D-Net

ALTER TABLE datasources ADD COLUMN issn character varying(20);

ALTER TABLE datasources ADD COLUMN eissn character varying(20);

ALTER TABLE datasources ADD COLUMN lissn character varying(20);

ALTER TABLE datasources ALTER COLUMN databaseaccesstype TYPE VARCHAR(32);

ALTER TABLE datasources ALTER COLUMN datauploadtype TYPE VARCHAR(32);

ALTER TABLE datasources ALTER COLUMN databaseaccessrestriction TYPE VARCHAR(32);

ALTER TABLE datasources ALTER COLUMN datauploadrestriction TYPE VARCHAR(32);

ALTER TABLE datasources ALTER COLUMN qualitymanagementkind TYPE VARCHAR(32);

ALTER TABLE datasources ADD COLUMN registeredby character varying(255);

DELETE FROM apicollections WHERE api NOT LIKE 'api_________::%';

DELETE FROM api WHERE id NOT LIKE 'api_________::%';

ALTER TABLE apicollections DROP COLUMN name;

ALTER TABLE apicollections RENAME COLUMN accessparam TO param;

ALTER TABLE apicollections RENAME COLUMN accessvalue TO original;

ALTER TABLE apicollections ADD COLUMN edited VARCHAR(255) DEFAULT NULL;

ALTER TABLE apicollections ADD COLUMN accessparam boolean DEFAULT true;

ALTER TABLE apicollections DROP CONSTRAINT apicollection_pkey;

UPDATE apicollections SET param = 'set' WHERE param = 'SET';

UPDATE apicollections SET param = 'format' WHERE param = 'FORMAT';

UPDATE apicollections SET param = 'baseUrl' WHERE param = 'BASEURL';

-- FIX A PROBLEM WITH MULTIPLE SET

DELETE FROM apicollections WHERE api='api_________::opendoar____::1560::1' AND param='set';

INSERT INTO apicollections (param, original, api) VALUES ('set', 'hdl_10251_3829, hdl_10251_321, hdl_10251_11256, hdl_10251_11206, hdl_10251_8702, hdl_10251_3026, hdl_10251_11076', 'api_________::opendoar____::1560::1'); 

DELETE FROM apicollections WHERE api='api_________::driver______::d0b68287-678d-4efc-b354-c47cbacaed3c::0' AND param='set';

INSERT INTO apicollections (param, original, api) VALUES ('set', 'pub-type:article, pub-type:conf-proceeding, pub-type:lecture, pub-type:paper, pub-type:report', 'api_________::driver______::d0b68287-678d-4efc-b354-c47cbacaed3c::0'); 

DELETE FROM apicollections WHERE api='api_________::driver______::79476713-c428-4f23-bf97-8f27500f754a::0' AND param='set';

INSERT INTO apicollections (param, original, api) VALUES ('set', 'dad:SIQG, jhs,sal:CNF+PA', 'api_________::driver______::79476713-c428-4f23-bf97-8f27500f754a::0'); 

DELETE FROM apicollections WHERE api='api_________::opendoar____::202::0' AND param='set';

INSERT INTO apicollections (param, original, api) VALUES ('set', 'hdl_1887_4540, hdl_1887_4951', 'api_________::opendoar____::202::0'); 

DELETE FROM apicollections WHERE api='api_________::driver______::c75b9f23-25a8-4e45-aadd-ba449211e2a8::0' AND param='set';

INSERT INTO apicollections (param, original, api) VALUES ('set', 'ijdc:ART, ijdc:PAP', 'api_________::driver______::c75b9f23-25a8-4e45-aadd-ba449211e2a8::0'); 

-- AND FIX

ALTER TABLE apicollections ADD CONSTRAINT apicollection_pkey PRIMARY KEY (api, param);

INSERT INTO apicollections (param, original, edited, api) SELECT 'baseUrl', COALESCE(original,''), COALESCE(edited, ''), id  FROM api WHERE originalprotocolclass = editedprotocolclass; 

INSERT INTO apicollections (param, original, api) SELECT 'baseUrl', COALESCE(original,''), id  FROM api WHERE originalprotocolclass != editedprotocolclass OR editedprotocolclass IS NULL; 

