| 1 |
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|
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|
<workflow-app name="test-core_examples_javamapreduce_stats" xmlns="uri:oozie:workflow:0.4">
|
| 2 |
|
|
<!-- map reduce job that exports hbase data and prepares them for import to the relation database used for statistics generation -->
|
| 3 |
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|
eri.katsar
|
|
| 4 |
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|
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|
<global>
|
| 5 |
|
|
<job-tracker>${jobTracker}</job-tracker>
|
| 6 |
|
|
<name-node>${nameNode}</name-node>
|
| 7 |
|
|
<configuration>
|
| 8 |
|
|
<property>
|
| 9 |
|
|
<name>mapred.job.queue.name</name>
|
| 10 |
|
|
<value>${queueName}</value>
|
| 11 |
|
|
</property>
|
| 12 |
29238
|
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|
<property>
|
| 13 |
|
|
<name>oozie.sqoop.log.level</name>
|
| 14 |
|
|
<value>DEBUG</value>
|
| 15 |
|
|
</property>
|
| 16 |
28523
|
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|
</configuration>
|
| 17 |
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|
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|
</global>
|
| 18 |
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|
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|
<start to='get-scanner' />
|
| 19 |
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|
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|
<action name='get-scanner'>
|
| 20 |
|
|
<java>
|
| 21 |
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|
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|
<main-class>eu.dnetlib.iis.core.workflows.stats.HbaseScannerGenerator
|
| 22 |
|
|
</main-class>
|
| 23 |
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|
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|
<!-- column families: -->
|
| 24 |
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|
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|
<arg>
|
| 25 |
|
|
-f
|
| 26 |
|
|
datasource ,
|
| 27 |
|
|
datasourceOrganization_provision_provides,
|
| 28 |
|
|
organization,
|
| 29 |
|
|
project,
|
| 30 |
|
|
projectOrganization_participation_hasParticipant,
|
| 31 |
|
|
result
|
| 32 |
|
|
, resultProject_outcome_produces,
|
| 33 |
31099
|
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|
<!-- personResult_authorship_hasAuthor, -->
|
| 34 |
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|
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|
resultResult_publicationDataset_isRelatedTo
|
| 35 |
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|
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|
</arg>
|
| 36 |
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|
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|
|
| 37 |
|
|
<capture-output />
|
| 38 |
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|
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|
</java>
|
| 39 |
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|
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|
<ok to="mr_export" />
|
| 40 |
|
|
<error to="fail" />
|
| 41 |
|
|
</action>
|
| 42 |
|
|
<action name="mr_export">
|
| 43 |
|
|
<map-reduce>
|
| 44 |
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|
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|
|
| 45 |
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|
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|
<prepare>
|
| 46 |
28565
|
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|
<delete path="${nameNode}${Stats_output_Path}" />
|
| 47 |
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|
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|
|
| 48 |
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|
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|
</prepare>
|
| 49 |
|
|
<configuration>
|
| 50 |
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|
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|
<property>
|
| 51 |
|
|
<name>hbase.mapreduce.scan</name>
|
| 52 |
|
|
<value>${wf:actionData('get-scanner')['scan']}</value>
|
| 53 |
|
|
</property>
|
| 54 |
