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package gr.uoa.di.validator.api;
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import gr.uoa.di.validator.Validator;
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import gr.uoa.di.validator.api.listeners.OpenAIREValidatorCompatibilityTestListener;
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import gr.uoa.di.validator.api.listeners.OpenAIREValidatorRegistrationListener;
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import gr.uoa.di.validator.constants.FieldNames;
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import gr.uoa.di.validator.constants.FieldsAndDetails;
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import gr.uoa.di.validator.constants.JobTypes;
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import gr.uoa.di.validator.constants.RuleTypes;
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import gr.uoa.di.validator.constants.TableNames;
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import gr.uoa.di.validator.constants.fielddetails.FieldDetails;
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import gr.uoa.di.validator.dao.Entry;
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import gr.uoa.di.validator.dao.JobSubmitted;
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import gr.uoa.di.validator.dao.JobSubmittedDAO;
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import gr.uoa.di.validator.dao.RulePair;
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import gr.uoa.di.validator.dao.RuleSet;
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import gr.uoa.di.validator.dao.RuleSetDAO;
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import gr.uoa.di.validator.dao.RuleStored;
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import gr.uoa.di.validator.dao.RuleStoredDAO;
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import gr.uoa.di.validator.dao.TaskStoredDAO;
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import gr.uoa.di.validator.dao.Utilities;
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import gr.uoa.di.validator.data.Rule;
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import gr.uoa.di.validator.execution.Job;
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import gr.uoa.di.validator.impls.MemoryThreadValidator;
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import gr.uoa.di.validator.impls.listeners.DnetListener;
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import gr.uoa.di.validator.impls.listeners.ValidatorJobListener;
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import gr.uoa.di.validator.impls.providers.OAIPMHRecordProvider;
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import gr.uoa.di.validator.impls.providers.OAIPMHSinglePageVerbProvider;
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import gr.uoa.di.validator.impls.rules.ChainRule;
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import gr.uoa.di.validatorweb.actions.admin.rules.FieldPair;
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import gr.uoa.di.validatorweb.actions.admin.rulesets.RuleS;
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import gr.uoa.di.validatorweb.actions.compTest.RuleD;
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import gr.uoa.di.validatorweb.email.Emailer;
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import java.io.BufferedReader;
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import java.io.Serializable;
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import java.io.StringReader;
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import java.lang.reflect.InvocationTargetException;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Properties;
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import java.util.Set;
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import org.apache.log4j.Logger;
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import org.springframework.transaction.annotation.Propagation;
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import org.springframework.transaction.annotation.Transactional;
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/**
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*
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* @author Nikon Gasparis
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*
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*/
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@Transactional(propagation = Propagation.REQUIRED)
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public abstract class OpenAIREValidatorImpl implements OpenAIREValidator {
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private Validator validator;
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private JobSubmittedDAO jobSubmittedDao;
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private RuleSetDAO ruleSetDao;
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private RuleStoredDAO ruleStoredDao;
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private TaskStoredDAO taskStoredDao;
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private ValidatorRestore valRestore;
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private Emailer emailer = null;
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private String valBaseUrl = null;
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private Map<Integer,Integer> ruleLinkingMap = new HashMap<Integer,Integer>();
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private Integer jobIdRegistry=1;
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private Integer ruleIdRegistry=1;
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private List<String> repoRegistrationOverride = new ArrayList<String>();
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private static Logger logger = Logger.getLogger(OpenAIREValidatorImpl.class);
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protected abstract ValidatorJobListener createListener();
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protected abstract OpenAIREValidatorCompatibilityTestListener createCompTestListener();
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protected abstract OpenAIREValidatorRegistrationListener createRegListener();
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protected abstract DnetListener createDnetListener();
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public void start(){
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logger.debug("deleting uncompleted jobs..");
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List<JobSubmitted> jobs = valRestore.deleteUncompleted();
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logger.debug("restoring OpenAire Validator..");
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valRestore.restore(jobs);
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logger.debug("finished restoring OpenAire Validator..");
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}
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@Override
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public void createRuleSet(String name, String description,String guidelinesAcronym, String visibility, String[] ruleIdsContent,String[] ruleIdsUsage) throws OpenAIREValidatorException {
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try {
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logger.debug("creating rule set " + name);
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RuleSet newRuleSet = new RuleSet();
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newRuleSet.setRuleIdsContent(Utilities.convertArrayToList(ruleIdsContent));
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newRuleSet.setRuleIdsUsage(Utilities.convertArrayToList(ruleIdsUsage));
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logger.debug("creating rule set : content : " + newRuleSet.getRuleIdsContent());
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logger.debug("creating rule set : usage : " + newRuleSet.getRuleIdsUsage());
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newRuleSet.setName(name);
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newRuleSet.setDescription(description);
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newRuleSet.setGuidelinesAcronym(guidelinesAcronym);
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newRuleSet.setVisibility(Utilities.convertStringToList(visibility));
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newRuleSet.setId(-1);
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ruleSetDao.save(newRuleSet);
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} catch (Exception e) {
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logger.error("Error creating rule set " + name, e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public void editRuleSet(int setId, String name, String description,String guidelinesAcronym, String visibility, String[] ruleIdsContent, String[] ruleIdsUsage) throws OpenAIREValidatorException {
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try {