UPDATE apicollections SET edited = NULL WHERE edited = '';

UPDATE datasources SET datasourceclass = 'websource' where id = 'openaire____::webcrawl';

INSERT INTO apicollections (param, original, api) VALUES ('splitOnElement', 'repository', 'api_________::opendoar::0');

INSERT INTO apicollections (param, original, api) VALUES ('splitOnElement', 'ROW', 'api_________::re3data::0');

INSERT INTO apicollections (param, original, api) VALUES ('splitOnElement', 'Record', 'api_________::wellcometrust::0');

INSERT INTO apicollections (param, original, api) VALUES ('splitOnElement', 'ROW', 'api_________::corda::0');

UPDATE apicollections SET _dnet_resource_identifier_ = api||'@@'||param;

INSERT INTO scheme (_dnet_resource_identifier_, code, name) VALUES ('dnet:content_description_typologies', 'dnet:content_description_typologies', 'D-Net Content Description Typologies');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('UNKNOWN', 'UNKNOWN', 'UNKNOWN'); 

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('native', 'native', 'native');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('native@@dnet:compatibilityLevel', 'native', 'dnet:compatibilityLevel');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('openaire_basic', 'openaire_basic', 'OpenAIRE (basic)');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('openaire_basic@@dnet:compatibilityLevel', 'openaire_basic', 'dnet:compatibilityLevel');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('files', 'files', 'files');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('files@@dnet:compatibilityLevel', 'files', 'dnet:compatibilityLevel');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('metadata', 'metadata', 'metadata');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('file::WoS', 'file::WoS', 'file::WoS');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('file::PDF', 'file::PDF', 'file::PDF');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('file::EuropePMC', 'file::EuropePMC', 'file::EuropePMC');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('metadata@@dnet:content_description_typologies', 'metadata', 'dnet:content_description_typologies');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('file::WoS@@dnet:content_description_typologies', 'file::WoS', 'dnet:content_description_typologies');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('file::PDF@@dnet:content_description_typologies', 'file::PDF', 'dnet:content_description_typologies');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('file::EuropePMC@@dnet:content_description_typologies', 'file::EuropePMC', 'dnet:content_description_typologies');

ALTER TABLE api ADD COLUMN contentdescriptionclass VARCHAR(255) DEFAULT 'metadata';

ALTER TABLE api ADD COLUMN contentdescriptionscheme VARCHAR(255) DEFAULT 'dnet:content_description_typologies';

ALTER TABLE api DROP COLUMN editedprotocolclass;

ALTER TABLE api DROP COLUMN editedprotocolscheme;

ALTER TABLE api DROP COLUMN original;

ALTER TABLE api DROP COLUMN edited;

ALTER TABLE api DROP COLUMN useedited;

ALTER TABLE api RENAME COLUMN originalprotocolclass TO protocolclass;

ALTER TABLE api RENAME COLUMN  originalprotocolscheme TO protocolscheme;

ALTER TABLE api ADD COLUMN  active BOOLEAN DEFAULT false;

ALTER TABLE api ADD COLUMN  removable BOOLEAN DEFAULT false;

ALTER TABLE api ADD COLUMN typologyclass VARCHAR(255) DEFAULT 'UNKNOWN';

ALTER TABLE api ADD COLUMN typologyscheme VARCHAR(255) DEFAULT 'dnet:datasource_typologies';

ALTER TABLE api ADD CONSTRAINT api_typologyclass_fkey FOREIGN KEY (typologyclass) REFERENCES class(code);

ALTER TABLE api ADD CONSTRAINT api_typologyscheme_fkey FOREIGN KEY (typologyscheme) REFERENCES scheme(code);

ALTER TABLE api ADD COLUMN compatibilityclass VARCHAR(255) DEFAULT 'UNKNOWN';

ALTER TABLE api ADD COLUMN compatibilityscheme VARCHAR(255) DEFAULT 'dnet:compatibilityLevel';

ALTER TABLE api ADD CONSTRAINT api_compatibilityclass_fkey FOREIGN KEY (compatibilityclass) REFERENCES class(code);

