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package gr.uoa.di.validator.database;
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import java.sql.Connection;
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import java.sql.PreparedStatement;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.TreeMap;
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import javax.sql.DataSource;
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import org.apache.log4j.Logger;
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import com.unboundid.util.Base64;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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//import java.io.UnsupportedEncodingException;
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public class OpenDoarRepositoryFactoryDirectImpl implements OpenDoarRepositoryFactory {
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private static Logger logger = Logger.getLogger(OpenDoarRepositoryFactoryDirectImpl.class);
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private DataSource openAireDataSource = null;
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public Repository getRepository(String officialName, String id) throws SQLException {
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Connection conn = null;
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Repository repo = null;
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try {
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logger.debug("getting repository " + officialName + " from openaire db");
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conn = openAireDataSource.getConnection();
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PreparedStatement stm = null, stm1 = null;
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stm = conn.prepareStatement("SELECT * FROM datasources d WHERE d.id = ?");
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stm.setString(1, id);
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ResultSet rs = stm.executeQuery();
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if (rs.next()) {
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repo = new Repository();
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repo.setId(rs.getString("Id"));
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repo.setOfficialName(officialName);
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repo.setEnglishName(rs.getString("englishname"));
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repo.setWebsiteUrl(rs.getString("websiteurl"));
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repo.setLogoUrl(rs.getString("logourl"));
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repo.setContactEmail(rs.getString("contactemail"));
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repo.setLatitude(rs.getDouble("latitude"));
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repo.setLongitude(rs.getDouble("longitude"));
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repo.setTimezone(rs.getDouble("timezone"));
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repo.setNamespacePrefix(rs.getString("namespaceprefix"));
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repo.setDescription(rs.getString("description"));
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repo.setCollectedFrom(rs.getString("collectedfrom"));
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// repo.setOptional1(rs.getString("optional1"));
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// repo.setOptional2(rs.getString("optional2"));
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repo.setActivationId("activationid");
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repo.setTypology(rs.getString("typology"));
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repo.setDatasourceClass(rs.getString("datasourceClass"));
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repo.setProvenanceActionClass(rs.getString("provenanceactionclass"));
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repo.setDateOfCollection(rs.getDate("dateofcollection"));
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repo.setIssn(rs.getString("issn"));
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repo.setEissn(rs.getString("eissn"));
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repo.setLissn(rs.getString("lissn"));
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rs.close();
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stm.close();
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stm = conn.prepareStatement("SELECT * FROM api a WHERE a.datasource = ? ORDER BY id");
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stm.setString(1, repo.getId());
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rs = stm.executeQuery();
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logger.debug("searching api");
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while (rs.next()) {
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RepositoryInterface iFace = new RepositoryInterface();
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if (rs.getBoolean("useedited")) {
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iFace.setBaseUrl(rs.getString("edited"));
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iFace.setAccessProtocol(rs.getString("editedprotocolclass"));
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}
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else {
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iFace.setBaseUrl(rs.getString("original"));
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iFace.setAccessProtocol(rs.getString("originalprotocolclass"));
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}
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// repo.setApiTypology(rs.getString("typology"));
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iFace.setId(rs.getString("id"));
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String apiId = rs.getString("id");
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logger.debug("apiId: "+ apiId);
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89
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stm1 = conn.prepareStatement("SELECT * FROM apicollections ac WHERE ac.api = ?");
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stm1.setString(1, apiId);
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ResultSet rs1 = stm1.executeQuery();
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String setEdited = null;
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iFace.setAccessSet("none");
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logger.debug("searching apicollections");
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while (rs1.next()) {
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if (rs1.getString("accessparam").equals("SET")) {
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iFace.setAccessSet(rs1.getString("accessvalue"));
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} else if (rs1.getString("accessparam").equals("SET_EDITED")) {
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setEdited = rs1.getString("accessvalue");
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} else if (rs1.getString("accessparam").equals("FORMAT")) {
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iFace.setAccessFormat(rs1.getString("accessvalue"));
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}
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}
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if (setEdited != null)
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iFace.setAccessSet(setEdited);
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if (iFace.getAccessSet().equalsIgnoreCase("driver")) {
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iFace.setCompliance("Driver");
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} else if (iFace.getAccessSet().equalsIgnoreCase("ec_fundedresources")) {
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iFace.setCompliance("OpenAIRE 2.0");
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} else if (iFace.getAccessSet().equalsIgnoreCase("openaire")) {
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iFace.setCompliance("OpenAIRE 3.0");
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} else if (iFace.getAccessSet().equalsIgnoreCase("openaire_data")) {
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iFace.setCompliance("OpenAIRE 3.0");
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} else if (iFace.getAccessSet().equalsIgnoreCase("none")) {
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iFace.setCompliance("notCompatible");
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} else {
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iFace.setCompliance("UNKNOWN");
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}
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rs1.close();
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stm1.close();
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repo.getInterfaces().add(iFace);
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}
