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package eu.dnetlib.repo.manager.service;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.api.functionality.ValidatorServiceException;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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import eu.dnetlib.domain.enabling.Vocabulary;
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import eu.dnetlib.domain.functionality.validator.JobForValidation;
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import eu.dnetlib.repo.manager.domain.*;
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import eu.dnetlib.repo.manager.exception.ResourceNotFoundException;
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import eu.dnetlib.repo.manager.utils.Converter;
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import gr.uoa.di.driver.enabling.vocabulary.VocabularyLoader;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.log4j.Logger;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.json.JSONObject;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.core.ParameterizedTypeReference;
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import org.springframework.http.*;
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import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
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import org.springframework.security.core.Authentication;
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import org.springframework.security.core.context.SecurityContextHolder;
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import org.springframework.stereotype.Service;
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import org.springframework.web.client.RestClientException;
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import org.springframework.web.client.RestTemplate;
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import org.springframework.web.util.UriComponents;
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import org.springframework.web.util.UriComponentsBuilder;
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import javax.annotation.PostConstruct;
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import java.io.IOException;
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import java.sql.Timestamp;
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import java.util.*;
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import java.util.concurrent.ConcurrentHashMap;
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import java.util.stream.Collectors;
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@Service("repositoryService")
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public class RepositoryServiceImpl implements RepositoryService {
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    @Value("${api.baseAddress}")
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    private String baseAddress;
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    @Value("${services.repo-manager.adminEmail}")
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    private String adminEmail;
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    @Autowired
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    RestTemplate restTemplate;
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    private HttpHeaders httpHeaders;
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    private final String[] vocabularyNames = {"dnet:countries", "dnet:datasource_typologies", "dnet:compatibilityLevel"};
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    private static final Logger LOGGER = Logger.getLogger(RepositoryServiceImpl.class);
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    @Value("${services.repomanager.usageStatisticsDiagramsBaseURL}")
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    private String usageStatisticsDiagramsBaseURL;
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    @Value("${services.repomanager.usageStatisticsNumbersBaseURL}")
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    private String usageStatisticsNumbersBaseURL;
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    @Autowired
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    private VocabularyLoader vocabularyLoader;
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    @Autowired
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    private PiWikService piWikService;
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    @Autowired
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    private EmailUtils emailUtils;
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    @Autowired
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    ValidatorService validatorService;
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    private Map<String, Vocabulary> vocabularyMap = new ConcurrentHashMap<>();
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    private Map<String, String> countriesMap = new HashMap<>();
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    private Map<String, String> inverseCountriesMap = new HashMap<>();
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    private static Map<String,List<String>> dataSourceClass = new HashMap<>();
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    private static Map<String,String> invertedDataSourceClass = new HashMap<>();
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    @PostConstruct
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    private void init() {
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        LOGGER.debug("Initialization method of repository api!");
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        LOGGER.debug("Updated version!");
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        dataSourceClass.put("opendoar",Arrays.asList("pubsrepository::institutional","pubsrepository::thematic","pubsrepository::unknown","pubsrepository::mock"));
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        dataSourceClass.put("re3data", Collections.singletonList("datarepository::unknown"));
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        dataSourceClass.put("journal", Collections.singletonList("pubsrepository::journal"));
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        dataSourceClass.put("aggregator",Arrays.asList("aggregator::pubsrepository::institutional","aggregator::pubsrepository::journals","aggregator::datarepository", "aggregator::pubsrepository::unknown"));
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        invertedDataSourceClass.put("pubsrepository::institutional","opendoar");
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        invertedDataSourceClass.put("pubsrepository::thematic","opendoar");
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        invertedDataSourceClass.put("pubsrepository::unknown","opendoar");
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        invertedDataSourceClass.put("pubsrepository::mock","opendoar");
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        invertedDataSourceClass.put("datarepository::unknown","re3data");
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        invertedDataSourceClass.put("pubsrepository::journal","journal");
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        invertedDataSourceClass.put("aggregator::pubsrepository::institutional","aggregator");
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        invertedDataSourceClass.put("aggregator::pubsrepository::journals","aggregator");
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        invertedDataSourceClass.put("aggregator::datarepository","aggregator");
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        invertedDataSourceClass.put("aggregator::pubsrepository::unknown","aggregator");
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        httpHeaders = new HttpHeaders();
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        httpHeaders.setContentType(MediaType.APPLICATION_JSON_UTF8);
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        for (String vocName : vocabularyNames) {
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            vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
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        }
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        Country[] countries = getCountries();
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        for (Country c : countries) {
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            countriesMap.put(c.getName(), c.getCode());
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            inverseCountriesMap.put(c.getCode(), c.getName());
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        }
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    }
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    @Override
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    public Country[] getCountries() {
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        UriComponents uriComponents = UriComponentsBuilder
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                .fromHttpUrl(baseAddress + "/ds/countries")
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                .build().encode();
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        return restTemplate.getForObject(uriComponents.toUri(), Country[].class);
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    }
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    @Override
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    public List<RepositorySnippet> getRepositoriesByCountry(String country,
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                                                            String mode,
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                                                            Boolean managed) throws JSONException, IOException {
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        LOGGER.debug("Getting repositories by country!");
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        int page = 0;
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        int size = 100;
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        List<RepositorySnippet> resultSet = new ArrayList<>();
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        ObjectMapper mapper = new ObjectMapper();
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        String filterKey = "UNKNOWN";
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        if (mode.equalsIgnoreCase("opendoar"))
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            filterKey = "openaire____::opendoar";
