1
|
package eu.dnetlib.data.mdstore.modular.mongodb;
|
2
|
|
3
|
import java.util.Collections;
|
4
|
import java.util.Date;
|
5
|
import java.util.List;
|
6
|
import java.util.Set;
|
7
|
|
8
|
import org.apache.commons.lang.StringUtils;
|
9
|
import org.apache.commons.logging.Log;
|
10
|
import org.apache.commons.logging.LogFactory;
|
11
|
import org.joda.time.DateTime;
|
12
|
import org.joda.time.Days;
|
13
|
import org.springframework.beans.factory.annotation.Required;
|
14
|
|
15
|
import com.google.common.collect.Lists;
|
16
|
import com.mongodb.BasicDBList;
|
17
|
import com.mongodb.BasicDBObject;
|
18
|
import com.mongodb.DB;
|
19
|
import com.mongodb.DBCollection;
|
20
|
import com.mongodb.DBCursor;
|
21
|
import com.mongodb.DBObject;
|
22
|
import com.mongodb.QueryBuilder;
|
23
|
import com.mongodb.WriteConcern;
|
24
|
|
25
|
import eu.dnetlib.data.mdstore.MDStoreServiceException;
|
26
|
import eu.dnetlib.data.mdstore.modular.connector.MDStore;
|
27
|
import eu.dnetlib.data.mdstore.modular.connector.MDStoreExpiredInfo;
|
28
|
import eu.dnetlib.data.mdstore.modular.connector.MDStoreManagerInfo;
|
29
|
import eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionInfo;
|
30
|
import eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager;
|
31
|
import eu.dnetlib.data.mdstore.modular.mongodb.utils.MDStoreUtils;
|
32
|
|
33
|
/**
|
34
|
* The Class MDStoreTransactionManager.
|
35
|
*/
|
36
|
public class MDStoreTransactionManagerImpl implements MDStoreTransactionManager {
|
37
|
|
38
|
/** The Constant log. */
|
39
|
private static final Log log = LogFactory.getLog(MDStoreTransactionManagerImpl.class);
|
40
|
|
41
|
/**
|
42
|
* The table name.
|
43
|
*/
|
44
|
private static String TABLE_NAME = "metadataManager";
|
45
|
|
46
|
/** The max number of concurrent transactions per mdstore. */
|
47
|
private int maxTransactions = 1;
|
48
|
|
49
|
/**
|
50
|
* The db.
|
51
|
*/
|
52
|
|
53
|
private DB db;
|
54
|
|
55
|
/**
|
56
|
* The manager table.
|
57
|
*/
|
58
|
private DBCollection managerTable;
|
59
|
|
60
|
/** The expired days. */
|
61
|
private int expiredDays;
|
62
|
|
63
|
/**
|
64
|
* Bootstrap manager.
|
65
|
*/
|
66
|
private void bootstrapManager() {
|
67
|
log.debug("Bootstrap Manager start");
|
68
|
final DBCollection metadataColl = db.getCollection("metadata");
|
69
|
final DBCursor values = metadataColl.find();
|
70
|
this.setManagerTable(db.getCollection(TABLE_NAME));
|
71
|
while (values.hasNext()) {
|
72
|
final DBObject object = values.next();
|
73
|
final String id = (String) object.get("mdId");
|
74
|
String newId = null;
|
75
|
if (id.contains("_")) {
|
76
|
|
77
|
newId = StringUtils.substringBefore(id, "_");
|
78
|
}
|
79
|
|
80
|
final BasicDBObject input = new BasicDBObject();
|
81
|
input.put("mdId", id);
|
82
|
input.put("currentId", newId);
|
83
|
input.put("expiring", new String[] {});
|
84
|
input.put("transactions", new String[] {});
|
85
|
getManagerTable().insert(input);
|
86
|
log.debug(String.format("Added %s to Metadata Manager data structure", id));
|
87
|
|
88
|
}
|
89
|
final BasicDBObject ensureIndex = new BasicDBObject();
|
90
|
ensureIndex.put("mdId", 1);
|
91
|
log.debug("Create index in MetadaManager ");
|
92
|
this.getManagerTable().createIndex(ensureIndex);
|
93
|
}
|
94
|
|
95
|
/**
|
96
|
* Verify consistency.
