Revision 35459
Added by Argiro Kokogiannaki about 9 years ago
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/models/index.html | ||
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<!DOCTYPE HTML> |
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<html> |
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<head> |
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<title>OpenAIRE</title> |
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</head> |
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<body> |
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<h1>Access denied</h1> |
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</body> |
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</html> |
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| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/openaire.xml | ||
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<?xml version="1.0" encoding="utf-8"?> |
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<extension type="component" version="2.5.0" method="upgrade"> |
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<name>OpenAIRE</name> |
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<creationDate>April 2012</creationDate> |
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<author>OpenAIRE Consortium</author> |
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<authorEmail>admin@openaire.eu</authorEmail> |
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<authorUrl>http://www.openaire.eu/</authorUrl> |
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<copyright>Copyright © 2010-12, OpenAIRE Consortium</copyright> |
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<license>Apache License</license> |
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<version>0.0.1</version> |
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<description>Open Access Infrastructure for Research in Europe</description> |
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<scriptfile>install.php</scriptfile> |
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<install> |
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<sql> |
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<file driver="mysql" charset="utf8">sql/install.mysql.utf8.sql</file> |
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</sql> |
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</install> |
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<uninstall> |
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<sql> |
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<file driver="mysql" charset="utf8">sql/uninstall.mysql.utf8.sql</file> |
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</sql> |
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</uninstall> |
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<update> |
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<schemas> |
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<schemapath type="mysql">sql/updates/mysql</schemapath> |
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</schemas> |
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</update> |
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<files folder="site"> |
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<filename>index.html</filename> |
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<filename>openaire.php</filename> |
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<filename>controller.php</filename> |
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<filename>router.php</filename> |
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<folder>models</folder> |
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<folder>views</folder> |
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<folder>helpers</folder> |
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<folder>js</folder> |
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<folder>css</folder> |
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<folder>images</folder> |
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<folder>language</folder> |
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</files> |
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<administration> |
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<menu img="./components/com_openaire/images/menu.png">OPENAIRE</menu> |
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<files folder="admin"> |
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<filename>index.html</filename> |
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<filename>openaire.php</filename> |
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<filename>controller.php</filename> |
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<filename>config.xml</filename> |
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<folder>sql</folder> |
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<folder>views</folder> |
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<folder>css</folder> |
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<folder>images</folder> |
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<folder>language</folder> |
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</files> |
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</administration> |
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</extension> |
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| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/publicationhelper.php | ||
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<?php |
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defined('_JEXEC') or die('Access denied');
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jimport('joomla.methods');
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// This helper _formats publications. |
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abstract class PublicationHelper {
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const OPENAIRE = 'openaire'; |