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rs.close();
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stm.close();
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// stm = conn.prepareStatement("select legal_name from datasources, organizations, datasources_organizations where datasourceid=datasource and organizationid=organization and official_name = ?");
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stm = conn.prepareStatement("SELECT o.legalname, o.countryclass FROM datasources d, organizations o, datasource_organization dor WHERE dor.datasource=d.id AND o.id=dor.organization AND d.id = ?");
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stm.setString(1, id);
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rs = stm.executeQuery();
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if (rs.next()) {
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repo.setOrganization(rs.getString(1));
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repo.setCountryCode(rs.getString(2));
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}
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rs.close();
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stm.close();
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}
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} catch (SQLException e) {
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logger.error("Error getting repo " + officialName + " from openaire db", e);
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throw e;
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}
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finally {
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if (conn != null)
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try {
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conn.close();
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} catch (SQLException e) {
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logger.error("Error closing connection", e);
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}
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}
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return repo;
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}
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@Override
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public String storeRepository(Repository repo, String datatype) throws Exception {
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String retMessage = null;
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Connection conn = null;
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try {
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conn = openAireDataSource.getConnection();
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PreparedStatement stm = null;
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ResultSet rs = null;
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logger.debug("storing " + datatype + " repository..");
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if (datatype.equalsIgnoreCase("opendoar")) {
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logger.debug("updating datasources values..");
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stm = conn.prepareStatement("UPDATE datasources SET englishname = ?, logourl = ?, timezone = ?, optional1 = ?, activationid = ?, contactemail = ? WHERE id = ?");
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stm.setString(1, repo.getEnglishName());
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stm.setString(2, repo.getLogoUrl());
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stm.setDouble(3, repo.getTimezone());
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stm.setString(4, repo.getRegisteredBy());
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stm.setString(5, repo.getActivationId());
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stm.setString(6, repo.getContactEmail());
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stm.setString(7, repo.getId());
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if (stm.executeUpdate() > 0 ) {
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logger.debug("finished updating values in datasources..");
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stm.close();
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conn.commit();
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}
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190
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191
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logger.debug("checking current values in api..");
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192
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193
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stm = conn.prepareStatement("SELECT COUNT(*) FROM api WHERE datasource = ?");
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194
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stm.setString(1, repo.getId());
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195
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rs = stm.executeQuery();
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196
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int noCurrentInApi = 0;
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197
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if (rs.next()) {
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noCurrentInApi = rs.getInt(1);
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}
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200
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stm.close();
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201
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rs.close();
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202
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203
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204
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for (RepositoryInterface iFace : repo.getInterfaces()) {
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logger.debug("checking if interface : " + iFace.getId() + " already exists in api..");
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stm = conn.prepareStatement("SELECT * FROM api WHERE datasource = ? AND id = ?");
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207
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stm.setString(1, repo.getId());
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208
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stm.setString(2, iFace.getId());
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209
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rs = stm.executeQuery();
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210
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211
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if (!rs.next()) {
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212
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logger.debug("not exist..");
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213
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stm.close();
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214
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rs.close();
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215
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216
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stm = conn.prepareStatement("INSERT INTO api (id, typology, originalprotocolclass, original, datasource, _dnet_resource_identifier_) VALUES (?,?,?,?,?,?)");
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217
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iFace.setId("api_________::" + repo.getId() + "::" + noCurrentInApi);
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218
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logger.debug("creating new api_id: " + iFace.getId());
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219
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noCurrentInApi++;
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220
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221
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String apiTypology = "UNKNOWN";
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222
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if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0_data") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire2.0")) {
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223
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apiTypology = "openaire";
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224
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} else if (iFace.getDesiredCompatibilityLevel().contains("driver")) {
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225
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apiTypology = "driver";
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226
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}
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227