|
97
|
*
|
98
|
* @throws MDStoreServiceException
|
99
|
* the MD store service exception
|
100
|
*/
|
101
|
@Override
|
102
|
public void verifyConsistency() throws MDStoreServiceException {
|
103
|
if (this.getManagerTable() == null) {
|
104
|
if (!db.collectionExists(TABLE_NAME)) {
|
105
|
bootstrapManager();
|
106
|
if (this.getManagerTable() == null) { throw new MDStoreServiceException("Something bad happen, unable to create managerTable"); }
|
107
|
} else {
|
108
|
this.setManagerTable(db.getCollection(TABLE_NAME));
|
109
|
}
|
110
|
}
|
111
|
}
|
112
|
|
113
|
/**
|
114
|
* {@inheritDoc}
|
115
|
*
|
116
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#createMDStore(java.lang.String)
|
117
|
*/
|
118
|
@Override
|
119
|
public void createMDStore(final String mdId) throws MDStoreServiceException {
|
120
|
log.debug("Creating new mdstore");
|
121
|
verifyConsistency();
|
122
|
String newId = mdId;
|
123
|
if (mdId.contains("_")) {
|
124
|
newId = StringUtils.substringBefore(mdId, "_");
|
125
|
}
|
126
|
final BasicDBObject instance = new BasicDBObject();
|
127
|
instance.put("mdId", mdId);
|
128
|
instance.put("currentId", newId);
|
129
|
instance.put("expiring", new String[] {});
|
130
|
getManagerTable().insert(instance);
|
131
|
this.getManagerTable().save(instance);
|
132
|
}
|
133
|
|
134
|
/**
|
135
|
* {@inheritDoc}
|
136
|
*
|
137
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#dropMDStore(java.lang.String)
|
138
|
*/
|
139
|
@Override
|
140
|
public void dropMDStore(final String mdId) throws MDStoreServiceException {
|
141
|
verifyConsistency();
|
142
|
log.debug("Droping MDStore: " + mdId);
|
143
|
final BasicDBObject query = new BasicDBObject();
|
144
|
query.put("mdId", mdId);
|
145
|
final DBCursor cursor = this.getManagerTable().find(query);
|
146
|
if (cursor.hasNext() == false) { return; }
|
147
|
final DBObject item = cursor.next();
|
148
|
garbage();
|
149
|
final String collectionName = (String) item.get("currentId");
|
150
|
this.db.getCollection(collectionName).drop();
|
151
|
this.db.getCollection("discarded-" + collectionName).drop();
|
152
|
this.getManagerTable().remove(query);
|
153
|
|
154
|
}
|
155
|
|
156
|
/**
|
157
|
* {@inheritDoc}
|
158
|
*
|
159
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#getMDStoreCollection(java.lang.String)
|
160
|
*/
|
161
|
@Override
|
162
|
public String getMDStoreCollection(final String mdId) throws MDStoreServiceException {
|
163
|
verifyConsistency();
|
164
|
final BasicDBObject query = new BasicDBObject();
|
165
|
query.put("mdId", mdId);
|
166
|
final DBCursor cursor = this.getManagerTable().find(query);
|
167
|
if (cursor.hasNext() == false) {
|
168
|
log.error("Error, unable to find Mdstore with Id " + mdId);
|
169
|
throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdId);
|
170
|
}
|
171
|
return (String) cursor.next().get("currentId");
|
172
|
}
|
173
|
|
174
|
/**
|
175
|
* {@inheritDoc}
|
176
|
*
|
177
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#startTransaction(java.lang.String, boolean)
|
178
|
*/
|
179
|
@Override
|
180
|
public String startTransaction(final String mdId, final boolean refresh) throws MDStoreServiceException {
|
181
|
verifyConsistency();
|
182
|
log.info("Start transaction for metadata store " + mdId);
|
183
|
final BasicDBObject query = new BasicDBObject();
|
184
|
query.put("mdId", mdId);
|
185
|
final DBCursor cursor = this.getManagerTable().find(query);
|
186
|
if (cursor.hasNext() == false) { throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdId); }
|
187
|
|
188
|
String idCreation = StringUtils.substringBefore(mdId, "_");