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        else if (mode.equalsIgnoreCase("re3data"))
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            filterKey = "openaire____::re3data";
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        LOGGER.debug("Country code equals : " + country);
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        LOGGER.debug("Filter mode equals : " + filterKey);
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        UriComponents uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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        RequestFilter requestFilter = new RequestFilter();
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        requestFilter.setCountry(country);
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        requestFilter.setCollectedfrom(filterKey);
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        try{
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            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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            while (jsonArray.length() > 0 ) {
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                resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
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                        mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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                page += 1;
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                uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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                rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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                jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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            }
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            return resultSet;
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        }catch (Exception e){
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            LOGGER.debug("Exception on getRepositoriesByCountry" , e);
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//            emailUtils.reportException(e);
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            throw e;
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        }
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    }
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    public List<RepositorySnippet> searchRegisteredRepositories(String country, String typology, String englishName,
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            String officialName, String requestSortBy, String order, int page, int pageSize) throws Exception {
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        LOGGER.debug("Searching registered repositories");
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        List<RepositorySnippet> resultSet = new ArrayList<>();
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        ObjectMapper mapper = new ObjectMapper();
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        UriComponents uriComponents = searchRegisteredDatasource(requestSortBy, order, Integer.toString(page), Integer.toString(pageSize));
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        RequestFilter requestFilter = new RequestFilter();
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        requestFilter.setCountry(country);
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        requestFilter.setTypology(typology);
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        requestFilter.setOfficialname(officialName);
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        requestFilter.setEnglishname(englishName);
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        try {
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            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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            resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),  mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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             return resultSet;
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        }catch (Exception e){
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            LOGGER.error("Error searching registered datasources" , e);
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            throw e;
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        }
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    }
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    private Repository updateRepositoryInfo(Repository r) throws JSONException {
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        /*
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        * from datasource class
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        * we get the datasource type form the inverted map
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        * */
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        r.setDatasourceType(getRepositoryType(r.getDatasourceClass()));
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        r.setInterfaces(this.getRepositoryInterface(r.getId()));
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        r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
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        r.setCountryName(getCountryName(r.getCountryCode()));
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        return r;
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    }
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    private Collection<Repository> getRepositoriesByMode(String mode, List<Repository> rs) {
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        List<Repository> reps = new ArrayList<>();
224
        for (Repository r : rs) {
225
            if (r.getCollectedFrom() != null && r.getCollectedFrom().equals(mode))
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                reps.add(r);
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228
        }
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        return reps;
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    }
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    @Override
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    public List<Repository> getRepositoriesOfUser(String userEmail,
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                                                  String page,
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                                                  String size) throws JSONException {
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        LOGGER.debug("Retreiving repositories of user : " + userEmail );
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        UriComponents uriComponents = searchDatasource(page,size);
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        RequestFilter requestFilter = new RequestFilter();
240
        requestFilter.setRegisteredby(userEmail);
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        try{
243
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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            List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
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            for (Repository r : repos)
247
                r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
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            return repos;
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        }catch (Exception e){
250
            LOGGER.debug("Exception on getRepositoriesOfUser" , e);
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            emailUtils.reportException(e);
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            throw e;
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        }
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    }
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    @Override
257
    public List<RepositorySnippet> getRepositoriesSnippetOfUser(String userEmail, String page, String size) throws IOException, JSONException {
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        List<RepositorySnippet> resultSet = new ArrayList<>();
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        ObjectMapper mapper = new ObjectMapper();
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        UriComponents uriComponents = searchSnipperDatasource(page,size);
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        RequestFilter requestFilter = new RequestFilter();
263
        requestFilter.setRegisteredby(userEmail);
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265
        try{
266
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
267
            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
268
            while (jsonArray.length() > 0 ) {
269
                resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
270
                        mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
271
                page += 1;
272
                uriComponents = searchSnipperDatasource(page,size);
273
                rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
274
                jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
275
            }
276
            resultSet.parallelStream().forEach(repositorySnippet -> {
277
                repositorySnippet.setPiwikInfo(piWikService.getPiwikSiteForRepo(repositorySnippet.getId()));
278
            });
279
            return resultSet;
280
        }catch (Exception e){
281
            LOGGER.debug("Exception on getRepositoriesByCountry" , e);
282
            throw e;
283
        }
284
    }
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    @Override
287
    public Repository getRepositoryById(String id) throws JSONException,ResourceNotFoundException {
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289
        LOGGER.debug("Retreiving repositories with id : " + id );
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        Repository repo = null;
291
        UriComponents uriComponents = searchDatasource("0","100");
292
        RequestFilter requestFilter = new RequestFilter();
293
        requestFilter.setId(id);
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295
        try{
296
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
297
            JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
298