28514
|
eri.katsar
|
<property>
|
| 55 |
|
|
<name>hbase.rootdir</name>
|
| 56 |
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|
eri.katsar
|
<!--<value>hdfs://nmis-hadoop-cluster/hbase</value> -->
|
| 57 |
|
|
<!-- <value>hdfs://dm-cluster-nn</value> -->
|
| 58 |
|
|
<value>$nameNode/hbase</value>
|
| 59 |
|
|
|
| 60 |
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|
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|
</property>
|
| 61 |
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|
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|
|
| 62 |
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|
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|
<property>
|
| 63 |
|
|
<name>hbase.security.authentication</name>
|
| 64 |
29238
|
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|
<value>simple</value>
|
| 65 |
28514
|
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|
</property>
|
| 66 |
28523
|
eri.katsar
|
<!-- ZOOKEEPER -->
|
| 67 |
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|
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|
|
| 68 |
28514
|
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|
<property>
|
| 69 |
|
|
<name>hbase.zookeeper.quorum</name>
|
| 70 |
31069
|
eri.katsar
|
<value>namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu </value>
|
| 71 |
|
|
<!-- <value> quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu </value> -->
|
| 72 |
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|
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|
</property>
|
| 73 |
|
|
<property>
|
| 74 |
|
|
<name>zookeeper.znode.rootserver</name>
|
| 75 |
31069
|
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|
<value>root-region-server</value>
|
| 76 |
|
|
|
| 77 |
28514
|
eri.katsar
|
</property>
|
| 78 |
29327
|
eri.katsar
|
|
| 79 |
28514
|
eri.katsar
|
<property>
|
| 80 |
|
|
<name>hbase.zookeeper.property.clientPort</name>
|
| 81 |
31069
|
eri.katsar
|
<value>2181</value>
|
| 82 |
|
|
<!--<value>2182</value> -->
|
| 83 |
28514
|
eri.katsar
|
</property>
|
| 84 |
29327
|
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|
|
| 85 |
|
|
|
| 86 |
28519
|
eri.katsar
|
<!-- MR IO -->
|
| 87 |
29327
|
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|
|
| 88 |
|
|
|
| 89 |
28514
|
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|
<property>
|
| 90 |
|
|
<name>mapreduce.inputformat.class</name>
|
| 91 |
|
|
<value>org.apache.hadoop.hbase.mapreduce.TableInputFormat</value>
|
| 92 |
|
|
</property>
|
| 93 |
29327
|
eri.katsar
|
|
| 94 |
28514
|
eri.katsar
|
<property>
|
| 95 |
|
|
<name>mapred.mapoutput.key.class</name>
|
| 96 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 97 |
|
|
</property>
|
| 98 |
|
|
<property>
|
| 99 |
|
|
<name>mapred.mapoutput.value.class</name>
|
| 100 |
|
|
<value>org.apache.hadoop.hbase.io.ImmutableBytesWritable</value>
|
| 101 |
|
|
</property>
|
| 102 |
|
|
<property>
|
| 103 |
|
|
<name>mapred.output.key.class</name>
|
| 104 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 105 |
|
|
</property>
|
| 106 |
|
|
<property>
|
| 107 |
|
|
<name>mapred.output.value.class</name>
|
| 108 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat
|
| 109 |
|
|
</value>
|
| 110 |
28514
|
eri.katsar
|
</property>
|
| 111 |
29327
|
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|
|
| 112 |
28514
|
eri.katsar
|
<!-- ## This is required for new MapReduce API usage -->
|
| 113 |
|
|
<property>
|
| 114 |
|
|
<name>mapred.mapper.new-api</name>
|
| 115 |
|
|
<value>true</value>
|
| 116 |
|
|
</property>
|
| 117 |
|
|
<property>
|
| 118 |
|
|
<name>mapred.reducer.new-api</name>
|
| 119 |
|
|
<value>true</value>
|
| 120 |
|
|
</property>
|
| 121 |
29327
|
eri.katsar
|
|
| 122 |
28514
|
eri.katsar
|
<!-- # Job-specific options -->
|
| 123 |
|
|
<property>
|
| 124 |
|
|
<name>dfs.blocksize</name>
|
| 125 |
|
|
<value>32M</value>
|
| 126 |
|
|
</property>
|
| 127 |
|
|
<property>
|
| 128 |
|
|
<name>mapred.output.compress</name>
|
| 129 |
|
|
<value>false</value>
|
| 130 |
|
|
</property>
|
| 131 |
|
|
<property>
|
| 132 |
|
|
<name>mapred.reduce.tasks.speculative.execution</name>
|
| 133 |