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logger.debug("editing rule set " + setId);
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RuleSet newRuleSet = new RuleSet();
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newRuleSet.setRuleIdsContent(Utilities.convertArrayToList(ruleIdsContent));
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newRuleSet.setRuleIdsUsage(Utilities.convertArrayToList(ruleIdsUsage));
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newRuleSet.setName(name);
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newRuleSet.setDescription(description);
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newRuleSet.setGuidelinesAcronym(guidelinesAcronym);
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newRuleSet.setVisibility(Utilities.convertStringToList(visibility));
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newRuleSet.setId(setId);
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ruleSetDao.save(newRuleSet);
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} catch (Exception e) {
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logger.error("Error editing rule set " + setId, e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public void deleteRuleSet(int setId) throws OpenAIREValidatorException {
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try {
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logger.debug("deleting rule set " + setId);
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ruleSetDao.delete(Integer.toString(setId));
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} catch (Exception e) {
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logger.error("Error deleting rule set " + setId, e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public String getRuleSetName(int setId) throws OpenAIREValidatorException {
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try {
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logger.debug("getting rule set names for rule set " + setId);
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return ruleSetDao.getRuleSetName(Integer.toString(setId));
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} catch (Exception e) {
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logger.error("Error getting rule set names for rule set " + setId, e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public RuleSet getRuleSet(int setId) throws OpenAIREValidatorException {
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try {
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logger.debug("getting rule set names for rule set " + setId);
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return ruleSetDao.get(Integer.toString(setId));
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} catch (Exception e) {
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logger.error("Error getting rule set names for rule set " + setId, e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public List<RuleSet> getRuleSetIdNames() throws OpenAIREValidatorException {
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try {
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logger.debug("Getting all rule sets");
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return ruleSetDao.getRuleSetIdNames();
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} catch (Exception e) {
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logger.error("Error getting all rule sets", e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public List<String> getRuleSetRuleIdsByJobType(int setId, String jobType) throws OpenAIREValidatorException {
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try {
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logger.debug("getting rule set rule ids for rule set " + setId);
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return ruleSetDao.getRuleSetRuleIdsByJobType(Integer.toString(setId), jobType);
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} catch (Exception e) {
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logger.error("Error getting rule set rule ids for rule set " + setId, e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public List<RuleD> convertRuleIdsListToRuleDList(List<String> ruleIds) {
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List<RuleD> ruleDList = new ArrayList<RuleD>();
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for(String ruleId : ruleIds) {
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RuleStored rule = ruleStoredDao.get(ruleId);
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RuleD ruleD = new RuleD();
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ruleD.setName(rule.getName());
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ruleD.setDescription(rule.getDescription());
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if (rule.getJob_type().equals("content"))
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ruleD.setJobType("OAI Content Validation");
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else
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ruleD.setJobType("OAI Usage Validation");
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ruleDList.add(ruleD);
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}
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return ruleDList;
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}
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@Override
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public List<RuleS> getAllRulesForPresentationByJobType(String jobType) throws OpenAIREValidatorException {
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try {
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logger.debug("getting all rules for front-end presentation");
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List<RuleS> rules = new ArrayList<RuleS>();
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List<RuleStored> rulesTemp = getAllRulesByJobType(jobType);
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for (RuleStored rule : rulesTemp)
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{
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RuleS ruleS= new RuleS();
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ruleS.setName(rule.getName());
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ruleS.setId(rule.getId());
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ruleS.setChosen(false);
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rules.add(ruleS);
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}
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return rules;
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} catch (Exception e) {
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logger.error("Error getting all rules for front-end presentation", e);
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throw new OpenAIREValidatorException(e);
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}
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}
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@Override
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public List<RuleS> getAllRulesForPresentationByJobTypeByRuleSet(List<String> ruleSetRuleIds, String jobType) throws OpenAIREValidatorException {
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try {
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logger.debug("getting all rules for front-end presentation sorted by ruleset");
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List<RuleS> rules = new ArrayList<RuleS>();
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List<RuleStored> rulesTemp = getAllRulesByJobType(jobType);
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for (RuleStored rule : rulesTemp)
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{
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RuleS ruleS= new RuleS();
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ruleS.setName(rule.getName());
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ruleS.setId(rule.getId());
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if(ruleSetRuleIds.contains(ruleS.getId()))
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ruleS.setChosen(true);
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else
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ruleS.setChosen(false);
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rules.add(ruleS);
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}
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return rules;
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} catch (Exception e) {
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251
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logger.error("Error getting all rules for presentation by rule set", e);
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252
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throw new OpenAIREValidatorException(e);
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253
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}
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254
