Revision 37432
Added by Marek Horst almost 9 years ago
| workflow.xml | ||
|---|---|---|
| 27 | 27 |
<value>$UNDEFINED$</value> |
| 28 | 28 |
</property> |
| 29 | 29 |
<property> |
| 30 |
<name>input_document_to_pdb</name> |
|
| 31 |
<value>$UNDEFINED$</value> |
|
| 32 |
</property> |
|
| 33 |
<property> |
|
| 30 | 34 |
<name>input_document_to_document_classes</name> |
| 31 | 35 |
<value>$UNDEFINED$</value> |
| 32 | 36 |
</property> |
| ... | ... | |
| 154 | 158 |
<description>document research initiative action-set identifier of exported data</description> |
| 155 | 159 |
</property> |
| 156 | 160 |
<property> |
| 161 |
<name>action_set_id_document_pdb</name> |
|
| 162 |
<value>$UNDEFINED$</value> |
|
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<description>document protein databank action-set identifier of exported data</description> |
|
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</property> |
|
| 165 |
<property> |
|
| 157 | 166 |
<name>action_set_id_entity_wos</name> |
| 158 | 167 |
<value>$UNDEFINED$</value> |
| 159 | 168 |
<description>action-set identifier of exported data containing wos entities</description> |
| ... | ... | |
| 178 | 187 |
<value>$UNDEFINED$</value> |
| 179 | 188 |
<description>documents similarity threshold value below which similarity export is omitted</description> |
| 180 | 189 |
</property> |
| 190 |
<property> |
|
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<name>referenceextraction_pdb_url_root</name> |
|
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<value>$UNDEFINED$</value> |
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<description>protein databank URL root part to be concatenated with pdb identifier when forming final URL</description> |
|
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</property> |
|
| 181 | 195 |
</parameters> |
| 182 | 196 |
|
| 183 | 197 |
<global> |
| ... | ... | |
| 223 | 237 |
<value>${input_document_to_research_initiatives}</value>
|
| 224 | 238 |
</property> |
| 225 | 239 |
<property> |
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<name>input_document_to_pdb</name> |
|
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<value>${input_document_to_pdb}</value>
|
|
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</property> |
|
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<property> |
|
| 226 | 244 |
<name>input_document_to_document_classes</name> |
| 227 | 245 |
<value>${input_document_to_document_classes}</value>
|
| 228 | 246 |
</property> |
| ... | ... | |
| 316 | 334 |
<value>${action_set_id_document_research_initiative}</value>
|
| 317 | 335 |
</property> |
| 318 | 336 |
<property> |
| 337 |
<name>action_set_id_document_pdb</name> |
|
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<value>${action_set_id_document_pdb}</value>
|
|
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</property> |
|
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<property> |
|
| 319 | 341 |
<name>action_hbase_remote_zookeeper_quorum</name> |
| 320 | 342 |
<value>${action_hbase_remote_zookeeper_quorum}</value>
|
| 321 | 343 |
</property> |
| ... | ... | |
| 327 | 349 |
<name>documentssimilarity_threshold</name> |
| 328 | 350 |
<value>${documentssimilarity_threshold}</value>
|
| 329 | 351 |
</property> |
| 352 |
<property> |
|
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<name>referenceextraction_pdb_url_root</name> |
|
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<value>${referenceextraction_pdb_url_root}</value>
|
|
| 355 |
</property> |
|
| 330 | 356 |
</configuration> |
| 331 | 357 |
</sub-workflow> |
| 332 | 358 |
<ok to="export_entities_forking"/> |
Also available in: Unified diff
#1260 enabling document to protein databank reference extraction in primary workflow, supporting 3 new parameters: active_referenceextraction_pdb, export_action_set_id_document_pdb, export_referenceextraction_pdb_url_root