    
299
            if(jsonArray.length() == 0)
300
                throw new ResourceNotFoundException();
301

    
302
            repo = Converter.jsonToRepositoryObject(jsonArray.getJSONObject(0));
303
            return updateRepositoryInfo(repo);
304
        }catch (JSONException e){
305
            LOGGER.debug("Exception on getRepositoryById" , e);
306
            emailUtils.reportException(e);
307
            throw e;
308
        }
309

    
310
    }
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    @Override
314
    public List<AggregationDetails> getRepositoryAggregations(String id, int from, int size) throws JSONException {
315

    
316
        LOGGER.debug("Retreiving aggregations for repository with id : " + id );
317
        UriComponents uriComponents = searchDatasource(from+"",size+"");
318
        RequestFilter requestFilter = new RequestFilter();
319
        requestFilter.setId(id);
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321
        List<AggregationDetails> aggregationHistory = new ArrayList<>();
322

    
323
        try {
324
            long start = System.currentTimeMillis();
325
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
326
            long end = System.currentTimeMillis();
327

    
328
            System.out.println("Aggregations request through rest template took " + (end-start)+"ms");
329
            JSONObject repository = new JSONObject(rs);
330

    
331
            if(repository.getJSONArray("datasourceInfo").length() == 0)
332
                return aggregationHistory;
333

    
334
            start = System.currentTimeMillis();
335
            aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
336
            end = System.currentTimeMillis();
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338
            System.out.println("Getting aggregations history from json " + (end-start)+"ms");
339
            return aggregationHistory.size() == 0? aggregationHistory : aggregationHistory.stream()
340
                                                    .sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
341
                                                    .limit(size)
342
                                                    .collect(Collectors.toList());
343
        } catch (JSONException e) {
344
            LOGGER.debug("Exception on getRepositoryAggregations" , e);
345
            emailUtils.reportException(e);
346
            throw e;
347
        }
348

    
349
    }
350

    
351
    @Override
352
    public Map<String, List<AggregationDetails>> getRepositoryAggregationsByYear(String id) throws JSONException {
353
        LOGGER.debug("Retreiving aggregations (by year) for repository with id : " + id );
354
        UriComponents uriComponents = searchDatasource("0","100");
355
        RequestFilter requestFilter = new RequestFilter();
356
        requestFilter.setId(id);
357

    
358
        List<AggregationDetails> aggregationHistory = new ArrayList<>();
359
        Map<String, List<AggregationDetails>> aggregationByYear = new HashMap<>();
360
        try {
361
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
362
            JSONObject repository = new JSONObject(rs);
363

    
364
            if(repository.getJSONArray("datasourceInfo").length() == 0)
365
                return aggregationByYear;
366

    
367
            aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
368
            return aggregationHistory.size() == 0? aggregationByYear:createYearMap(aggregationHistory);
369

    
370
        } catch (JSONException e) {
371
            LOGGER.debug("Exception on getRepositoryAggregations" , e);
372
            emailUtils.reportException(e);
373
            throw e;
374
        }
375
    }
376

    
377
    private Map<String,List<AggregationDetails>> createYearMap(List<AggregationDetails> aggregationHistory) {
378
        Map<String, List<AggregationDetails>> aggregationByYear;
379
        aggregationHistory = aggregationHistory.stream()
380
                            .sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
381
                            .collect(Collectors.toList());
382