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}
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255
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256
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@Override
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257
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public List<RuleD> getRulesForJobValidationByJobType (String jobType) throws OpenAIREValidatorException {
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258
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try {
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259
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logger.debug("getting all rules for front-end validation presentation");
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260
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List<RuleD> rules = new ArrayList<RuleD>();
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261
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List<RuleStored> rulesTemp = getAllRulesByJobType(jobType);
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262
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for (RuleStored rule : rulesTemp)
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263
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{
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264
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// logger.debug("rule id: "+ rule.getId());
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265
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RuleD ruleD= new RuleD();
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266
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ruleD.setName(rule.getName());
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ruleD.setId(Integer.parseInt(rule.getId()));
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268
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ruleD.setJobType(rule.getJob_type());
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269
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ruleD.setDescription(rule.getDescription());
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270
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271
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rules.add(ruleD);
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272
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}
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273
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return rules;
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274
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} catch (Exception e) {
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275
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logger.error("Error getting all rules for front-end validation presentation", e);
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276
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throw new OpenAIREValidatorException(e);
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277
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}
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278
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}
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279
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280
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@Override
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281
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public List<RuleD> getRulesForJobValidationByJobTypeByRuleSet (int setId, String jobType) throws OpenAIREValidatorException {
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282
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try {
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283
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logger.debug("getting all rules for front-end validation by ruleset:"+setId);
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284
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List<RuleD> rules = new ArrayList<RuleD>();
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285
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List<String> ruleSetRuleIds = this.getRuleSetRuleIdsByJobType(setId, jobType);
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286
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List<RuleStored> rulesTemp = getAllRulesByJobType(jobType);
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287
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for (RuleStored rule : rulesTemp)
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288
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{
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289
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// logger.debug("rule id: "+ rule.getId());
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290
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if(!ruleSetRuleIds.contains(rule.getId()))
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291
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continue;
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292
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RuleD ruleD= new RuleD();
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293
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ruleD.setName(rule.getName());
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294
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ruleD.setId(Integer.parseInt(rule.getId()));
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295
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ruleD.setJobType(rule.getJob_type());
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296
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ruleD.setDescription(rule.getDescription());
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297
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298
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rules.add(ruleD);
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299
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}
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300
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return rules;
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|
301
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} catch (Exception e) {
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302
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logger.error("Error getting all rules for front-end validation by ruleset", e);
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303
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throw new OpenAIREValidatorException(e);
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|
304
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}
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|
305
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}
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|
306
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|
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307
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@Override
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|
308
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public List<RuleStored> getAllRulesByJobType(String jobType) throws OpenAIREValidatorException {
|
|
309
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try {
|
|
310
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logger.debug("getting all rules for a specific jobType");
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311
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return ruleStoredDao.getAllRulesByJobType(jobType);
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|
312
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} catch (Exception e) {
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313
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logger.error("Error getting all rules for a specific jobType", e);
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314
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throw new OpenAIREValidatorException(e);
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|
315
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}
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|
316
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}
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|
317
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|
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318
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@Override
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319
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public List<RulePair> getAllRulesToRulePair() throws OpenAIREValidatorException {
|
|
320
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try {
|
|
321
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logger.debug("getting all rules to rule pair");
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322
