D-Net

<workflow-app xmlns="uri:oozie:workflow:0.4" name="ingest_pmc_citations">

    <parameters>

        <property>

            <name>input_document_nlm</name>

            <description>input document text with NLMs</description>

        </property>

        <property>

            <name>input_dedup_map</name>

            <description>mapping between original OpenAire IDs and deduplicated documents' IDs</description>

        </property>

        <property>

            <name>input_pmid_to_oaid</name>

            <description>pmid to oaid mappings</description>

        </property>

        <property>

            <name>input_doi_to_oaid</name>

            <description>doi to oaid mappings</description>

        </property>

        <property>

            <name>output_citation</name>

            <description>extracted citations</description>

        </property>

        <property>

            <name>reduce_tasks</name>

            <value>2</value>

        </property>

    </parameters>

    <start to="ingest"/>

    <action name="ingest">

        <java>

            <job-tracker>${jobTracker}</job-tracker>

            <name-node>${nameNode}</name-node>

            <!-- The data generated by this node is deleted in this section -->

            <prepare>

                <delete path="${nameNode}${output_citation}"/>

            </prepare>

            <configuration>

                <property>

                    <name>mapred.job.queue.name</name>

                    <value>${queueName}</value>

                </property>

            </configuration>

            <main-class>eu.dnetlib.iis.ingest.pmc.citations.ResolvedCitationsImporter</main-class>

            <java-opts>-Dmapred.reduce.tasks=${reduce_tasks}</java-opts>

            <arg>${nameNode}${input_document_nlm}</arg>

            <arg>${nameNode}${input_dedup_map}</arg>

            <arg>${nameNode}${input_pmid_to_oaid}</arg>

            <arg>${nameNode}${input_doi_to_oaid}</arg>

            <arg>${nameNode}${output_citation}</arg>

        </java>

        <ok to="end"/>

        <error to="fail"/>

    </action>

    <kill name="fail">

        <message>Unfortunately, the process failed -- error message: [${wf:errorMessage(wf:lastErrorNode())}]</message>

    </kill>

    <end name="end"/>

</workflow-app>