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const MAX_AUTHORS = 15; |
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const MAX_PROJECTS = 15; |
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const MAX_DESCRIPTION = 500; |
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const SUFFIX = '...'; |
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const OPEN_ACCESS = 'OPEN'; |
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const CLOSED_ACCESS = 'CLOSED'; |
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const RESTRICTED_ACCESS = 'RESTRICTED'; |
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const EMBARGO_ACCESS = 'EMBARGO'; |
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// Format a publication. |
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// $publication the publication to format |
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// $itemId the item ID to use for internal links |
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// return a string containing the full HTML for the publication or an empty string if any errors occur |
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public static function formatPublication($publication, $itemId) {
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if ($publication == NULL) |
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return ''; |
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//:: _formatTrustMeter($publication).PublicationHelper |
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$publication = PublicationHelper :: _formatTitle(htmlspecialchars($publication -> title), $publication -> accessMode, $publication -> id, $publication -> source, $publication -> url, $itemId, |
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isset($publication -> inferred)?$publication -> inferred:false, |
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isset($publication -> trust)?$publication -> trust:"", |
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isset($publication -> provenance)?$publication -> provenance:"") . PublicationHelper :: _formatData($publication, $itemId). PublicationHelper :: _formatDescription($publication -> description); |
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return ($publication == NULL) ? '' : ('<div class="srchRow">' . $publication . '</div>');
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} |
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public static function _formatTitle($title, $accessMode, $id, $source, $url, $itemId, $inferred = false, $trust = "", $provenance = "") {
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switch ($accessMode) {
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case PublicationHelper :: OPEN_ACCESS: |
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$accessModeClass = 'openAccess'; |
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$accessModeTitle = JText :: _('OPEN_ACCESS');
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break; |
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case PublicationHelper :: EMBARGO_ACCESS: |
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$accessModeClass = 'embargoAccess'; |
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$accessModeTitle = JText :: _('EMBARGO_ACCESS');
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break; |
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case PublicationHelper :: RESTRICTED_ACCESS: |
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$accessModeClass = 'restrictedAccess'; |
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$accessModeTitle = JText :: _('RESTRICTED_ACCESS');
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break; |
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case PublicationHelper :: CLOSED_ACCESS: |
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$accessModeClass = 'closedAccess'; |
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$accessModeTitle = JText :: _('CLOSED_ACCESS');
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break; |
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default: |
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$accessModeClass = NULL; |
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$accessModeTitle = NULL; |
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} |
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//return ($title == NULL) ? '' : ('<h4' . (($accessModeClass == NULL) ? '' : (' class="' . $accessModeClass . '" title="' . $accessModeTitle . '"')) . '>' . (($source == self :: OPENAIRE) ? (($id == NULL) ? '' : ('<a href="' . JRoute :: _(JUri :: base() . 'index.php?option=com_openaire&view=article&Itemid=' . $itemId . '&articleId=' . $id) . '">')) : (($url == NULL) ? '' : ('<a target="_blank" class="icon-external" href="' . $url . '">'))) . $title . (($source == self :: OPENAIRE) ? (($id == NULL) ? '' : ('</a>')) : (($url == NULL) ? '' : ('</a>'))) . ($inferred == true?" <span class='inferred'><img src='templates/yoo_solar/styles/openaire/images/box_info_ok.png' /></span><div style='display: none'><div class='inferred-popup' id='popup-". $id. "'>trust: $trust, provenance: $provenance </div></div>" :"") . '</h4>');
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return ($title == NULL) ? '' : ('<h4' . (($accessModeClass == NULL) ? '' : (' class="' . $accessModeClass . '" title="' . $accessModeTitle . '"')) . '>' . (($source == self :: OPENAIRE) ? (($id == NULL) ? '' : ('<a href="' . JRoute :: _('index.php?option=com_openaire&view=article&Itemid=' . $itemId . '&articleId=' . $id) . '">')) : (($url == NULL) ? '' : ('<a target="_blank" class="icon-external" href="' . $url . '">'))) . $title . (($source == self :: OPENAIRE) ? (($id == NULL) ? '' : ('</a>')) : (($url == NULL) ? '' : ('</a>'))) . '</h4>');
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} |
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public static function formatTrustMeter($publication) {
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if ($publication == NULL) |