ALTER TABLE api ADD CONSTRAINT api_compatibilityscheme_fkey FOREIGN KEY (compatibilityscheme) REFERENCES scheme(code);

ALTER TABLE api ADD CONSTRAINT api_contentdescriptionclass_fkey FOREIGN KEY (contentdescriptionclass) REFERENCES class(code);

ALTER TABLE api ADD CONSTRAINT api_contentdescriptionscheme_fkey FOREIGN KEY (contentdescriptionscheme) REFERENCES scheme(code);

UPDATE api SET typologyclass = d.datasourceclass FROM datasources d WHERE datasource = d.id;

UPDATE api SET compatibilityclass = 'openaire_basic' WHERE typology = 'driver';

UPDATE api SET compatibilityclass = 'openaire2.0' FROM apicollections ac WHERE typology = 'openaire' AND id = ac.api AND ac.param = 'set' AND ac.original like '%ec_fundedresources%';

UPDATE api SET compatibilityclass = 'openaire3.0' FROM apicollections ac WHERE typology = 'openaire' AND id = ac.api AND ac.param = 'set' AND ac.original like '%openaire%';

UPDATE api SET (typologyclass, compatibilityclass) = ('entityregistry', 'native') WHERE id = 'api_________::opendoar::0';

UPDATE api SET (typologyclass, compatibilityclass) = ('entityregistry', 'native') WHERE id = 'api_________::re3data::0';

UPDATE api SET (typologyclass, compatibilityclass) = ('entityregistry', 'native') WHERE id = 'api_________::wellcometrust::0';

UPDATE api SET (typologyclass, compatibilityclass) = ('entityregistry', 'native') WHERE id = 'api_________::corda::0';

ALTER TABLE api DROP COLUMN typology;

ALTER TABLE datasources DROP COLUMN openairecompatibilityclass;

ALTER TABLE datasources DROP COLUMN openairecompatibilityscheme;

DELETE FROM class_scheme WHERE scheme = 'dnet:compatibilityLevel' AND class = 'driver-openaire2.0';

DELETE FROM class_scheme WHERE scheme = 'dnet:compatibilityLevel' AND class = 'driver-openaire2.0-openaire3.0';

DELETE FROM class_scheme WHERE scheme = 'dnet:compatibilityLevel' AND class = 'driver-openaire3.0';

DELETE FROM class_scheme WHERE scheme = 'dnet:compatibilityLevel' AND class = 'openaire2.0-openaire3.0';

DELETE FROM class_scheme WHERE scheme = 'dnet:compatibilityLevel' AND class = 'driver';

DELETE FROM class WHERE code = 'driver-openaire2.0';

DELETE FROM class WHERE code = 'driver-openaire2.0-openaire3.0';

DELETE FROM class WHERE code = 'driver-openaire3.0';

DELETE FROM class WHERE code = 'openaire2.0-openaire3.0';

DELETE FROM class WHERE code = 'driver';

DELETE FROM apicollections WHERE api = 'api_________::openaire____::webcrawl::0';

DELETE FROM api WHERE id = 'api_________::openaire____::webcrawl::0';

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('fileCSV', 'fileCSV', 'fileCSV');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('fileCSV@@dnet:protocols', 'fileCSV', 'dnet:protocols');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('files_from_mdstore', 'files_from_mdstore', 'files_from_mdstore');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('files_from_mdstore@@dnet:protocols', 'files_from_mdstore', 'dnet:protocols');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('files_from_metadata', 'files_from_metadata', 'files_from_metadata');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('files_from_metadata@@dnet:protocols', 'files_from_metadata', 'dnet:protocols');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('files_by_rpc', 'files_by_rpc', 'files_by_rpc');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('files_by_rpc@@dnet:protocols', 'files_by_rpc', 'dnet:protocols');

INSERT INTO class (_dnet_resource_identifier_, code, name) VALUES ('filesystem', 'filesystem', 'filesystem');

INSERT INTO class_scheme (_dnet_resource_identifier_, class, scheme) VALUES ('filesystem@@dnet:protocols', 'filesystem', 'dnet:protocols');