    
383
       return aggregationHistory.stream()
384
                            .collect(Collectors.groupingBy(AggregationDetails::getYear));
385
    }
386

    
387

    
388
    @Override
389
    public List<Repository> getRepositoriesByName(String name,
390
                                                  String page,
391
                                                  String size) throws JSONException {
392

    
393
        LOGGER.debug("Retreiving  repositories with official name : " + name );
394
        UriComponents uriComponents = searchDatasource("0","100");
395
        RequestFilter requestFilter = new RequestFilter();
396
        requestFilter.setOfficialname(name);
397

    
398
        try{
399
            String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
400
            List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
401
            for (Repository r : repos)
402
                updateRepositoryInfo(r);
403
            return repos;
404
        }catch (Exception e){
405
            LOGGER.debug("Exception on getRepositoriesByName" , e);
406
            emailUtils.reportException(e);
407
            throw e;
408
        }
409

    
410
    }
411

    
412
    @Override
413
    public List<RepositoryInterface> getRepositoryInterface(String id) throws JSONException {
414

    
415
        UriComponents uriComponents = UriComponentsBuilder
416
                .fromHttpUrl(baseAddress + "/ds/api/")
417
                .path("/{id}")
418
                .build().expand(id).encode();
419

    
420
        try{
421
            String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
422
            return Converter.jsonToRepositoryInterfaceList(new JSONObject(rs));
423
        }catch (Exception e ){
424
            LOGGER.debug("Exception on getRepositoryInterface" , e);
425
            emailUtils.reportException(e);
426
            throw e;
427
        }
428

    
429
    }
430

    
431
    @Override
432
    public Repository addRepository(String datatype,
433
                                    Repository repository) throws Exception {
434

    
435
        LOGGER.debug("storing " + datatype + " repository with id: " + repository.getId());
436

    
437
        repository.setCountryCode(countriesMap.get(repository.getCountryName()));
438
        repository.setActivationId(UUID.randomUUID().toString());
439
        repository.setCollectedFrom("infrastruct_::openaire");
440

    
441
        if (datatype.equals("journal")) {
442
            repository.setId("openaire____::issn" + repository.getIssn());
443
            repository.setNamespacePrefix("issn" + repository.getIssn());
444
            this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
445
        }else if (datatype.equals("aggregator")) {
446
            repository.setId("openaire____::" + com.unboundid.util.Base64.encode(repository.getOfficialName()));
447
            repository.setNamespacePrefix(DigestUtils.md5Hex(repository.getOfficialName()).substring(0,12));
448
            this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
449
        }else {
450
            this.latentUpdate(repository, SecurityContextHolder.getContext().getAuthentication());
451
        }
452

    
453
        return repository;
454
    }
455

    
456
    /* update method acting as add -> send email with registration topic/body*/
457
    private Repository latentUpdate(Repository repository, Authentication authentication) throws Exception {
458
        UriComponents uriComponents = UriComponentsBuilder
459
                .fromHttpUrl(baseAddress + "/ds/update/")
460
                .build()
461
                .encode();
462

    
463
        try {
464
            String json_repository = Converter.repositoryObjectToJson(repository);
465
            LOGGER.debug("JSON to add(update) -> " + json_repository);
466

    
467
            HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
468
            ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
469

    
470
            if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
471
                emailUtils.sendUserRegistrationEmail(repository, authentication);
472
                emailUtils.sendAdminRegistrationEmail(repository, authentication);
473
            } else
474
                LOGGER.debug(responseEntity.getBody().toString());
475

    
476
            return repository;
477
        } catch (Exception e) {
478
            LOGGER.debug("Exception on updateRepository" , e);
479
            emailUtils.reportException(e);
480
            throw e;
481
        }
482

    
483

    
484
    }
485

    
486
    @Override
487
    public Repository updateRepository(Repository repository,Authentication authentication) throws Exception {
488
        UriComponents uriComponents = UriComponentsBuilder
489
                .fromHttpUrl(baseAddress + "/ds/update/")
490
                .build()
491
                .encode();
492

    
493
        try {
494
            String json_repository = Converter.repositoryObjectToJson(repository);
495

    
496
            LOGGER.debug("JSON to update -> " + json_repository);
497

    
498
            HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
499
            ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity
500
                    , ResponseEntity.class);
501

    
502
            if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
503
                emailUtils.sendUserUpdateRepositoryInfoEmail(repository, authentication);
504
                emailUtils.sendAdminUpdateRepositoryInfoEmail(repository, authentication);
505
            } else
506
                LOGGER.debug(responseEntity.getBody().toString());
507