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return ''; |
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if ( property_exists($publication,'similarity')){
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if ( $publication->similarity!=null){
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$similarity=$publication -> similarity*100; |
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return '<span style=" display: none; ">' .($similarity<10?'0':'').$similarity.'</span> <div title="'.($publication -> similarity*100).'%" style="width:80%;" class="uk-progress"><div class="uk-progress-bar" style="width: '.($publication -> similarity*100).'%;"> </div></div>'; |
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} |
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} |
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return ''; |
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} |
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public static function _formatData($publication, $itemId) {
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if ($publication == NULL) |
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return ''; |
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$authors = PublicationHelper :: _formatAuthors($publication -> authors, $itemId); |
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$year = PublicationHelper :: _formatYear($publication -> year); |
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$data = array(); |
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$data[] = $authors . ((($authors == NULL) || ($year == NULL)) ? '' : ' ') . $year; |
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$data[] = PublicationHelper :: _formatProjects($publication -> projects, $itemId); |
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$data[] = PublicationHelper :: _formatEmbargoEndDate($publication -> embargoEndDate); |
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$data = array_filter($data); |
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return ($data == NULL) ? '' : ('<div class="biblio">' . implode('<br />', $data) . '</div>');
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} |
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public static function _formatAuthors($authors, $itemId) {
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$authors = ($authors == NULL) ? NULL : array_filter(array_map(function ($author) use ($itemId) {return PublicationHelper :: _formatAuthor($author, $itemId);}, $authors));
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return ($authors == NULL) ? '' : (implode('; ', array_slice($authors, 0, PublicationHelper :: MAX_AUTHORS)) . ((count($authors) > PublicationHelper :: MAX_AUTHORS) ? ';...' : ''));
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} |
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public static function _formatAuthor($author, $itemId) {
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return (($author == NULL) || ((($author -> lastName == NULL) || ($author -> firstName == NULL)) && ($author -> fullName == NULL))) ? '' : ('<span class="auth">' . (($author -> id == NULL) ? '' : ('<a href="' . JRoute :: _('index.php?option=com_openaire&view=person&Itemid=' . $itemId . '&personId=' . $author -> id) . '">')) . ((($author -> lastName == NULL) || ($author -> firstName == NULL)) ? $author -> fullName : ($author -> lastName . ', ' . $author -> firstName)) . (($author -> id == NULL) ? '' : '</a>') . '</span>');
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} |
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public static function _formatYear($year) {
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return ($year == NULL) ? '' : ('<span class="year">(' . $year . ')</span>');
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} |
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public static function _formatProjects($projects, $itemId) {
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$projects = ($projects == NULL) ? NULL : array_filter(array_map(function ($project) use ($itemId) {return PublicationHelper :: _formatProject($project, $itemId);}, $projects));
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return ($projects == NULL) ? '' : (JText :: _('PROJECTS_') . ' ' . implode(', ', array_slice($projects, 0, PublicationHelper :: MAX_PROJECTS)) . ((count($projects) > PublicationHelper :: MAX_PROJECTS) ? ',...' : ''));
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} |
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public static function _formatProject($project, $itemId) {
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return (($project -> acronym == NULL) && ($project -> title == NULL)) ? '' : ('<span class="proj">' . (($project -> id == NULL) ? '' : ('<a href="' . JRoute :: _(JUri :: base() . 'index.php?option=com_openaire&view=project&Itemid=' . $itemId . '&projectId=' . $project -> id) . '">')) . (($project -> acronym == NULL) ? $project -> title : $project -> acronym) . (($project -> code == NULL) ? '' : (' (' . $project -> code . ')')) . (($project -> id == NULL) ? '' : '</a>') . '</span>');
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} |
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public static function _formatEmbargoEndDate($embargoEndDate) {
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return ($embargoEndDate == NULL) ? '' : ('<span class="dchdr">'.JText :: _('EMBARGO_END_DATE_') . ' </span><span class="embargoDate">' . date(JText :: _('DATE_FORMAT'), $embargoEndDate) . '</span>');
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} |
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public static function _formatDescription($description) {
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$description= ($description == NULL) ? '' : strip_tags($description); |
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return ($description == NULL) ? '' : ('<div class="description">' . ((strlen($description) > PublicationHelper :: MAX_DESCRIPTION) ? (substr($description, 0, PublicationHelper :: MAX_DESCRIPTION - strlen(PublicationHelper :: SUFFIX)) . PublicationHelper :: SUFFIX) : $description) . '</div>');