INSERT INTO api (_dnet_resource_identifier_, id, protocolclass, datasource, typologyclass, compatibilityclass) VALUES ('api_________::openaire____::webcrawl::csv', 'api_________::openaire____::webcrawl::csv', 'fileCSV', 'openaire____::webcrawl', 'websource', 'native');

INSERT INTO api (_dnet_resource_identifier_, id, protocolclass, datasource, typologyclass, compatibilityclass, contentdescriptionclass) VALUES ('api_________::openaire____::webcrawl::files', 'api_________::openaire____::webcrawl::files', 'files_from_mdstore', 'openaire____::webcrawl', 'websource', 'files', 'file::WoS');

INSERT INTO api (_dnet_resource_identifier_, id, protocolclass, datasource, typologyclass, compatibilityclass, contentdescriptionclass) VALUES ('api_________::opendoar____::18::files', 'api_________::opendoar____::18::files', 'files_from_metadata', 'opendoar____::18', 'pubsrepository::unknown', 'files', 'file::PDF');

INSERT INTO api (_dnet_resource_identifier_, id, protocolclass, datasource, typologyclass, compatibilityclass, contentdescriptionclass) VALUES ('api_________::opendoar____::908::files', 'api_________::opendoar____::908::files', 'files_from_metadata', 'opendoar____::908', 'pubsrepository::unknown', 'files', 'file::PDF');

INSERT INTO api (_dnet_resource_identifier_, id, protocolclass, datasource, typologyclass, compatibilityclass, contentdescriptionclass) VALUES ('api_________::opendoar____::2367::files', 'api_________::opendoar____::2367::files', 'files_from_metadata', 'opendoar____::2367', 'pubsrepository::unknown', 'files', 'file::PDF');

INSERT INTO api (_dnet_resource_identifier_, id, protocolclass, datasource, typologyclass, compatibilityclass, contentdescriptionclass) VALUES ('api_________::opendoar____::165::files', 'api_________::opendoar____::165::files', 'files_from_metadata', 'opendoar____::165', 'pubsrepository::unknown', 'files', 'file::PDF');

INSERT INTO api (_dnet_resource_identifier_, id, protocolclass, datasource, typologyclass, compatibilityclass, contentdescriptionclass) VALUES ('api_________::infrastruct_::openaire::jdbc', 'api_________::infrastruct_::openaire::jdbc', 'jdbc', 'infrastruct_::openaire', 'scholarcomminfra', 'openaire2.0', 'metadata');

INSERT INTO apicollections (param, original, api) VALUES ('baseUrl', 'jdbc:postgresql://localhost:5432', 'api_________::infrastruct_::openaire::jdbc');

INSERT INTO apicollections (param, original, api) VALUES ('dbName', 'dnet_openaireplus', 'api_________::infrastruct_::openaire::jdbc');

INSERT INTO apicollections (param, original, api) VALUES ('sql', 'SELECT regexp_replace(xml, ''&(?!amp;)'', ''&'', ''g'') as xml FROM claims WHERE type = ''dmf2actions'' and set = ''userclaim_dmf''', 'api_________::infrastruct_::openaire::jdbc');

INSERT INTO apicollections (param, original, api) VALUES ('format', 'OAF', 'api_________::infrastruct_::openaire::jdbc');

INSERT INTO apicollections (param, original, api) VALUES ('baseUrl', 'file:///var/lib/dnet/wos/metadata.tsv', 'api_________::openaire____::webcrawl::csv');

INSERT INTO apicollections (param, original, api) VALUES ('separator', E'\\t', 'api_________::openaire____::webcrawl::csv');

INSERT INTO apicollections (param, original, api) VALUES ('identifier', '56', 'api_________::openaire____::webcrawl::csv');

INSERT INTO apicollections (param, original, api) VALUES ('header', 'true', 'api_________::openaire____::webcrawl::csv');

INSERT INTO apicollections (param, original, api) VALUES ('baseUrl', '', 'api_________::openaire____::webcrawl::files');

INSERT INTO apicollections (param, original, api) VALUES ('mdstoreId', '', 'api_________::openaire____::webcrawl::files');