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stm.setString(1, iFace.getId());
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228
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stm.setString(2, apiTypology);
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229
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stm.setString(3, iFace.getAccessProtocol());
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230
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stm.setString(4, iFace.getBaseUrl());
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231
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stm.setString(5, repo.getId());
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232
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stm.setString(6, iFace.getId());
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233
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234
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if (stm.executeUpdate() > 0) {
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235
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logger.debug(iFace.getId() + " inserted in api..");
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236
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logger.debug("now inserting in apicollections..");
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237
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stm.close();
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238
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rs.close();
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239
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conn.commit();
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240
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241
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stm = conn.prepareStatement("INSERT INTO apicollections (accessparam, accessvalue, api, _dnet_resource_identifier_) VALUES (?,?,?,?)");
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242
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243
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stm.setString(1,"FORMAT");
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244
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stm.setString(2, iFace.getAccessFormat());
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245
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stm.setString(3, iFace.getId());
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246
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stm.setString(4,"FORMAT" + "@@" + iFace.getAccessFormat() + "@@" + iFace.getId());
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247
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248
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stm.addBatch();
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249
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250
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stm.setString(1,"SET");
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251
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stm.setString(2, iFace.getAccessSet());
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252
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stm.setString(3, iFace.getId());
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253
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stm.setString(4,"SET" + "@@" + iFace.getAccessSet() + "@@" + iFace.getId());
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254
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255
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stm.addBatch();
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256
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257
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if (stm.executeBatch()[0] > 0) {
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258
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logger.debug(iFace.getId() + " inserted in apicollections.");
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259
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}
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260
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logger.debug("finished updating set + format values in apicollections.");
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261
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stm.close();
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262
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conn.commit();
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263
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}
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264
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265
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} else {
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266
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267
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logger.debug("exists..");
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268
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boolean edited = false;
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269
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if( rs.getString("original") == null || rs.getString("originalprotocolclass") == null || !rs.getString("original").equalsIgnoreCase(iFace.getBaseUrl()) || !rs.getString("originalprotocolclass").equalsIgnoreCase(iFace.getAccessProtocol()) ) {
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270
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edited = true;
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271
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}
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272
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logger.debug("updating edited values in api..");
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273
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stm.close();
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274
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rs.close();
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275
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276
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String apiTypology = "UNKNOWN";
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277
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if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire2.0")) {
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278
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apiTypology = "openaire";
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279
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} else if (iFace.getDesiredCompatibilityLevel().contains("driver")) {
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280
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apiTypology = "driver";
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281
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}
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282
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283
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stm = conn.prepareStatement("UPDATE api SET typology = ?, edited = ?, editedprotocolclass = ?, useedited = ? WHERE datasource = ? AND id = ? ");
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284
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stm.setString(1, apiTypology);
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285
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if (edited) {
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286
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stm.setString(2, iFace.getBaseUrl());
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287
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stm.setString(3, iFace.getAccessProtocol());
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288
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stm.setBoolean(4, true);
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289
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} else {
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290
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stm.setString(2, null);
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291
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stm.setString(3, null);
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292
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stm.setBoolean(4, false);
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293
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}
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294
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stm.setString(5, repo.getId());
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295
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stm.setString(6, iFace.getId());
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296
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297
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if (stm.executeUpdate() > 0 ) {