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} |
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public static function formatCitationLinks($citation) {
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if(sizeof($citation -> ids)==0){
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return '<h5>'.$citation -> title.'</h5>'; |
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}else{
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$citationId=$citation -> ids[0]; |
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if (sizeof($citation -> ids)>1){
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usort($citation -> ids, function ($a, $b) {if ($a->confidenceLevel == $b->confidenceLevel) {return 0;}return ($a->confidenceLevel > $b->confidenceLevel) ? -1 : 1;});
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$citationId=$citation -> ids[0]; |
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} |
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$link = '<h5>'.$citation -> title.'</h5>'; |
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if(strcmp($citationId -> type,'openaire')==0){
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$link ='<h5><a href="'. JUri :: base() . 'index.php?option=com_openaire&view=article&articleId='.$citationId->id.'">'.$citation -> title.'</a></h5>'; |
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}else if(strcmp($citationId -> type,"pmid")==0){
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$link ='<h5><a target="_blank" class="icon-external" href="http://www.ncbi.nlm.nih.gov/pubmed/'.$citationId->id.'">'.$citation -> title.'</a></h5>'; |
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}else if(strcmp($citationId -> type,"pmcid")==0){
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$link ='<h5><a target="_blank" class="icon-external" href="http://europepmc.org/articles/'.$citationId->id.'">'.$citation -> title.'</a></h5>'; |
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}else if(strcmp($citationId -> type,"arxiv")==0){
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$link ='<h5><a target="_blank" class="icon-external" href="http://arxiv.org/abs/'.$citationId->id.'">'.$citation -> title.'</a></h5>'; |
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}else if(strcmp($citationId -> type,"doi")==0){
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$link ='<h5><a target="_blank" class="icon-external" href="http://dx.doi.org/'.$citationId->id.'">'.$citation -> title.'</a></h5>'; |
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} |
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/*pmid 15558770 |
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doi 4821630 |
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other 380750 |
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medline 22244 |
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pii 8982 |
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publisher-id 8382 |
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pmcid 5107 |
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coden 335 |
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rrn 19 |
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art-access-id 2 |
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doaj 1 |
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arxiv*/ |
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//TODO add the rest id types |
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return $link; |
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} |
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} |
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} |
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| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/datasourcehelper.php | ||
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<?php |
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defined('_JEXEC') or die('Access denied');
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jimport('joomla.methods');
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// This helper formats datasources. |
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abstract class DatasourceHelper {
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const OPENAIRE = 'OpenAIRE publication 2.0'; |
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const DRIVER = 'OpenAIRE publication basic (DRIVER)'; |
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const DRIVER_OPENAIRE = 'OpenAIRE funding 2.0'; |
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const NON_COMPATIBLE = 'non compatible'; |
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const MAX_ORGANIZATIONS = 15; |
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const MAX_DESCRIPTION = 500; |
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const SUFFIX = '...'; |
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// Format a datasource. |
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// $datasource the datasource to format |
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// $itemId the item ID to use for internal links |
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// return a string containing the full HTML for the datasource or an empty string if any errors occur |
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public static function formatDatasource($datasource, $itemId) {
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if (($datasource == NULL) || (($datasource -> name == NULL) && ($datasource -> englishName == NULL))) |
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return ''; |
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switch ($datasource -> compatibility) {
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case DatasourceHelper :: OPENAIRE: |
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$compatibilityClass = 'openaireCompatible'; |