INSERT INTO apicollections (param, original, api) VALUES ('xpath', '//column[./@isID=''true'']', 'api_________::openaire____::webcrawl::files');

INSERT INTO apicollections (param, original, api) VALUES ('baseUrl', '', 'api_________::opendoar____::18::files');

INSERT INTO apicollections (param, original, api) VALUES ('mdstoreId', '', 'api_________::opendoar____::18::files');

INSERT INTO apicollections (param, original, api) VALUES ('xpath', '//dc:identifier', 'api_________::opendoar____::18::files');

INSERT INTO apicollections (param, original, api) VALUES ('baseUrl', '', 'api_________::opendoar____::908::files');

INSERT INTO apicollections (param, original, api) VALUES ('mdstoreId', '', 'api_________::opendoar____::908::files');

INSERT INTO apicollections (param, original, api) VALUES ('xpath', '//dc:identifier', 'api_________::opendoar____::908::files');

INSERT INTO apicollections (param, original, api) VALUES ('baseUrl', '', 'api_________::opendoar____::2367::files');

INSERT INTO apicollections (param, original, api) VALUES ('mdstoreId', '', 'api_________::opendoar____::2367::files');

INSERT INTO apicollections (param, original, api) VALUES ('xpath', '//dc:identifier', 'api_________::opendoar____::2367::files');

INSERT INTO apicollections (param, original, api) VALUES ('baseUrl', '', 'api_________::opendoar____::165::files');

INSERT INTO apicollections (param, original, api) VALUES ('mdstoreId', '', 'api_________::opendoar____::165::files');

INSERT INTO apicollections (param, original, api) VALUES ('xpath', '//dc:identifier', 'api_________::opendoar____::165::files');

INSERT INTO apicollections (param, original, api, accessparam) VALUES ('metadata_identifier_path', '//repository/@rID', 'api_________::opendoar::0', false);

INSERT INTO apicollections (param, original, api, accessparam) VALUES ('metadata_identifier_path', '//*[local-name()=''repository'']/*[local-name()=''identifier'']', 'api_________::re3data::0', false);

INSERT INTO apicollections (param, original, api, accessparam) VALUES ('metadata_identifier_path', '//Position', 'api_________::wellcometrust::0', false);

INSERT INTO apicollections (param, original, api, accessparam) VALUES ('metadata_identifier_path', '//ProjectId', 'api_________::corda::0', false);

DELETE FROM apicollections  WHERE param = 'splitOnElement' and api = 'api_________::corda::0';

INSERT INTO apicollections (param, original, api) VALUES ('filter', '*.xml', 'api_________::corda::0');

INSERT INTO apicollections (param, original, api) VALUES ('username', '***', 'api_________::corda::0');

INSERT INTO apicollections (param, original, api) VALUES ('password', '***', 'api_________::corda::0');

INSERT INTO apicollections (param, original, api) VALUES ('recursive', 'false', 'api_________::corda::0');

UPDATE apicollections SET original =  'ftp://fts.ec.europa.eu' WHERE api = 'api_________::corda::0' AND param = 'baseUrl';

UPDATE api SET protocolclass = 'ftp' WHERE id = 'api_________::corda::0';

UPDATE api SET protocolclass = 'filesystem' WHERE id='api_________::re3data::0';

UPDATE apicollections SET original = '/var/lib/dnet/re3data' WHERE api='api_________::re3data::0' AND param='baseUrl';

UPDATE api SET  compatibilityclass = 'native' WHERE id  = 'api_________::datacite::0' ;

-- metadata_identifier_path for Datacite and WoS

INSERT INTO apicollections (param, original, api, accessparam) VALUES ('metadata_identifier_path', '//*[local-name()=''header'']/*[local-name()=''identifier'']', 'api_________::datacite::0', false);

INSERT INTO apicollections (param, original, api, accessparam) VALUES ('metadata_identifier_path', '//*[local-name()=''column'' and @isID=''true'']', 'api_________::openaire____::webcrawl::csv', false);

UPDATE apicollections SET _dnet_resource_identifier_ = api||'@@'||param;