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298
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logger.debug("finished updating values in api..");
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299
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stm.close();
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300
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conn.commit();
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301
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}
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302
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logger.debug("updating apicollections..");
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303
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304
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logger.debug("deleting current values from apicollections..");
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305
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stm = conn.prepareStatement("DELETE FROM apicollections WHERE api = ?");
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306
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307
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stm.setString(1, iFace.getId());
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308
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309
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if (stm.executeUpdate() > 0) {
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310
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logger.debug("values for interface " + iFace.getId() + " deleted from api_collections..");
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311
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stm.close();
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312
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rs.close();
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313
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conn.commit();
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314
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315
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}
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316
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logger.debug("now inserting in apicollections..");
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317
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318
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stm = conn.prepareStatement("INSERT INTO apicollections (accessparam, accessvalue, api, _dnet_resource_identifier_) VALUES (?,?,?,?)");
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319
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320
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stm.setString(1,"FORMAT");
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321
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stm.setString(2, iFace.getAccessFormat());
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322
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stm.setString(3, iFace.getId());
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323
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stm.setString(4,"FORMAT" + "@@" + iFace.getAccessFormat() + "@@" + iFace.getId());
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324
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325
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stm.addBatch();
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326
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327
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stm.setString(1,"SET");
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328
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stm.setString(2, iFace.getAccessSet());
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329
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stm.setString(3, iFace.getId());
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330
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stm.setString(4,"SET" + "@@" + iFace.getAccessSet() + "@@" + iFace.getId());
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331
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332
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stm.addBatch();
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333
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334
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if (stm.executeBatch()[0] > 0) {
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335
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logger.debug(iFace.getId() + " inserted in apicollections.");
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336
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}
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337
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logger.debug("finished updating set + format values in apicollections.");
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338
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stm.close();
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339
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conn.commit();
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340
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341
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}
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342
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logger.debug("interface : " + iFace.getId() + " inserted successfully..");
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|
343
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}
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|
344
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345
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} else if (datatype.equalsIgnoreCase("journal")||datatype.equalsIgnoreCase("aggregator")){
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|
346
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347
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logger.debug("looking if " + datatype + " " + repo.getOfficialName() + " is already in datasources");
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348
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stm = conn.prepareStatement("SELECT * FROM datasources WHERE officialname = ? OR id = ?");
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349
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stm.setString(1, repo.getOfficialName());
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350
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stm.setString(2, repo.getId());
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|
351
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|
|
352
|
rs = stm.executeQuery();
|
|
353
|
|
|
354
|
if (rs.next()) {
|
|
355
|
retMessage = datatype + " " + repo.getOfficialName() + " is already in datasources.";
|
|
356
|
logger.debug(retMessage);
|
|
357
|
|
|
358
|
stm.close();
|
|
359
|
rs.close();
|
|
360
|
} else {
|
|
361
|
logger.debug(datatype + " " + repo.getOfficialName() + " is not in datasources. Inserting..");
|
|
362
|
|
|
363
|
stm = conn.prepareStatement("INSERT INTO datasources(id, officialname, englishname, websiteurl, logourl, contactemail, latitude, longitude, timezone, namespaceprefix, collectedfrom, activationid, typology, datasourceclass, provenanceactionclass, _dnet_resource_identifier_, optional1, issn, eissn, lissn, description) VALUES(?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)");
|
|
364
|
|
|
365
|
stm.setString(1, repo.getId()); //activation id
|
|
366
|
stm.setString(2, repo.getOfficialName());
|
|
367
|
stm.setString(3, repo.getEnglishName());
|
|
368
|
stm.setString(4, repo.getWebsiteUrl());
|
|
369
|
stm.setString(5, repo.getLogoUrl());
|
|
370
|
stm.setString(6, repo.getContactEmail());
|
|
371
|
stm.setDouble(7, repo.getLatitude());
|
|
372
|
stm.setDouble(8, repo.getLongitude());
|
|
373
|
stm.setString(9, repo.getTimezone() + "");
|
|
374
|
stm.setString(10, repo.getNamespacePrefix());
|
|
375
|
stm.setString(11, repo.getCollectedFrom());
|
|
376
|
stm.setString(12, repo.getActivationId());
|
|
377
|
stm.setString(13, repo.getTypology());
|
|
378
|
stm.setString(14, repo.getDatasourceClass());
|
|
379
|
stm.setString(15, repo.getProvenanceActionClass());
|
|
380
|
stm.setString(16,repo.getId());
|
|
381
|
stm.setString(17, repo.getRegisteredBy());
|
|
382
|
stm.setString(18, repo.getIssn());
|
|
383
|
stm.setString(19, repo.getEissn());
|
|
384
|
stm.setString(20, repo.getLissn());
|
|
385
|
stm.setString(21, repo.getDescription());
|
|
386
|
|
|
387
|
if (stm.executeUpdate() > 0) {
|
|
388
|
logger.debug(datatype + " " + repo.getOfficialName() + " inserted in datasources.");
|
|
389
|
logger.debug("inserting in api..");
|
|
390
|
|
|
391
|
stm.close();
|
|
392
|
conn.commit();
|
|
393
|
|
|
394
|
|
|
395
|
int noCurrentInApi = 0;
|
|
396
|
for (RepositoryInterface iFace : repo.getInterfaces()) {
|
|
397
|
|
|
398
|
stm = conn.prepareStatement("INSERT INTO api (id, typology, originalprotocolclass, original, datasource, _dnet_resource_identifier_) VALUES (?,?,?,?,?,?)");
