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package eu.dnetlib.data.claims.handler;
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import eu.dnetlib.data.claims.utils.JsonldBuilder;
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import eu.dnetlib.data.claims.entity.*;
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import eu.dnetlib.data.claims.utils.ClaimUtils;
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import eu.dnetlib.data.claims.utils.QueryGenerator;
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import eu.dnetlib.data.claims.sql.SQLStoreException;
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import eu.dnetlib.data.claims.sql.SqlDAO;
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import org.apache.log4j.Logger;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.text.DateFormat;
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import java.text.SimpleDateFormat;
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import java.util.ArrayList;
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import java.util.Date;
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import java.util.List;
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/**
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* Created by argirok on 9/3/2016.
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*/
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public class FetchClaimHandler {
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private Logger log = Logger.getLogger(this.getClass());
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SqlDAO sqlDAO = null;
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QueryGenerator queryGenerator = null;
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public FetchClaimHandler(){
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// ApplicationContext context = new ClassPathXmlApplicationContext("../claims/migration/springContext-claims.xml");
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// sqlDAO = context.getBean(SqlDAO.class);
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}
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public String claims2JSON(List<Claim> claims) throws Exception {
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return JsonldBuilder.toJsonld(claims);
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}
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public String claim2JSON(Claim claim) throws Exception {
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return JsonldBuilder.toJsonld(claim);
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}
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/**
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*
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* @param user - user e-mail stored in claims DB
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByUser(String user, Integer limit, Integer offset, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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return fetchClaimsByUser(user,limit,offset,null,"claim.claim_date",true, types, addCurationInfo);
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}
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/**
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*
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* @param user - user e-mail stored in claims DB
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @param keyword filters in specific fields per type (result: {title,doi},project: {name.acronym. funder_name, funder_acronym}, context: {name})
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* @param orderField
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* @param descending
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByUser(String user, Integer limit, Integer offset,String keyword,String orderField,boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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log.info("Fetching claims for user"+user);
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaimsByUser(user, limit, offset,keyword,orderField,descending, types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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/**
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*
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchAllClaims( Integer limit, Integer offset, boolean addCurationInfo) throws Exception, SQLStoreException {
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log.info("Fetching all claims");
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return fetchAllClaims(limit,offset,null,"claim.claim_date",true,new ArrayList<String>(), addCurationInfo);
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}
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/**
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*
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @param keyword filters in specific fields per type (result: {title,doi},project: {name.acronym. funder_name, funder_acronym}, context: {name})
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* @param orderField
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* @param descending
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchAllClaims( Integer limit, Integer offset, String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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log.info("Fetching all claims");