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return ruleStoredDao.getAllRulesToRulePair();
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323
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} catch (Exception e) {
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324
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logger.error("Error getting all rules to rule pair", e);
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325
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throw new OpenAIREValidatorException(e);
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326
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}
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|
327
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}
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328
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329
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public void storeJobForRegistration(String baseUrl, String officialName,
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330
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String activationId, String user, List<String> adminEmails, String validationSet, String desiredCompatibility, String datasourceId, String interfaceId) throws OpenAIREValidatorException {
|
|
331
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try {
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332
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logger.debug("storing fields for job registration");
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333
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jobSubmittedDao.storeJobForRegistration(baseUrl,officialName,activationId, user, adminEmails.get(0), validationSet, desiredCompatibility, datasourceId, interfaceId);
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334
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} catch (Exception e) {
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335
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logger.error("Error storing fields for job registration", e);
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336
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throw new OpenAIREValidatorException(e);
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|
337
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}
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|
338
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}
|
|
339
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|
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340
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public List<String> getJobForRegistration(String activationId) throws OpenAIREValidatorException {
|
|
341
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try {
|
|
342
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logger.debug("getting fields for job registration");
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343
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return jobSubmittedDao.getJobForRegistration(activationId);
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|
344
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} catch (Exception e) {
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|
345
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logger.error("Error getting fields for job registration", e);
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|
346
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throw new OpenAIREValidatorException(e);
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|
347
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}
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|
348
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}
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|
349
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|
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350
|
public void deleteJobForRegistration(String activationId) throws OpenAIREValidatorException {
|
|
351
|
try {
|
|
352
|
logger.debug("deleting fields for job registration");
|
|
353
|
jobSubmittedDao.deleteJobForRegistration(activationId);
|
|
354
|
} catch (Exception e) {
|
|
355
|
logger.error("Error deleting fields for job registration", e);
|
|
356
|
throw new OpenAIREValidatorException(e);
|
|
357
|
}
|
|
358
|
}
|
|
359
|
|
|
360
|
public void preRegistrationValidations(String baseUrl, String officialName,
|
|
361
|
String activationId, String userMail, List<String> adminEmails,
|
|
362
|
String validationSet, String desiredCompatibility, String datasourceId, String interfaceId) throws OpenAIREValidatorException {
|
|
363
|
try {
|
|
364
|
logger.debug("initiating preregistration validations on repo " + baseUrl + " for user " + userMail + "and desired compatibility: " + desiredCompatibility);
|
|
365
|
Set<Integer> ruleIdsContent = new HashSet<Integer>();
|
|
366
|
Set<Integer> ruleIdsUsage = new HashSet<Integer>();
|
|
367
|
for (RuleSet ruleset : ruleSetDao.getRuleSetIdNames()) {
|
|
368
|
if (ruleset.getDescription().equals(desiredCompatibility)) {
|
|
369
|
ruleIdsContent = Utilities.convertListToSet(ruleset.getRuleIdsContent());
|
|
370
|
ruleIdsUsage = Utilities.convertListToSet(ruleset.getRuleIdsUsage());
|
|
371
|
}
|
|
372
|
}
|
|
373
|
|
|
374
|
|
|
375
|
OpenAIREValidatorRegistrationListener regListener = createRegListener();
|
|
376
|
regListener.setActivationId(activationId);
|
|
377
|
regListener.setAdminEmails(adminEmails);
|
|
378
|
regListener.setBaseUrl(baseUrl);
|
|
379
|
regListener.setOfficialName(officialName);
|
|
380
|
regListener.setUserMail(userMail);
|
|
381
|
regListener.setDatasourceId(datasourceId);
|
|
382
|
regListener.setInterfaceId(interfaceId);
|
|
383
|
regListener.setValidationSet(validationSet);
|
|
384
|
regListener.setDesiredCompLevel(desiredCompatibility);
|
|
385
|
|
|
386
|
Properties pros = null;
|
|
387
|
pros = new Properties();
|
|
388
|
pros.setProperty(OAIPMHRecordProvider.BASEURL, baseUrl);
|
|
389
|
pros.setProperty(OAIPMHRecordProvider.METADATA_PREFIX, "oai_dc");
|
|
390
|
pros.setProperty(OAIPMHRecordProvider.TIMEOUT, "360000");
|
|
391
|
pros.setProperty(OAIPMHRecordProvider.DELAY, "1000");
|
|
392
|
pros.setProperty(OAIPMHRecordProvider.RETRY_DELAY, "60000");
|
|
393
|
pros.setProperty(OAIPMHRecordProvider.RETRY_EFFORTS, "3");
|
|
394
|
pros.setProperty(OAIPMHRecordProvider.RECORDS, "all");
|
|
395
|
// pros.setProperty(OAIPMHRecordProvider.RECORDS, "20");
|
|
396
|
//TODO
|
|
397
|
pros.setProperty(OAIPMHRecordProvider.SET, validationSet);
|
|
398
|
pros.setProperty("ACTIVATION_ID", activationId);
|
|
399
|
|
|
400
|
this.submitContentJob(pros, ruleIdsContent, userMail, null, regListener);
|
|
401
|
|
|
402
|
pros = new Properties();
|
|
403
|
pros.setProperty(OAIPMHSinglePageVerbProvider.BASEURL, baseUrl);
|
|
404
|
pros.setProperty(OAIPMHSinglePageVerbProvider.TIMEOUT, "360000");
|
|
405
|
pros.setProperty(OAIPMHSinglePageVerbProvider.DELAY, "1000");
|
|
406
|
pros.setProperty(OAIPMHSinglePageVerbProvider.RETRY_DELAY, "60000");
|
|
407
|
pros.setProperty(OAIPMHSinglePageVerbProvider.RETRY_EFFORTS, "3");
|
|
408
|
pros.setProperty("ACTIVATION_ID", activationId);
|
|
409
|
|
|
410
|
|
|
411
|
this.submitUsageJob(pros, ruleIdsUsage, userMail, regListener);
|
|
412
|
|
|
413
|
|
|
414
|
|
|
415
|
|
|
416
|
|
|
417
|
} catch (Exception e) {
|
|
418
|
logger.error("Error running preregistration validations", e);
|
|
419
|
throw new OpenAIREValidatorException(e);
|
|
420
|
}
|
|
421
|
|
|
422
|
|
|
423
|
|
|
424
|
}
|
|
425
|
|
|
426
|
public Map<String, Set<Integer>> prepareCrisJobs(Set<Integer> chosenContentRules) throws OpenAIREValidatorException {
|
|
427
|
Map<String, Set<Integer>> entityChosenRulesMap = new HashMap<String, Set<Integer>>();
|
|
428
|
|
|
429
|
//getting rules per entity and leave only chosen ones
|
|
430
|
for (String entity : RuleTypes.getEntities().keySet()) {
|
|
431
|
Set<Integer> tempSet = new HashSet<Integer>();
|
|
432
|
for (RuleStored rule : ruleStoredDao.getAllRulesByJobTypeEntityType("content", entity)) {
|
|
433
|
if (chosenContentRules.contains(Integer.parseInt(rule.getId())))
|
|
434
|
tempSet.add(Integer.parseInt(rule.getId()));
|
|
435
|
}
|
|
436
|
entityChosenRulesMap.put(RuleTypes.getSetOfEntity(entity), tempSet);
|
|
437
|
}
|
|
438
|
|
|
439
|
return entityChosenRulesMap;
|
|
440
|
}
|
|
441
|
|
|
442
|
@Override
|
|
443
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
444
|
public JobSubmitted submitContentJob(Properties pros, Set<Integer> crules, String user, String groupBy_xpath, OpenAIREValidatorRegistrationListener regListener) throws OpenAIREValidatorException {
|
|
445
|
try {
|
|
446
|
logger.debug("Submitting content job");
|
|
447
|
|
|
448
|
JobSubmitted newJob = new JobSubmitted();
|
|
449
|
|
|
450
|
Set<Integer> rules = new HashSet<Integer>();
|
|
451
|
|
|
452
|
for (Integer ruleId : crules){
|
|
453
|
RuleStored tempRule=ruleStoredDao.get(ruleId.toString());
|
|
454
|
|
|
455
|
//special behaviour type of rule is chain
|
|
456
|
if(tempRule.getType().equals("ChainRule")) {