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break; |
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case DatasourceHelper :: DRIVER: |
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$compatibilityClass = 'driverCompatible'; |
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break; |
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case DatasourceHelper :: DRIVER_OPENAIRE: |
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$compatibilityClass = 'driverOpenaireCompatible'; |
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break; |
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case DatasourceHelper :: NON_COMPATIBLE: |
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$compatibilityClass = 'nonCompatible'; |
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break; |
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default: |
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$compatibilityClass = NULL; |
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} |
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return '<div class="srchRow"><h4' . (($compatibilityClass == NULL) ? '' : (' class="' . $compatibilityClass . '" title="' . $datasource -> compatibility . '"')) . '>' . (($datasource -> id == NULL) ? '' : ('<a href="' . JRoute :: _('index.php?option=com_openaire&view=datasource&Itemid=' . $itemId . '&datasourceId=' . $datasource -> id) . '">')) . $datasource -> name . ((($datasource -> name == NULL) || ($datasource -> englishName == NULL)) ? '' : ' - ') . $datasource -> englishName . (($datasource -> id == NULL) ? '' : '</a>') . '</h4>' . DatasourceHelper :: _formatData($datasource, $itemId) . DatasourceHelper :: _formatDescription($datasource -> description) . '</div>';
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} |
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public static function _formatData($datasource, $itemId) {
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if ($datasource == NULL) |
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return ''; |
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$data = array(); |
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$items = DatasourceHelper :: _formatItems($datasource -> items, $datasource -> date); |
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if ($items != NULL) |
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$data[] = $items; |
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$organizations = DatasourceHelper :: _formatOrganizations($datasource -> organizations, $itemId); |
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if ($organizations != NULL) |
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$data[] = JText :: _('ORGANIZATIONS_') . ' ' . $organizations;
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if ($datasource -> type != NULL) |
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$data[] = JText :: _('TYPE_') . ' ' . $datasource -> type;
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$languages = implode(', ', $datasource -> languages);
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if ($languages != NULL) |
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$data[] = JText :: _('LANGUAGES_') . ' ' . $languages;
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$policies = implode(', ', $datasource -> policies);
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if ($policies != NULL) |
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$data[] = JText :: _('POLICIES_') . ' ' . $policies;
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$contents = implode(', ', $datasource -> contents);
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if ($contents != NULL) |
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$data[] = JText :: _('CONTENTS_') . ' ' . $contents;
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if ($datasource -> url != NULL) |
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$data[] = JText :: _('WEBSITE_URL_') . ' <a class="icon-external" target="_blank" href="' . $datasource -> url . '">' . $datasource -> url . '</a>';
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$oaiPmh = implode(', ', array_filter(array_map(function ($url) {
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return ($url == NULL) ? '' : ('<a class="icon-external" target="_blank" href="' . $url . '">' . $url . '</a>');
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}, $datasource -> oaiPmhUrls))); |
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if ($oaiPmh != NULL) |
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$data[] = JText :: _('OAI_PMH_URL_') . ' ' . $oaiPmh;
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return ($data == NULL) ? '' : ('<div class="biblio">' . implode('<br />', $data) . '</div>');
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} |
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public static function _formatItems($items, $date) {
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return (($items == NULL) && ($date == NULL)) ? '' : ('<span class="items">(' . JText :: sprintf('N_ITEMS', $items) . ((($items == NULL) || ($date == NULL)) ? ' - ' : ' - ') . (($date == NULL) ? '' : date(JText :: _('DATE_FORMAT'), $date)) . ', ' . JText :: _('FROM_OPENDOAR') .')</span>');
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} |
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public static function _formatOrganizations($organizations, $itemId) {
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$organizations = ($organizations == NULL) ? NULL : array_filter(array_map(function ($organization) use ($itemId) {return DatasourceHelper :: _formatOrganization($organization, $itemId);}, $organizations));
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|
| 81 |
return ($organizations == NULL) ? '' : (implode(', ' , array_slice($organizations, 0, DatasourceHelper :: MAX_ORGANIZATIONS)) . ((count($organizations) > DatasourceHelper :: MAX_ORGANIZATIONS) ? ',...' : '') );