|
|
<value>false</value>
|
| 134 |
|
|
</property>
|
| 135 |
|
|
<property>
|
| 136 |
|
|
<name>mapred.reduce.tasks.speculative.execution</name>
|
| 137 |
|
|
<value>false</value>
|
| 138 |
|
|
</property>
|
| 139 |
|
|
<property>
|
| 140 |
|
|
<name>mapreduce.map.speculative</name>
|
| 141 |
|
|
<value>false</value>
|
| 142 |
|
|
</property>
|
| 143 |
29327
|
eri.katsar
|
|
| 144 |
28514
|
eri.katsar
|
<!-- I/O FORMAT -->
|
| 145 |
29365
|
eri.katsar
|
<!-- IMPORTANT: sets default delimeter used by text output writer. Required to fix issue with traling tab added between id and value in multiple outputs -->
|
| 146 |
29327
|
eri.katsar
|
<property>
|
| 147 |
29238
|
eri.katsar
|
<name>mapred.textoutputformat.separator</name>
|
| 148 |
|
|
<value>${Stats_delim_Character}</value>
|
| 149 |
|
|
</property>
|
| 150 |
28514
|
eri.katsar
|
<!-- ## Names of all output ports -->
|
| 151 |
29327
|
eri.katsar
|
|
| 152 |
28514
|
eri.katsar
|
<property>
|
| 153 |
28543
|
eri.katsar
|
<name>mapreduce.multipleoutputs</name>
|
| 154 |
29327
|
eri.katsar
|
|
| 155 |
29442
|
eri.katsar
|
<value>${out1} ${out2} ${out3} ${out4} ${out5} ${out6} ${out7} ${out8} ${out9} ${out10} ${out11} ${out12} ${out13} ${out14} ${out15} ${out16} ${out17} ${out18} ${out19} ${out20}
|
| 156 |
29327
|
eri.katsar
|
</value>
|
| 157 |
|
|
|
| 158 |
28539
|
eri.katsar
|
</property>
|
| 159 |
29238
|
eri.katsar
|
<!-- datasource -->
|
| 160 |
28539
|
eri.katsar
|
<property>
|
| 161 |
29238
|
eri.katsar
|
<name>mapreduce.multipleoutputs.namedOutput.${out1}.key</name>
|
| 162 |
28550
|
eri.katsar
|
<value>org.apache.hadoop.io.Text</value>
|
| 163 |
28539
|
eri.katsar
|
</property>
|
| 164 |
|
|
<property>
|
| 165 |
29238
|
eri.katsar
|
<name>mapreduce.multipleoutputs.namedOutput.${out1}.value</name>
|
| 166 |
28539
|
eri.katsar
|
<value>org.apache.hadoop.io.Text</value>
|
| 167 |
|
|
</property>
|
| 168 |
|
|
<property>
|
| 169 |
29238
|
eri.katsar
|
<name>mapreduce.multipleoutputs.namedOutput.${out1}.format</name>
|
| 170 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 171 |
|
|
</value>
|
| 172 |
28514
|
eri.katsar
|
</property>
|
| 173 |
29238
|
eri.katsar
|
<!-- datasourceLanguage -->
|
| 174 |
28514
|
eri.katsar
|
<property>
|
| 175 |
29238
|
eri.katsar
|
<name>mapreduce.multipleoutputs.namedOutput.${out2}.key</name>
|
| 176 |
28550
|
eri.katsar
|
<value>org.apache.hadoop.io.Text</value>
|
| 177 |
28514
|
eri.katsar
|
</property>
|
| 178 |
|
|
<property>
|
| 179 |
29238
|
eri.katsar
|
<name>mapreduce.multipleoutputs.namedOutput.${out2}.value</name>
|
| 180 |
28539
|
eri.katsar
|
<value>org.apache.hadoop.io.Text</value>
|
| 181 |
28514
|
eri.katsar
|
</property>
|
| 182 |
28539
|
eri.katsar
|
<property>
|
| 183 |
29238
|
eri.katsar
|
<name>mapreduce.multipleoutputs.namedOutput.${out2}.format</name>
|
| 184 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 185 |
|
|
</value>
|
| 186 |
28539
|
eri.katsar
|
</property>
|
| 187 |
29327
|
eri.katsar
|
|
| 188 |
|
|
|
| 189 |
|
|
|
| 190 |
29238
|
eri.katsar
|
<!-- datasourceOrganization -->
|
| 191 |
|
|
<property>
|
| 192 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out3}.key</name>
|
| 193 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 194 |
|
|
</property>
|
| 195 |
|
|
<property>
|
| 196 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out3}.value</name>
|
| 197 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 198 |
|
|
</property>
|
| 199 |
|
|
<property>
|
| 200 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out3}.format</name>
|
| 201 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 202 |
|
|
</value>
|
| 203 |
29238
|
eri.katsar
|
</property>
|
| 204 |
29327
|
eri.katsar
|
|
| 205 |
|
|
<!-- datasourceTopic -->
|
| 206 |
29238
|
eri.katsar
|
<property>
|
| 207 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out4}.key</name>
|
| 208 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 209 |
|
|
</property>
|
| 210 |
|
|
<property>
|
| 211 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out4}.value</name>
|
| 212 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 213 |
|
|
</property>
|
| 214 |
|
|
<property>
|