|
189
|
|
190
|
idCreation = idCreation + "::" + System.currentTimeMillis();
|
191
|
final DBObject object = cursor.next();
|
192
|
|
193
|
BasicDBList values;
|
194
|
if (object.containsField("transactions")) {
|
195
|
values = (BasicDBList) object.get("transactions");
|
196
|
if (values.size() > getMaxTransactions()) { throw new MDStoreServiceException("Cannot create more than " + getMaxTransactions()
|
197
|
+ " transactions, found: " + values.size() + ", mdId:" + mdId); }
|
198
|
} else {
|
199
|
values = new BasicDBList();
|
200
|
object.put("transactions", values);
|
201
|
}
|
202
|
final BasicDBObject transactionMetadata = new BasicDBObject();
|
203
|
transactionMetadata.put("id", idCreation.toString());
|
204
|
transactionMetadata.put("refresh", refresh);
|
205
|
transactionMetadata.put("date", new Date());
|
206
|
values.add(transactionMetadata);
|
207
|
this.getManagerTable().save(object);
|
208
|
return idCreation.toString();
|
209
|
}
|
210
|
|
211
|
/**
|
212
|
* {@inheritDoc}
|
213
|
*
|
214
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#commit(java.lang.String, java.lang.String,
|
215
|
* eu.dnetlib.data.mdstore.modular.connector.MDStore)
|
216
|
*/
|
217
|
@Override
|
218
|
public boolean commit(final String transactionId, final String mdstoreId, final MDStore current) throws MDStoreServiceException {
|
219
|
verifyConsistency();
|
220
|
final BasicDBObject query = new BasicDBObject();
|
221
|
query.put("mdId", mdstoreId);
|
222
|
final DBCursor cursor = this.getManagerTable().find(query);
|
223
|
if (cursor.hasNext() == false) { throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdstoreId); }
|
224
|
final DBObject object = cursor.next();
|
225
|
final BasicDBList transactions = (BasicDBList) object.get("transactions");
|
226
|
final DBObject transaction = findTransaction(transactions, transactionId);
|
227
|
if (transaction == null) { throw new MDStoreServiceException("Error, unable to find transaction with Id " + transactionId); }
|
228
|
final boolean refresh = (Boolean) transaction.get("refresh");
|
229
|
transactions.remove(transaction);
|
230
|
final String oldId = (String) object.get("currentId");
|
231
|
if (refresh) {
|
232
|
object.put("currentId", transactionId);
|
233
|
final BasicDBList stillUsed = (BasicDBList) object.get("expiring");
|
234
|
if (stillUsed.size() == 0) {
|
235
|
db.getCollection(oldId).drop();
|
236
|
db.getCollection("discarded-" + oldId).drop();
|
237
|
}
|
238
|
log.debug("Replaced collection ");
|
239
|
} else {
|
240
|
log.debug("commit incremental ");
|
241
|
updateIncremental(transactionId, oldId);
|
242
|
db.getCollection(transactionId).drop();
|
243
|
db.getCollection("discarded-" + transactionId).drop();
|
244
|
}
|
245
|
this.managerTable.save(object);
|
246
|
|
247
|
log.info("Committed transaction for metadata store " + mdstoreId);
|
248
|
return true;
|
249
|
}
|
250
|
|
251
|
/**
|
252
|
* Find transaction.
|
253
|
*
|
254
|
* @param transactions
|
255
|
* the transactions
|
256
|
* @param transactionId
|
257
|
* the transaction id
|
258
|
* @return the DB object
|
259
|
*/
|
260
|
private DBObject findTransaction(final BasicDBList transactions, final String transactionId) {
|
261
|
if (transactions.size() == 0) { return null; }
|
262
|
for (int i = 0; i < transactions.size(); i++) {
|
263
|
final BasicDBObject transaction = (BasicDBObject) transactions.get(i);
|
264
|
final String id = (String) transaction.get("id");
|
265
|
if (transactionId.equals(id)) { return transaction; }
|
266
|
}
|
267
|
return null;
|
268
|
|
269
|
}
|
270
|
|
271
|
/**
|
272
|
* Gets the db.
