' or local-name()='published-online']/*[local-name()='date-parts']/string-join(*[local-name()='array'], '-')"; |
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dc:date = xpath:"//*[local-name()='published-online']/*[local-name()='date-parts']/string-join(*[local-name()='array'], '-')"; |
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// first check whether //published-print/date-parts (or published-online) contains at most 3 (array) fields, with apt lengths; then alternate the values with '-', giving month/day standard length or dummy values before. |
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oaf:dateAccepted = xpath:"//*[local-name()='published-online']/*[local-name()='date-parts']/string-join(*[local-name()='array'], '-')"; |
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//apply xpath:"(//*[local-name()='published-print' or local-name()='published-online'], //*[local-name()='issued'][not(//*[local-name()='array' and contains(., 'null')])][not(//*[local-name()='published-print' or local-name()='published-online'])])/*[local-name()='date-parts'][max((count(*),3))=3 and string-length(*[1])=4 and max((subsequence(*/string-length(),2,2),2))=2]" if xpath:"." oaf:dateAccepted = xpath:"string-join((*[1], substring(substring(concat('0',*[2],'1'),string-length(*[2])),1,2), substring(substring(concat('0',*[3],'1'),string-length(*[3])),1,2)), '-')"; else $varDummy = "''";
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dc:language = "eng"; |
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// FP7 |
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//oaf:projectid = xpath:"//dc:relation[matches(normalize-space(.), '(.*)(info:eu-repo/grantagreement[/]+ec/fp7/)(\d\d\d\d\d\d)(.*)', 'i')][contains(lower-case(.), 'info:eu-repo')]/concat($varFP7, replace(normalize-space(.), '(.*)(info:eu-repo/grantagreement[/]+ec/fp7/)(\d\d\d\d\d\d)(.*)', '$3', 'i'))"; |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Seventh Framework Program')], ./*[local-name()='DOI' and .='10.13039/100011102']]/*[local-name()='award' and matches(., '^\d{6}$')]/concat($varFP7, .)";
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// H2020 |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Horizon 2020') or contains(., 'H2020')], ./*[local-name()='DOI' and .='10.13039/100010661']]/*[local-name()='award' and matches(., '^\d{6}$')]/concat($varH2020, .)";
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// AKA |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and (contains(., 'Suomen Akatemia') or contains(., 'Academy of Finland'))], ./*[local-name()='DOI' and .='10.13039/501100002341']]/*[local-name()='award']/concat($varAKA, .)"; |
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// ARC |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Australian Research Council')], ./*[local-name()='DOI' and .='10.13039/501100000923']]/*[local-name()='award' and matches(., '^\d{6}$')]/concat($varARC, .)";
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// CONICYT |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and (contains(., 'Comisión Nacional de Investigación Científica y Tecnológica') or contains(., 'CONICYT'))], ./*[local-name()='DOI' and .='10.13039/501100002848']]/*[local-name()='award']/concat($varCONICYT, .)"; |
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// DFG |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and (contains(., 'Deutsche Forschungsgemeinschaft') or contains(., 'DFG'))], ./*[local-name()='DOI' and .='10.13039/501100001659']]/*[local-name()='award']/concat($varDFG, .)"; |
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// FCT |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Fundação para a Ciência e a Tecnologia')], ./*[local-name()='DOI' and .='10.13039/501100001871']]/*[local-name()='award']/concat($varFCT, .)"; |
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// FWF |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Fonds zur Förderung der Wissenschaftlichen Forschung') or contains(., 'Austrian Science Fund')], ./*[local-name()='DOI' and .='10.13039/501100002428']]/*[local-name()='award']/concat($varFWF, .)"; |
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// MESTD |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and ((contains(., 'Ministarstvo Prosvete, Nauke i Tehnolo') and contains(., 'kog Razvoja')) or contains(., 'MESTD'))], ./*[local-name()='DOI' and .='10.13039/501100001871']]/*[local-name()='award']/concat($varMESTD, .)"; |
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// $varMZOS |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and (contains(., 'Ministarstvo Znanosti, Obrazovanja i Sporta') or contains(., 'Ministry of Science, Education and Sports'))], ./*[local-name()='DOI' and .='10.13039/501100006588']]/*[local-name()='award']/concat($varMZOS, .)"; |