| 215 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out4}.format</name>
|
| 216 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 217 |
|
|
</value>
|
| 218 |
29238
|
eri.katsar
|
</property>
|
| 219 |
29327
|
eri.katsar
|
|
| 220 |
|
|
<!-- resultDatasource -->
|
| 221 |
29238
|
eri.katsar
|
<property>
|
| 222 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out5}.key</name>
|
| 223 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 224 |
|
|
</property>
|
| 225 |
|
|
<property>
|
| 226 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out5}.value</name>
|
| 227 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 228 |
|
|
</property>
|
| 229 |
|
|
<property>
|
| 230 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out5}.format</name>
|
| 231 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 232 |
|
|
</value>
|
| 233 |
29238
|
eri.katsar
|
</property>
|
| 234 |
29327
|
eri.katsar
|
<!-- organization -->
|
| 235 |
29238
|
eri.katsar
|
<property>
|
| 236 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out6}.key</name>
|
| 237 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 238 |
|
|
</property>
|
| 239 |
|
|
<property>
|
| 240 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out6}.value</name>
|
| 241 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 242 |
|
|
</property>
|
| 243 |
|
|
<property>
|
| 244 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out6}.format</name>
|
| 245 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 246 |
|
|
</value>
|
| 247 |
29238
|
eri.katsar
|
</property>
|
| 248 |
29327
|
eri.katsar
|
|
| 249 |
|
|
<!-- projectOrganization -->
|
| 250 |
29238
|
eri.katsar
|
<property>
|
| 251 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out7}.key</name>
|
| 252 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 253 |
|
|
</property>
|
| 254 |
|
|
<property>
|
| 255 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out7}.value</name>
|
| 256 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 257 |
|
|
</property>
|
| 258 |
|
|
<property>
|
| 259 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out7}.format</name>
|
| 260 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 261 |
|
|
</value>
|
| 262 |
29238
|
eri.katsar
|
</property>
|
| 263 |
29327
|
eri.katsar
|
<!-- resultProject -->
|
| 264 |
29238
|
eri.katsar
|
<property>
|
| 265 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out8}.key</name>
|
| 266 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 267 |
|
|
</property>
|
| 268 |
|
|
<property>
|
| 269 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out8}.value</name>
|
| 270 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 271 |
|
|
</property>
|
| 272 |
|
|
<property>
|
| 273 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out8}.format</name>
|
| 274 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 275 |
|
|
</value>
|
| 276 |
29238
|
eri.katsar
|
</property>
|
| 277 |
29327
|
eri.katsar
|
|
| 278 |
|
|
<!-- project -->
|
| 279 |
29238
|
eri.katsar
|
<property>
|
| 280 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out9}.key</name>
|
| 281 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 282 |
|
|
</property>
|
| 283 |
|
|
<property>
|
| 284 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out9}.value</name>
|
| 285 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 286 |
|
|
</property>
|
| 287 |
|
|
<property>
|
| 288 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out9}.format</name>
|
| 289 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 290 |
|
|
</value>
|
| 291 |
29238
|
eri.katsar
|
</property>
|
| 292 |
29327
|
eri.katsar
|
|
| 293 |
|
|
<!-- resultConcept -->
|
| 294 |
29238
|
eri.katsar
|
<property>
|
| 295 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out10}.key</name>
|
| 296 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 297 |
|
|
</property>
|
| 298 |
|
|
<property>
|
| 299 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out10}.value</name>
|
| 300 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 301 |
|
|
</property>
|
| 302 |
|
|
<property>
|
| 303 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out10}.format</name>