|
|
457
|
ChainRule<Rule> chainRule = this.handleChain(tempRule);
|
|
458
|
// logger.debug("chain rule found");
|
|
459
|
// RuleStored tempRuleChain1=ruleStoredDao.get(tempRule.getConfiguration().getProperty("rule_1"));
|
|
460
|
// RuleStored tempRuleChain2=ruleStoredDao.get(tempRule.getConfiguration().getProperty("rule_2"));
|
|
461
|
// List<Rule> rules_chain = new ArrayList<Rule>();
|
|
462
|
// rules_chain.add((Rule) this.getRuleClassInstanceByType(tempRuleChain1.getType(), tempRuleChain1.getConfiguration(), ruleIdRegistry));
|
|
463
|
// ruleIdRegistry++;
|
|
464
|
// rules_chain.add((Rule) this.getRuleClassInstanceByType(tempRuleChain2.getType(), tempRuleChain2.getConfiguration(), ruleIdRegistry));
|
|
465
|
// ruleIdRegistry++;
|
|
466
|
//
|
|
467
|
// Properties chainPros = new Properties();
|
|
468
|
// chainPros.setProperty(ChainRule.TYPE,tempRule.getConfiguration().getProperty(ChainRule.TYPE));
|
|
469
|
// ChainRule<Rule> chainRule = new ChainRule<Rule>(chainPros, ruleIdRegistry, rules_chain);
|
|
470
|
|
|
471
|
validator.addToRegistry(ruleIdRegistry,chainRule, MemoryThreadValidator.RegistryType.rules);
|
|
472
|
}
|
|
473
|
else {
|
|
474
|
validator.addToRegistry(ruleIdRegistry,this.getRuleClassInstanceByType(tempRule.getType(), tempRule.getConfiguration(), ruleIdRegistry), MemoryThreadValidator.RegistryType.rules);
|
|
475
|
}
|
|
476
|
rules.add(ruleIdRegistry);
|
|
477
|
this.linkRules(ruleIdRegistry, ruleId);
|
|
478
|
ruleIdRegistry++;
|
|
479
|
}
|
|
480
|
if (pros.getProperty(OAIPMHRecordProvider.SET).equalsIgnoreCase("openaire_data"))
|
|
481
|
pros.setProperty(OAIPMHRecordProvider.METADATA_PREFIX,"oai_datacite");
|
|
482
|
|
|
483
|
|
|
484
|
Job job = new Job(this.jobIdRegistry, 1, rules, pros);
|
|
485
|
this.jobIdRegistry++;
|
|
486
|
|
|
487
|
newJob.setUser(user);
|
|
488
|
newJob.setType("OAI Content Validation");
|
|
489
|
newJob.setStatus("working");
|
|
490
|
if (regListener != null) {
|
|
491
|
newJob.setRuleset("Registration Request");
|
|
492
|
newJob.setActivation_id(pros.getProperty("ACTIVATION_ID"));
|
|
493
|
}
|
|
494
|
else
|
|
495
|
newJob.setRuleset("Custom");
|
|
496
|
newJob.setDuration("--");
|
|
497
|
newJob.setRepo(pros.getProperty(OAIPMHRecordProvider.BASEURL));
|
|
498
|
newJob.setRules(crules);
|
|
499
|
newJob.setRecords(pros.getProperty(OAIPMHRecordProvider.RECORDS));
|
|
500
|
newJob.setSet(pros.getProperty(OAIPMHRecordProvider.SET));
|
|
501
|
newJob.setGroupBy_xpath(groupBy_xpath);
|
|
502
|
newJob.setMetadata_prefix(pros.getProperty(OAIPMHRecordProvider.METADATA_PREFIX));
|
|
503
|
newJob.setId("-1");
|
|
504
|
int jobIdStored = jobSubmittedDao.save(newJob);
|
|
505
|
|
|
506
|
ValidatorJobListener listener = createListener();
|
|
507
|
listener.setJobSubmittedId(jobIdStored);
|
|
508
|
listener.setJobSubmittedUser(user);
|
|
509
|
listener.setRuleLinkingMap(ruleLinkingMap);
|
|
510
|
listener.setGroupBy_xpath(groupBy_xpath);
|
|
511
|
listener.setInternalJobsSum(1);
|
|
512
|
|
|
513
|
|
|
514
|
|
|
515
|
// DnetListener dnetListener = createDnetListener();
|
|
516
|
|
|
517
|
if (regListener != null) {
|
|
518
|
regListener.setJobId1(jobIdStored);
|
|
519
|
regListener.setActivationId(pros.getProperty("ACTIVATION_ID"));
|
|
520
|
validator.submitJob(job, listener, regListener);
|
|
521
|
} else {
|
|
522
|
OpenAIREValidatorCompatibilityTestListener compTestListener = createCompTestListener();
|
|
523
|
compTestListener.setValidationSet(pros.getProperty(OAIPMHRecordProvider.SET));
|
|
524
|
compTestListener.setGuidelines(pros.getProperty("guidelines"));
|
|
525
|
validator.submitJob(job, listener,compTestListener);
|
|
526
|
}
|
|
527
|
return newJob;
|
|
528
|
|
|
529
|
} catch (Exception e) {
|
|
530
|
logger.error("Error Submitting content job", e);
|
|
531
|
throw new OpenAIREValidatorException(e);
|
|
532
|
}
|
|
533
|
}
|
|
534
|
|
|
535
|
|
|
536
|
|
|
537
|
@Override
|
|
538
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
539
|
public JobSubmitted submitUsageJob(Properties pros, Set<Integer> urules, String user, OpenAIREValidatorRegistrationListener regListener) throws OpenAIREValidatorException {
|
|
540
|
try {
|
|
541
|
logger.debug("Submitting Usage job(s)");
|
|
542
|
JobSubmitted newJob = new JobSubmitted();
|
|
543
|
|
|
544
|
List<RuleStored> rulesStored = new ArrayList<RuleStored>();
|
|
545
|
for (Integer id : urules){
|
|
546
|
logger.debug("Rule with id: "+id+" added");
|
|
547
|
rulesStored.add(ruleStoredDao.get(id.toString()));
|
|
548
|
}
|
|
549
|
|
|
550
|
logger.debug("Creating map for provider information");
|
|
551
|
Map<String,Set<Integer>> verbRuleMap= new HashMap<String,Set<Integer>>();
|
|
552
|
Set<Integer> old,temp = null;
|
|
553
|
for (RuleStored ruleStored : rulesStored){
|
|
554
|
logger.debug("Checking for verb : "+ruleStored.getProvider_information());
|
|
555
|
if((old=verbRuleMap.get(ruleStored.getProvider_information())) == null){
|
|
556
|
logger.debug("Verb doesn't exist");
|
|
557
|
temp = new HashSet<Integer>();
|
|
558
|
temp.add(Integer.parseInt(ruleStored.getId()));
|
|
559
|
verbRuleMap.put(ruleStored.getProvider_information(),temp);
|
|
560
|
}else{
|
|
561
|
logger.debug("Verb exists");
|
|
562
|
old.add(Integer.parseInt(ruleStored.getId()));
|
|
563
|
}
|
|
564
|
}
|
|
565
|
|
|
566
|
Set<Integer> rules = null;
|
|
567
|
|
|
568
|
Job job = null;
|
|
569
|
newJob.setUser(user);
|
|
570
|
newJob.setType("OAI Usage Validation");
|
|
571
|
newJob.setStatus("working");
|
|
572
|
if (regListener != null) {
|
|
573
|
newJob.setRuleset("Registration Request");
|
|
574
|
newJob.setActivation_id(pros.getProperty("ACTIVATION_ID"));
|
|
575
|
}
|
|
576
|
else
|
|
577
|
newJob.setRuleset("Custom");
|
|
578
|
newJob.setDuration("--");
|
|
579
|
newJob.setRepo(pros.getProperty(OAIPMHSinglePageVerbProvider.BASEURL));
|
|
580
|
newJob.setRules(urules);
|
|
581
|
newJob.setMetadata_prefix(pros.getProperty(OAIPMHRecordProvider.METADATA_PREFIX));
|
|
582
|
// newJob.setRecords(pros.getProperty(OAIPMHRecordProvider.RECORDS));
|
|
583
|
// newJob.setSet(pros.getProperty(OAIPMHRecordProvider.SET));
|
|
584
|
newJob.setId("-1");
|
|
585
|
|
|
586
|
int jobIdStored = jobSubmittedDao.save(newJob);
|
|
587
|
|
|
588
|
|
|
589
|
ValidatorJobListener listener = createListener();
|
|
590
|
listener.setJobSubmittedId(jobIdStored);
|
|
591
|
listener.setJobSubmittedUser(user);
|
|
592
|
listener.setRuleLinkingMap(ruleLinkingMap);
|
|
593
|
|
|
594
|
// DnetListener dnetListener = createDnetListener();
|
|
595
|
|
|
596
|
|
|
597
|
|
|
598
|
|
|
599
|
listener.setInternalJobsSum(verbRuleMap.size());
|
|
600
|
for (Map.Entry<String, Set<Integer>> entry : verbRuleMap.entrySet()) {
|
|
601
|
pros.remove(OAIPMHSinglePageVerbProvider.VERB);
|
|
602
|
pros.setProperty(OAIPMHSinglePageVerbProvider.VERB,entry.getKey());
|
|
603
|
rules = new HashSet<Integer>();
|
|
604
|
for (Integer ruleId : entry.getValue()){
|
|
605
|
RuleStored tempRule=ruleStoredDao.get(Integer.toString(ruleId));
|
|
606
|
logger.debug("prepare to add rule to registry with regexp: "+tempRule.getConfiguration().getProperty("regexp")+ " and ruleIdregistry: "+ruleIdRegistry);
|
|
607
|
validator.addToRegistry(ruleIdRegistry,this.getRuleClassInstanceByType(tempRule.getType(), tempRule.getConfiguration(), ruleIdRegistry), MemoryThreadValidator.RegistryType.rules);
|
|
608
|
rules.add(ruleIdRegistry);
|
|
609
|
this.linkRules(ruleIdRegistry, ruleId);
|
|
610
|
ruleIdRegistry++;
|
|
611
|
}
|
|
612
|
|
|
613
|
job = new Job(this.jobIdRegistry, 2, rules, pros);
|
|
614
|
|
|
615
|
if (regListener != null) {
|
|
616
|
regListener.setJobId2(jobIdStored);
|
|
617
|
regListener.setActivationId(pros.getProperty("ACTIVATION_ID"));
|
|
618
|
validator.submitJob(job, listener, regListener);
|
|
619
|
} else {
|
|
620
|
OpenAIREValidatorCompatibilityTestListener compTestListener = createCompTestListener();
|
|
621
|
compTestListener.setGuidelines(pros.getProperty("guidelines"));
|
|
622
|
validator.submitJob(job, listener, compTestListener);
|
|
623
|
}
|
|
624
|
|
|
625
|
this.jobIdRegistry++;
|
|
626
|
}
|
|
627
|
return newJob;
|
|
628
|
} catch (Exception e) {
|
|
629
|
logger.error("Error Submitting usage job(s)", e);
|
|
630
|
throw new OpenAIREValidatorException(e);
|
|
631
|
}
|
|
632
|
}
|
|
633
|
|
|
634
|
@Override
|
|
635
|
public List<JobSubmitted> getJobsOfUser(String user) throws OpenAIREValidatorException {
|
|
636
|
try {
|
|
637
|
logger.debug("getting jobs of user " + user);
|
|
638
|
if (this.userOverridesRepoRegistration(user))
|
|
639
|
return jobSubmittedDao.getJobs();
|
|
640
|
else
|
|
641
|
return jobSubmittedDao.getJobsOfUser(user);
|
|
642
|
|
|
643
|
} catch (Exception e) {
|
|
644
|
logger.error("Error getting jobs of user " + user, e);
|
|
645
|
throw new OpenAIREValidatorException(e);
|
|
646
|
}
|
|
647
|
}
|
|
648
|
|
|
649
|
@Override
|
|
650
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
651
|
public String addNewRule(String type, String jobType, String entityType, String[] inputs) throws OpenAIREValidatorException{
|
|
652
|
try {
|
|
653
|
logger.debug("adding new rule using the inputs of the user");
|
|
654
|
RuleStored newRule = new RuleStored();