|
273
|
*
|
274
|
* @return the db
|
275
|
*/
|
276
|
public DB getDb() {
|
277
|
return db;
|
278
|
}
|
279
|
|
280
|
/**
|
281
|
* Sets the db.
|
282
|
*
|
283
|
* @param db
|
284
|
* the db to set
|
285
|
*/
|
286
|
@Required
|
287
|
public void setDb(final DB db) {
|
288
|
this.db = db;
|
289
|
}
|
290
|
|
291
|
/**
|
292
|
* {@inheritDoc}
|
293
|
*
|
294
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#readMdStore(java.lang.String)
|
295
|
*/
|
296
|
@Override
|
297
|
public String readMdStore(final String mdStoreId) throws MDStoreServiceException {
|
298
|
verifyConsistency();
|
299
|
final BasicDBObject query = new BasicDBObject();
|
300
|
query.put("mdId", mdStoreId);
|
301
|
final DBCursor cursor = this.getManagerTable().find(query);
|
302
|
if (cursor.hasNext() == false) { throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdStoreId); }
|
303
|
final DBObject object = cursor.next();
|
304
|
final String currentId = (String) object.get("currentId");
|
305
|
final BasicDBList values = (BasicDBList) object.get("expiring");
|
306
|
updateMdstoreUsed(values, currentId);
|
307
|
this.getManagerTable().save(object);
|
308
|
return currentId;
|
309
|
|
310
|
}
|
311
|
|
312
|
/**
|
313
|
* Update mdstore used.
|
314
|
*
|
315
|
* @param values
|
316
|
* the values
|
317
|
* @param mdId
|
318
|
* the md id
|
319
|
*/
|
320
|
private void updateMdstoreUsed(final BasicDBList values, final String mdId) {
|
321
|
if (values.size() > 0) {
|
322
|
for (int i = 0; i < values.size(); i++) {
|
323
|
final DBObject obj = (DBObject) values.get(i);
|
324
|
final String id = (String) obj.get("id");
|
325
|
if (mdId.equals(id)) {
|
326
|
obj.put("lastRead", new Date());
|
327
|
return;
|
328
|
}
|
329
|
}
|
330
|
}
|
331
|
final BasicDBObject readStore = new BasicDBObject();
|
332
|
readStore.put("id", mdId);
|
333
|
readStore.put("lastRead", new Date());
|
334
|
values.add(readStore);
|
335
|
}
|
336
|
|
337
|
/**
|
338
|
* Gets the manager table.
|
339
|
*
|
340
|
* @return the managerTable
|
341
|
*/
|
342
|
public DBCollection getManagerTable() {
|
343
|
return managerTable;
|
344
|
}
|
345
|
|
346
|
/**
|
347
|
* Sets the manager table.
|
348
|
*
|
349
|
* @param managerTable
|
350
|
* the managerTable to set
|
351
|
*/
|
352
|
public void setManagerTable(final DBCollection managerTable) {
|
353
|
this.managerTable = managerTable;
|
354
|
}
|
355
|
|
356
|
/*
|
357
|
* (non-Javadoc)
|
358
|
*
|
359
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#getInfoForCurrentMdStore(java.lang.String)
|
360
|
*/
|
361
|
@Override
|
362
|
public MDStoreManagerInfo getInfoForCurrentMdStore(final String mdStoreId) throws MDStoreServiceException {
|
363
|
verifyConsistency();
|
364
|
final BasicDBObject query = new BasicDBObject();
|
365
|
query.put("mdId", mdStoreId);
|
366
|
final DBCursor cursor = this.getManagerTable().find(query);
|
367
|
if (cursor.hasNext() == false) { throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdStoreId); }
|
368
|
final DBObject object = cursor.next();
|
369
|
final MDStoreManagerInfo result = new MDStoreManagerInfo();
|
370
|
result.setCurrentId((String) object.get("currentId"));
|
371
|
result.setMdId((String) object.get("mdId"));
|
372
|
final BasicDBList values = (BasicDBList) object.get("expiring");
|
373
|
for (int i = 0; i < values.size(); i++) {
|
374
|
final MDStoreExpiredInfo stillused = new MDStoreExpiredInfo();
|
375
|
final DBObject value = (DBObject) values.get(i);
|
376
|
stillused.setId((String) value.get("id"));
|
377
|