|
| 304 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 305 |
|
|
</value>
|
| 306 |
29238
|
eri.katsar
|
</property>
|
| 307 |
29327
|
eri.katsar
|
|
| 308 |
29238
|
eri.katsar
|
<!-- resultClaim -->
|
| 309 |
|
|
<property>
|
| 310 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out11}.key</name>
|
| 311 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 312 |
|
|
</property>
|
| 313 |
|
|
<property>
|
| 314 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out11}.value</name>
|
| 315 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 316 |
|
|
</property>
|
| 317 |
|
|
<property>
|
| 318 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out11}.format</name>
|
| 319 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 320 |
|
|
</value>
|
| 321 |
29238
|
eri.katsar
|
</property>
|
| 322 |
29327
|
eri.katsar
|
|
| 323 |
29238
|
eri.katsar
|
<!-- resultClassification -->
|
| 324 |
|
|
<property>
|
| 325 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out12}.key</name>
|
| 326 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 327 |
|
|
</property>
|
| 328 |
|
|
<property>
|
| 329 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out12}.value</name>
|
| 330 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 331 |
|
|
</property>
|
| 332 |
|
|
<property>
|
| 333 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out12}.format</name>
|
| 334 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 335 |
|
|
</value>
|
| 336 |
29238
|
eri.katsar
|
</property>
|
| 337 |
29327
|
eri.katsar
|
|
| 338 |
29238
|
eri.katsar
|
<!-- resultLanguage -->
|
| 339 |
|
|
<property>
|
| 340 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out13}.key</name>
|
| 341 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 342 |
|
|
</property>
|
| 343 |
|
|
<property>
|
| 344 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out13}.value</name>
|
| 345 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 346 |
|
|
</property>
|
| 347 |
|
|
<property>
|
| 348 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out13}.format</name>
|
| 349 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 350 |
|
|
</value>
|
| 351 |
29238
|
eri.katsar
|
</property>
|
| 352 |
29327
|
eri.katsar
|
|
| 353 |
|
|
<!-- resultProject -->
|
| 354 |
29238
|
eri.katsar
|
<property>
|
| 355 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out14}.key</name>
|
| 356 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 357 |
|
|
</property>
|
| 358 |
|
|
<property>
|
| 359 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out14}.value</name>
|
| 360 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 361 |
|
|
</property>
|
| 362 |
|
|
<property>
|
| 363 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out14}.format</name>
|
| 364 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 365 |
|
|
</value>
|
| 366 |
29238
|
eri.katsar
|
</property>
|
| 367 |
29327
|
eri.katsar
|
<!-- resultResult -->
|
| 368 |
29238
|
eri.katsar
|
<property>
|
| 369 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out15}.key</name>
|
| 370 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 371 |
|
|
</property>
|
| 372 |
|
|
<property>
|
| 373 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out15}.value</name>
|
| 374 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 375 |
|
|
</property>
|
| 376 |
|
|
<property>
|
| 377 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out15}.format</name>
|
| 378 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 379 |
|
|
</value>
|
| 380 |
29238
|
eri.katsar
|
</property>
|
| 381 |
29327
|
eri.katsar
|
<!-- resultTopic -->
|
| 382 |
29238
|
eri.katsar
|
<property>
|
| 383 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out16}.key</name>
|
| 384 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 385 |
|
|
</property>
|
| 386 |
|
|
<property>
|
| 387 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out16}.value</name>
|
| 388 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 389 |
|
|
</property>
|
| 390 |
|
|
<property>
|
| 391 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out16}.format</name>
|