    
508
            return repository;
509
        } catch (Exception e) {
510
            LOGGER.debug("Exception on updateRepository" , e);
511
            emailUtils.reportException(e);
512
            throw e;
513
        }
514
    }
515

    
516
    private void storeRepository(Repository repository, Authentication authentication) throws Exception {
517

    
518
        Date utilDate = new Date();
519
        Timestamp date = new Timestamp(utilDate.getTime());
520
        repository.setDateOfCollection(date);
521
        repository.setAggregator("OPENAIRE");
522
        repository.setCountryCode(countriesMap.get(repository.getCountryName()));
523

    
524
        UriComponents uriComponents = UriComponentsBuilder
525
                .fromHttpUrl(baseAddress + "/ds/add/")
526
                .build()
527
                .encode();
528
        String json_repository = Converter.repositoryObjectToJson(repository);
529
        HttpEntity<String> httpEntity = new HttpEntity <String> (json_repository,httpHeaders);
530
        ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
531

    
532
        if(responseEntity.getStatusCode().equals(HttpStatus.OK)) {
533
            emailUtils.sendUserRegistrationEmail(repository, authentication);
534
            emailUtils.sendAdminRegistrationEmail(repository, authentication);
535
        } else {
536
            LOGGER.debug(responseEntity.getBody().toString());
537
        }
538
    }
539

    
540
    @Override
541
    public void deleteRepositoryInterface(String id ,
542
                                          String registeredBy){
543
        UriComponents uriComponents = UriComponentsBuilder
544
                .fromHttpUrl(baseAddress + "/ds/api/")
545
                .path("/{id}")
546
                .build().expand(id).encode();
547
        LOGGER.debug(uriComponents.toUri());
548
        restTemplate.delete(uriComponents.toUri());
549
    }
550

    
551
    @Override
552
    public RepositoryInterface addRepositoryInterface(String datatype,
553
                                                      String repoId,
554
                                                      String registeredBy,
555
                                                      String comment, RepositoryInterface repositoryInterface) throws Exception {
556
        try {
557
            Repository e = this.getRepositoryById(repoId);
558
            repositoryInterface = createRepositoryInterface(e,repositoryInterface,datatype);
559
            String json_interface = Converter.repositoryInterfaceObjectToJson(e,repositoryInterface);
560

    
561
            UriComponents uriComponents = UriComponentsBuilder
562
                    .fromHttpUrl(baseAddress + "/ds/api/add/")
563
                    .build()
564
                    .encode();
565

    
566
            HttpEntity<String> httpEntity = new HttpEntity <> (json_interface,httpHeaders);
567

    
568
            restTemplate.postForObject(uriComponents.toUri(),httpEntity, String.class);
569

    
570
            emailUtils.sendAdminRegisterInterfaceEmail(e, comment, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
571
            emailUtils.sendUserRegisterInterfaceEmail(e, comment, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
572

    
573
            submitInterfaceValidation(e, registeredBy, repositoryInterface, false);
574

    
575
            return repositoryInterface;
576

    
577
        } catch (Exception e) {
578
            LOGGER.error("Exception on addRepositoryInterface" , e);
579
            emailUtils.reportException(e);
580
            throw e;
581
        }
582
    }
583

    
584
    @Override
585
    public RepositoryInterface updateRepositoryInterface(String repoId,
586
                                                         String registeredBy,
587
                                                         String comment, RepositoryInterface repositoryInterface) throws Exception {
588

    
589
        this.updateBaseUrl(repoId,repositoryInterface.getId(),repositoryInterface.getBaseUrl());
590
        this.updateCompliance(repoId,repositoryInterface.getId(),repositoryInterface.getCompliance());
591
        this.updateValidationSet(repoId,repositoryInterface.getId(),repositoryInterface.getAccessSet());
592

    
593
        Repository e = this.getRepositoryById(repoId);
594
        emailUtils.sendAdminUpdateInterfaceEmail(e, comment, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
595
        emailUtils.sendUserUpdateInterfaceEmail(e, comment, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
596
        submitInterfaceValidation(getRepositoryById(repoId),registeredBy,repositoryInterface,true);
597

    
598
        return repositoryInterface;
599
    }
600

    
601
    private void submitInterfaceValidation(Repository repo, String userEmail, RepositoryInterface iFace, boolean updateExisting) throws ValidatorServiceException {
602
        JobForValidation job = new JobForValidation();
603