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaims(limit, offset,keyword,orderField,descending,types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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/**
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*
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* @param dateFrom
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* @param dataTo
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByDate(String dateFrom, String dataTo, Integer limit, Integer offset, boolean addCurationInfo) throws Exception, SQLStoreException {
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return fetchClaimsByDate(dateFrom, dataTo, limit, offset, null, "claim.claim_date",true, new ArrayList<String>(),addCurationInfo);
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}
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/**
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*
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* @param dateFrom
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* @param dataTo
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByDate(String dateFrom, String dataTo, Integer limit, Integer offset, String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaimsByDate(dateFrom, dataTo, limit, offset,keyword, orderField, descending,types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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public List<Claim> fetchClaimsByDateForDashboards(String dateFrom, String dataTo, Integer limit, Integer offset, boolean addCurationInfo, ArrayList<String> dashboards) throws Exception, SQLStoreException {
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaimsByDateForDashboards(dateFrom, dataTo, limit, offset,null, "claim.claim_date", true,new ArrayList<String>(), params, dashboards);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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/**
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*
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* @param dateFrom
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* @param dataTo
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* @param openaireId for project
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public int fetchNumberOfClaimsByDateAndOpenaireId(String dateFrom, String dataTo, String openaireId, Integer limit, Integer offset, String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchNumberOfClaimsByDateAndOpenaireId(dateFrom, dataTo, openaireId, limit, offset,keyword, orderField, descending,types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return countClaimsByResultSet(rs);
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}
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/**
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*
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* @param openaireId for project
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByProject(String openaireId, Integer limit, Integer offset, boolean addCurationInfo) throws Exception, SQLStoreException {
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return fetchClaimsByProject(openaireId,limit, offset, null, "claim.claim_date",true, new ArrayList<String>(), addCurationInfo);
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}
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/**
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*
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* @param openaireId for project
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @param orderField
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* @param descending
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByProject(String openaireId, Integer limit, Integer offset, String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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log.info("Fetching claims by project ID:"+openaireId);
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaimsByProject(openaireId, limit, offset, keyword, orderField,descending,types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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/**
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*
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* @param openaireId of Funder
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* @param limit
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* @param offset
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByFunder(String openaireId, Integer limit, Integer offset, boolean addCurationInfo) throws Exception, SQLStoreException {
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return fetchClaimsByFunder(openaireId,limit,offset,null,"claim.claim_date",true, new ArrayList<String>(), addCurationInfo);
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}
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/**
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*
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* @param openaireId of Funder
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* @param limit
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* @param offset
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* @param orderField
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* @param descending
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByFunder(String openaireId, Integer limit, Integer offset,String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaimsByFunder(openaireId, limit, offset,keyword, orderField,descending,types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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/**
