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# Date Author Comment
39045 04/09/2015 11:26 PM Marek Horst

#1498 introducing major citations related refactoring including new generic direct citation matching moved to processing phase, introduced position field in all citations schemas and updated collapser taking position into account when merging citations details coming from 3 variuos sources: fuzzy citationmatching, direct citationmatching, references metadata

38183 13/07/2015 01:37 PM Marek Horst

#1435 making PMC XML parser less strict in terms of expected input elements or attributes: article-type is set to 'unknown' value when attribute not defined in XML main element

38172 13/07/2015 11:30 AM Marek Horst

#1431 fixing PMC XML records parser disallowing null reference type, reference value will be simply omitted

37875 19/06/2015 02:10 PM Marek Horst

#1381 porting pmc citations ingestion from cascading framework to pig. Moving code from icm-iis-ingest-pmc to icm-iis-transformers including itegration tests, removing obsolete scala code along with unneded dependencies. Switching subworkflow in primary workflow.

37830 17/06/2015 09:57 PM Marek Horst

updating job.properties

37356 21/05/2015 12:35 PM Marek Horst

#1329 setting affiliation string as raw text if parser produced empty Element object

37344 20/05/2015 06:49 PM Marek Horst

#1329 adding affiliations field in ExtractedDocumentMetadata PMC schema. Metadata extraction code refactoring by extracting code responsible for building Affiliation avro records to AffiliationBuilder class and sharing it with pmc ingestion. Implementing affiliations ingestion functionality in PmcXmlHandler covered with unit tests. Adding affiliations field support in ingest pmc metadata transformer.

36291 09/04/2015 07:10 PM Marek Horst

#1257 dropping schema generation related hacks in all map-reduce modules, switching to literal schema parameters

34945 02/03/2015 01:18 PM Marek Horst

updating job.properties

33123 01/12/2014 07:40 PM Marek Horst

#1017 fixing PMC and DOI identifiers retrieval from avro map: addressing by Utf8 objects not by String

33104 28/11/2014 06:13 PM Marek Horst

#1017 accepting ExtractedDocumentMetadata instead of DocumentText at PMC citation ingestion input. Aliging integration test and importer workflow.

32942 21/11/2014 05:50 PM Marek Horst

#1017 introducing new PMC metadata ingestion currently extracing references, journal and pages fields.
Replacing DOM/XPath based citations ingestion with much faster SAX version. Changing pmidtooaid transformer utilizing ExtractedDocumentMetadata instead of parsing XML file. Enabling PMC metadata ingestion in common/import.

32324 07/11/2014 02:57 PM Marek Horst

#955 fixing reference raw text generation for pretty printed NLM documents

31234 08/10/2014 07:45 PM Marek Horst

#840 renaming DeduplicationMapping to more generic IdentifierMapping

31225 08/10/2014 06:19 PM Marek Horst

#840 moving IdentifierMapping from importer to common package

31218 08/10/2014 06:12 PM Marek Horst

#840 renaming DeduplicationMapping to more generic IdentifierMapping

31117 06/10/2014 01:20 PM Marek Horst

#757 adding reducing phase for filtering out pmids by article type, mapping phase groups PmidMapping objects by pmid and at reducer phase duplicates will be filtered out

31116 06/10/2014 01:18 PM Marek Horst

#757 introducing article type extraction along with unit test. Article type will be required for filtering out pmc duplicates and leaving only proper types

30987 01/10/2014 06:38 PM Marek Horst

#757 fixing pmid and doi matching, fixing sourceDocumentId and destinationDocumentId generation

30986 01/10/2014 06:37 PM Marek Horst

#757 fixing pmid and doi matching, fixing sourceDocumentId and destinationDocumentId generation

30802 20/09/2014 02:19 PM Michal Oniszczuk

Stub of a solution to the task #576: Ingestion of metadata from EuropePMC.

30801 20/09/2014 02:18 PM Michal Oniszczuk

Refactored code to use the XPathEvaluator.fromString method.

30145 12/09/2014 03:16 PM Marek Horst

updating default job properties

29631 28/07/2014 09:45 PM Marek Horst

renaming workflow to ingest_pmc_plaintext

29097 14/07/2014 03:58 PM Marek Horst

replacing "result" string with Type.result.name()

28990 10/07/2014 04:15 PM Marek Horst

updating job.properties

28973 09/07/2014 05:55 PM mateusz.fedoryszak

dir names in parameters should not contain nameNode

28931 07/07/2014 05:52 PM mateusz.fedoryszak

rename a field