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package eu.dnetlib.dli.resolver;
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import java.util.List;
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import com.ximpleware.AutoPilot;
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import com.ximpleware.VTDGen;
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import com.ximpleware.VTDNav;
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import eu.dnetlib.data.transform.VtdUtilityParser;
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import eu.dnetlib.dli.resolver.model.DLIResolvedObject;
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import eu.dnetlib.pid.resolver.model.ObjectType;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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/**
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* Created by sandro on 9/26/16.
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*/
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public class NCBINParser {
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private static final Log log = LogFactory.getLog(NCBINParser.class);
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public DLIResolvedObject parseRecord(final String record) {
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try {
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if (record == null)
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return null;
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final DLIResolvedObject parsedObject = new DLIResolvedObject();
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final VTDGen vg = new VTDGen();
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vg.setDoc(record.getBytes());
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vg.parse(true);
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final VTDNav vn = vg.getNav();
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final AutoPilot ap = new AutoPilot(vn);
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parsedObject.setTitles(VtdUtilityParser.getTextValue(ap, vn, "//GBSeq_definition"));
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final List<String> descriptions = VtdUtilityParser.getTextValue(ap, vn, "//GBSeq_comment");
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if (descriptions != null && descriptions.size() > 0) {
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parsedObject.setDescription(descriptions.get(0));
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}
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parsedObject.setType(ObjectType.dataset);
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return parsedObject;
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} catch (Throwable e) {
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log.error(String.format("Error on parsing document %s", record), e);
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return null;
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}
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}
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}
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