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*
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* @param openaireId for result
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByResult(String openaireId, Integer limit, Integer offset, boolean addCurationInfo) throws Exception, SQLStoreException {
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return fetchClaimsByResult(openaireId,limit,offset,null, "claim.claim_date",true, new ArrayList<String>(), addCurationInfo);
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}
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/**
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*
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* @param openaireId for result
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @param orderField
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* @param descending
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByResult(String openaireId, Integer limit, Integer offset,String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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log.info("Fetching claims by result ID:"+openaireId);
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaimsByResult(openaireId, limit, offset,keyword, orderField, descending,types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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/**
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*
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* @param openaireId
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByContext(String openaireId, Integer limit, Integer offset, boolean addCurationInfo) throws Exception, SQLStoreException {
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return fetchClaimsByContext(openaireId,limit,offset,null,"claim.claim_date",true, new ArrayList<String>(), addCurationInfo);
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}
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/**
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*
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* @param openaireId
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* @param limit returns at most 'limit' claims (use -1 or null for no limit)
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* @param offset returns claims after 'offset' position (null for no offset)
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* @param orderField
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* @param descending
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* @return
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* @throws Exception
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*/
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public List<Claim> fetchClaimsByContext(String openaireId, Integer limit, Integer offset, String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception, SQLStoreException {
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log.info("Fetching claims by context ID:"+openaireId);
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateFetchClaimsByContext(openaireId, limit, offset,keyword,orderField, descending,types, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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public Claim fetchClaimById(String claimId, boolean addCurationInfo) throws Exception, SQLStoreException {
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ArrayList<Object> params = new ArrayList<>();
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String query = queryGenerator.generateSelectClaimQuery(claimId, params);
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ResultSet rs = sqlDAO.executePreparedQuery(query, params);
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if(rs.next()) {
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String sourceType =rs.getString(2);
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// String sourceId =rs.getString(3);
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String targetType =rs.getString(4);
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// String targetId =rs.getString(5);
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ArrayList<Object> params2 = new ArrayList<>();
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String query2 = queryGenerator.generateFetchClaimsByClaimId(claimId,sourceType,targetType, params2);
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rs = sqlDAO.executePreparedQuery(query2, params2);
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}else{
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log.info("No claim with id : "+ claimId+"\n");
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}
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Claim claim = null;
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List<Claim> claims=fetchClaimsByResultSet(rs, addCurationInfo);
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if(claims.size()==1){
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claim=claims.get(0);
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}
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return claim;
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}
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/*
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public List<Claim> fetchClaimsByToken(String token, String email, Integer limit, Integer offset, boolean addCurationInfo) throws Exception {
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return fetchClaimsByToken(token, email, limit, offset, null, "claim.claim_date",true, new ArrayList<String>(), addCurationInfo);