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// NHMRC |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and (contains(., 'National Health and Medical Research Council') or contains(., 'NHMRC'))], ./*[local-name()='DOI' and .='10.13039/501100000925']]/*[local-name()='award']/concat($varNHMRC, .)"; |
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// NIH |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'National Institutes of Health')], ./*[local-name()='DOI' and .='10.13039/100000002']]/*[local-name()='award']/concat($varNIH, .)"; |
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// NSF |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'National Science Foundation')], ./*[local-name()='DOI' and .='10.13039/100000001']]/*[local-name()='award']/concat($varNSF, .)"; |
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// NWO |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Netherlands Organisation for Scientific Research') or contains(., 'Nederlandse Organisatie voor Wetenschappelijk Onderzoek')], ./*[local-name()='DOI' and .='10.13039/501100003246']]/*[local-name()='award']/concat($varNWO, .)"; |
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// RCUK |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and (contains(., 'Research Councils UK') or contains(., 'RCUK'))], ./*[local-name()='DOI' and .='10.13039/501100000690']]/*[local-name()='award']/concat($varRCUK, .)"; |
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// SFI |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Science Foundation Ireland')], ./*[local-name()='DOI' and .='10.13039/501100001602']]/*[local-name()='award']/concat($varSFI, .)"; |
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// SNSF |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Swiss National Science Foundation') or contains(., 'Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung')], ./*[local-name()='DOI' and .='10.13039/501100001711']]/*[local-name()='award']/concat($varSFI, .)"; |
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// TUBITAK |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and (contains(., 'Turkish National Science and Research Council') or (contains(., 'Türkiye Bilimsel ve Teknolojik Ara') and contains(., 'rma Kurumu')))], ./*[local-name()='DOI' and .='10.13039/501100004410']]/*[local-name()='award']/concat($varTUBITAK, .)"; |
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// WT |
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oaf:projectid = xpath:"//*[local-name()='funder'][./*[local-name()='name' and contains(., 'Wellcome Trust')], ./*[local-name()='DOI' and .='10.13039/100004440']]/*[local-name()='award']/concat($varWT, .)"; |
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// dr:CobjCategory |
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// records declared as dataset are not datasets, on the landing page they are declared as paper, letter, ... AMAs are also declared as datasets |
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//dr:CobjCategory = Convert(xpath:"//*[local-name()='items']/*[local-name()='type' and not(. = 'dataset')]", TextTypologies); |
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//dr:CobjCategory = Convert(xpath:"//*[local-name()='items']/*[local-name()='type']", TextTypologies); |
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$varCobjCategory = Convert(xpath:"//*[local-name()='items']/*[local-name()='type']", TextTypologies); |
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$varSuperType = Convert(xpath:"normalize-space($varCobjCategory)", SuperTypes); |
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dr:CobjCategory = set($varCobjCategory, @type = $varSuperType;); |
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// review status |
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if xpath:"//*[local-name()='items']/*[local-name()='relation']/*[local-name()='has-review']" oaf:refereed = xpath:"'0001'"; else $var0 = "''"; |
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// there seem to be records with several licenses indicating OA, so for $varEmbargoEnd min is chosen to avoid a sequence |
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$varEmbargoEnd = xpath:"min(//*[local-name()='license'][./*[local-name()='URL' and (contains(., 'http://creativecommons.org/licenses/by') or contains(., 'http://www.elsevier.com/open-access/userlicense/'))]]/*[local-name()='start']/*[local-name()='date-time']/substring-before(., 'T'))"; |
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// if xpath:"(xs:date( max( ($varEmbargoEnd, '0001-01-01') ) ) gt current-date())" oaf:accessrights = "EMBARGO"; else $var0 = "''"; |
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//if xpath:"$varEmbargoEnd and not((xs:date( max( ($varEmbargoEnd, '0001-01-01') ) ) gt current-date()))" oaf:accessrights = "OPEN"; else $var0 = "''"; |