|
|
399
|
iFace.setId("api_________::" + repo.getId() + "::" + noCurrentInApi);
|
|
400
|
logger.debug("creating new api_id: " + iFace.getId());
|
|
401
|
noCurrentInApi++;
|
|
402
|
String apiTypology = "UNKNOWN";
|
|
403
|
if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire2.0")) {
|
|
404
|
apiTypology = "openaire";
|
|
405
|
} else if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("driver")) {
|
|
406
|
apiTypology = "driver";
|
|
407
|
}
|
|
408
|
stm.setString(1, iFace.getId());
|
|
409
|
stm.setString(2, apiTypology);
|
|
410
|
stm.setString(3, iFace.getAccessProtocol());
|
|
411
|
stm.setString(4, iFace.getBaseUrl());
|
|
412
|
stm.setString(5, repo.getId());
|
|
413
|
stm.setString(6, iFace.getId());
|
|
414
|
|
|
415
|
if (stm.executeUpdate() > 0) {
|
|
416
|
logger.debug(iFace.getId() + " inserted in api..");
|
|
417
|
logger.debug("now inserting in apicollections..");
|
|
418
|
stm.close();
|
|
419
|
rs.close();
|
|
420
|
conn.commit();
|
|
421
|
|
|
422
|
stm = conn.prepareStatement("INSERT INTO apicollections (accessparam, accessvalue, api, _dnet_resource_identifier_) VALUES (?,?,?,?)");
|
|
423
|
|
|
424
|
stm.setString(1,"FORMAT");
|
|
425
|
stm.setString(2, iFace.getAccessFormat());
|
|
426
|
stm.setString(3, iFace.getId());
|
|
427
|
stm.setString(4,"FORMAT" + "@@" + iFace.getAccessFormat() + "@@" + iFace.getId());
|
|
428
|
|
|
429
|
stm.addBatch();
|
|
430
|
|
|
431
|
stm.setString(1,"SET");
|
|
432
|
stm.setString(2, iFace.getAccessSet());
|
|
433
|
stm.setString(3, iFace.getId());
|
|
434
|
stm.setString(4,"SET" + "@@" + iFace.getAccessSet() + "@@" + iFace.getId());
|
|
435
|
|
|
436
|
stm.addBatch();
|
|
437
|
|
|
438
|
if (stm.executeBatch()[0] > 0) {
|
|
439
|
logger.debug(iFace.getId() + " inserted in apicollections.");
|
|
440
|
}
|
|
441
|
logger.debug("finished updating set + format values in apicollections.");
|
|
442
|
stm.close();
|
|
443
|
conn.commit();
|
|
444
|
}
|
|
445
|
|
|
446
|
|
|
447
|
logger.debug("interface : " + iFace.getId() + " inserted successfully..");
|
|
448
|
}
|
|
449
|
|
|
450
|
logger.debug("inserting in organizations..");
|
|
451
|
|
|
452
|
stm = conn.prepareStatement("SELECT * FROM organizations WHERE id = ?");
|
|
453
|
stm.setString(1, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
454
|
|
|
455
|
ResultSet rs1 = stm.executeQuery();
|
|
456
|
|
|
457
|
boolean exists = rs1.next();
|
|
458
|
|
|
459
|
rs1.close();
|
|
460
|
|
|
461
|
if(!exists) {
|
|
462
|
|
|
463
|
// String countryCode = "UNKNOWN";
|
|
464
|
// stm = conn.prepareStatement("SELECT code FROM class WHERE name = ?");
|
|
465
|
// stm.setString(1,repo.getCountryName());
|
|
466
|
//
|
|
467
|
// rs1 = stm.executeQuery();
|
|
468
|
//
|
|
469
|
// if ( rs1.next()) {
|
|
470
|
// countryCode = rs1.getString(1);
|
|
471
|
// stm.close();
|
|
472
|
// }
|
|
473
|
if (repo.getCountryCode() == null) {
|
|
474
|
repo.setCountryCode("UNKNOWN");
|
|
475
|
}
|
|
476
|
stm = conn.prepareStatement("INSERT INTO organizations (legalname, countryclass, id, legalshortname, collectedfrom, provenanceactionclass, _dnet_resource_identifier_) VALUES (?,?,?,?,?,?,?)");
|
|
477
|
stm.setString(1, repo.getOrganization());
|
|
478
|
stm.setString(2, repo.getCountryCode());
|
|
479
|
stm.setString(3, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
480
|
stm.setString(4, repo.getOrganization());
|
|
481
|
stm.setString(5, repo.getCollectedFrom());
|
|
482
|
stm.setString(6, repo.getProvenanceActionClass());
|
|
483
|
stm.setString(7, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
484
|
stm.executeUpdate();
|
|
485
|
logger.debug("organization" + " openaire____::" + Base64.encode(repo.getOrganization()) + " inserted in organizations.");
|
|
486
|
|
|
487
|
stm.close();
|
|
488
|
conn.commit();
|
|
489
|
} else {
|
|
490
|
logger.debug("Organization "+repo.getOrganization()+" already exists");
|
|
491
|
}
|
|
492
|
logger.debug("inserting in datasource-organizations..");
|
|
493
|
stm = conn.prepareStatement("INSERT INTO datasource_organization (organization, datasource, _dnet_resource_identifier_) VALUES (?,?,?)");
|
|
494
|
stm.setString(1, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
495
|
stm.setString(2, repo.getId());
|
|
496
|
stm.setString(3, repo.getId() + "@@" + "openaire____::" + Base64.encode(repo.getOrganization()) );
|
|
497
|
|
|
498
|
if( stm.executeUpdate()>0) {
|
|
499
|
logger.debug("organization" + "openaire____::" + Base64.encode(repo.getOrganization()) + " inserted in datasource-organizations.");
|
|
500
|
stm.close();
|
|
501
|
conn.commit();
|
|
502
|
}
|
|
503
|
}
|
|
504
|
logger.debug("Finished storing " + datatype + " repository..");
|
|
505
|
}
|
|
506
|
|
|
507
|
}
|
|
508
|
|
|
509
|
} catch (SQLException e) {
|
|
510
|
logger.error("Error storing repo " + repo.getOfficialName() + " in openaire db", e);
|
|
511
|
throw e;
|
|
512
|
} finally {
|
|
513
|
if (conn != null)
|
|
514
|
try {
|
|
515
|
conn.close();
|
|
516
|
} catch (SQLException e) {
|
|
517
|
logger.error("Error closing connection", e);
|
|
518
|
}
|
|
519
|
}
|
|
520
|
return retMessage;
|
|
521
|
}
|
|
522
|
|
|
523
|
public TreeMap<String, List<Map<String, String>>> getRepositoriesByCountry(String collectedFrom) throws SQLException {
|
|
524
|
Connection conn = null;
|
|
525
|
TreeMap<String, List<Map<String, String>>> res = new TreeMap<String, List<Map<String, String>>>();
|
|
526
|
|
|
527
|
try {
|
|
528
|
logger.debug("getting repos by country from openaire db");
|
|
529
|
String collFrom = null;
|
|
530
|
if (collectedFrom.equalsIgnoreCase("opendoar")) {
|
|
531
|
logger.debug("populating doar list");
|
|
532
|
collFrom = "openaire____::opendoar";
|
|
533
|
} else if (collectedFrom.equalsIgnoreCase("re3data")) {
|
|
534
|
logger.debug("populating re3data list");
|
|
535
|
collFrom = "openaire____::re3data";
|
|
536
|
}
|
|
537
|
conn = openAireDataSource.getConnection();
|
|
538
|
PreparedStatement ps = conn.prepareStatement("SELECT DISTINCT d.id, d.officialname, c.name, d.websitEurl FROM datasources d, organizations o, datasource_organization dor, class c WHERE dor.datasource=d.id AND o.id=dor.organization AND o.countryclass=c.code AND d.collectedfrom=? ORDER BY c.name, d.officialname");
|
|
539
|
// .prepareStatement("SELECT d.official_name, c.name, d.web_site_url FROM countries c, organizations o, datasources d, datasources_organizations dor WHERE dor.datasource=d.datasourceid AND o.organizationid=dor.organization AND o.country_of_origin = c.countryid order by c.name, d.official_name");
|
|
540
|
ps.setString(1, collFrom);
|
|
541
|
ResultSet rs = ps.executeQuery();
|
|
542
|
|
|
543
|
while (rs.next()) {
|
|
544
|
String country = rs.getString(3);
|
|
545
|
List<Map<String, String>> repos = res.get(country);
|
|
546
|
|
|
547
|
if (repos == null) {
|
|
548
|
repos = new ArrayList<Map<String, String>>();
|
|
549
|
res.put(country, repos);
|
|
550
|
}
|
|
551
|
|
|
552
|
Map<String, String> repo = new HashMap<String, String>();
|
|
553
|
repo.put("name", rs.getString(2));
|
|
554
|
repo.put("url", rs.getString(4));
|
|
555
|
repo.put("id", rs.getString(1));
|
|
556
|
repos.add(repo);
|
|
557
|
}
|
|
558
|
} catch (SQLException e) {
|
|
559
|
logger.error("Error getting repositories from openaire db", e);
|
|
560
|
throw e;
|
|
561
|
} finally {
|
|
562
|
if (conn != null) {
|
|
563
|
try {
|
|
564
|
conn.close();
|
|
565
|
} catch (SQLException e) {
|
|
566
|
logger.error("Error closing connection", e);
|
|
567
|
}
|
|
568
|
}
|
|
569
|
}
|
|
570
|
|
|
571
|
return res;
|
|
572
|
|
|
573
|
}
|
|
574
|
|
|
575
|
public DataSource getOpenAireDataSource() {
|
|
576
|
return openAireDataSource;
|
|
577
|
}
|
|
578
|
|
|
579
|
public void setOpenAireDataSource(DataSource openAireDataSource) {
|
|
580
|
this.openAireDataSource = openAireDataSource;
|
|
581
|
}
|
|
582
|
|
|
583
|
@Override
|
|
584
|
public List<Repository> getRepos(String user_mail) throws SQLException {
|
|
585
|
Connection conn = null;
|
|
586
|
Repository repo = null;
|
|
587
|
List<Repository> retRepos = new ArrayList<Repository>();
|
|
588
|
try {
|
|
589
|
logger.debug("getting repositories registered by user: " + user_mail + " from openaire db");
|
|
590
|
|
|
591
|
conn = openAireDataSource.getConnection();
|
|
592
|
PreparedStatement stm = conn.prepareStatement("SELECT * FROM datasources d WHERE contactemail = ? OR optional1 = ?");
|
|
593
|
stm.setString(1, user_mail);
|
|
594
|
stm.setString(2, user_mail);
|
|
595
|
ResultSet rs = stm.executeQuery();
|
|
596
|
|
|
597
|
while (rs.next()) {
|
|
598
|
repo = new Repository();
|
|
599
|
repo.setId(rs.getString("id"));
|
|
600
|
repo.setOfficialName(rs.getString("officialname"));
|
|
601
|
retRepos.add(repo);
|
|
602
|
}
|
|
603
|
rs.close();
|
|
604
|
stm.close();
|
|
605
|
} catch (Exception e) {
|
|
606
|
logger.error("error getting repositories registered by user: " + user_mail + " from openaire db", e);
|
|
607
|
} finally {
|
|
608
|
try {
|
|
609
|
if (conn != null)
|
|
610
|
conn.close();
|
|
611
|
} catch (Exception e) {
|
|
612
|
logger.warn("could not close openaire db connection", e);
|
|
613
|
}
|
|
614
|
}
|
|
615
|
return retRepos;
|
|
616
|
|
|
617
|
}
|
|
618
|
|
|
619
|