|
|
655
|
List<String> fields = new ArrayList<String>();
|
|
656
|
List<FieldDetails> generalFields = FieldsAndDetails.getFieldsAndDetails("Rules");
|
|
657
|
List<FieldDetails> subFields = FieldsAndDetails.getFieldsAndDetails(TableNames.getTableNameByClass(RuleTypes.getClassOfType(type)));
|
|
658
|
for (FieldDetails field : generalFields) {
|
|
659
|
if (field.isForDet() && !field.getFieldName().equals(FieldNames.RULE_TYPE) && !field.getFieldName().equals(FieldNames.RULE_JOBTYPE))
|
|
660
|
fields.add(field.getFieldName());
|
|
661
|
}
|
|
662
|
if (subFields != null) {
|
|
663
|
for (FieldDetails field : subFields) {
|
|
664
|
if (field.isForDet())
|
|
665
|
fields.add(field.getFieldName());
|
|
666
|
}
|
|
667
|
}
|
|
668
|
Properties pros = new Properties();
|
|
669
|
for (int i = 0; i < inputs.length; i++) {
|
|
670
|
if (fields.get(i).equals(FieldNames.RULE_NAME)) {
|
|
671
|
newRule.setName(inputs[i]);
|
|
672
|
}
|
|
673
|
else if (fields.get(i).equals(FieldNames.RULE_DESCRIPTION)) {
|
|
674
|
newRule.setDescription(inputs[i]);
|
|
675
|
}
|
|
676
|
else if (fields.get(i).equals(FieldNames.RULE_MANDATORY)) {
|
|
677
|
newRule.setMandatory(inputs[i]);
|
|
678
|
}
|
|
679
|
else if (fields.get(i).equals(FieldNames.RULE_WEIGHT)) {
|
|
680
|
newRule.setWeight(inputs[i]);
|
|
681
|
}
|
|
682
|
else if (fields.get(i).equals(FieldNames.RULE_PROVIDER_INFORMATION)) {
|
|
683
|
newRule.setProvider_information(inputs[i]);
|
|
684
|
}
|
|
685
|
else{
|
|
686
|
if (fields.get(i).equals(FieldNames.RULE_VOCABULARY_WORDS)) {
|
|
687
|
String words = "";
|
|
688
|
BufferedReader bf = new BufferedReader(new StringReader(inputs[i]));
|
|
689
|
String line;
|
|
690
|
while ((line = bf.readLine()) != null) {
|
|
691
|
words += ",";
|
|
692
|
words += line;
|
|
693
|
}
|
|
694
|
// words += line + "\n";
|
|
695
|
words = words.substring(1);
|
|
696
|
// words = words.substring(0, words.lastIndexOf('\n'));
|
|
697
|
pros.setProperty(fields.get(i), words);
|
|
698
|
|
|
699
|
} else if (fields.get(i).equals(FieldNames.RULE_NOTCONNFUSEDFIELDS)) {
|
|
700
|
String ncfields = "";
|
|
701
|
BufferedReader bf = new BufferedReader(new StringReader(inputs[i]));
|
|
702
|
String line;
|
|
703
|
while ((line = bf.readLine()) != null)
|
|
704
|
ncfields += line + "\n";
|
|
705
|
ncfields = ncfields.substring(0, ncfields.lastIndexOf('\n'));
|
|
706
|
pros.setProperty(fields.get(i), ncfields);
|
|
707
|
|
|
708
|
}else
|
|
709
|
pros.setProperty(fields.get(i), inputs[i]);
|
|
710
|
}
|
|
711
|
}
|
|
712
|
newRule.setId("-1");
|
|
713
|
newRule.setJob_type(JobTypes.getClassOfType(jobType));
|
|
714
|
newRule.setEntity_type(entityType);
|
|
715
|
newRule.setType(type);
|
|
716
|
newRule.setConfiguration(pros);
|
|
717
|
|
|
718
|
ruleStoredDao.save(newRule);
|
|
719
|
|
|
720
|
return null;
|
|
721
|
} catch (Exception e) {
|
|
722
|
logger.error("Error adding new rule", e);
|
|
723
|
throw new OpenAIREValidatorException(e);
|
|
724
|
}
|
|
725
|
}
|
|
726
|
|
|
727
|
@Override
|
|
728
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
729
|
public String editRule(String ruleId, String type, String jobType, String entityType, String[] inputs) throws OpenAIREValidatorException {
|
|
730
|
try {
|
|
731
|
logger.debug("edit rule using the inputs of the user");
|
|
732
|
RuleStored newRule = new RuleStored();
|
|
733
|
List<String> fields = new ArrayList<String>();
|
|
734
|
List<FieldDetails> generalFields = FieldsAndDetails.getFieldsAndDetails("Rules");
|
|
735
|
List<FieldDetails> subFields = FieldsAndDetails.getFieldsAndDetails(TableNames.getTableNameByClass(RuleTypes.getClassOfType(type)));
|
|
736
|
for (FieldDetails field : generalFields) {
|
|
737
|
if (field.isForDet() && !field.getFieldName().equals(FieldNames.RULE_TYPE) && !field.getFieldName().equals(FieldNames.RULE_JOBTYPE))
|
|
738
|
fields.add(field.getFieldName());
|
|
739
|
}
|
|
740
|
if (subFields != null) {
|
|
741
|
for (FieldDetails field : subFields) {
|
|
742
|
if (field.isForDet())
|
|
743
|
fields.add(field.getFieldName());
|
|
744
|
}
|
|
745
|
}
|
|
746
|
Properties pros = new Properties();
|
|
747
|
for (int i = 0; i < inputs.length; i++) {
|
|
748
|
if (fields.get(i).equals(FieldNames.RULE_NAME)) {
|
|
749
|
newRule.setName(inputs[i]);
|
|
750
|
}
|
|
751
|
else if (fields.get(i).equals(FieldNames.RULE_DESCRIPTION)) {
|
|
752
|
newRule.setDescription(inputs[i]);
|
|
753
|
}
|
|
754
|
else if (fields.get(i).equals(FieldNames.RULE_MANDATORY)) {
|
|
755
|
newRule.setMandatory(inputs[i]);
|
|
756
|
}
|
|
757
|
else if (fields.get(i).equals(FieldNames.RULE_WEIGHT)) {
|
|
758
|
newRule.setWeight(inputs[i]);
|
|
759
|
}
|
|
760
|
else if (fields.get(i).equals(FieldNames.RULE_PROVIDER_INFORMATION)) {
|
|
761
|
newRule.setProvider_information(inputs[i]);
|
|
762
|
}
|
|
763
|
else{
|
|
764
|
if (fields.get(i).equals(FieldNames.RULE_VOCABULARY_WORDS)) {
|
|
765
|
String words = "";
|
|
766
|
BufferedReader bf = new BufferedReader(new StringReader(inputs[i]));
|
|
767
|
String line;
|
|
768
|
while ((line = bf.readLine()) != null) {
|
|
769
|
words += ",";
|
|
770
|
words += line;
|
|
771
|
}
|
|
772
|
// words += line + "\n";
|
|
773
|
words = words.substring(1);
|
|
774
|
// words = words.substring(0, words.lastIndexOf('\n'));
|
|
775
|
pros.setProperty(fields.get(i), words);
|
|
776
|
// while ((line = bf.readLine()) != null)
|
|
777
|
// words += line + "\n";
|
|
778
|
// words = words.substring(0, words.lastIndexOf('\n'));
|
|
779
|
// pros.setProperty(fields.get(i), words);
|
|
780
|
|
|
781
|
} else if (fields.get(i).equals(FieldNames.RULE_NOTCONNFUSEDFIELDS)) {
|
|
782
|
String ncfields = "";
|
|
783
|
BufferedReader bf = new BufferedReader(new StringReader(inputs[i]));
|
|
784
|
String line;
|
|
785
|
while ((line = bf.readLine()) != null)
|
|
786
|
ncfields += line + "\n";
|
|
787
|
ncfields = ncfields.substring(0, ncfields.lastIndexOf('\n'));
|
|
788
|
pros.setProperty(fields.get(i), ncfields);
|
|
789
|
|
|
790
|
}else
|
|
791
|
pros.setProperty(fields.get(i), inputs[i]);
|
|
792
|
}
|
|
793
|
}
|
|
794
|
newRule.setId(ruleId);
|
|
795
|
newRule.setJob_type(JobTypes.getClassOfType(jobType));
|
|
796
|
newRule.setEntity_type(entityType);
|
|
797
|
newRule.setType(type);
|
|
798
|
newRule.setConfiguration(pros);
|
|
799
|
|
|
800
|
ruleStoredDao.save(newRule);
|
|
801
|
|
|
802
|
return null;
|
|
803
|
|
|
804
|
} catch (Exception e) {
|
|
805
|
logger.error("Error editing rule", e);
|
|
806
|
throw new OpenAIREValidatorException(e);
|
|
807
|
}
|
|
808
|
}
|
|
809
|
|
|
810
|
@Override
|
|
811
|
public RuleStored getRule(String ruleId) throws OpenAIREValidatorException {
|
|
812
|
try {
|
|
813
|
logger.debug("getting rule with id: "+ruleId);
|
|
814
|
return ruleStoredDao.get(ruleId);
|
|
815
|
} catch (Exception e) {
|
|
816
|
logger.error("Error getting rule ", e);
|
|
817
|
throw new OpenAIREValidatorException(e);
|
|
818
|
}
|
|
819
|
|
|
820
|
}
|
|
821
|
|
|
822
|
@Override
|
|
823
|
public List<FieldPair> getRuleValuePairs(String ruleId) throws OpenAIREValidatorException {
|
|
824
|
try {
|
|
825
|
logger.debug("getting rule value pairs");
|
|
826
|
RuleStored rule = ruleStoredDao.get(ruleId);
|
|
827
|
List<String> labels = new ArrayList<String>();
|
|
828
|
List<FieldDetails> generalFields = FieldsAndDetails.getFieldsAndDetails("Rules");
|
|
829
|
List<FieldDetails> subFields = FieldsAndDetails.getFieldsAndDetails(TableNames.getTableNameByClass(RuleTypes.getClassOfType(rule.getType())));
|
|
830
|
for (FieldDetails field : generalFields) {
|
|
831
|
if (field.isForDet() && !field.getFieldName().equals(FieldNames.RULE_TYPE) && !field.getFieldName().equals(FieldNames.RULE_JOBTYPE))
|
|
832
|
labels.add(field.getTableName() + "." + field.getFieldName());
|
|
833
|
}
|
|
834
|
if (subFields != null) {
|
|
835
|
for (FieldDetails field : subFields) {
|
|
836
|
if (field.isForDet())
|
|
837
|
labels.add(field.getTableName() + "." + field.getFieldName());
|
|
838
|
}
|
|
839
|
}
|
|
840
|
|
|
841
|
List<FieldPair> ruleValues = new ArrayList<FieldPair>();
|
|
842
|
for (String fieldName : labels) {
|
|
843
|
FieldPair pair = new FieldPair();
|
|
844
|
// String fieldValue=null;
|
|
845
|
pair.setFieldName(fieldName);
|
|
846
|
if (fieldName.split("\\.")[1].equals(FieldNames.RULE_NAME)) {
|
|
847
|
pair.setFieldValue(rule.getName());
|
|
848
|
}
|
|
849
|
else if (fieldName.split("\\.")[1].equals(FieldNames.RULE_DESCRIPTION)) {
|
|
850
|
pair.setFieldValue(rule.getDescription());
|
|
851
|
}
|
|
852
|
else if (fieldName.split("\\.")[1].equals(FieldNames.RULE_MANDATORY)) {
|
|
853
|
pair.setFieldValue(rule.getMandatory());
|
|
854
|
}
|
|
855
|
else if (fieldName.split("\\.")[1].equals(FieldNames.RULE_WEIGHT)) {
|
|
856
|
pair.setFieldValue(rule.getWeight());
|
|
857
|
}
|
|
858
|
else if (fieldName.split("\\.")[1].equals(FieldNames.RULE_PROVIDER_INFORMATION)) {
|
|
859
|
pair.setFieldValue(rule.getProvider_information());
|
|
860
|
}
|
|
861
|
else{
|
|
862
|
pair.setFieldValue(rule.getConfiguration().getProperty(fieldName.split("\\.")[1]));
|
|
863
|
}
|
|
864
|
logger.debug("getting rule value pairs-addpair: "+fieldName+"-"+rule.getConfiguration().getProperty(fieldName.split("\\.")[1]));