|
|
| 82 |
} |
|
| 83 |
|
|
| 84 |
public static function _formatOrganization($organization, $itemId) {
|
|
| 85 |
return (($organization == NULL) || (($organization -> shortName == NULL) && ($organization -> name == NULL))) ? '' : ('<span class="organization">' . (($organization -> id == NULL) ? '' : ('<a href="' . JRoute :: _('index.php?option=com_openaire&view=organization&Itemid=' . $itemId . '&organizationId=' . $organization -> id) . '">')) . (($organization -> shortName == NULL) ? $organization -> name : $organization -> shortName) . (($organization -> id == NULL) ? '' : '</a>') . '</span>');
|
|
| 86 |
} |
|
| 87 |
|
|
| 88 |
public static function _formatDescription($description) {
|
|
| 89 |
return ($description == NULL) ? '' : ('<div class="description">' . ((strlen($description) > DatasourceHelper :: MAX_DESCRIPTION) ? (substr($description, 0, DatasourceHelper :: MAX_DESCRIPTION - strlen(DatasourceHelper :: SUFFIX)) . DatasourceHelper :: SUFFIX) : $description) . '</div>');
|
|
| 90 |
} |
|
| 91 |
} |
|
| 92 |
|
|
| 93 |
//$datasource -> url δεν το θέλουμε |
|
| 94 |
//$datasource -> oaiPmhUrls δεν τα θέλουμε |
|
| 95 |
|
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/browsehelper.php | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Access denied');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.methods');
|
|
| 6 |
|
|
| 7 |
// This helper formats paging. |
|
| 8 |
abstract class BrowseHelper {
|
|
| 9 |
const MAX_ROWS = 5; |
|
| 10 |
const MAX_ROW = 24; |
|
| 11 |
|
|
| 12 |
// Format browse. |
|
| 13 |
// $statistics the statistics to format |
|
| 14 |
// $baseUrl the base URL to use for links |
|
| 15 |
// return a string containing the full HTML for browse or an empty string if any errors occur |
|
| 16 |
public static function formatBrowse($statistics, $baseUrl) {
|
|
| 17 |
return '<div class="quickViewSelections"><h3>' . JText :: _('AT_A_GLANCE') . '</h3><div class="flowWrapper">' . (($statistics == NULL) ? ('<div class="error">' . JText :: _('ERROR_RETRIEVING_STATISTICS') . '</div>') : implode('', array_map(function ($statistic) use ($baseUrl) {return BrowseHelper :: formatStatistic($statistic, $baseUrl);}, $statistics))) . '</div></div>';
|
|
| 18 |
} |
|
| 19 |
|
|
| 20 |
// Format a single statistic. |
|
| 21 |
// $statistic the statistic to format |
|
| 22 |
// $baseUrl the base URL to use for links |
|
| 23 |
// return a string containing the full HTML for the statistic or an empty string if any errors occur |
|
| 24 |
public static function formatStatistic($statistic, $baseUrl) {
|
|
| 25 |
// TODO JRoute :: _ keeps decoding urlencoded values, so this is just a hack to cope with this |
|
| 26 |
$data = ($statistic -> data == NULL) ? NULL : array_map(function ($row) use ($statistic, $baseUrl) {return '<a href="' . JRoute :: _($baseUrl . '&' . urlencode($statistic -> id) . '=' . urlencode($row -> id)) . '" class="entry" title="' . $row -> name . '">' . ((strlen($row -> name) > BrowseHelper :: MAX_ROW) ? (substr($row -> name, 0, BrowseHelper :: MAX_ROW - strlen('...')) . '...') : $row -> name) . '</a> <span>(' . $row -> count . ')</span>';}, $statistic -> data);
|
|
| 27 |
return '<div class="searchCol"><h5>' . $statistic -> title . '</h5>' . (($statistic -> data == NULL) ? ('<div class="box-info">' . $statistic -> error . '</div>') : ('<div><p>' . implode('<br />', array_slice($data, 0, BrowseHelper :: MAX_ROWS)) . ((count($data) > BrowseHelper :: MAX_ROWS) ? ('<br /><span class="viewmore">' . JText :: _('VIEW_MORE') . '</span>') : '') . '</p></div>')) . ((count($data) > BrowseHelper :: MAX_ROWS) ? ('<div style="display: none;"><div class="viewallpop"><div class="header"><h5>' . $statistic -> title . '</h5></div><p>' . implode('<br />', $data) . '</p></div></div>') : '') . '</div>';
|
|
| 28 |
} |
|
| 29 |
} |
|
| 30 |
|
|
| 31 |
|
|
| 32 |
|
|
| 33 |
|
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/openairehelper.php | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Access denied');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.methods');
|
|
| 6 |
|
|
| 7 |
// This helper formats paging. |
|
| 8 |
abstract class OpenaireHelper {
|
|
| 9 |
|
|
| 10 |
public static function initSearchAjaxUrls(&$document , $itemId) {
|
|
| 11 |
jimport('joomla.language.helper');
|
|
| 12 |
$languages = JLanguageHelper::getLanguages('lang_code');
|
|
| 13 |
$lang_code = JFactory::getLanguage()->getTag(); |
|
| 14 |
$sef = $languages[$lang_code]->sef; |
|
| 15 |
$document->addScriptDeclaration("var openairePublicationsRawUrl = '" . JUri::base()."index.php?lang=".$sef."&option=com_openaire&view=searchpublicationsraw&format=raw&Itemid=" . $itemId . "'");
|
|
| 16 |
$document->addScriptDeclaration("var openaireDatasetsRawUrl = '" . JUri::base()."index.php?lang=".$sef."&option=com_openaire&view=searchdatasetsraw&format=raw&Itemid=" . $itemId . "'");
|
|
| 17 |
$document->addScriptDeclaration("var openaireProjectsRawUrl = '" . JUri::base()."index.php?lang=".$sef."&option=com_openaire&view=searchprojectsraw&format=raw&Itemid=" . $itemId . "'");
|
|
| 18 |
$document->addScriptDeclaration("var openairePeopleRawUrl = '" . JUri::base()."index.php?lang=".$sef."&option=com_openaire&view=searchpeopleraw&format=raw&Itemid=" . $itemId . "'");
|
|
| 19 |
$document->addScriptDeclaration("var openaireDatasourcesRawUrl = '" . JUri::base()."index.php?lang=".$sef."&option=com_openaire&view=searchdatasourcesraw&format=raw&Itemid=" . $itemId . "'");
|
|
| 20 |
$document->addScriptDeclaration("var openaireOrganizationsRawUrl = '" .JUri::base()."index.php?lang=".$sef."&option=com_openaire&view=searchorganizationsraw&format=raw&Itemid=" . $itemId. "'");
|
|
| 21 |
} |
|
| 22 |
|
|
| 23 |
} |
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/projecthelper.php.bak | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Access denied');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.methods');
|
|
| 6 |
|
|
| 7 |
// This helper formats projects. |
|
| 8 |
abstract class ProjectHelper {
|
|
| 9 |
const MAX_ORGANIZATIONS = 15; |
|
| 10 |
|
|
| 11 |
// Format a project. |