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}
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public List<Claim> fetchClaimsByToken(String token, String email, Integer limit, Integer offset, String keyword, String orderField, boolean descending, List<String> types, boolean addCurationInfo) throws Exception {
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ResultSet rs = sqlDAO.executePreparedQuery(queryGenerator.generateFetchClaimsByProjectToken(token, email, limit, offset, keyword, orderField,descending,types));
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return fetchClaimsByResultSet(rs, addCurationInfo);
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}
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*/
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public List<Claim> fetchClaimsByResultSet(ResultSet rs, boolean addCurationInfo) throws Exception {
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List<Claim> claims= new ArrayList<Claim>();
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while(rs.next()) {
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Claim claim= new Claim();
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claims.add(claim);
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Integer i = 1;
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claim.setId(rs.getString(i++));
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DateFormat format = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
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Date date = format.parse(rs.getString(i++));
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claim.setDate(date);
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claim.setUserMail(rs.getString(i++));
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claim.setSourceType(rs.getString(i++));
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claim.setTargetType(rs.getString(i++));
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claim.setSemantics(rs.getString(i++));
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if(addCurationInfo) {
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String curationDate =rs.getString(i++);
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if(curationDate != null) {
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date = format.parse(curationDate);
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claim.setCurationDate(date);
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}
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claim.setCuratedBy(rs.getString(i++));
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}else{
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i+=2;
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}
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claim.setApproved(rs.getBoolean(i++));
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claim.setClaimedInDashboard(rs.getString(i++));
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claim.setSource(buildEntity(rs,i,claim.getSourceType()));
|
|
325
|
claim.setTarget(buildEntity(rs,i+12,claim.getTargetType()));
|
|
326
|
|
|
327
|
}
|
|
328
|
return claims;
|
|
329
|
}
|
|
330
|
public Integer countClaimsByResultSet(ResultSet rs) throws Exception {
|
|
331
|
|
|
332
|
while(rs.next()) {
|
|
333
|
return rs.getInt(1);
|
|
334
|
}
|
|
335
|
return null;
|
|
336
|
}
|
|
337
|
public List<Project> getProjectsByResultSet(ResultSet rs, boolean addCurationInfo) throws Exception {
|
|
338
|
List<Project> projects= new ArrayList<Project>();
|
|
339
|
while(rs.next()) {
|
|
340
|
Project project=(Project)(buildEntity(rs, 1, ClaimUtils.PROJECT));
|
|
341
|
projects.add(project);
|
|
342
|
}
|
|
343
|
return projects;
|
|
344
|
}
|
|
345
|
public List<Context> getContextsByResultSet(ResultSet rs, boolean addCurationInfo) throws Exception {
|
|
346
|
List<Context> contexts= new ArrayList<Context>();
|
|
347
|
while(rs.next()) {
|
|
348
|
Context context=(Context)(buildEntity(rs, 1, ClaimUtils.CONTEXT));
|
|
349
|
contexts.add(context);
|
|
350
|
}
|
|
351
|
return contexts;
|
|
352
|
}
|
|
353
|
public Integer countAllClaims(String keyword, List<String> types) throws Exception, SQLStoreException {
|
|
354
|
ArrayList<Object> params = new ArrayList<>();
|
|
355
|
String query = queryGenerator.generateCountAllClaims(keyword,types, params);
|
|
356
|
ResultSet rs = sqlDAO.executePreparedQuery(query, params);
|
|
357
|
return countClaimsByResultSet(rs);
|
|
358
|
}
|
|
359
|
public Integer countClaimsByUser(String user,String keyword, List<String> types) throws Exception, SQLStoreException {
|
|
360
|
ArrayList<Object> params = new ArrayList<>();
|
|
361
|
String query = queryGenerator.generateCountByUser(user,keyword,types, params);
|
|
362
|
ResultSet rs = sqlDAO.executePreparedQuery(query, params);
|
|
363
|
return countClaimsByResultSet(rs);
|
|
364
|
}
|
|
365
|
public Integer countClaimsByProject(String projectId,String keyword, List<String> types) throws Exception, SQLStoreException {
|
|
366
|
ArrayList<Object> params = new ArrayList<>();
|
|
367
|
String query = queryGenerator.generateCountByProject(projectId,keyword,types, params);
|
|
368
|
ResultSet rs = sqlDAO.executePreparedQuery(query, params);
|
|
369
|
return countClaimsByResultSet(rs);
|
|
370
|
}
|
|
371
|
/*
|
|
372
|
public Integer countClaimsByProjectToken(String projectToken,String email,String keyword, List<String> types)throws Exception {
|
|
373
|