@Override
|
|
620
|
public List<String> getUrlsOfRepos(String user_mail) throws SQLException {
|
|
621
|
Connection conn = null;
|
|
622
|
List<String> urls = new ArrayList<String>();
|
|
623
|
try {
|
|
624
|
logger.debug("getting url from repositories registered by user: " + user_mail + " from openaire db");
|
|
625
|
|
|
626
|
conn = openAireDataSource.getConnection();
|
|
627
|
PreparedStatement stm = conn.prepareStatement("SELECT a.original, a.edited FROM datasources d, api a WHERE a.datasource=d.id AND ( d.optional1=? OR d.contactemail=?)");
|
|
628
|
stm.setString(1, user_mail);
|
|
629
|
stm.setString(2, user_mail);
|
|
630
|
ResultSet rs = stm.executeQuery();
|
|
631
|
|
|
632
|
while (rs.next()) {
|
|
633
|
if (rs.getString(1) != null && !rs.getString(1).isEmpty() && !urls.contains(rs.getString(1)))
|
|
634
|
urls.add(rs.getString(1));
|
|
635
|
if (rs.getString(2) != null && !rs.getString(2).isEmpty() && !urls.contains(rs.getString(2)))
|
|
636
|
urls.add(rs.getString(2));
|
|
637
|
}
|
|
638
|
rs.close();
|
|
639
|
stm.close();
|
|
640
|
} catch (Exception e) {
|
|
641
|
logger.error("error getting url from repositories registered by user: " + user_mail + " from openaire db", e);
|
|
642
|
} finally {
|
|
643
|
try {
|
|
644
|
if (conn != null)
|
|
645
|
conn.close();
|
|
646
|
} catch (Exception e) {
|
|
647
|
logger.warn("could not close openaire db connection", e);
|
|
648
|
}
|
|
649
|
}
|
|
650
|
return urls;
|
|
651
|
|
|
652
|
}
|
|
653
|
|
|
654
|
|
|
655
|
|
|
656
|
|
|
657
|
@Override
|
|
658
|
public boolean repoIsCompliant(String officialName) throws SQLException {
|
|
659
|
boolean retCompliant = false;
|
|
660
|
Connection conn = null;
|
|
661
|
try {
|
|
662
|
conn = openAireDataSource.getConnection();
|
|
663
|
PreparedStatement stm = conn.prepareStatement("SELECT openairecompatibilityclass FROM datasources WHERE officialname = ?");
|
|
664
|
|
|
665
|
stm.setString(1, officialName);
|
|
666
|
ResultSet rs = stm.executeQuery();
|
|
667
|
if(rs.next()) {
|
|
668
|
if (rs.getString(1).equals("UNKNOWN") || rs.getString(1).equals("notCompatible")) {
|
|
669
|
retCompliant = false;
|
|
670
|
} else {
|
|
671
|
retCompliant = true;
|
|
672
|
}
|
|
673
|
}
|
|
674
|
|
|
675
|
|
|
676
|
stm.close();
|
|
677
|
|
|
678
|
rs.close();
|
|
679
|
logger.debug(officialName + " set as openaire compliant");
|
|
680
|
} catch (Exception e) {
|
|
681
|
logger.error("error connecting to openaire db to get openairecompliant for " + officialName, e);
|
|
682
|
|
|
683
|
} finally {
|
|
684
|
try {
|
|
685
|
if (conn != null)
|
|
686
|
conn.close();
|
|
687
|
} catch (Exception e) {
|
|
688
|
logger.warn("could not close openaire db connection", e);
|
|
689
|
}
|
|
690
|
}
|
|
691
|
return retCompliant;
|
|
692
|
|
|
693
|
}
|
|
694
|
|
|
695
|
@Override
|
|
696
|
public Map<String, String> getRepoCompatibility(String officialName, String datasourceId) throws Exception {
|
|
697
|
Map<String, String> compMap = null;
|
|
698
|
Connection conn = null;
|
|
699
|
|
|
700
|
try {
|
|
701
|
logger.debug("getting repository " + officialName + " compatibility from openaire db");
|
|
702
|
|
|
703
|
conn = openAireDataSource.getConnection();
|
|
704
|
PreparedStatement stm = null;
|
|
705
|
|
|
706
|
stm = conn.prepareStatement("SELECT openairecompatibilityclass FROM datasources d WHERE d.id = ?");
|
|
707
|
stm.setString(1, datasourceId);
|
|
708
|
ResultSet rs = stm.executeQuery();
|
|
709
|
|
|
710
|
compMap = new HashMap<String, String>();
|
|
711
|
if (rs.next()) {
|
|
712
|
String[] comp = rs.getString("openairecompatibilityclass").split("-");
|
|
713
|
for ( String c : comp) {
|
|
714
|
if (c.equalsIgnoreCase("driver"))
|
|
715
|
compMap.put("driver", "driver");
|
|
716
|
else if (c.equalsIgnoreCase("openaire2.0"))
|
|
717
|
compMap.put("openaire2.0", "ec_fundedresources");
|
|
718
|
else if (c.equalsIgnoreCase("openaire3.0")) {
|
|
719
|
compMap.put("openaire3.0", "openaire");
|
|
720
|
compMap.put("openaire3.0_data", "openaire_data");
|
|
721
|
}
|
|
722
|
else if (c.equalsIgnoreCase("notCompatible"))
|
|
723
|
compMap.put("notCompatible", "notCompatible");
|
|
724
|
else if (c.equalsIgnoreCase("UNKNOWN"))
|
|
725
|
compMap.put("UNKNOWN", "UNKNOWN");
|
|
726
|
}
|
|
727
|
}
|
|
728
|
|
|
729
|
rs.close();
|
|
730
|
stm.close();
|
|
731
|
|
|
732
|
} catch (SQLException e) {
|
|
733
|
logger.error("Error getting repo " + officialName + " compatibility from openaire db", e);
|
|
734
|
throw e;
|
|
735
|
}
|
|
736
|
finally {
|
|
737
|
if (conn != null)
|
|
738
|
try {
|
|
739
|
conn.close();
|
|
740
|
} catch (SQLException e) {
|
|
741
|
logger.error("Error closing connection", e);
|
|
742
|
}
|
|
743
|
}
|
|
744
|
return compMap;
|
|
745
|
}
|
|
746
|
|
|
747
|
|
|
748
|
@Override
|
|
749
|
public String editRepository(Repository repo, String officialNameOld, String idOld, String datatype) throws Exception {
|
|
750
|
String retMessage = null;
|
|
751
|
Connection conn = openAireDataSource.getConnection();
|
|
752
|
PreparedStatement stm = null;
|
|
753
|
ResultSet rs = null;
|
|
754
|
|
|
755
|
logger.debug("editing " + datatype + " repository..");
|
|
756
|
if (datatype.equalsIgnoreCase("opendoar")) {
|
|
757
|
|
|
758
|
logger.debug("updating datasources values for id:"+repo.getId()+" + name:" + repo.getOfficialName() );
|
|
759
|
|
|
760
|
|
|
761
|
stm = conn.prepareStatement("UPDATE datasources SET englishname = ?, logourl = ?, timezone = ? WHERE officialname = ? AND id = ?");
|
|
762
|
stm.setString(1, repo.getEnglishName());
|
|
763
|
stm.setString(2, repo.getLogoUrl());
|
|
764
|
stm.setDouble(3, repo.getTimezone());
|
|
765
|
stm.setString(4, repo.getOfficialName());
|
|
766
|
stm.setString(5, repo.getId());
|
|
767
|
|
|
768
|
if (stm.executeUpdate() > 0 ) {
|
|
769
|
logger.debug("finished updating values in datasources..");
|
|
770
|
stm.close();
|
|
771
|
conn.commit();
|
|
772
|
}
|
|
773
|
|
|
774
|
logger.debug("checking current values in api..");
|
|
775
|
|
|
776
|
stm = conn.prepareStatement("SELECT COUNT(*) FROM api WHERE datasource = ?");
|
|
777
|
stm.setString(1, repo.getId());
|
|
778
|
rs = stm.executeQuery();
|
|
779
|
int noCurrentInApi = 0;
|
|
780
|
if (rs.next()) {
|
|
781
|
noCurrentInApi = rs.getInt(1);
|
|
782
|
}
|
|
783
|
stm.close();
|
|
784
|
rs.close();
|
|
785
|
|
|
786
|
|
|
787
|
for (RepositoryInterface iFace : repo.getInterfaces()) {
|
|
788
|
logger.debug("checking if interface : " + iFace.getId() + " already exists in api..");
|
|
789
|
stm = conn.prepareStatement("SELECT * FROM api WHERE datasource = ? AND id = ?");
|
|
790
|
stm.setString(1, repo.getId());
|
|
791
|
stm.setString(2, iFace.getId());
|
|
792
|
rs = stm.executeQuery();
|
|
793
|
|
|
794
|
if (!rs.next()) {
|
|
795
|
logger.debug("not exist..");
|
|
796
|
stm.close();
|
|
797
|
rs.close();
|
|
798
|
|
|
799
|
stm = conn.prepareStatement("INSERT INTO api (id, typology, originalprotocolclass, original, datasource, _dnet_resource_identifier_) VALUES (?,?,?,?,?,?)");
|
|
800
|
iFace.setId("api_________::" + repo.getId() + "::" + noCurrentInApi);
|
|
801
|
logger.debug("creating new api_id: " + iFace.getId());
|
|
802
|
noCurrentInApi++;
|
|
803
|
|
|
804
|
String apiTypology = "UNKNOWN";
|
|
805
|
if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire2.0")) {
|
|
806
|
apiTypology = "openaire";
|
|
807
|
} else if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("driver")) {
|
|
808
|
apiTypology = "driver";
|
|
809
|
}
|
|
810
|
|
|
811
|
stm.setString(1, iFace.getId());
|
|
812
|
stm.setString(2, apiTypology);
|
|
813
|
stm.setString(3, iFace.getAccessProtocol());
|
|
814
|
stm.setString(4, iFace.getBaseUrl());
|
|
815
|
stm.setString(5, repo.getId());
|
|
816
|
stm.setString(6, iFace.getId());
|
|
817
|
|
|
818
|
if (stm.executeUpdate() > 0) {
|
|
819
|
logger.debug(iFace.getId() + " inserted in api..");
|
|
820
|
logger.debug("now inserting in apicollections..");
|
|
821
|
stm.close();
|
|
822
|
rs.close();
|
|
823
|
conn.commit();
|
|
824
|
|
|
825
|
stm = conn.prepareStatement("INSERT INTO apicollections (accessparam, accessvalue, api, _dnet_resource_identifier_) VALUES (?,?,?,?)");
|
|
826
|
|
|
827
|
stm.setString(1,"FORMAT");
|
|
828
|
stm.setString(2, iFace.getAccessFormat());
|
|
829
|
stm.setString(3, iFace.getId());
|
|
830
|
stm.setString(4,"FORMAT" + "@@" + iFace.getAccessFormat() + "@@" + iFace.getId());
|
|
831
|
|
|
832
|
stm.addBatch();
|
|
833
|
|
|
834
|
stm.setString(1,"SET");
|
|
835
|
stm.setString(2, iFace.getAccessSet());
|
|
836
|
stm.setString(3, iFace.getId());
|
|
837
|
stm.setString(4,"SET" + "@@" + iFace.getAccessSet() + "@@" + iFace.getId());
|
|
838
|
|
|
839
|
stm.addBatch();
|
|
840
|
|
|
841
|
if (stm.executeBatch()[0] > 0) {
|
|
842
|
logger.debug(iFace.getId() + " inserted in apicollections.");
|
|
843
|
}
|
|
844
|
logger.debug("finished updating set + format values in apicollections.");
|
|
845
|
stm.close();
|
|
846
|
conn.commit();
|
|
847
|
}
|
|
848
|
|
|
849
|
} else {
|
|
850
|
|
|
851
|
logger.debug("exists..");
|
|
852
|
boolean edited = false;
|
|
853
|
if( rs.getString("original") == null || rs.getString("originalprotocolclass") == null || !rs.getString("original").equalsIgnoreCase(iFace.getBaseUrl()) || !rs.getString("originalprotocolclass").equalsIgnoreCase(iFace.getAccessProtocol()) ) {