stillused.setLastRead((Date) value.get("lastRead"));
|
378
|
result.addExpiredItem(stillused);
|
379
|
}
|
380
|
final BasicDBList transactions = (BasicDBList) object.get("transactions");
|
381
|
if (transactions != null) {
|
382
|
for (int i = 0; i < transactions.size(); i++) {
|
383
|
final MDStoreTransactionInfo transaction = new MDStoreTransactionInfo();
|
384
|
final DBObject value = (DBObject) transactions.get(i);
|
385
|
final String transactionId = (String) value.get("id");
|
386
|
transaction.setId(transactionId);
|
387
|
transaction.setDate((Date) value.get("date"));
|
388
|
transaction.setRefresh((Boolean) value.get("refresh"));
|
389
|
transaction.setSize(db.getCollection(transactionId).count());
|
390
|
result.addTransactionInfo(transaction);
|
391
|
}
|
392
|
}
|
393
|
return result;
|
394
|
}
|
395
|
|
396
|
/*
|
397
|
* (non-Javadoc)
|
398
|
*
|
399
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#dropUsed(java.lang.String, java.lang.String)
|
400
|
*/
|
401
|
@Override
|
402
|
public Boolean dropUsed(final String mdId, final String idToDrop) throws MDStoreServiceException {
|
403
|
verifyConsistency();
|
404
|
final BasicDBObject query = new BasicDBObject();
|
405
|
query.put("mdId", mdId);
|
406
|
final DBCursor cursor = this.getManagerTable().find(query);
|
407
|
if (cursor.hasNext() == false) { throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdId); }
|
408
|
final DBObject object = cursor.next();
|
409
|
final BasicDBList values = (BasicDBList) object.get("expiring");
|
410
|
for (int i = 0; i < values.size(); i++) {
|
411
|
final DBObject value = (DBObject) values.get(i);
|
412
|
final String currentUsedId = (String) value.get("id");
|
413
|
if (currentUsedId.equals(idToDrop)) {
|
414
|
db.getCollection(idToDrop).drop();
|
415
|
db.getCollection("discarded-" + idToDrop).drop();
|
416
|
values.remove(value);
|
417
|
this.managerTable.save(object);
|
418
|
return true;
|
419
|
}
|
420
|
}
|
421
|
throw new MDStoreServiceException("Error, unable to drop old collection " + idToDrop);
|
422
|
}
|
423
|
|
424
|
/*
|
425
|
* (non-Javadoc)
|
426
|
*
|
427
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#garbage()
|
428
|
*/
|
429
|
@Override
|
430
|
public void garbage() throws MDStoreServiceException {
|
431
|
verifyConsistency();
|
432
|
log.info("Start garbage collection of MdStore");
|
433
|
final DBCursor cursor = this.managerTable.find();
|
434
|
int totalDeleted = 0;
|
435
|
while (cursor.hasNext()) {
|
436
|
final DBObject currentObject = cursor.next();
|
437
|
if (log.isDebugEnabled()) {
|
438
|
log.debug("start to check id: " + (String) currentObject.get("currentId"));
|
439
|
}
|
440
|
garbageExpiring(currentObject, (String) currentObject.get("currentId"));
|
441
|
garbageTransactions(currentObject, (String) currentObject.get("currentId"));
|
442
|
this.managerTable.save(currentObject);
|
443
|
}
|
444
|
|
445
|
// DELETING Collection that are not in the metadataManager table
|
446
|
Set<String> collections = this.db.getCollectionNames();
|
447
|
for (String collection : collections) {
|
448
|
if (collection.length() > 30 && collection.contains("discarded-") == false) {
|
449
|
final DBObject item = getMetadataObjectForCollections(collection);
|
450
|
|
451
|
if (shouldDelete(collection, item)) {
|
452
|
if (log.isDebugEnabled()) {
|
453
|
log.debug("delete collection: " + collection + " from mongo");
|
454
|
}
|
455
|
db.getCollection(collection).drop();
|
456
|
db.getCollection("discarded-" + collection).drop();
|
457
|
if (log.isDebugEnabled()) {