ResultSet rs = sqlDAO.executePreparedQuery(queryGenerator.generateCountByProjectToken(projectToken,email,keyword,types));
|
|
374
|
return countClaimsByResultSet(rs);
|
|
375
|
}
|
|
376
|
*/
|
|
377
|
public Integer countClaimsByFunder(String funderId,String keyword, List<String> types) throws Exception, SQLStoreException {
|
|
378
|
ArrayList<Object> params = new ArrayList<>();
|
|
379
|
String query = queryGenerator.generateCountByFunder(funderId,keyword,types, params);
|
|
380
|
ResultSet rs = sqlDAO.executePreparedQuery(query, params);
|
|
381
|
return countClaimsByResultSet(rs);
|
|
382
|
}
|
|
383
|
public Integer countClaimsByResult(String resultId,String keyword, List<String> types) throws Exception, SQLStoreException {
|
|
384
|
ArrayList<Object> params = new ArrayList<>();
|
|
385
|
String query = queryGenerator.generateCountByResult(resultId,keyword,types, params);
|
|
386
|
ResultSet rs = sqlDAO.executePreparedQuery(query, params);
|
|
387
|
return countClaimsByResultSet(rs);
|
|
388
|
}
|
|
389
|
public Integer countClaimsByContext(String contextId,String keyword, List<String> types) throws Exception, SQLStoreException {
|
|
390
|
ArrayList<Object> params = new ArrayList<>();
|
|
391
|
String query = queryGenerator.generateCountByContext(contextId,keyword,types, params);
|
|
392
|
ResultSet rs = sqlDAO.executePreparedQuery(query, params);
|
|
393
|
return countClaimsByResultSet(rs);
|
|
394
|
}
|
|
395
|
public Integer countClaimsByDate(String dateFrom,String dateTo,String keyword, List<String> types) throws Exception, SQLStoreException {
|
|
396
|
ArrayList<Object> params = new ArrayList<>();
|
|
397
|
String query = queryGenerator.generateCountByDate(dateFrom,dateTo,keyword,types, params);
|
|
398
|
ResultSet rs = sqlDAO.executePreparedQuery(query, params);
|
|
399
|
return countClaimsByResultSet(rs);
|
|
400
|
}
|
|
401
|
|
|
402
|
public List<Project> getAllclaimedProjects(boolean addCurationInfo) throws Exception, SQLStoreException {
|
|
403
|
ResultSet rs = sqlDAO.executePreparedQuery(queryGenerator.generateFetchAllProjectsQuery());
|
|
404
|
return getProjectsByResultSet(rs,addCurationInfo);
|
|
405
|
}
|
|
406
|
public List<Context> getAllclaimedContexts( boolean addCurationInfo) throws Exception, SQLStoreException {
|
|
407
|
ResultSet rs = sqlDAO.executePreparedQuery(queryGenerator.generateFetchAllContextsQuery());
|
|
408
|
return getContextsByResultSet(rs,addCurationInfo);
|
|
409
|
}
|
|
410
|
/**
|
|
411
|
*
|
|
412
|
* @param rs
|
|
413
|
* @param index
|
|
414
|
* @return
|
|
415
|
* @throws SQLException
|
|
416
|
*/
|
|
417
|
private static Result buildResult(ResultSet rs, Integer index) throws SQLException {
|
|
418
|
Result result = new Result();
|
|
419
|
result.setOpenaireId(rs.getString(index));
|
|
420
|
result.setTitle(rs.getString(index + 1));
|
|
421
|
result.setResultType(rs.getString(index + 2));
|
|
422
|
result.setDoi(rs.getString(index + 3));
|
|
423
|
result.setOrcidworkid(rs.getString(index + 4));
|
|
424
|
result.setAccessRights(rs.getString(index + 5));
|
|
425
|
result.setEmbargoEndDate(rs.getString(index + 6));
|
|
426
|
result.setBestLicense(rs.getString(index + 7));
|
|
427
|
result.setExternalUrl(rs.getString(index + 8));
|
|
428
|
result.setCollectedFrom(rs.getString(index + 9));
|
|
429
|
result.setRecordPath(rs.getString(index + 10));
|
|
430
|
result.setRecordFormat(rs.getString(index + 11));
|
|
431
|
|
|
432
|
return result;
|
|
433
|
|
|
434
|
}
|
|
435
|
private static Project buildProject(ResultSet rs, Integer index) throws SQLException {
|
|
436
|
Project project = new Project();
|
|
437
|
project.setOpenaireId(rs.getString(index));
|
|
438
|
project.setName(rs.getString(index + 1));
|
|
439
|
project.setAcronym(rs.getString(index + 2));
|
|
440
|
project.setFunderId(rs.getString(index + 3));
|
|
441
|
project.setFunderName(rs.getString(index + 4));
|
|
442
|
project.setFunderShortName(rs.getString(index + 5));
|
|
443
|
String contactP = rs.getString(index + 7);
|
|
444
|
project.setContactEmails(new ArrayList<String>());
|
|
445
|
if(contactP != null) {
|
|
446
|
for (String s : contactP.split(",")) {
|
|
447
|
project.getContactEmails().add(s);
|
|
448
|
}
|
|
449
|
}
|
|
450
|
|
|
451
|
return project;
|
|
452
|
|
|
453
|
}
|
|
454
|
private static Context buildContext(ResultSet rs, Integer index) throws SQLException {
|
|
455
|
Context context = new Context();
|
|
456
|
context.setOpenaireId(rs.getString(index));
|
|
457
|
context.setTitle(rs.getString(index + 1));
|
|
458
|
return context;
|
|
459
|
|
|
460
|
}
|
|
461
|
private static OpenaireEntity buildEntity(ResultSet rs, Integer index, String type) throws SQLException {
|
|
462
|
OpenaireEntity openaireEntity = null;
|
|
463
|
if(type == null){
|
|
464
|
openaireEntity = null;
|
|
465
|
}else if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.SOFTWARE)||type.equals(ClaimUtils.OTHER)) {
|
|
466
|
openaireEntity= buildResult(rs, index);
|
|
467
|
}else if(type.equals(ClaimUtils.PROJECT)){
|
|
468
|
openaireEntity = buildProject(rs,index);
|
|
469
|
}else if(type.equals(ClaimUtils.CONTEXT)){
|
|
470
|
openaireEntity = buildContext(rs,index);
|
|
471
|
}
|
|
472
|
return openaireEntity;
|
|
473
|
}
|
|
474
|
|
|
475
|
public SqlDAO getSqlDAO() {
|
|
476
|
return sqlDAO;
|
|
477
|
}
|
|
478
|
|
|
479
|
public void setSqlDAO(SqlDAO sqlDAO) {
|
|
480
|
this.sqlDAO = sqlDAO;
|
|
481
|
}
|
|
482
|
|
|
483
|
public QueryGenerator getQueryGenerator() {
|
|
484
|
return queryGenerator;
|
|
485
|
}
|
|
486
|
|
|
487
|
public void setQueryGenerator(QueryGenerator queryGenerator) {
|
|
488
|
this.queryGenerator = queryGenerator;
|
|
489
|
}
|
|
490
|
}
|