|
| 12 |
// $project the project to format |
|
| 13 |
// $itemId the item ID to use for internal links |
|
| 14 |
// return a string containing the full HTML for the project or an empty string if any errors occur |
|
| 15 |
public static function formatProject($project, $itemId) {
|
|
| 16 |
if (($project == NULL) || (($project -> acronym == NULL) && ($project -> title == NULL))) |
|
| 17 |
return ''; |
|
| 18 |
return '<div class="srchRow"><h4' . ($project -> sc39 ? (' class="sc39" title="' . JText :: _('SPECIAL_CLAUSE_39') . '"') : '') . '>' . (($project -> id == NULL) ? '' : ('<a ' . 'href="' . JRoute :: _(JUri :: base() . 'index.php?option=com_openaire&view=project&Itemid=' . $itemId . '&projectId=' . $project -> id) . '">')) . $project -> acronym . ((($project -> acronym == NULL) || ($project -> title == NULL)) ? '' : ' - ') . $project -> title . (($project -> code == NULL) ? '' : (' ('. $project -> code . ')')) . (($project -> id == NULL) ? '' : ('</a>')) . '</h4>' . ProjectHelper :: _formatData($project, $itemId) . '</div>';
|
|
| 19 |
} |
|
| 20 |
|
|
| 21 |
public static function _formatData($project, $itemId) {
|
|
| 22 |
if ($project == NULL) |
|
| 23 |
return ''; |
|
| 24 |
$years = ProjectHelper :: _formatYears($project -> startYear, $project -> endYear); |
|
| 25 |
$organizations = ProjectHelper :: _formatOrganizations($project -> organizations, $itemId); |
|
| 26 |
return (($project -> funder == NULL) && ($organizations == NULL) && ($years == NULL)) ? '' : ('<div class="biblio">' . $project -> funder . ((($project -> funder == NULL) || ($years == NULL)) ? '' : ' ') . $years . (((($project -> funder == NULL) && ($years == NULL)) || ($organizations == NULL)) ? '' : '<br />') . (($organizations == NULL) ? '' : (JText :: _('PARTICIPANTS_') . ' ' . $organizations)) . '</div>');
|
|
| 27 |
} |
|
| 28 |
|
|
| 29 |
public static function _formatYears($startYear, $endYear) {
|
|
| 30 |
return (($startYear == NULL) && ($endYear == NULL)) ? '' : ('<span class="year">(' . $startYear . ((($startYear == NULL) || ($endYear == NULL)) ? '' : ' - ') . $endYear . ')</span>');
|
|
| 31 |
} |
|
| 32 |
|
|
| 33 |
public static function _formatOrganizations($organizations, $itemId) {
|
|
| 34 |
$organizations = ($organizations == NULL) ? NULL : array_filter(array_map(function ($organization) use ($itemId) {return ProjectHelper :: _formatOrganization($organization, $itemId);}, $organizations));
|
|
| 35 |
return ($organizations == NULL) ? '' : (implode(', ' , array_slice($organizations, 0, ProjectHelper :: MAX_ORGANIZATIONS)) . ((count($organizations) > ProjectHelper :: MAX_ORGANIZATIONS) ? ',...' : ''));
|
|
| 36 |
} |
|
| 37 |
|
|
| 38 |
public static function _formatOrganization($organization, $itemId) {
|
|
| 39 |
return (($organization == NULL) || (($organization -> shortName == NULL) && ($organization -> name == NULL))) ? '' : ('<span class="organization">' . (($organization -> id == NULL) ? '' : ('<a href="' . JRoute :: _(JUri :: base() . 'index.php?option=com_openaire&view=organization&Itemid=' . $itemId . '&organizationId=' . $organization -> id) . '">')) . (($organization -> shortName == NULL) ? $organization -> name : $organization -> shortName) . (($organization -> id == NULL) ? '' : '</a>') . '</span>');
|
|
| 40 |
} |
|
| 41 |
} |
|
| 42 |
|
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/form.php | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Restricted access');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.methods');
|
|
| 6 |
|
|
| 7 |
class OpenaireHelperForm {
|
|
| 8 |
public static function openForm($parameters, $attributes) {
|
|
| 9 |
global $app; |
|
| 10 |
$mainframe = $app; |
|
| 11 |
//$attributes['action'] = ($mainframe -> getCfg('sef') ? JRoute :: _('index.php?' . implode('&', array_map(function ($name, $value) {return $name . "=" . $value; }, array_keys($parameters), array_values($parameters)))) : 'index.php');
|
|
| 12 |
$attributes['action'] = JRoute :: _('index.php?' . implode('&', array_map(function ($name, $value) {return $name . "=" . $value; }, array_keys($parameters), array_values($parameters)))) ;
|
|
| 13 |
echo('<form ' . implode(' ', array_map(function ($name, $value) {return $name . '="' . $value . '"'; }, array_keys($attributes), array_values($attributes))) . '>');
|
|
| 14 |
if (!$mainframe -> getCfg('sef')) {
|
|
| 15 |
foreach ($parameters as $name => $value) |
|
| 16 |
echo('<input type="hidden" name="' . $name . '" value="' . $value . '" />');
|
|
| 17 |
} |
|
| 18 |
} |
|
| 19 |
|
|
| 20 |
public static function closeForm() {
|
|
| 21 |
echo('</form>');
|
|
| 22 |
} |
|
| 23 |
} |
|
| 24 |
|
|
| 25 |
?> |
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/piwikhelper.php | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Access denied');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.methods');
|
|
| 6 |
|
|
| 7 |
// This helper logs page views. |
|
| 8 |
abstract class PiwikHelper {
|
|
| 9 |
const MAX_DATA = 200; |
|
| 10 |
|
|
| 11 |
// Log a page view in Piwik. |
|
| 12 |
// $title the page title to log |
|
| 13 |
// $data the data to log |
|
| 14 |
public static function logPageView($title, $data) {
|
|
| 15 |
$parameters = JComponentHelper :: getParams('com_openaire');
|
|
| 16 |
$url = $parameters -> get('piwikUrl');
|
|
| 17 |
$siteId = $parameters -> get('piwikSiteId');
|
|
| 18 |
$document = JFactory :: getDocument(); |
|
| 19 |
$document -> addScript(JRoute :: _($url . 'piwik.js')); |
|
| 20 |
$document -> addScriptDeclaration('try{');
|
|
| 21 |
$document -> addScriptDeclaration('var tracker = Piwik.getTracker(\'' . $url . 'piwik.php\', ' . $siteId . ');');
|
|
| 22 |
$document -> addScriptDeclaration('tracker.setDocumentTitle(\''. $title . '\');');
|
|
| 23 |
$document -> addScriptDeclaration('tracker.setCustomVariable(1, \'user\', \'' . JFactory :: getUser() -> email . '\', \'page\');');
|
|
| 24 |
$document -> addScriptDeclaration('tracker.setCustomVariable(2, \'session\', \'' . JFactory :: getSession() -> getId() . '\', \'page\');');
|
|
| 25 |
