Revision 50035
Added by Sandro La Bruzzo over 6 years ago
| DLI.py | ||
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| 32 | 32 |
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| 33 | 33 |
base_dnet_url = "http://aggregator-dli.openaire.eu/dli/" |
| 34 | 34 |
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pid_resolver = {
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"pdb": "http://www.rcsb.org/pdb/explore/explore.do?structureId=%s", |
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"ncbi-n": "http://www.ncbi.nlm.nih.gov/gquery/?term=%s", |
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"pmid": "http://www.ncbi.nlm.nih.gov/pubmed/%s", |
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"pmcid": "http://www.ncbi.nlm.nih.gov/pmc/articles/%s", |
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"pubmedid": "http://www.ncbi.nlm.nih.gov/pubmed/%s", |
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"doi": "http://dx.doi.org/%s", |
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"genbank": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"nuccore": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"swiss-prot": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"arrayexpress": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"biomodels": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"bmrb": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"ena": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"geo": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"ensembl": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"mgi": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"bind": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"pride": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"ddbj": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"bioproject": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"embl": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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"sra": "http://www.ncbi.nlm.nih.gov/nucest/%s?report=genbank", |
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} |
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class InvalidUsage(Exception): |
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status_code = 400 |
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|
| ... | ... | |
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return "" |
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@app.route('/api/resolveId', methods=['get'])
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def resolveIdentifier(): |
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pid = request.form.get('pid')
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pid_type = request.form.get('pid_type')
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if pid_type!= None: |
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if pid_type.lower() in pid_resolver: |
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return pid_resolver[pid_type.lower()] % pid |
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else: |
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return "http://identifiers.org/%s:%s" % (pid_type, pid) |
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return "" |
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@app.route('/api/post/', methods=['post', 'get'])
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def query_post(): |
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action = None |
| ... | ... | |
| 108 | 146 |
if 'query' in request.form: |
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query = request.form['query'] |
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if 'start' in request.form: |
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start = int(request.form['start']) |
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start = 0 |
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try: |
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start = int(request.form.get('start',0))
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except: |
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pass |
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| 112 | 154 |
if 'filter' in request.form: |
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filter_key = request.form['filter'] |
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|
| ... | ... | |
| 128 | 170 |
app.logger.addHandler(dlilogger) |
| 129 | 171 |
monitor(app, port=8000) |
| 130 | 172 |
app.run() |
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# app.run(host="0.0.0.0") |
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