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// if xpath:"not($varEmbargoEnd)" oaf:accessrights = "UNKNOWN"; else $var0 = "''"; |
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oaf:accessrights = "OPEN"; |
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dc:rights = xpath:"//*[local-name()='license']/*[local-name()='URL']"; |
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if xpath:"$varEmbargoEnd" dc:date = xpath:"concat('info:eu-repo/date/embargoEnd/', $varEmbargoEnd)"; else $var0 = "''";
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if xpath:"$varEmbargoEnd" oaf:license = xpath:"//*[local-name()='license']/*[local-name()='URL'][contains (., 'http://creativecommons.org/licenses/by') or contains(., 'http://www.elsevier.com/open-access/userlicense/')]"; else $var0 = "''"; |
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// |
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static oaf:collectedFrom = set("''", @name = $varOfficialname; , @id = $varDatasourceid;);
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static oaf:hostedBy = set("''", @name = $varOfficialname; , @id = $varDatasourceid;);
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// |
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apply xpath:"//*[local-name()='article-number']" if xpath:"true()" dr:CobjIdentifier = xpath:"."; else $var0 = "''"; |
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//###BASE oaf:identifier |
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$varId = identifierExtract('["//DOI"]' , xpath:"./*[local-name()='record']/*[local-name()='metadata']/*[local-name()='items']/*[local-name()='DOI']" , '(10[.][0-9]{4,}[^\s"/<>]*/[^\s"<>]+)');
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// 1st param: list of xpath expressions to be applied on the metadata in json syntax; 2nd param: xpath expression for the metadata record; 3rd param reg expr that matches with a negative lookahead for the first group and extracts digits of the second group |
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//$varPmId = identifierExtract('["//dc:relation[starts-with(normalize-space(.), \"info:eu-repo/semantics/altIdentifier/pmid/\")]"]' , xpath:"./*[local-name()='record']" , '(?!info:eu-repo/semantics/altIdentifier/pmid/)(\d+)');
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// $varUrn = xpath:"substring-after(//dc:relation[starts-with(normalize-space(.), 'info:eu-repo/semantics/altIdentifier/urn/')], 'info:eu-repo/semantics/altIdentifier/urn/')"; |
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| 168 |
//$varUrn = identifierExtract('["//dc:relation[starts-with(normalize-space(.), \"info:eu-repo/semantics/altIdentifier/urn/\")]"]' , xpath:"./*[local-name()='record']" , '(?!info:eu-repo/semantics/altIdentifier/urn/)(urn:nbn:.*)');
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|
| 169 |
//$varIsbn = identifierExtract('["//ISBN[starts-with(normalize-space(.), \"http://id.crossref.org/isbn/\")]"]' , xpath:"./*[local-name()='record']" , '(?!http://id.crossref.org/isbn/)((\d*[-\s]){3,4}[\dX])');
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|
| 170 |
oaf:identifier = set(xpath:"$varId//value", @identifierType = "doi";); |
|
| 171 |
//oaf:identifier = set(xpath:"$varPmId//value", @identifierType = "pmid";); |
|
| 172 |
//oaf:identifier = set(xpath:"$varUrn//value", @identifierType = "urn";); |
|
| 173 |
//oaf:identifier = set(xpath:"$varIsbn//value", @identifierType = "isbn";); |
|
| 174 |
oaf:datasourceprefix = xpath:"//oaf:datasourceprefix"; |
|
| 175 |
// |
|
| 176 |
$varISSN = xpath:"//*[local-name()='ISSN']"; |
|
| 177 |
$varJournalTitle = xpath:"//*[local-name()='container-title']"; |
|
| 178 |
$varJournalVol = xpath:"//*[local-name()='metadata']/*[local-name()='items']/*[local-name()='volume']"; |
|
| 179 |
$varJournalIss = "''"; |
|
| 180 |
// xpath:"//*[local-name()='issue']"; |
|
| 181 |
$varJournalSp = "''"; |
|
| 182 |
// xpath:"//*[local-name()='page']/substring-before(., '-')"; |
|
| 183 |
$varJournalEp = "''"; |
|
| 184 |
// xpath:"//*[local-name()='page']/substring-after(., '-')"; |
|
| 185 |
oaf:journal = set($varJournalTitle, @issn = xpath:"$varISSN";, @vol = xpath:"$varJournalVol";, @iss = xpath:"$varJournalIss";, @sp = xpath:"$varJournalSp";, @ep = xpath:"$varJournalEp";); |
|
| 186 |
|
|
| 187 |
// https://www.frontiersin.org/articles/10.3389/feart.2020.00070/xml/nlm |
|
| 188 |
oaf:fulltext = xpath:"concat('https://www.frontiersin.org/articles/', $varId/value, '/xml/nlm')";
|
|
| 189 |
|
|
| 190 |
end</CODE> |
|
| 191 |
</SCRIPT> |
|
| 192 |
</CONFIGURATION> |
|
| 193 |
<STATUS/> |
|
| 194 |
<SECURITY_PARAMETERS/> |
|
| 195 |
</BODY> |
|
| 196 |
</RESOURCE_PROFILE> |
|
Also available in: Unified diff
crossref2dc_frontiers new TR as found on beta aggregator