    
604
        job.setActivationId(UUID.randomUUID().toString());
605
        job.setAdminEmails(Collections.singletonList(this.adminEmail));
606
        job.setBaseUrl(iFace.getBaseUrl());
607
        job.setDatasourceId(repo.getId());
608
        job.setDesiredCompatibilityLevel(iFace.getDesiredCompatibilityLevel());
609
        job.setInterfaceId(iFace.getId());
610
        job.setOfficialName(repo.getOfficialName());
611
        job.setRepoType(repo.getDatasourceType());
612
        job.setUserEmail(userEmail);
613
        job.setValidationSet((iFace.getAccessSet().isEmpty() ? "none" : iFace.getAccessSet()));
614
        job.setRecords(-1);
615
        job.setRegistration(!updateExisting);
616
        job.setUpdateExisting(updateExisting);
617

    
618
        this.validatorService.submitJobForValidation(job);
619
    }
620

    
621
    private RepositoryInterface createRepositoryInterface(Repository repo, RepositoryInterface iFace, String datatype) {
622

    
623
        iFace.setContentDescription("metadata");
624
        iFace.setCompliance("UNKNOWN");
625

    
626
        if (datatype.equals("re3data"))
627
            iFace.setAccessFormat("oai_datacite");
628
        else
629
            iFace.setAccessFormat("oai_dc");
630

    
631

    
632
        if (repo.getDatasourceClass() != null && !repo.getDatasourceClass().isEmpty())
633
            iFace.setTypology(repo.getDatasourceClass());
634
        else if (datatype.equalsIgnoreCase("journal"))
635
            iFace.setTypology("pubsrepository::journal");
636
        else if (datatype.equalsIgnoreCase("aggregator"))
637
            iFace.setTypology("aggregator::pubsrepository::unknown");
638
        else if (datatype.equalsIgnoreCase("opendoar"))
639
            iFace.setTypology("pubsrepository::unknown");
640
        else if (datatype.equalsIgnoreCase("re3data"))
641
            iFace.setTypology("datarepository::unknown");
642

    
643
        iFace.setRemovable(true);
644
        iFace.setAccessProtocol("oai");
645
        iFace.setMetadataIdentifierPath("//*[local-name()='header']/*[local-name()='identifier']");
646
        iFace.setId("api_________::" + repo.getId() + "::" + UUID.randomUUID().toString().substring(0, 8));
647
        if (iFace.getAccessSet() == null || iFace.getAccessSet().isEmpty()) {
648
            LOGGER.debug("set is empty: " + iFace.getAccessSet());
649
            iFace.removeAccessSet();
650
            iFace.setAccessSet("none");
651
        }
652
        return iFace;
653
    }
654

    
655
    @Override
656
    public List<String> getDnetCountries() {
657
        LOGGER.debug("Getting dnet-countries!");
658
        return Converter.readFile("countries.txt");
659
    }
660

    
661
    @Override
662
    public List<String> getTypologies() {
663
        return Converter.readFile("typologies.txt");
664
    }
665

    
666
    @Override
667
    public List<Timezone> getTimezones() {
668
        List<String> timezones =  Converter.readFile("timezones.txt");
669
        return Converter.toTimezones(timezones);
670
    }
671

    
672
    @Override
673
    public List<String> getUrlsOfUserRepos(String userEmail,
674
                                           String page,
675
                                           String size){
676
        UriComponents uriComponents = UriComponentsBuilder
677
                .fromHttpUrl(baseAddress + "/api/baseurl/")
678
                .path("/{page}/{size}")
679
                .build().expand(page,size).encode();
680

    
681
        try{
682
            RequestFilter requestFilter = new RequestFilter();
683
            requestFilter.setRegisteredby(userEmail);
684
            return Arrays.asList(restTemplate.postForObject(uriComponents.toUri(),requestFilter, String[].class));
685
        }catch (Exception e){
686
            LOGGER.debug("Exception on addRepositoryInterface" , e);
687
            emailUtils.reportException(e);
688
            throw e;
689
        }
690
    }
691

    
692
    @Override
693
    public List<String> getDatasourceVocabularies(String mode) {
694

    
695
        List<String> resultSet = new ArrayList<>();
696
        for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
697
            if (mode.equalsIgnoreCase("aggregator")) {
698
                if (entry.getKey().contains("aggregator"))
699
                    resultSet.add(entry.getValue());
700
            } else if (mode.equalsIgnoreCase("journal")) {
701
                if (entry.getKey().contains("journal"))
702
                    resultSet.add(entry.getValue());
703
            } else if (mode.equalsIgnoreCase("opendoar")) {
704
                if (entry.getKey().contains("pubsrepository"))
705
                    resultSet.add(entry.getValue());
706
            } else if (mode.equalsIgnoreCase("re3data")) {
707
                if (entry.getKey().contains("datarepository"))
708
                    resultSet.add(entry.getValue());
709
            }
710
        }
711