|
458
|
log.debug("delete collection: discarded-" + collection + " from mongo");
|
459
|
}
|
460
|
}
|
461
|
}
|
462
|
}
|
463
|
|
464
|
log.info("Complete garbage collection of MdStore, total store deleted: " + totalDeleted);
|
465
|
}
|
466
|
|
467
|
private DBObject getMetadataObjectForCollections(final String collectionName) {
|
468
|
if (collectionName == null) { return null; }
|
469
|
final String postfix = "_TURTdG9yZURTUmVzb3VyY2VzL01EU3RvcmVEU1Jlc291cmNlVHlwZQ==";
|
470
|
final String tmp = collectionName.contains("discarded-") == true ? StringUtils.substringAfter(collectionName, "discarded-") : collectionName;
|
471
|
final String collectionNameCleaned = StringUtils.substringBefore(tmp, "::") + postfix;
|
472
|
|
473
|
DBObject query = QueryBuilder.start("mdId").is(collectionNameCleaned).get();
|
474
|
return this.managerTable.findOne(query);
|
475
|
}
|
476
|
|
477
|
private boolean shouldDelete(final String collectionName, final DBObject metadataManagerInstance) {
|
478
|
String currentId = (String) metadataManagerInstance.get("currentId");
|
479
|
if (collectionName.equals(currentId)) { return false; }
|
480
|
BasicDBList expiringList = (BasicDBList) metadataManagerInstance.get("expiring");
|
481
|
if (findInList(expiringList, collectionName, "id") == true) { return false; }
|
482
|
BasicDBList transactionsList = (BasicDBList) metadataManagerInstance.get("transactions");
|
483
|
if (findInList(transactionsList, collectionName, "id") == true) { return false; }
|
484
|
return true;
|
485
|
}
|
486
|
|
487
|
private boolean findInList(final BasicDBList list, final String object, final String tagname) {
|
488
|
if (list == null) { return false; }
|
489
|
for (int i = 0; i < list.size(); i++) {
|
490
|
DBObject currentObject = (DBObject) list.get(i);
|
491
|
final String id = (String) currentObject.get(tagname);
|
492
|
if (id.equals(object)) { return true; }
|
493
|
}
|
494
|
return false;
|
495
|
}
|
496
|
|
497
|
/**
|
498
|
* Delete.
|
499
|
*
|
500
|
* @param list
|
501
|
* the list
|
502
|
* @param toRemove
|
503
|
* the to remove
|
504
|
*/
|
505
|
private void delete(final BasicDBList list, final List<DBObject> toRemove) {
|
506
|
|
507
|
for (final DBObject obj : toRemove) {
|
508
|
if (log.isDebugEnabled()) {
|
509
|
log.debug("deleting " + obj);
|
510
|
}
|
511
|
list.remove(obj);
|
512
|
}
|
513
|
}
|
514
|
|
515
|
/**
|
516
|
* Garbage transactions.
|
517
|
*
|
518
|
* @param currentObject
|
519
|
* the current object
|
520
|
* @param currentId
|
521
|
* the current id
|
522
|
*/
|
523
|
private void garbageTransactions(final DBObject currentObject, final String currentId) {
|
524
|
if (log.isDebugEnabled()) {
|
525
|
log.debug("Start garbage transactions ");
|
526
|
}
|
527
|
|
528
|
final BasicDBList expiring = (BasicDBList) currentObject.get("transactions");
|
529
|
if (expiring == null || expiring.size() <= getMaxTransactions()) { return; }
|
530
|
|
531
|
List<DBObject> expiringList = Lists.newArrayList();
|
532
|
|
533
|
for (int i = 0; i < expiring.size(); i++) {
|
534
|
final DBObject cobj = (DBObject) expiring.get(i);
|
535
|
if (cobj != null) {
|
536
|
expiringList.add((DBObject) expiring.get(i));
|
537
|
}
|
538
|
|
539
|
}
|
540
|
|
541
|
Collections.sort(expiringList, MDStoreUtils.getComparatorOnDate());
|
542
|
|
543
|
List<DBObject> toRemove = Lists.newArrayList();
|
544
|
int i = 0;
|
545
|
|
546
|
// We should remove the k item less recent
|
547
|
// where k = numberOftotalTransaction - maxNumberOfTransaction
|
548
|
// k = numberOfItemToRemove
