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# Date Author Comment
39086 08/09/2015 01:43 PM Marek Horst

renaming test resources to be compliant with windows file system naming requirements

39045 04/09/2015 11:26 PM Marek Horst

#1498 introducing major citations related refactoring including new generic direct citation matching moved to processing phase, introduced position field in all citations schemas and updated collapser taking position into account when merging citations details coming from 3 variuos sources: fuzzy citationmatching, direct citationmatching, references metadata

37875 19/06/2015 02:10 PM Marek Horst

#1381 porting pmc citations ingestion from cascading framework to pig. Moving code from icm-iis-ingest-pmc to icm-iis-transformers including itegration tests, removing obsolete scala code along with unneded dependencies. Switching subworkflow in primary workflow.

37813 16/06/2015 02:05 PM Marek Horst

#1370 making pmc ingestion integration tests run on dedicated test cluster istead of embedded mini-oozie container

37344 20/05/2015 06:49 PM Marek Horst

#1329 adding affiliations field in ExtractedDocumentMetadata PMC schema. Metadata extraction code refactoring by extracting code responsible for building Affiliation avro records to AffiliationBuilder class and sharing it with pmc ingestion. Implementing affiliations ingestion functionality in PmcXmlHandler covered with unit tests. Adding affiliations field support in ingest pmc metadata transformer.

35701 27/03/2015 06:18 AM Mateusz Kobos

Removing usage of working_dir from Java workflow node.

34693 20/02/2015 07:16 PM Marek Horst

#1133 dropping useless workfing_dir creation for java nodes

33133 02/12/2014 02:54 PM Marek Horst

replacing non standard dash character to '-'

33131 02/12/2014 12:48 PM Marek Horst

replacing non standard dash character to '-'

33130 02/12/2014 10:42 AM Marek Horst

fixing test run on jenkins: seting encoding explicitly to utf8

33125 01/12/2014 09:06 PM Marek Horst

#1017 fixing expected citations

33104 28/11/2014 06:13 PM Marek Horst

#1017 accepting ExtractedDocumentMetadata instead of DocumentText at PMC citation ingestion input. Aliging integration test and importer workflow.

32942 21/11/2014 05:50 PM Marek Horst

#1017 introducing new PMC metadata ingestion currently extracing references, journal and pages fields.
Replacing DOM/XPath based citations ingestion with much faster SAX version. Changing pmidtooaid transformer utilizing ExtractedDocumentMetadata instead of parsing XML file. Enabling PMC metadata ingestion in common/import.

31225 08/10/2014 06:19 PM Marek Horst

#840 moving IdentifierMapping from importer to common package

31218 08/10/2014 06:12 PM Marek Horst

#840 renaming DeduplicationMapping to more generic IdentifierMapping

31116 06/10/2014 01:18 PM Marek Horst

#757 introducing article type extraction along with unit test. Article type will be required for filtering out pmc duplicates and leaving only proper types

31031 02/10/2014 01:44 PM Marek Horst

fixing sourceDocumentId which is now extracted from input DocumentText record conveying NLM

31023 02/10/2014 01:08 PM Marek Horst

#757 fixing pmc citation matching test by providing proper input

31022 02/10/2014 01:08 PM Marek Horst

#757 fixing pmc citation matching test by providing proper input

30986 01/10/2014 06:37 PM Marek Horst

#757 fixing pmid and doi matching, fixing sourceDocumentId and destinationDocumentId generation

30804 22/09/2014 08:25 AM Michal Oniszczuk

Commented out test in a stub of a solution to the task #576: Ingestion of metadata from EuropePMC.

30802 20/09/2014 02:19 PM Michal Oniszczuk

Stub of a solution to the task #576: Ingestion of metadata from EuropePMC.

28973 09/07/2014 05:55 PM mateusz.fedoryszak

dir names in parameters should not contain nameNode

28931 07/07/2014 05:52 PM mateusz.fedoryszak

rename a field