D-Net

creating IIS-CDH-5.3.0 branch

#1133 dropping useless workfing_dir creation for java nodes

replacing non standard dash character to '-'

replacing non standard dash character to '-'

fixing test run on jenkins: seting encoding explicitly to utf8

#1017 fixing expected citations

#1017 accepting ExtractedDocumentMetadata instead of DocumentText at PMC citation ingestion input. Aliging integration test and importer workflow.

#1017 introducing new PMC metadata ingestion currently extracing references, journal and pages fields.
Replacing DOM/XPath based citations ingestion with much faster SAX version. Changing pmidtooaid transformer utilizing ExtractedDocumentMetadata instead of parsing XML file. Enabling PMC metadata ingestion in common/import.

#840 moving IdentifierMapping from importer to common package

#840 renaming DeduplicationMapping to more generic IdentifierMapping

#757 introducing article type extraction along with unit test. Article type will be required for filtering out pmc duplicates and leaving only proper types

fixing sourceDocumentId which is now extracted from input DocumentText record conveying NLM

#757 fixing pmc citation matching test by providing proper input

#757 fixing pmc citation matching test by providing proper input

#757 fixing pmid and doi matching, fixing sourceDocumentId and destinationDocumentId generation

Commented out test in a stub of a solution to the task #576: Ingestion of metadata from EuropePMC.

Stub of a solution to the task #576: Ingestion of metadata from EuropePMC.

dir names in parameters should not contain nameNode

rename a field