|
549
|
|
550
|
while (expiringList.size() - toRemove.size() > getMaxTransactions() || i < expiringList.size()) {
|
551
|
DBObject currentObj = expiringList.get(i++);
|
552
|
String objectId = (String) currentObj.get("id");
|
553
|
if (!objectId.equals(currentId)) {
|
554
|
if (log.isDebugEnabled()) {
|
555
|
log.debug("delete collection: " + objectId + " from mongo");
|
556
|
}
|
557
|
db.getCollection(objectId).drop();
|
558
|
db.getCollection("discarded-" + objectId).drop();
|
559
|
if (log.isDebugEnabled()) {
|
560
|
log.debug("delete collection: discarded-" + objectId + " from mongo");
|
561
|
}
|
562
|
toRemove.add(currentObj);
|
563
|
} else {
|
564
|
if (log.isDebugEnabled()) {
|
565
|
log.debug("Cannot remove transaction " + objectId + " because is the currentId: " + currentId);
|
566
|
}
|
567
|
}
|
568
|
}
|
569
|
|
570
|
delete(expiring, toRemove);
|
571
|
log.info("Deleted " + toRemove.size() + " transactions, mdStore Id:" + currentObject.get("mdId"));
|
572
|
}
|
573
|
|
574
|
/**
|
575
|
* Garbage expiring.
|
576
|
*
|
577
|
* @param currentObject
|
578
|
* the current object
|
579
|
* @param currentId
|
580
|
* the current id
|
581
|
*/
|
582
|
private void garbageExpiring(final DBObject currentObject, final String currentId) {
|
583
|
if (log.isDebugEnabled()) {
|
584
|
log.debug("Start to search expiring mdstores for id: " + currentObject.get("mdId"));
|
585
|
}
|
586
|
final BasicDBList expiring = (BasicDBList) currentObject.get("expiring");
|
587
|
final List<DBObject> toRemove = Lists.newArrayList();
|
588
|
if (log.isDebugEnabled()) {
|
589
|
if (expiring == null) {
|
590
|
log.debug("expiring list is null");
|
591
|
} else {
|
592
|
log.debug("expiring list size is :" + expiring.size());
|
593
|
}
|
594
|
}
|
595
|
if (expiring == null || expiring.size() == 0) {
|
596
|
log.info("Deleted 0 expired collections, mdStore Id:" + currentObject.get("mdId"));
|
597
|
return;
|
598
|
}
|
599
|
for (int i = 0; i < expiring.size(); i++) {
|
600
|
final DBObject currentExpiredStore = (DBObject) expiring.get(i);
|
601
|
final String currentUsedId = (String) currentExpiredStore.get("id");
|
602
|
final Days d = getExpiringDays(currentExpiredStore, "lastRead");
|
603
|
if (log.isDebugEnabled()) {
|
604
|
log.debug("the store :" + currentId + " expired since " + d.getDays() + "days ");
|
605
|
}
|
606
|
// DELETE the collection where the last time they was read
|
607
|
// is more than 3 days ago
|
608
|
if (d.getDays() > getExpiredDays()) {
|
609
|
if (currentUsedId.equals(currentId) == false) {
|
610
|
db.getCollection(currentUsedId).drop();
|
611
|
db.getCollection("discarded-" + currentUsedId).drop();
|
612
|
log.debug("deleted collection " + currentUsedId);
|
613
|
}
|
614
|
toRemove.add(currentExpiredStore);
|
615
|
}
|
616
|
}
|
617
|
delete(expiring, toRemove);
|
618
|
log.info("Deleted expired " + toRemove.size() + "collections, mdStore Id:" + currentObject.get("mdId"));
|
619
|
}
|
620
|
|
621
|
/**
|
622
|
* Gets the expiring days.
|
623
|
*
|
624
|
* @param value
|
625
|
* the value
|
626
|
* @param paramName
|
627
|
* the param name
|
628
|
* @return the expiring days
|
629
|
*/
|
630
|
private Days getExpiringDays(final DBObject value, final String paramName) {
|
631
|
final Date lastRead = (Date) value.get(paramName);
|
632
|
final DateTime last = new DateTime(lastRead);
|
633
|
final DateTime today = new DateTime();
|
634
|
final Days d = Days.daysBetween(last, today);
|
635
|
return d;
|
636
|
}
|
637
|
|
638
|
/**
|
639
|
* Gets the expired days.