|
|
854
|
edited = true;
|
|
855
|
}
|
|
856
|
logger.debug("updating edited values in api..");
|
|
857
|
stm.close();
|
|
858
|
rs.close();
|
|
859
|
|
|
860
|
String apiTypology = "UNKNOWN";
|
|
861
|
if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire2.0")) {
|
|
862
|
apiTypology = "openaire";
|
|
863
|
} else if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("driver")) {
|
|
864
|
apiTypology = "driver";
|
|
865
|
}
|
|
866
|
|
|
867
|
|
|
868
|
stm = conn.prepareStatement("UPDATE api SET typology = ?, edited = ?, editedprotocolclass = ?, useedited = ? WHERE datasource = ? AND id = ? ");
|
|
869
|
stm.setString(1, apiTypology);
|
|
870
|
if (edited) {
|
|
871
|
stm.setString(2, iFace.getBaseUrl());
|
|
872
|
stm.setString(3, iFace.getAccessProtocol());
|
|
873
|
stm.setBoolean(4, true);
|
|
874
|
} else {
|
|
875
|
stm.setString(2, null);
|
|
876
|
stm.setString(3, null);
|
|
877
|
stm.setBoolean(4, false);
|
|
878
|
}
|
|
879
|
stm.setString(5, repo.getId());
|
|
880
|
stm.setString(6, iFace.getId());
|
|
881
|
|
|
882
|
if (stm.executeUpdate() > 0 ) {
|
|
883
|
logger.debug("finished updating values in api..");
|
|
884
|
stm.close();
|
|
885
|
conn.commit();
|
|
886
|
}
|
|
887
|
logger.debug("updating apicollections..");
|
|
888
|
|
|
889
|
logger.debug("deleting current values from apicollections..");
|
|
890
|
stm = conn.prepareStatement("DELETE FROM apicollections WHERE api = ?");
|
|
891
|
|
|
892
|
stm.setString(1, iFace.getId());
|
|
893
|
|
|
894
|
if (stm.executeUpdate() > 0) {
|
|
895
|
logger.debug("values for interface " + iFace.getId() + " deleted from api_collections..");
|
|
896
|
stm.close();
|
|
897
|
rs.close();
|
|
898
|
conn.commit();
|
|
899
|
|
|
900
|
}
|
|
901
|
logger.debug("now inserting in apicollections..");
|
|
902
|
|
|
903
|
stm = conn.prepareStatement("INSERT INTO apicollections (accessparam, accessvalue, api, _dnet_resource_identifier_) VALUES (?,?,?,?)");
|
|
904
|
|
|
905
|
stm.setString(1,"FORMAT");
|
|
906
|
stm.setString(2, iFace.getAccessFormat());
|
|
907
|
stm.setString(3, iFace.getId());
|
|
908
|
stm.setString(4,"FORMAT" + "@@" + iFace.getAccessFormat() + "@@" + iFace.getId());
|
|
909
|
|
|
910
|
stm.addBatch();
|
|
911
|
|
|
912
|
stm.setString(1,"SET");
|
|
913
|
stm.setString(2, iFace.getAccessSet());
|
|
914
|
stm.setString(3, iFace.getId());
|
|
915
|
stm.setString(4,"SET" + "@@" + iFace.getAccessSet() + "@@" + iFace.getId());
|
|
916
|
|
|
917
|
stm.addBatch();
|
|
918
|
|
|
919
|
if (stm.executeBatch()[0] > 0) {
|
|
920
|
logger.debug(iFace.getId() + " inserted in apicollections.");
|
|
921
|
}
|
|
922
|
logger.debug("finished updating set + format values in apicollections.");
|
|
923
|
stm.close();
|
|
924
|
conn.commit();
|
|
925
|
|
|
926
|
}
|
|
927
|
logger.debug("interface : " + iFace.getId() + " inserted successfully..");
|
|
928
|
}
|
|
929
|
|
|
930
|
} else if (datatype.equalsIgnoreCase("journal")||datatype.equalsIgnoreCase("aggregator")){
|
|
931
|
|
|
932
|
try {
|
|
933
|
stm = conn.prepareStatement("UPDATE datasources SET id = ?, officialname = ?, englishname = ?, websiteurl = ?, logourl = ?, contactemail = ?, latitude = ?, longitude = ?, timezone = ?, namespaceprefix = ?, collectedfrom = ?, typology = ?, datasourceclass = ?, provenanceactionclass = ?, _dnet_resource_identifier_ = ? WHERE officialname = ? AND id = ?");
|
|
934
|
|
|
935
|
stm.setString(1, repo.getId()); //activation id
|
|
936
|
stm.setString(2, repo.getOfficialName());
|
|
937
|
stm.setString(3, repo.getEnglishName());
|
|
938
|
stm.setString(4, repo.getWebsiteUrl());
|
|
939
|
stm.setString(5, repo.getLogoUrl());
|
|
940
|
stm.setString(6, repo.getContactEmail());
|
|
941
|
stm.setDouble(7, repo.getLatitude());
|
|
942
|
stm.setDouble(8, repo.getLongitude());
|
|
943
|
stm.setString(9, repo.getTimezone() + "");
|
|
944
|
stm.setString(10, repo.getNamespacePrefix());
|
|
945
|
stm.setString(11, repo.getCollectedFrom());
|
|
946
|
stm.setString(12, repo.getTypology());
|
|
947
|
stm.setString(13, repo.getDatasourceClass());
|
|
948
|
stm.setString(14, repo.getProvenanceActionClass());
|
|
949
|
stm.setString(15,repo.getId());
|
|
950
|
stm.setString(16,officialNameOld);
|
|
951
|
stm.setString(17,idOld);
|
|
952
|
|
|
953
|
|
|
954
|
stm.executeUpdate();
|
|
955
|
logger.debug(datatype + " " + repo.getOfficialName() + " inserted in datasources.");
|
|
956
|
stm.close();
|
|
957
|
conn.commit();
|
|
958
|
|
|
959
|
logger.debug("checking current values in api..");
|
|
960
|
|
|
961
|
stm = conn.prepareStatement("SELECT COUNT(*) FROM api WHERE datasource = ?");
|
|
962
|
stm.setString(1, repo.getId());
|
|
963
|
rs = stm.executeQuery();
|
|
964
|
int noCurrentInApi = 0;
|
|
965
|
if (rs.next()) {
|
|
966
|
noCurrentInApi = rs.getInt(1);
|
|
967
|
}
|
|
968
|
stm.close();
|
|
969
|
rs.close();
|
|
970
|
|
|
971
|
|
|
972
|
for (RepositoryInterface iFace : repo.getInterfaces()) {
|
|
973
|
logger.debug("checking if interface : " + iFace.getId() + " already exists in api..");
|
|
974
|
stm = conn.prepareStatement("SELECT * FROM api WHERE datasource = ? AND id = ?");
|
|
975
|
stm.setString(1, repo.getId());
|
|
976
|
stm.setString(2, iFace.getId());
|
|
977
|
rs = stm.executeQuery();
|
|
978
|
|
|
979
|
if (!rs.next()) {
|
|
980
|
logger.debug("not exist..");
|
|
981
|
stm.close();
|
|
982
|
rs.close();
|
|
983
|
|
|
984
|
stm = conn.prepareStatement("INSERT INTO api (id, typology, originalprotocolclass, original, datasource, _dnet_resource_identifier_) VALUES (?,?,?,?,?,?)");
|
|
985
|
iFace.setId("api_________::" + repo.getId() + "::" + noCurrentInApi);
|
|
986
|
logger.debug("creating new api_id: " + iFace.getId());
|
|
987
|
noCurrentInApi++;
|
|
988
|
|
|
989
|
String apiTypology = "UNKNOWN";
|
|
990
|
if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire2.0")) {
|
|
991
|
apiTypology = "openaire";
|
|
992
|
} else if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("driver")) {
|
|
993
|
apiTypology = "driver";
|
|
994
|
}
|
|
995
|
stm.setString(1, iFace.getId());
|
|
996
|
stm.setString(2, apiTypology);
|
|
997
|
stm.setString(3, iFace.getAccessProtocol());
|
|
998
|
stm.setString(4, iFace.getBaseUrl());
|
|
999
|
stm.setString(5, repo.getId());
|
|
1000
|
stm.setString(6, iFace.getId());
|
|
1001
|
|
|
1002
|
if (stm.executeUpdate() > 0) {
|
|
1003
|
logger.debug(iFace.getId() + " inserted in api..");
|
|
1004
|
logger.debug("now inserting in apicollections..");
|
|
1005
|
stm.close();
|
|
1006
|
rs.close();
|
|
1007
|
conn.commit();
|
|
1008
|
|
|
1009
|
stm = conn.prepareStatement("INSERT INTO apicollections (accessparam, accessvalue, api, _dnet_resource_identifier_) VALUES (?,?,?,?)");
|
|
1010
|
|
|
1011
|
stm.setString(1,"FORMAT");
|
|
1012
|
stm.setString(2, iFace.getAccessFormat());
|
|
1013
|
stm.setString(3, iFace.getId());
|
|
1014
|
stm.setString(4,"FORMAT" + "@@" + iFace.getAccessFormat() + "@@" + iFace.getId());
|
|
1015
|
|
|
1016
|
stm.addBatch();
|
|
1017
|
|
|
1018
|
stm.setString(1,"SET");
|
|
1019
|
stm.setString(2, iFace.getAccessSet());
|
|
1020
|
stm.setString(3, iFace.getId());
|
|
1021
|
stm.setString(4,"SET" + "@@" + iFace.getAccessSet() + "@@" + iFace.getId());
|
|
1022
|
|
|
1023
|
stm.addBatch();
|
|
1024
|
|
|
1025
|
if (stm.executeBatch()[0] > 0) {
|
|
1026
|
logger.debug(iFace.getId() + " inserted in apicollections.");
|
|
1027
|
}
|
|
1028
|
logger.debug("finished updating set + format values in apicollections.");
|
|
1029
|
stm.close();
|
|
1030
|
conn.commit();
|
|
1031
|
}
|
|
1032
|
|
|
1033
|
} else {
|
|
1034
|
|
|
1035
|
logger.debug("exists..");
|
|
1036
|
boolean edited = false;
|
|
1037
|
if( rs.getString("original") == null || rs.getString("originalprotocolclass") == null || !rs.getString("original").equalsIgnoreCase(iFace.getBaseUrl()) || !rs.getString("originalprotocolclass").equalsIgnoreCase(iFace.getAccessProtocol()) ) {
|
|
1038
|
edited = true;
|
|
1039
|
}
|
|
1040
|
logger.debug("updating edited values in api..");
|
|
1041
|
stm.close();
|
|
1042
|
rs.close();
|
|
1043
|
|
|
1044
|
String apiTypology = "UNKNOWN";
|
|
1045
|
if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire3.0") || iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("openaire2.0")) {
|
|
1046
|
apiTypology = "openaire";
|
|
1047
|
} else if (iFace.getDesiredCompatibilityLevel().equalsIgnoreCase("driver")) {
|
|
1048
|
apiTypology = "driver";
|
|
1049
|
}
|
|
1050
|
|
|
1051
|
|
|
1052
|
stm = conn.prepareStatement("UPDATE api SET typology = ?, edited = ?, editedprotocolclass = ?, useedited = ? WHERE datasource = ? AND id = ? ");
|
|
1053
|
stm.setString(1, apiTypology);
|
|
1054
|
if (edited) {
|
|
1055
|
stm.setString(2, iFace.getBaseUrl());
|
|
1056
|
stm.setString(3, iFace.getAccessProtocol());
|
|
1057
|
stm.setBoolean(4, true);
|
|
1058
|
} else {
|
|
1059
|
stm.setString(2, null);
|
|
1060
|
stm.setString(3, null);
|
|
1061
|
stm.setBoolean(4, false);
|
|
1062
|
}
|
|
1063
|
stm.setString(5, repo.getId());
|
|
1064
|
stm.setString(6, iFace.getId());
|
|
1065
|
|
|
1066
|
if (stm.executeUpdate() > 0 ) {
|
|
1067
|
logger.debug("finished updating values in api..");
|
|
1068
|
stm.close();
|
|
1069
|
conn.commit();
|
|
1070
|
}
|
|
1071
|
logger.debug("updating apicollections..");