| 392 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 393 |
|
|
</value>
|
| 394 |
29238
|
eri.katsar
|
</property>
|
| 395 |
29327
|
eri.katsar
|
|
| 396 |
|
|
<!-- resultDatasource -->
|
| 397 |
29238
|
eri.katsar
|
<property>
|
| 398 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out17}.key</name>
|
| 399 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 400 |
|
|
</property>
|
| 401 |
|
|
<property>
|
| 402 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out17}.value</name>
|
| 403 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 404 |
|
|
</property>
|
| 405 |
|
|
<property>
|
| 406 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out17}.format</name>
|
| 407 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 408 |
|
|
</value>
|
| 409 |
29238
|
eri.katsar
|
</property>
|
| 410 |
29327
|
eri.katsar
|
|
| 411 |
|
|
|
| 412 |
|
|
|
| 413 |
|
|
<!-- result -->
|
| 414 |
29238
|
eri.katsar
|
<property>
|
| 415 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out18}.key</name>
|
| 416 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 417 |
|
|
</property>
|
| 418 |
|
|
<property>
|
| 419 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out18}.value</name>
|
| 420 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 421 |
|
|
</property>
|
| 422 |
|
|
<property>
|
| 423 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out18}.format</name>
|
| 424 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 425 |
|
|
</value>
|
| 426 |
29238
|
eri.katsar
|
</property>
|
| 427 |
29327
|
eri.katsar
|
|
| 428 |
|
|
<!-- claim -->
|
| 429 |
29238
|
eri.katsar
|
<property>
|
| 430 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out19}.key</name>
|
| 431 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 432 |
|
|
</property>
|
| 433 |
|
|
<property>
|
| 434 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out19}.value</name>
|
| 435 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 436 |
|
|
</property>
|
| 437 |
|
|
<property>
|
| 438 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out19}.format</name>
|
| 439 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 440 |
|
|
</value>
|
| 441 |
29238
|
eri.katsar
|
</property>
|
| 442 |
29327
|
eri.katsar
|
<!-- cncept -->
|
| 443 |
29238
|
eri.katsar
|
<property>
|
| 444 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out20}.key</name>
|
| 445 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 446 |
|
|
</property>
|
| 447 |
|
|
<property>
|
| 448 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out20}.value</name>
|
| 449 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
| 450 |
|
|
</property>
|
| 451 |
|
|
<property>
|
| 452 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out20}.format</name>
|
| 453 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat
|
| 454 |
|
|
</value>
|
| 455 |
29238
|
eri.katsar
|
</property>
|
| 456 |
29327
|
eri.katsar
|
|
| 457 |
29442
|
eri.katsar
|
|
| 458 |
28514
|
eri.katsar
|
<!-- ## Classes of mapper and reducer -->
|
| 459 |
29327
|
eri.katsar
|
|
| 460 |
28514
|
eri.katsar
|
<property>
|
| 461 |
|
|
<name>mapreduce.map.class</name>
|
| 462 |
29327
|
eri.katsar
|
<value>eu.dnetlib.data.mapreduce.hbase.statsExport.StatsMapper
|
| 463 |
|
|
</value>
|
| 464 |
28514
|
eri.katsar
|
</property>
|
| 465 |
|
|
<property>
|
| 466 |
|
|
<name>mapreduce.reduce.class</name>
|
| 467 |
29327
|
eri.katsar
|
<value>eu.dnetlib.data.mapreduce.hbase.statsExport.StatsReducer
|
| 468 |
|
|
</value>
|
| 469 |
28514
|
eri.katsar
|
</property>
|
| 470 |
28535
|
eri.katsar
|
<property>
|
| 471 |
|
|
<name>io.serializations</name>
|
| 472 |
29327
|
eri.katsar
|
<value>org.apache.hadoop.io.serializer.WritableSerialization
|
| 473 |
|
|
</value>
|
| 474 |
28535
|
eri.katsar
|
</property>
|
| 475 |
28519
|
eri.katsar
|
<!-- ## Custom config -->
|
| 476 |
29327
|
eri.katsar
|
|
| 477 |
28514
|
eri.katsar
|
<!--delim character used to seperate fields in hdfs dump files <property> -->
|
| 478 |
28519
|
eri.katsar
|
<property>
|
| 479 |
29238
|
eri.katsar
|
<name>stats.delim</name>
|
| 480 |
28565
|
eri.katsar
|
<value>${Stats_delim_Character}</value>
|
| 481 |
28519
|
eri.katsar
|