|
640
|
*
|
641
|
* @return the expiredDays
|
642
|
*/
|
643
|
public int getExpiredDays() {
|
644
|
if (this.expiredDays == 0) { return 3; }
|
645
|
return expiredDays;
|
646
|
}
|
647
|
|
648
|
/**
|
649
|
* Sets the expired days.
|
650
|
*
|
651
|
* @param expiredDays
|
652
|
* the expiredDays to set
|
653
|
*/
|
654
|
public void setExpiredDays(final int expiredDays) {
|
655
|
this.expiredDays = expiredDays;
|
656
|
}
|
657
|
|
658
|
/**
|
659
|
* Update incremental.
|
660
|
*
|
661
|
* @param transactionId
|
662
|
* the transaction id
|
663
|
* @param currentId
|
664
|
* the current id
|
665
|
*/
|
666
|
private void updateIncremental(final String transactionId, final String currentId) {
|
667
|
final DBCollection transaction = db.getCollection(transactionId);
|
668
|
final DBCollection mdstore = db.getCollection(currentId);
|
669
|
final DBCursor cursor = transaction.find();
|
670
|
if (!cursor.hasNext()) { return; }
|
671
|
DBObject currentObj = cursor.next();
|
672
|
while (cursor.hasNext()) {
|
673
|
|
674
|
BasicDBObject newObj = new BasicDBObject();
|
675
|
|
676
|
final String id = (String) currentObj.get("id");
|
677
|
final String body = (String) currentObj.get("body");
|
678
|
newObj.put("id", id);
|
679
|
newObj.put("body", body);
|
680
|
if (id != null && !id.isEmpty()) {
|
681
|
mdstore.update(new BasicDBObject("id", id), newObj, true, false, WriteConcern.ACKNOWLEDGED);
|
682
|
}
|
683
|
currentObj = cursor.next();
|
684
|
}
|
685
|
mdstore.getDB().command("{fsync:1}");
|
686
|
}
|
687
|
|
688
|
/*
|
689
|
* (non-Javadoc)
|
690
|
*
|
691
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#dropTransaction(java.lang.String, java.lang.String)
|
692
|
*/
|
693
|
@Override
|
694
|
public Boolean dropTransaction(final String mdId, final String idToDrop) throws MDStoreServiceException {
|
695
|
verifyConsistency();
|
696
|
final BasicDBObject query = new BasicDBObject();
|
697
|
query.put("mdId", mdId);
|
698
|
final DBCursor cursor = this.getManagerTable().find(query);
|
699
|
if (cursor.hasNext() == false) { throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdId); }
|
700
|
final DBObject object = cursor.next();
|
701
|
final BasicDBList values = (BasicDBList) object.get("transactions");
|
702
|
for (int i = 0; i < values.size(); i++) {
|
703
|
final DBObject value = (DBObject) values.get(i);
|
704
|
final String currentUsedId = (String) value.get("id");
|
705
|
if (currentUsedId.equals(idToDrop)) {
|
706
|
db.getCollection(idToDrop).drop();
|
707
|
db.getCollection("discarded-" + idToDrop).drop();
|
708
|
values.remove(value);
|
709
|
this.managerTable.save(object);
|
710
|
return true;
|
711
|
}
|
712
|
}
|
713
|
throw new MDStoreServiceException("Error, unable to drop old collection " + idToDrop);
|
714
|
}
|
715
|
|
716
|
/**
|
717
|
* Gets the max transactions.
|
718
|
*
|
719
|
* @return the maxTransactions
|
720
|
*/
|
721
|
public int getMaxTransactions() {
|
722
|
return maxTransactions;
|
723
|
}
|
724
|
|
725
|
/**
|
726
|
* Sets the max transactions.
|
727
|
*
|
728
|
* @param maxTransactions
|
729
|
* the maxTransactions to set
|
730
|
*/
|
731
|
public void setMaxTransactions(final int maxTransactions) {
|
732
|
this.maxTransactions = maxTransactions;
|
733
|
}
|
734
|
}
|