    
712

    
713
        return resultSet;
714
    }
715

    
716
    private Vocabulary getVocabulary(String vocName) {
717

    
718
        if (!vocabularyMap.containsKey(vocName)) {
719
            vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
720
        }
721
        return vocabularyMap.get(vocName);
722
    }
723

    
724

    
725
    @Override
726
    public Map<String, String> getCompatibilityClasses(String mode)  {
727

    
728
        LOGGER.debug("Getting compatibility classes for mode: " + mode);
729
        Map<String, String> retMap = new HashMap<String, String>();
730

    
731
        Map<String, String> compatibilityClasses = this.getVocabulary("dnet:compatibilityLevel").getAsMap();
732
        boolean foundData = false;
733
        for (Map.Entry<String, String> entry : compatibilityClasses.entrySet()) {
734
            if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_ALL))
735
                return compatibilityClasses;
736
            else if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA)) {
737
                if (entry.getKey().matches("^openaire[1-9].0_data$")) {
738
                    retMap.put(entry.getKey(), entry.getValue());
739
                    foundData = true;
740
                }
741
            } else {
742
                if (entry.getKey().matches("^openaire[1-9].0$") || entry.getKey().equals("driver"))
743
                    retMap.put(entry.getKey(), entry.getValue());
744
            }
745
        }
746

    
747
        //TODO TO BE REMOVED WHEN VOCABULARIES ARE UPDATED
748
        if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA) && !foundData)
749
            retMap.put("openaire2.0_data", "OpenAIRE Data (funded, referenced datasets)");
750

    
751
        return retMap;
752
    }
753

    
754
    @Override
755
    public Map<String, String> getDatasourceClasses(String mode)  {
756

    
757
        LOGGER.debug("Getting datasource classes for mode: " + mode);
758

    
759
        Map<String, String> retMap = new HashMap<String, String>();
760

    
761
        for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
762
            if (mode.equalsIgnoreCase("aggregator")) {
763
                if (entry.getKey().contains("aggregator"))
764
                    retMap.put(entry.getKey(), entry.getValue());
765
            } else if (mode.equalsIgnoreCase("journal")) {
766
                if (entry.getKey().contains("journal"))
767
                    retMap.put(entry.getKey(), entry.getValue());
768
            } else if (mode.equalsIgnoreCase("opendoar")) {
769
                if (entry.getKey().contains("pubsrepository"))
770
                    retMap.put(entry.getKey(), entry.getValue());
771
            } else if (mode.equalsIgnoreCase("re3data")) {
772
                if (entry.getKey().contains("datarepository"))
773
                    retMap.put(entry.getKey(), entry.getValue());
774
            }
775
        }
776
        return filterResults(retMap,mode);
777

    
778
    }
779

    
780
    private Map<String,String> filterResults(Map<String, String> map,String mode) {
781

    
782
        HashMap<String,String> filteredMap = new HashMap<>();
783
        for(String key:map.keySet())
784
            if(dataSourceClass.get(mode).contains(key))
785
                filteredMap.put(key,map.get(key));
786

    
787
        return filteredMap;
788
    }
789

    
790
    @Override
791
    public String getCountryName(String countryCode) {
792
        return inverseCountriesMap.get(countryCode);
793
    }
794

    
795
    @Override
796
    public MetricsInfo getMetricsInfoForRepository(String repoId) throws RepositoryServiceException {
797
        try {
798

    
799
            MetricsInfo metricsInfo = new MetricsInfo();
800
            metricsInfo.setDiagramsBaseURL(this.usageStatisticsDiagramsBaseURL);
801
            metricsInfo.setMetricsNumbers(getMetricsNumbers(getOpenAIREId(repoId)));
802
            return metricsInfo;
803

    
804
        } catch (Exception e) {
805
            LOGGER.error("Error while getting metrics info for repository: ", e);
806
            emailUtils.reportException(e);
807
            throw new RepositoryServiceException("General error", RepositoryServiceException.ErrorCode.GENERAL_ERROR);
808
        }
809
    }
810