</property>
|
| 482 |
28514
|
eri.katsar
|
<!--default string for Null String Values -->
|
| 483 |
|
|
<property>
|
| 484 |
|
|
<name>stats.nullString</name>
|
| 485 |
28565
|
eri.katsar
|
<value>${Stats_null_String_Field}</value>
|
| 486 |
28514
|
eri.katsar
|
</property>
|
| 487 |
|
|
<!--default string for Null Numeric Values -->
|
| 488 |
|
|
<property>
|
| 489 |
|
|
<name>stats.nullNum</name>
|
| 490 |
28565
|
eri.katsar
|
<value>${Stats_null_Numeric_Field}</value>
|
| 491 |
28514
|
eri.katsar
|
</property>
|
| 492 |
29365
|
eri.katsar
|
<property>
|
| 493 |
|
|
<name>stats.enclChar</name>
|
| 494 |
|
|
<value>${Stats_enclosing_Character}</value>
|
| 495 |
|
|
</property>
|
| 496 |
|
|
|
| 497 |
|
|
|
| 498 |
28514
|
eri.katsar
|
<!--source hbase table -->
|
| 499 |
29538
|
eri.katsar
|
<property>
|
| 500 |
28514
|
eri.katsar
|
<name>hbase.mapreduce.inputtable</name>
|
| 501 |
28565
|
eri.katsar
|
<value>${Stats_Hbase_Source_Table}</value>
|
| 502 |
28514
|
eri.katsar
|
</property>
|
| 503 |
29538
|
eri.katsar
|
<property>
|
| 504 |
29497
|
eri.katsar
|
<name>hbase.mapred.inputtable</name>
|
| 505 |
|
|
<value>${Stats_Hbase_Source_Table}</value>
|
| 506 |
29538
|
eri.katsar
|
</property>
|
| 507 |
|
|
|
| 508 |
29327
|
eri.katsar
|
<property>
|
| 509 |
|
|
<!-- mapping of protos entities to tables in the relDB -->
|
| 510 |
|
|
<name>stats.dbTablesMap</name>
|
| 511 |
|
|
<value>${Stats_db_table_map}</value>
|
| 512 |
29249
|
eri.katsar
|
</property>
|
| 513 |
29365
|
eri.katsar
|
|
| 514 |
|
|
<!-- This directory does not correspond to a data store. In fact, this directory only contains multiple data stores. It has to be set to the name of the workflow node. -->
|
| 515 |
28514
|
eri.katsar
|
<property>
|
| 516 |
|
|
<name>mapred.output.dir</name>
|
| 517 |
28565
|
eri.katsar
|
<value>${Stats_output_Path}</value>
|
| 518 |
28514
|
eri.katsar
|
</property>
|
| 519 |
29327
|
eri.katsar
|
<property>
|
| 520 |
|
|
<name>stats.indexConf</name>
|
| 521 |
|
|
<value>${Stats_indexConf}</value>
|
| 522 |
|
|
</property>
|
| 523 |
28514
|
eri.katsar
|
<!-- ## Workflow node parameters -->
|
| 524 |
|
|
<property>
|
| 525 |
|
|
<name>mapred.reduce.tasks</name>
|
| 526 |
29327
|
eri.katsar
|
<value>${numReducers}</value>
|
| 527 |
28514
|
eri.katsar
|
</property>
|
| 528 |
29538
|
eri.katsar
|
|
| 529 |
28514
|
eri.katsar
|
</configuration>
|
| 530 |
28512
|
eri.katsar
|
</map-reduce>
|
| 531 |
31099
|
eri.katsar
|
<ok to="exportContext" />
|
| 532 |
29442
|
eri.katsar
|
<error to="fail" />
|
| 533 |
|
|
</action>
|
| 534 |
|
|
|
| 535 |
29556
|
eri.katsar
|
<action name='exportContext'>
|
| 536 |
|
|
<java>
|
| 537 |
|
|
<prepare>
|
| 538 |
|
|
</prepare>
|
| 539 |
29442
|
eri.katsar
|
<configuration>
|
| 540 |
|
|
<property>
|
| 541 |
|
|
<name>mapred.job.queue.name</name>
|
| 542 |
|
|
<value>${queueName}</value>
|
| 543 |
|
|
</property>
|
| 544 |
|
|
</configuration>
|
| 545 |
29581
|
eri.katsar
|
<main-class>eu.dnetlib.iis.core.workflows.stats.ContextExportWrapper</main-class>
|
| 546 |
|
|
<arg>${Stats_output_Path}</arg>
|
| 547 |
|
|
<arg>${isLookupEndpoint}</arg>
|
| 548 |
29556
|
eri.katsar
|
</java>
|
| 549 |
31099
|
eri.katsar
|
<ok to="prepareDatabase" />
|
| 550 |
28512
|
eri.katsar
|
<error to="fail" />
|
| 551 |
|
|
</action>
|
| 552 |
29327
|
eri.katsar
|
|
| 553 |
29581
|
eri.katsar
|
|
| 554 |
28543
|
eri.katsar
|
<action name="prepareDatabase">
|
| 555 |
28499
|
eri.katsar
|
<java>
|
| 556 |
29327
|
eri.katsar
|
|
| 557 |
28499
|
eri.katsar
|
<prepare>
|
| 558 |
|
|
</prepare>
|
| 559 |
|
|
<configuration>
|
| 560 |
|
|
<property>
|
| 561 |
|
|
<name>mapred.job.queue.name</name>
|
| 562 |
|
|
<value>${queueName}</value>
|
| 563 |
|
|
</property>
|
| 564 |
|
|
</configuration>
|
| 565 |
29327
|
eri.katsar
|
|
| 566 |
29238
|
eri.katsar
|
<main-class>eu.dnetlib.iis.core.java.ProcessWrapper</main-class>
|
| 567 |
29538
|
eri.katsar
|
<arg>-SworkingDir=${workingDir}</arg>
|
| 568 |
28499
|
eri.katsar
|
<arg>eu.dnetlib.iis.core.workflows.stats.DBInitWrapper</arg>
|
| 569 |
31069
|
eri.katsar
|
<arg>-PStats_db_Url=${Stats_db_Url}</arg>
|
| 570 |
28565
|
eri.katsar
|
<arg>-PStats_db_User=${Stats_db_User}</arg>