|
|
865
|
ruleValues.add(pair);
|
|
866
|
}
|
|
867
|
return ruleValues;
|
|
868
|
} catch (Exception e) {
|
|
869
|
logger.error("Error getting ruleValue pairs", e);
|
|
870
|
throw new OpenAIREValidatorException(e);
|
|
871
|
}
|
|
872
|
|
|
873
|
}
|
|
874
|
|
|
875
|
|
|
876
|
@Override
|
|
877
|
public Properties getRuleProperties(String ruleId) throws OpenAIREValidatorException {
|
|
878
|
try {
|
|
879
|
logger.debug("getting rule properties with id "+ruleId);
|
|
880
|
return ruleStoredDao.getProperties(ruleId);
|
|
881
|
}
|
|
882
|
catch (Exception e) {
|
|
883
|
logger.error("Error getting rule properties with id "+ruleId, e);
|
|
884
|
throw new OpenAIREValidatorException(e);
|
|
885
|
}
|
|
886
|
|
|
887
|
}
|
|
888
|
|
|
889
|
|
|
890
|
@Override
|
|
891
|
public String deleteRule(String ruleId) throws OpenAIREValidatorException {
|
|
892
|
try {
|
|
893
|
logger.debug("deleting rule with id "+ruleId);
|
|
894
|
return ruleStoredDao.delete(ruleId);
|
|
895
|
}
|
|
896
|
catch (Exception e) {
|
|
897
|
logger.error("Error deleting rule with id "+ruleId, e);
|
|
898
|
throw new OpenAIREValidatorException(e);
|
|
899
|
}
|
|
900
|
}
|
|
901
|
|
|
902
|
@Override
|
|
903
|
public List<String> getConstantRuleTypes() throws OpenAIREValidatorException {
|
|
904
|
try {
|
|
905
|
logger.debug("getting all rule types");
|
|
906
|
List<String> ruleTypes = new ArrayList<String>();
|
|
907
|
for (String rule : RuleTypes.getTypes())
|
|
908
|
ruleTypes.add(rule);
|
|
909
|
return ruleTypes;
|
|
910
|
}
|
|
911
|
catch (Exception e) {
|
|
912
|
logger.error("Error getting all rule types", e);
|
|
913
|
throw new OpenAIREValidatorException(e);
|
|
914
|
}
|
|
915
|
}
|
|
916
|
|
|
917
|
@Override
|
|
918
|
public String[] getJobTypesAsArray() throws OpenAIREValidatorException {
|
|
919
|
logger.debug("getting job types as array");
|
|
920
|
return JobTypes.getTypes();
|
|
921
|
}
|
|
922
|
|
|
923
|
@Override
|
|
924
|
public List<String> getRuleLabels(String type) throws OpenAIREValidatorException {
|
|
925
|
try {
|
|
926
|
logger.debug("getting rule labels for type " + type);
|
|
927
|
List<String> labels = new ArrayList<String>();
|
|
928
|
List<FieldDetails> generalFields = FieldsAndDetails.getFieldsAndDetails("Rules");
|
|
929
|
List<FieldDetails> subFields = FieldsAndDetails.getFieldsAndDetails(TableNames.getTableNameByClass(RuleTypes.getClassOfType(type)));
|
|
930
|
for (FieldDetails field : generalFields) {
|
|
931
|
if (field.isForDet() && !field.getFieldName().equals(FieldNames.RULE_TYPE) && !field.getFieldName().equals(FieldNames.RULE_JOBTYPE))
|
|
932
|
labels.add(field.getTableName() + "." + field.getFieldName());
|
|
933
|
}
|
|
934
|
if (subFields != null) {
|
|
935
|
for (FieldDetails field : subFields) {
|
|
936
|
if (field.isForDet())
|
|
937
|
labels.add(field.getTableName() + "." + field.getFieldName());
|
|
938
|
}
|
|
939
|
}
|
|
940
|
return labels;
|
|
941
|
}catch (Exception e) {
|
|
942
|
logger.error("getting rule labels for type " + type, e);
|
|
943
|
throw new OpenAIREValidatorException(e);
|
|
944
|
}
|
|
945
|
}
|
|
946
|
|
|
947
|
@Override
|
|
948
|
public Serializable getRuleClassInstanceByType(String type, Properties pros, int id) throws OpenAIREValidatorException {
|
|
949
|
logger.debug("getting rule object of type "+type);
|
|
950
|
String classname = RuleTypes.getClassOfType(type);
|
|
951
|
if (classname == null){
|
|
952
|
logger.debug("error getting rule object of type "+type+" classname=null");
|
|
953
|
return null;
|
|
954
|
}
|
|
955
|
else {
|
|
956
|
try {
|
|
957
|
Class<?> clazz = Class.forName(classname);
|
|
958
|
logger.debug("classname: "+clazz.getName());
|
|
959
|
return (Serializable) clazz.getConstructor(new Class[]{Properties.class,Integer.TYPE}).newInstance(pros,id);
|
|
960
|
|
|
961
|
} catch (ClassNotFoundException e) {
|
|
962
|
logger.debug("error getting rule object: "+e);
|
|
963
|
return null;
|
|
964
|
} catch (NoSuchMethodException e) {
|
|
965
|
logger.debug("error getting rule object: "+e);
|
|
966
|
return null;
|
|
967
|
} catch (InvocationTargetException e) {
|
|
968
|
logger.debug("error getting rule object: "+e);
|
|
969
|
return null;
|
|
970
|
} catch (InstantiationException e) {
|
|
971
|
logger.debug("error getting rule object: "+e);
|
|
972
|
return null;
|
|
973
|
} catch (IllegalAccessException e) {
|
|
974
|
logger.debug("error getting rule object: "+e);
|
|
975
|
return null;
|
|
976
|
}
|
|
977
|
}
|
|
978
|
|
|
979
|
}
|
|
980
|
|
|
981
|
|
|
982
|
@Override
|
|
983
|
public List<String> getAllRuleIdsByJobType(String jobType)
|
|
984
|
throws OpenAIREValidatorException {
|
|
985
|
try {
|
|
986
|
logger.debug("getting all rule ids by job Type");
|
|
987
|
List<String> retList= new ArrayList<String>();
|
|
988
|
List<RuleStored> tempList = ruleStoredDao.getAllRulesByJobType(jobType);
|
|
989
|
for (RuleStored rule : tempList ){
|
|
990
|
retList.add(rule.getId());
|
|
991
|
}
|
|
992
|
return retList;
|
|
993
|
}
|
|
994
|
catch (Exception e) {
|
|
995
|
logger.error("Error getting all rule ids by job Type", e);
|
|
996
|
throw new OpenAIREValidatorException(e);
|
|
997
|
}
|
|
998
|
}
|
|
999
|
|
|
1000
|
|
|
1001
|
|
|
1002
|
|
|
1003
|
@Override
|
|
1004
|
public List<String> getValidationErrors(int jobId, int ruleId) throws OpenAIREValidatorException {
|
|
1005
|
try {
|
|
1006
|
logger.debug("getting validation errors of job " + jobId + " and rule " + ruleId);
|
|
1007
|
return taskStoredDao.getValidationErrors(Integer.toString(jobId),Integer.toString(ruleId));
|
|
1008
|
} catch (Exception e) {
|
|
1009
|
logger.error("Error getting validation errors of job " + jobId + " and rule " + ruleId, e);
|
|
1010
|
throw new OpenAIREValidatorException(e);
|
|
1011
|
}
|
|
1012
|
}
|
|
1013
|
|
|
1014
|
@Override
|
|
1015
|
public boolean userOverridesRepoRegistration(String user)
|
|
1016
|
throws OpenAIREValidatorException {
|
|
1017
|
logger.debug("checking if user " + user + " overrides repo registration procedures");
|
|
1018
|
if (this.repoRegistrationOverride.contains(user)) {
|
|
1019
|
logger.debug("overrides");
|
|
1020
|
return true;
|
|
1021
|
} else {
|
|
1022
|
logger.debug("not overrides");
|
|
1023
|
return false;
|
|
1024
|
}
|
|
1025
|
}
|
|
1026
|
|
|
1027
|
@Override
|
|
1028
|
public JobSubmitted getJobSubmitted(String jobId) throws OpenAIREValidatorException {
|
|
1029
|
try {
|
|
1030
|
logger.debug("getting submitted job with id " + jobId);
|
|
1031
|
return jobSubmittedDao.get(jobId);
|
|
1032
|
}catch (Exception e) {
|
|
1033
|
logger.error("getting submitted job with id " + jobId, e);
|
|
1034
|
throw new OpenAIREValidatorException(e);
|
|
1035
|
}
|
|
1036
|
}
|
|
1037
|
|
|
1038
|
@Override
|
|
1039
|
public List<Entry> getJobSummary(String jobId, String groupBy) throws OpenAIREValidatorException {
|
|
1040
|
try {
|
|
1041
|
logger.debug("Getting job summary for job " + jobId +" with groupBy: "+groupBy);
|
|
1042
|
List<Entry> entries = null;
|
|
1043
|
if(jobSubmittedDao.getJobError(jobId))
|
|
1044
|
return null;
|
|
1045
|
entries = jobSubmittedDao.getJobSummary(jobId,groupBy);
|
|
1046
|
return entries;
|
|
1047
|
} catch (Exception e) {
|
|
1048
|
logger.error("error getting job summary for job " + jobId, e);
|
|
1049
|
throw new OpenAIREValidatorException(e);
|
|
1050
|
}
|
|
1051
|
}
|
|
1052
|
|
|
1053
|
@Override
|
|
1054
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
1055
|
public void deleteOldJobs(String date,String mode) throws OpenAIREValidatorException {
|
|
1056
|
try {
|
|
1057
|
logger.debug("Deleting jobs older than "+date);
|
|
1058
|
if (mode.equalsIgnoreCase("uncompleted_only")) {
|
|
1059
|
jobSubmittedDao.deleteUncompletedJobs();
|
|
1060
|
jobSubmittedDao.deleteJobsForRegistration();
|
|
1061
|
}
|
|
1062
|
else if (mode.equalsIgnoreCase("custom_only"))
|
|
1063
|
jobSubmittedDao.deleteOldCustomOnly(date);
|
|
1064
|
else if (mode.equalsIgnoreCase("all"))
|
|
1065
|
jobSubmittedDao.deleteOld(date);
|
|
1066
|
} catch (Exception e) {
|
|
1067
|
logger.error("Error deleting old jobs", e);
|
|
1068
|
throw new OpenAIREValidatorException(e);
|
|
1069
|
}
|
|
1070
|
}
|
|
1071
|
|
|
1072
|
@Override
|
|
1073
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
1074
|
public void cleanUncompletedJobs() throws OpenAIREValidatorException {
|
|
1075
|
try {
|
|
1076
|
logger.debug("Deleting uncompleted jobs");
|
|
1077
|
jobSubmittedDao.deleteJobsForRegistration();
|
|
1078
|
} catch (Exception e) {
|
|
1079
|
logger.error("Error deleting old jobs", e);
|
|
1080
|
throw new OpenAIREValidatorException(e);
|
|
1081
|
}
|
|
1082
|
}
|
|
1083
|
|
|
1084
|
@Override
|
|
1085
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
1086
|
public List<String> getDistinctGroupByValues(String jobId) throws OpenAIREValidatorException {
|
|
1087
|
List<String> ret = null;
|
|
1088
|
try {
|
|
1089
|
logger.debug("Getting distinct groupBy values for job:"+ jobId );
|
|
1090
|
ret = jobSubmittedDao.getDistinctGroupByValues(jobId);
|
|
1091
|
|
|
1092
|
} catch (Exception e) {
|
|
1093
|
logger.error("Error Getting distinct groupBy values for job", e);
|
|
1094
|