    
811
    @Override
812
    public Map<String, String> getListLatestUpdate(String mode) throws JSONException {
813
        if(mode.equals("opendoar"))
814
            return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(0).getLastCollectionDate());
815
        else
816
            /*
817
            * first api of re3data has null value on collection date
818
            * */
819
            return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(1).getLastCollectionDate());
820
    }
821

    
822
    private void updateValidationSet(String repositoryId, String repositoryInterfaceId, String validationSet) throws Exception {
823
        UriComponents uriComponents = UriComponentsBuilder
824
                .fromHttpUrl(baseAddress + "/ds/api/oaiset")
825
                .queryParam("dsId",repositoryId)
826
                .queryParam("apiId",repositoryInterfaceId)
827
                .queryParam("oaiSet",validationSet)
828
                .build().encode();
829
       restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, null, ResponseEntity.class);
830

    
831
    }
832

    
833

    
834
    private void updateBaseUrl(String repositoryId, String repositoryInterfaceId, String baseUrl) {
835
        UriComponents uriComponents = UriComponentsBuilder
836
                .fromHttpUrl(baseAddress + "/ds/api/baseurl")
837
                .queryParam("dsId",repositoryId)
838
                .queryParam("apiId",repositoryInterfaceId)
839
                .queryParam("baseUrl",baseUrl)
840
                .build().encode();
841
        restTemplate.postForObject(uriComponents.toUri(),null,String.class);
842
    }
843

    
844
    private void updateCompliance(String repositoryId, String repositoryInterfaceId,String compliance) {
845
        UriComponents uriComponents = UriComponentsBuilder
846
                .fromHttpUrl(baseAddress + "/ds/api/compliance")
847
                .queryParam("dsId",repositoryId)
848
                .queryParam("apiId",repositoryInterfaceId)
849
                .queryParam("compliance",compliance)
850
                .build().encode();
851
        restTemplate.postForObject(uriComponents.toUri(),null,String.class);
852
    }
853

    
854
    private MetricsNumbers getMetricsNumbers(String openAIREID) throws BrokerException {
855

    
856
        //build the uri params
857
        UriComponentsBuilder builder = UriComponentsBuilder.fromHttpUrl(this.usageStatisticsNumbersBaseURL + openAIREID + "/clicks");
858

    
859
        //create new template engine
860
        RestTemplate template = new RestTemplate();
861
        template.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
862
        ResponseEntity<MetricsNumbers> resp;
863
        try {
864
            //communicate with endpoint
865
            resp = template.exchange(
866
                    builder.build().encode().toUri(),
867
                    HttpMethod.GET,
868
                    null,
869
                    new ParameterizedTypeReference<MetricsNumbers>() {
870
                    });
871
        } catch (RestClientException e) {
872
            LOGGER.debug("Exception on getMetricsNumbers" , e);
873
            emailUtils.reportException(e);
874
            throw e;
875
        }
876

    
877
        return resp.getBody();
878
    }
879

    
880
    private String getOpenAIREId(String repoId) {
881

    
882
        if (repoId != null && repoId.contains("::")) {
883
            return repoId.split("::")[0] + "::" + DigestUtils.md5Hex(repoId.split("::")[1]);
884
        }
885

    
886
        return null;
887
    }
888

    
889
    private UriComponents searchDatasource(String page,String size){
890

    
891
        return UriComponentsBuilder
892
                .fromHttpUrl(baseAddress + "/ds/search/")
893
                .path("/{page}/{size}/")
894
                .queryParam("requestSortBy","officialname")
895
                .queryParam("order","ASCENDING")
896
                .build().expand(page, size).encode();
897
    }
898

    
899
    private UriComponents searchSnipperDatasource(String page,String size){
900

    
901
        return UriComponentsBuilder
902
                .fromHttpUrl(baseAddress + "/ds/searchsnippet/")
903
                .path("/{page}/{size}/")
904
                .queryParam("requestSortBy","officialname")
905
                .queryParam("order","ASCENDING")
906
                .build().expand(page, size).encode();
907
    }
908

    
909
    private UriComponents searchRegisteredDatasource(String requestSortBy, String order, String page,String size){
910

    
911
        return UriComponentsBuilder
912
                .fromHttpUrl(baseAddress + "/ds/searchregistered/")
913
                .path("/{page}/{size}/")
914
                .queryParam("requestSortBy",requestSortBy)
915
                .queryParam("order",order)
916
                .build().expand(page, size).encode();
917
    }
918

    
919
    private String getRepositoryType(String typology){
920
        return invertedDataSourceClass.get(typology);
921
    }
922

    
923

    
924
}
(12-12/20)