|
| 571 |
|
|
<arg>-PStats_db_Pass=${Stats_db_Pass}</arg>
|
| 572 |
|
|
<arg>-PStats_db_Driver=${Stats_db_Driver}</arg>
|
| 573 |
29327
|
eri.katsar
|
|
| 574 |
28499
|
eri.katsar
|
</java>
|
| 575 |
28611
|
eri.katsar
|
<ok to="sqoopImport" />
|
| 576 |
28499
|
eri.katsar
|
<error to="fail" />
|
| 577 |
|
|
</action>
|
| 578 |
29327
|
eri.katsar
|
|
| 579 |
28499
|
eri.katsar
|
<action name="sqoopImport">
|
| 580 |
|
|
<java>
|
| 581 |
28571
|
eri.katsar
|
<prepare>
|
| 582 |
|
|
</prepare>
|
| 583 |
28499
|
eri.katsar
|
<configuration>
|
| 584 |
|
|
<property>
|
| 585 |
|
|
<name>mapred.job.queue.name</name>
|
| 586 |
|
|
<value>${queueName}</value>
|
| 587 |
|
|
</property>
|
| 588 |
29327
|
eri.katsar
|
|
| 589 |
29238
|
eri.katsar
|
<property>
|
| 590 |
|
|
<name>oozie.sqoop.log.level</name>
|
| 591 |
|
|
<value>DEBUG</value>
|
| 592 |
|
|
</property>
|
| 593 |
29327
|
eri.katsar
|
|
| 594 |
28499
|
eri.katsar
|
</configuration>
|
| 595 |
29327
|
eri.katsar
|
|
| 596 |
29238
|
eri.katsar
|
<main-class>eu.dnetlib.iis.core.java.ProcessWrapper</main-class>
|
| 597 |
29538
|
eri.katsar
|
<arg>-SworkingDir=${workingDir}</arg>
|
| 598 |
|
|
<arg>eu.dnetlib.iis.core.workflows.stats.SqoopWrapper</arg>
|
| 599 |
|
|
<arg>-PStats_db_Url=${Stats_db_Url}</arg>
|
| 600 |
28565
|
eri.katsar
|
<arg>-PStats_db_User=${Stats_db_User}</arg>
|
| 601 |
|
|
<arg>-PStats_db_Pass=${Stats_db_Pass}</arg>
|
| 602 |
29327
|
eri.katsar
|
|
| 603 |
28605
|
eri.katsar
|
<arg>-PStats_output_Path=${Stats_output_Path}</arg>
|
| 604 |
29327
|
eri.katsar
|
<arg>-PStats_sqoop_RecsPerStatement=${Stats_sqoop_RecsPerStatement}
|
| 605 |
|
|
</arg>
|
| 606 |
28605
|
eri.katsar
|
<arg>-PStats_sqoop_ReducersCount=${Stats_sqoop_ReducersCount}</arg>
|
| 607 |
29327
|
eri.katsar
|
<arg>-PStats_sqoop_StatementPerTrans=${Stats_sqoop_StatementPerTrans}
|
| 608 |
|
|
</arg>
|
| 609 |
29238
|
eri.katsar
|
<arg>-PStats_delim_Character=${Stats_delim_Character}</arg>
|
| 610 |
29327
|
eri.katsar
|
<arg>-PStats_db_table_map=${Stats_db_table_map}</arg>
|
| 611 |
29365
|
eri.katsar
|
<arg>-PStats_enclosing_Character=${Stats_enclosing_Character} </arg>
|
| 612 |
|
|
|
| 613 |
|
|
</java>
|
| 614 |
31069
|
eri.katsar
|
<ok to="finalizeDatabase" />
|
| 615 |
28499
|
eri.katsar
|
<error to="fail" />
|
| 616 |
|
|
</action>
|
| 617 |
29327
|
eri.katsar
|
|
| 618 |
28543
|
eri.katsar
|
<action name="finalizeDatabase">
|
| 619 |
28499
|
eri.katsar
|
<java>
|
| 620 |
|
|
<prepare>
|
| 621 |
|
|
</prepare>
|
| 622 |
|
|
<configuration>
|
| 623 |
|
|
<property>
|
| 624 |
|
|
<name>mapred.job.queue.name</name>
|
| 625 |
|
|
<value>${queueName}</value>
|
| 626 |
|
|
</property>
|
| 627 |
|
|
</configuration>
|
| 628 |
29327
|
eri.katsar
|
|
| 629 |
29238
|
eri.katsar
|
<main-class>eu.dnetlib.iis.core.java.ProcessWrapper</main-class>
|
| 630 |
29538
|
eri.katsar
|
<arg>-SworkingDir=${workingDir}</arg>
|
| 631 |
29238
|
eri.katsar
|
<arg>eu.dnetlib.iis.core.workflows.stats.DBFinalizeWrapper</arg>
|
| 632 |
28565
|
eri.katsar
|
<arg>-PStats_db_Url=${Stats_db_Url}</arg>
|
| 633 |
|
|
<arg>-PStats_db_User=${Stats_db_User}</arg>
|
| 634 |
|
|
<arg>-PStats_db_Pass=${Stats_db_Pass}</arg>
|
| 635 |
29327
|
eri.katsar
|
<arg>-PStats_db_Driver=${Stats_db_Driver}</arg>
|
| 636 |
28499
|
eri.katsar
|
</java>
|
| 637 |
31099
|
eri.katsar
|
<ok to="cleanUpHDFS" />
|
| 638 |
28499
|
eri.katsar
|
<error to="fail" />
|
| 639 |
|
|
</action>
|
| 640 |
31069
|
eri.katsar
|
|
| 641 |
|
|
|
| 642 |
29999
|
eri.katsar
|
<action name="cleanUpHDFS">
|
| 643 |
31069
|
eri.katsar
|
<fs>
|
| 644 |
|
|
|
| 645 |
|
|
<delete path="${nameNode}${Stats_output_Path}" />
|
| 646 |
|
|
|
| 647 |
29998
|
eri.katsar
|
</fs>
|
| 648 |
|
|
<ok to="end" />
|
| 649 |
|
|
<error to="fail" />
|
| 650 |
|
|
</action>
|
| 651 |
29442
|
eri.katsar
|
<kill name="fail">
|
| 652 |
28499
|
eri.katsar
|
<message>
|
| 653 |
29327
|
eri.katsar
|
Unfortunately, the process failed -- error message:
|
| 654 |
|
|
[${wf:errorMessage(wf:lastErrorNode())}]
|
| 655 |
28499
|
eri.katsar
|
</message>
|
| 656 |
|
|
</kill>
|
| 657 |
|
|
<end name="end" />
|
| 658 |
29412
|
eri.katsar
|
</workflow-app>
|