throw new OpenAIREValidatorException(e);
|
|
1095
|
}
|
|
1096
|
return ret;
|
|
1097
|
}
|
|
1098
|
|
|
1099
|
@Override
|
|
1100
|
@Transactional(propagation = Propagation.REQUIRED)
|
|
1101
|
public String getFilteredScore(String jobId, String groupBy) throws OpenAIREValidatorException {
|
|
1102
|
String ret = null;
|
|
1103
|
try {
|
|
1104
|
logger.debug("Getting filtered score for job:"+ jobId+ " and groupBy: "+groupBy );
|
|
1105
|
ret = jobSubmittedDao.getFilteredScore(jobId, groupBy);
|
|
1106
|
|
|
1107
|
} catch (Exception e) {
|
|
1108
|
logger.error("Error Getting distinct groupBy values for job", e);
|
|
1109
|
throw new OpenAIREValidatorException(e);
|
|
1110
|
}
|
|
1111
|
return ret;
|
|
1112
|
}
|
|
1113
|
|
|
1114
|
@Override
|
|
1115
|
public Map<String, String> getRuleSetsMap() throws OpenAIREValidatorException {
|
|
1116
|
Map<String, String> map = new HashMap<String, String>();
|
|
1117
|
List<RuleSet> ruleSets = ruleSetDao.getRuleSetIdNames();
|
|
1118
|
for(RuleSet ruleSet : ruleSets)
|
|
1119
|
{
|
|
1120
|
map.put(ruleSet.getId().toString(), ruleSet.getName());
|
|
1121
|
}
|
|
1122
|
return map;
|
|
1123
|
}
|
|
1124
|
|
|
1125
|
@Override
|
|
1126
|
public Map<String, String> getRuleSetsMap(String deployEnvironment) throws OpenAIREValidatorException {
|
|
1127
|
Map<String, String> map = new HashMap<String, String>();
|
|
1128
|
List<RuleSet> ruleSets = ruleSetDao.getRuleSetIdNames();
|
|
1129
|
for(RuleSet ruleSet : ruleSets)
|
|
1130
|
{
|
|
1131
|
if (ruleSet.getVisibility().contains(deployEnvironment))
|
|
1132
|
map.put(ruleSet.getId().toString(), ruleSet.getName());
|
|
1133
|
}
|
|
1134
|
return map;
|
|
1135
|
}
|
|
1136
|
|
|
1137
|
private ChainRule<Rule> handleChain(RuleStored tempRule) throws OpenAIREValidatorException {
|
|
1138
|
logger.debug("chain rule found");
|
|
1139
|
List<Rule> rules_chain = new ArrayList<Rule>();
|
|
1140
|
RuleStored tempRuleChain1=ruleStoredDao.get(tempRule.getConfiguration().getProperty("rule_1"));
|
|
1141
|
if(tempRuleChain1.getType().equals("ChainRule")) {
|
|
1142
|
ChainRule<Rule> chainRule1 = this.handleChain(tempRuleChain1);
|
|
1143
|
rules_chain.add(chainRule1);
|
|
1144
|
ruleIdRegistry++;
|
|
1145
|
} else {
|
|
1146
|
rules_chain.add((Rule) this.getRuleClassInstanceByType(tempRuleChain1.getType(), tempRuleChain1.getConfiguration(), ruleIdRegistry));
|
|
1147
|
ruleIdRegistry++;
|
|
1148
|
}
|
|
1149
|
RuleStored tempRuleChain2=ruleStoredDao.get(tempRule.getConfiguration().getProperty("rule_2"));
|
|
1150
|
if(tempRuleChain2.getType().equals("ChainRule")) {
|
|
1151
|
ChainRule<Rule> chainRule2 = this.handleChain(tempRuleChain2);
|
|
1152
|
rules_chain.add(chainRule2);
|
|
1153
|
ruleIdRegistry++;
|
|
1154
|
} else {
|
|
1155
|
rules_chain.add((Rule) this.getRuleClassInstanceByType(tempRuleChain2.getType(), tempRuleChain2.getConfiguration(), ruleIdRegistry));
|
|
1156
|
ruleIdRegistry++;
|
|
1157
|
}
|
|
1158
|
Properties chainPros = new Properties();
|
|
1159
|
chainPros.setProperty(ChainRule.TYPE,tempRule.getConfiguration().getProperty(ChainRule.TYPE));
|
|
1160
|
ChainRule<Rule> chainRule = new ChainRule<Rule>(chainPros, ruleIdRegistry, rules_chain);
|
|
1161
|
return chainRule;
|
|
1162
|
}
|
|
1163
|
|
|
1164
|
|
|
1165
|
|
|
1166
|
public RuleSetDAO getRuleSetDao() {
|
|
1167
|
return ruleSetDao;
|
|
1168
|
}
|
|
1169
|
|
|
1170
|
public void setRuleSetDao(RuleSetDAO ruleSetDao) {
|
|
1171
|
this.ruleSetDao = ruleSetDao;
|
|
1172
|
}
|
|
1173
|
|
|
1174
|
public Validator getValidator() {
|
|
1175
|
return validator;
|
|
1176
|
}
|
|
1177
|
|
|
1178
|
public void setValidator(Validator validator) {
|
|
1179
|
this.validator = validator;
|
|
1180
|
}
|
|
1181
|
|
|
1182
|
public RuleStoredDAO getRuleWebDao() {
|
|
1183
|
return ruleStoredDao;
|
|
1184
|
}
|
|
1185
|
|
|
1186
|
public void setRuleWebDao(RuleStoredDAO ruleWebDao) {
|
|
1187
|
this.ruleStoredDao = ruleWebDao;
|
|
1188
|
}
|
|
1189
|
|
|
1190
|
public JobSubmittedDAO getJobSubmittedDao() {
|
|
1191
|
return jobSubmittedDao;
|
|
1192
|
}
|
|
1193
|
|
|
1194
|
public void setJobSubmittedDao(JobSubmittedDAO jobSubmittedDao) {
|
|
1195
|
this.jobSubmittedDao = jobSubmittedDao;
|
|
1196
|
}
|
|
1197
|
|
|
1198
|
@Override
|
|
1199
|
public void linkRules(int ruleRegistry, int ruleStored) {
|
|
1200
|
this.ruleLinkingMap.put(ruleRegistry, ruleStored);
|
|
1201
|
}
|
|
1202
|
|
|
1203
|
@Override
|
|
1204
|
public int getRuleFromLink(int ruleRegistry) {
|
|
1205
|
return this.ruleLinkingMap.get(ruleRegistry);
|
|
1206
|
}
|
|
1207
|
|
|
1208
|
public RuleStoredDAO getRuleStoredDao() {
|
|
1209
|
return ruleStoredDao;
|
|
1210
|
}
|
|
1211
|
|
|
1212
|
public void setRuleStoredDao(RuleStoredDAO ruleStoredDao) {
|
|
1213
|
this.ruleStoredDao = ruleStoredDao;
|
|
1214
|
}
|
|
1215
|
|
|
1216
|
public TaskStoredDAO getTaskStoredDao() {
|
|
1217
|
return taskStoredDao;
|
|
1218
|
}
|
|
1219
|
|
|
1220
|
public void setTaskStoredDao(TaskStoredDAO taskStoredDao) {
|
|
1221
|
this.taskStoredDao = taskStoredDao;
|
|
1222
|
}
|
|
1223
|
|
|
1224
|
public Emailer getEmailer() {
|
|
1225
|
return emailer;
|
|
1226
|
}
|
|
1227
|
public void setEmailer(Emailer emailer) {
|
|
1228
|
this.emailer = emailer;
|
|
1229
|
}
|
|
1230
|
public String getValBaseUrl() {
|
|
1231
|
return valBaseUrl;
|
|
1232
|
}
|
|
1233
|
public void setValBaseUrl(String valBaseUrl) {
|
|
1234
|
this.valBaseUrl = valBaseUrl;
|
|
1235
|
}
|
|
1236
|
public Map<Integer, Integer> getRuleLinkingMap() {
|
|
1237
|
return ruleLinkingMap;
|
|
1238
|
}
|
|
1239
|
|
|
1240
|
public void setRuleLinkingMap(Map<Integer, Integer> ruleLinkingMap) {
|
|
1241
|
this.ruleLinkingMap = ruleLinkingMap;
|
|
1242
|
}
|
|
1243
|
|
|
1244
|
public Integer getJobIdRegistry() {
|
|
1245
|
return jobIdRegistry;
|
|
1246
|
}
|
|
1247
|
|
|
1248
|
public void setJobIdRegistry(Integer jobIdRegistry) {
|
|
1249
|
this.jobIdRegistry = jobIdRegistry;
|
|
1250
|
}
|
|
1251
|
|
|
1252
|
public Integer getRuleIdRegistry() {
|
|
1253
|
return ruleIdRegistry;
|
|
1254
|
}
|
|
1255
|
|
|
1256
|
public void setRuleIdRegistry(Integer ruleIdRegistry) {
|
|
1257
|
this.ruleIdRegistry = ruleIdRegistry;
|
|
1258
|
}
|
|
1259
|
|
|
1260
|
// public List<String> getRepoRegistrationOverride() {
|
|
1261
|
// return repoRegistrationOverride;
|
|
1262
|
// }
|
|
1263
|
|
|
1264
|
public void setRepoRegistrationOverride(String repoRegistrationOverride) {
|
|
1265
|
String[] recps = repoRegistrationOverride.split(",");
|
|
1266
|
|
|
1267
|
for (String recp : recps) {
|
|
1268
|
recp = recp.trim();
|
|
1269
|
this.repoRegistrationOverride.add(recp);
|
|
1270
|
}
|
|
1271
|
}
|
|
1272
|
|
|
1273
|
public ValidatorRestore getValRestore() {
|
|
1274
|
return valRestore;
|
|
1275
|
}
|
|
1276
|
|
|
1277
|
|
|
1278
|
public void setValRestore(ValidatorRestore valRestore) {
|
|
1279
|
this.valRestore = valRestore;
|
|
1280
|
}
|
|
1281
|
|
|
1282
|
}
|
|
1283
|
|
|
1284
|
/*
|
|
1285
|
public List<Entry> getJobSummary(String jobId) throws OpenAIREValidatorException {
|
|
1286
|
try {
|
|
1287
|
logger.debug("Getting job summary for job " + jobId);
|
|
1288
|
List<Entry> entries = null;
|
|
1289
|
entries = new ArrayList<Entry>();
|
|
1290
|
if(jobSubmittedDao.getJobError(jobId))
|
|
1291
|
return null;
|
|
1292
|
List<String> ruleIds = taskStoredDao.getDistinctTasksOfJob(jobId);
|
|
1293
|
new ArrayList<Integer>();
|
|
1294
|
float score = 0;
|
|
1295
|
float weights = 0 ;
|
|
1296
|
for (String ruleId : ruleIds) {
|
|
1297
|
int successes = 0, total = 0;
|
|
1298
|
float perc = 0;
|
|
1299
|
List<String> errors = new ArrayList<String>();
|
|
1300
|
Entry entry = new Entry();
|
|
1301
|
List<TaskStored> tasksFinished = taskStoredDao.getFinishedTasks(jobId,ruleId);
|
|
1302
|
for(TaskStored task : tasksFinished){
|
|
1303
|
total++;
|
|
1304
|
if (task.getSuccess())
|
|
1305
|
successes++;
|
|
1306
|
else
|
|
1307
|
errors.add(task.getRecordIdentifier());
|
|
1308
|
}
|
|
1309
|
if (total > 0)
|
|
1310
|
entry.setSuccesses(successes + "/" + total);
|
|
1311
|
else
|
|
1312
|
entry.setSuccesses("--");
|
|
1313
|
entry.setErrors(errors);
|
|
1314
|
RuleStored rule = ruleStoredDao.get(ruleId);
|
|
1315
|
if (rule.getMandatory().equals("true"))
|
|
1316
|
weights += Integer.parseInt(rule.getWeight());
|
|
1317
|
entry.setName(rule.getName());
|
|
1318
|
entry.setDescription(rule.getDescription());
|
|
1319
|
entry.setWeight(Integer.parseInt(rule.getWeight()));
|
|
1320
|
entry.setRuleId(Integer.parseInt(rule.getId()));
|
|
1321
|
if (successes < total)
|
|
1322
|
entry.setHasErrors(true);
|
|
1323
|
else
|
|
1324
|
entry.setHasErrors(false);
|
|
1325
|
perc=100*successes/total;
|
|
1326
|
if (rule.getMandatory().equals("true"))
|
|
1327
|
score += perc * Integer.parseInt(rule.getWeight());
|
|
1328
|
entries.add(entry);
|
|
1329
|
}
|
|
1330
|
score /= weights;
|
|
1331
|
|
|
1332
|
jobSubmittedDao.setScore(jobId,Integer.toString((int)Math.ceil(score)));
|
|
1333
|
return entries;
|
|
1334
|
} catch (Exception e) {
|
|
1335
|
logger.error("error getting job summary for job " + jobId, e);
|
|
1336
|
throw new OpenAIREValidatorException(e);
|
|
1337
|
}
|
|
1338
|
} */
|
|
1339
|
|