|
|
1072
|
|
|
1073
|
logger.debug("deleting current values from apicollections..");
|
|
1074
|
stm = conn.prepareStatement("DELETE FROM apicollections WHERE api = ?");
|
|
1075
|
|
|
1076
|
stm.setString(1, iFace.getId());
|
|
1077
|
|
|
1078
|
if (stm.executeUpdate() > 0) {
|
|
1079
|
logger.debug("values for interface " + iFace.getId() + " deleted from api_collections..");
|
|
1080
|
stm.close();
|
|
1081
|
rs.close();
|
|
1082
|
conn.commit();
|
|
1083
|
|
|
1084
|
}
|
|
1085
|
logger.debug("now inserting in apicollections..");
|
|
1086
|
|
|
1087
|
stm = conn.prepareStatement("INSERT INTO apicollections (accessparam, accessvalue, api, _dnet_resource_identifier_) VALUES (?,?,?,?)");
|
|
1088
|
|
|
1089
|
stm.setString(1,"FORMAT");
|
|
1090
|
stm.setString(2, iFace.getAccessFormat());
|
|
1091
|
stm.setString(3, iFace.getId());
|
|
1092
|
stm.setString(4,"FORMAT" + "@@" + iFace.getAccessFormat() + "@@" + iFace.getId());
|
|
1093
|
|
|
1094
|
stm.addBatch();
|
|
1095
|
|
|
1096
|
stm.setString(1,"SET");
|
|
1097
|
stm.setString(2, iFace.getAccessSet());
|
|
1098
|
stm.setString(3, iFace.getId());
|
|
1099
|
stm.setString(4,"SET" + "@@" + iFace.getAccessSet() + "@@" + iFace.getId());
|
|
1100
|
|
|
1101
|
stm.addBatch();
|
|
1102
|
|
|
1103
|
if (stm.executeBatch()[0] > 0) {
|
|
1104
|
logger.debug(iFace.getId() + " inserted in apicollections.");
|
|
1105
|
}
|
|
1106
|
logger.debug("finished updating set + format values in apicollections.");
|
|
1107
|
stm.close();
|
|
1108
|
conn.commit();
|
|
1109
|
|
|
1110
|
}
|
|
1111
|
logger.debug("interface : " + iFace.getId() + " inserted successfully..");
|
|
1112
|
}
|
|
1113
|
|
|
1114
|
logger.debug("inserting in organizations..");
|
|
1115
|
stm.close();
|
|
1116
|
conn.commit();
|
|
1117
|
|
|
1118
|
stm = conn.prepareStatement("SELECT * FROM organizations WHERE id = ?");
|
|
1119
|
stm.setString(1, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
1120
|
|
|
1121
|
ResultSet rs1 = stm.executeQuery();
|
|
1122
|
boolean exists = rs1.next();
|
|
1123
|
|
|
1124
|
rs1.close();
|
|
1125
|
|
|
1126
|
if(!exists) {
|
|
1127
|
|
|
1128
|
stm = conn.prepareStatement("SELECT code FROM class WHERE name = ?");
|
|
1129
|
stm.setString(1,repo.getCountryName());
|
|
1130
|
|
|
1131
|
rs1 = stm.executeQuery();
|
|
1132
|
|
|
1133
|
String countryCode = "UNKNOWN";
|
|
1134
|
if ( rs1.next()) {
|
|
1135
|
countryCode = rs1.getString(1);
|
|
1136
|
stm.close();
|
|
1137
|
}
|
|
1138
|
stm = conn.prepareStatement("INSERT INTO organizations (legalname, countryclass, id, legalshortname, _dnet_resource_identifier_) VALUES (?,?,?,?,?)");
|
|
1139
|
stm.setString(1, repo.getOrganization());
|
|
1140
|
stm.setString(2, countryCode);
|
|
1141
|
stm.setString(3, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
1142
|
stm.setString(4, repo.getOrganization());
|
|
1143
|
stm.setString(5, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
1144
|
stm.executeUpdate();
|
|
1145
|
logger.debug("organization" + "openaire____::" + Base64.encode(repo.getOrganization()) + " inserted in organizations.");
|
|
1146
|
|
|
1147
|
stm.close();
|
|
1148
|
conn.commit();
|
|
1149
|
} else {
|
|
1150
|
logger.debug("Organization "+repo.getOrganization()+" already exists");
|
|
1151
|
}
|
|
1152
|
|
|
1153
|
logger.debug("inserting in datasource-organizations..");
|
|
1154
|
stm = conn.prepareStatement("UPDATE datasource_organization SET organization = ? , datasource = ? , _dnet_resource_identifier_ = ? WHERE datasource = ? ");
|
|
1155
|
stm.setString(1, "openaire____::" + Base64.encode(repo.getOrganization()));
|
|
1156
|
stm.setString(2, repo.getId());
|
|
1157
|
stm.setString(3, repo.getId() + "@@" + "openaire____::" + Base64.encode(repo.getOrganization()) );
|
|
1158
|
stm.setString(4, idOld);
|
|
1159
|
|
|
1160
|
if( stm.executeUpdate()>0) {
|
|
1161
|
logger.debug("organization" + "openaire____::" + Base64.encode(repo.getOrganization()) + " inserted in datasource-organizations.");
|
|
1162
|
stm.close();
|
|
1163
|
|
|
1164
|
conn.commit();
|
|
1165
|
}
|
|
1166
|
|
|
1167
|
logger.debug("Finished updating " + datatype + " repository..");
|
|
1168
|
|
|
1169
|
} catch (SQLException e) {
|
|
1170
|
logger.error("Error updating repo " + repo.getOfficialName() + " from openaire db", e);
|
|
1171
|
throw e;
|
|
1172
|
} finally {
|
|
1173
|
if (conn != null)
|
|
1174
|
try {
|
|
1175
|
conn.close();
|
|
1176
|
} catch (SQLException e) {
|
|
1177
|
logger.error("Error closing connection", e);
|
|
1178
|
}
|
|
1179
|
}
|
|
1180
|
}
|
|
1181
|
return retMessage;
|
|
1182
|
|
|
1183
|
}
|
|
1184
|
|
|
1185
|
@Override
|
|
1186
|
public boolean updateRepositoryInterfaceCompliance(String officialName, String datasourceId,
|
|
1187
|
String interfaceId, String compliance) throws Exception {
|
|
1188
|
boolean ret = true;
|
|
1189
|
Connection conn = null;
|
|
1190
|
try {
|
|
1191
|
|
|
1192
|
logger.debug("updating repository " + officialName + " compliance to : " + compliance);
|
|
1193
|
conn = openAireDataSource.getConnection();
|
|
1194
|
PreparedStatement stm = conn.prepareStatement("UPDATE datasources SET openairecompatibilityclass=?, dateofvalidation=?, activationid = ? , openairecompatibilityscheme = ? WHERE id = ?");
|
|
1195
|
|
|
1196
|
java.util.Date utilDate = new java.util.Date();
|
|
1197
|
java.sql.Timestamp date = new java.sql.Timestamp(utilDate.getTime());
|
|
1198
|
Map<String, String> compMap = this.getRepoCompatibility(officialName, datasourceId);
|
|
1199
|
|
|
1200
|
String newCompliance = "";
|
|
1201
|
if (compliance.equalsIgnoreCase("openaire2.0")) {
|
|
1202
|
if ( compMap.containsValue("driver") && compMap.containsValue("openaire") )
|
|
1203
|
newCompliance = "driver-openaire2.0-openaire3.0";
|
|
1204
|
else if ( compMap.containsValue("driver") )
|
|
1205
|
newCompliance = "driver-openaire2.0";
|
|
1206
|
else if ( compMap.containsValue("openaire") )
|
|
1207
|
newCompliance = "openaire2.0-openaire3.0";
|
|
1208
|
else
|
|
1209
|
newCompliance = "openaire2.0";
|
|
1210
|
} else if (compliance.equalsIgnoreCase("driver")) {
|
|
1211
|
if ( compMap.containsValue("ec_fundedresources") && compMap.containsValue("openaire") )
|
|
1212
|
newCompliance = "driver-openaire2.0-openaire3.0";
|
|
1213
|
else if ( compMap.containsValue("ec_fundedresources") )
|
|
1214
|
newCompliance = "driver-openaire2.0";
|
|
1215
|
else if ( compMap.containsValue("openaire") )
|
|
1216
|
newCompliance = "driver-openaire3.0";
|
|
1217
|
else
|
|
1218
|
newCompliance = "driver";
|
|
1219
|
} else if (compliance.equalsIgnoreCase("openaire3.0")) {
|
|
1220
|
if ( compMap.containsValue("ec_fundedresources") && compMap.containsValue("driver") )
|
|
1221
|
newCompliance = "driver-openaire2.0-openaire3.0";
|
|
1222
|
else if ( compMap.containsValue("ec_fundedresources") )
|
|
1223
|
newCompliance = "openaire2.0-openaire3.0";
|
|
1224
|
else if ( compMap.containsValue("driver") )
|
|
1225
|
newCompliance = "driver-openaire3.0";
|
|
1226
|
else
|
|
1227
|
newCompliance = "openaire3.0";
|
|
1228
|
} else if (compliance.equalsIgnoreCase("openaire3.0_data")) {
|
|
1229
|
newCompliance = "openaire3.0";
|
|
1230
|
} else if (compliance.equalsIgnoreCase("notCompatible")) {
|
|
1231
|
if ( compMap.containsValue("ec_fundedresources") && compMap.containsValue("driver") && compMap.containsValue("openaire"))
|
|
1232
|
newCompliance = "driver-openaire2.0-openaire3.0";
|
|
1233
|
else if ( compMap.containsValue("ec_fundedresources") && compMap.containsValue("driver") )
|
|
1234
|
newCompliance = "driver-openaire2.0";
|
|
1235
|
else if ( compMap.containsValue("openaire") )
|
|
1236
|
newCompliance = "openaire3.0";
|
|
1237
|
else if ( compMap.containsValue("ec_fundedresources") )
|
|
1238
|
newCompliance = "openaire2.0";
|
|
1239
|
else if ( compMap.containsValue("driver") )
|
|
1240
|
newCompliance = "driver";
|
|
1241
|
else
|
|
1242
|
newCompliance = "notCompatible";
|
|
1243
|
}
|
|
1244
|
|
|
1245
|
stm.setString(1, newCompliance);
|
|
1246
|
stm.setTimestamp(2,date);
|
|
1247
|
stm.setString(3, null);
|
|
1248
|
stm.setString(4, "dnet:compatibilityLevel");
|
|
1249
|
stm.setString(5, datasourceId);
|
|
1250
|
|
|
1251
|
stm.executeUpdate();
|
|
1252
|
stm.close();
|
|
1253
|
conn.commit();
|
|
1254
|
logger.debug(officialName + " set as openaire compliant: " + compliance);
|
|
1255
|
} catch (SQLException e) {
|
|
1256
|
logger.error("error connecting to openaire db to set a repo as openaire compliant " + officialName, e);
|
|
1257
|
ret = false;
|
|
1258
|
throw e;
|
|
1259
|
}
|
|
1260
|
finally {
|
|
1261
|
if (conn != null)
|
|
1262
|
try {
|
|
1263
|
conn.close();
|
|
1264
|
} catch (SQLException e) {
|
|
1265
|
ret = false;
|
|
1266
|
logger.error("Error closing connection", e);
|
|
1267
|
}
|
|
1268
|
}
|
|
1269
|
return ret;
|
|
1270
|
}
|
|
1271
|
|
|
1272
|
@Override
|
|
1273
|
public boolean insertPubFileInterface(String dsId, RepositoryInterface iFace)
|
|
1274
|
throws Exception {
|
|
1275
|
// TODO Auto-generated method stub
|
|
1276
|
return false;
|
|
1277
|
}
|
|
1278
|
|
|
1279
|
@Override
|
|
1280
|
public List<Repository> getRepositories(String collectedFrom)
|
|
1281
|
throws Exception {
|
|
1282
|
// TODO Auto-generated method stub
|
|
1283
|
return null;
|
|
1284
|
}
|
|
1285
|
}
|