$document -> addScriptDeclaration('tracker.setCustomVariable(3, \'data\', \'' . substr($data, 0, self :: MAX_DATA) . '\', \'page\');');
|
|
| 26 |
$document -> addScriptDeclaration('tracker.setCustomVariable(4, \'data\', \'' . substr($data, self :: MAX_DATA, 2 * self :: MAX_DATA) . '\', \'page\');');
|
|
| 27 |
$document -> addScriptDeclaration('tracker.setCustomVariable(5, \'data\', \'' . substr($data, 2 * self :: MAX_DATA, 3 * self :: MAX_DATA) . '\', \'page\');');
|
|
| 28 |
$document -> addScriptDeclaration('tracker.trackPageView(\'' . $title . '\');');
|
|
| 29 |
$document -> addScriptDeclaration('}');
|
|
| 30 |
$document -> addScriptDeclaration('catch(e){;}');
|
|
| 31 |
} |
|
| 32 |
} |
|
| 33 |
|
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/organizationhelper.php | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Access denied');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.methods');
|
|
| 6 |
|
|
| 7 |
// This helper formats organizations. |
|
| 8 |
abstract class OrganizationHelper {
|
|
| 9 |
const MAX_PROJECTS = 15; |
|
| 10 |
|
|
| 11 |
// Format an organization. |
|
| 12 |
// $organization the organization to format |
|
| 13 |
// $itemId the item ID to use for internal links |
|
| 14 |
// return a string containing the full HTML for the organization or an empty string if any errors occur |
|
| 15 |
public static function formatOrganization($organization, $itemId) {
|
|
| 16 |
if (($organization == NULL) || (($organization -> name == NULL) && ($organization -> shortName == NULL))) |
|
| 17 |
return ''; |
|
| 18 |
$projects = OrganizationHelper :: _formatProjects($organization -> projects, $itemId); |
|
| 19 |
return '<div class="srchRow"><h4>' . (($organization -> id == NULL) ? '' : ('<a href="' . JRoute :: _('index.php?option=com_openaire&view=organization&Itemid=' . $itemId . '&organizationId=' . $organization -> id) . '">')) . $organization -> name . ((($organization -> name == NULL) || ($organization -> shortName == NULL)) ? '' : ' ') . (($organization -> shortName == NULL) ? '' : ('(' . $organization -> shortName . ')')) . (($organization -> id == NULL) ? '' : '</a>') . '</h4>' . ((($organization -> country) && ($projects == NULL)) ? '' : ('<div class="biblio">' . (($organization -> country == NULL) ? '' : (JText :: _('COUNTRY_') . ' ' . $organization -> country)) . ((($organization -> country == NULL) || ($projects == NULL)) ? '' : '<br />') . $projects . '</div>')) . '</div>';
|
|
| 20 |
} |
|
| 21 |
|
|
| 22 |
public static function _formatProjects($projects, $itemId) {
|
|
| 23 |
$projects = ($projects == NULL) ? NULL : array_filter(array_map(function ($project) use ($itemId) {return OrganizationHelper :: _formatProject($project, $itemId);}, $projects));
|
|
| 24 |
return ($projects == NULL) ? '' : (JText :: _('PROJECTS_') . ' ' . implode(', ', array_slice($projects, 0, OrganizationHelper :: MAX_PROJECTS)) . ((count($projects) > OrganizationHelper :: MAX_PROJECTS) ? ',...' : ''));
|
|
| 25 |
} |
|
| 26 |
|
|
| 27 |
public static function _formatProject($project, $itemId) {
|
|
| 28 |
return (($project -> acronym == NULL) && ($project -> title == NULL)) ? '' : ('<span class="proj">' . (($project -> id == NULL) ? '' : ('<a href="' . JRoute :: _('index.php?option=com_openaire&view=project&Itemid=' . $itemId . '&projectId=' . $project -> id) . '">')) . (($project -> acronym == NULL) ? $project -> title : $project -> acronym) . (($project -> code == NULL) ? '' : (' (' . $project -> code . ')')) . (($project -> id == NULL) ? '' : '</a>') . '</span>');
|
|
| 29 |
} |
|
| 30 |
} |
|
| 31 |
|
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/index.html | ||
|---|---|---|
| 1 |
<!DOCTYPE HTML> |
|
| 2 |
<html> |
|
| 3 |
<head> |
|
| 4 |
<title>OpenAIRE</title> |
|
| 5 |
</head> |
|
| 6 |
<body> |
|
| 7 |
<h1>Access denied</h1> |
|
| 8 |
</body> |
|
| 9 |
</html> |
|
| 10 |
|
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/helpers/paginghelper.php | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Access denied');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.methods');
|
|
| 6 |
|
|
| 7 |
// This helper formats paging. |
|
| 8 |
abstract class PagingHelper {
|
|
| 9 |
|
|
| 10 |
// Format paging. |
|
| 11 |
// $page the current page |
|
| 12 |
// $totalPages the total pages |
|
| 13 |
// $pagingStart the page to start paging from |
|
| 14 |
// $pagingEnd the page to end paging to |
|
| 15 |
// $baseUrl the base URL to use for links |
|
| 16 |
// $fragment the URL fragment to use for links |
|
| 17 |
// return a string containing the full HTML for paging or an empty string if any errors occur |
|
| 18 |
public static function formatPaging($page, $totalPages, $pagingStart, $pagingEnd, $baseUrl, $fragment) {
|
|
| 19 |
// TODO JRoute :: _ keeps decoding urlencoded values, so this is just a hack to cope with this |
|
| 20 |
return '<div class="pages">' . (($page > 1) ? ('<a href="' . JRoute :: _($baseUrl . '1' . $fragment) . '"><<</a><a href="' . JRoute :: _($baseUrl . ($page - 1) . $fragment) . '"><</a>') : '') . implode('', array_map(function ($p) use ($page, $baseUrl, $fragment) {return ($p == $page) ? ('<a class="current">' . $p . '</a>') : ('<a href="' . JRoute :: _($baseUrl . $p . $fragment) . '">' . $p . '</a>');}, range($pagingStart, $pagingEnd))) . (($page < $totalPages) ? ('<a href="' . JRoute :: _($baseUrl . ($page + 1) . $fragment) . '">></a>') : '') . '</div>';
|
|
| 21 |
} |
|
| 22 |
|
|
| 23 |
public static function formatPagingForAjax($page, $totalPages, $pagingStart, $pagingEnd, $baseUrl, $fragment,$source) {
|
|
| 24 |
return '<div class="pages">' . (($page > 1) ? ('<a href="' . JRoute :: _($baseUrl . '1' . $fragment) . '"><<</a>
|
|
| 25 |
<a href="' . JRoute :: _($baseUrl . ($page - 1) . $fragment) . '"><</a>') : '') |
|
| 26 |
. implode('',
|
|
| 27 |
array_map(function ($p) use ($page, $baseUrl, $fragment,$source) |
|
| 28 |
{
|
|
| 29 |
return ($p == $page) ? ('<a class="current">' . $p . '</a>') :
|
|
| 30 |
('<a onclick="gotoPage(\''.$baseUrl .'\',\''. ($p).'\',\'' . ($source) .'\',\''. $fragment.'\');">' . $p . '</a>');
|
|
| 31 |
}, |
|
| 32 |
range($pagingStart, $pagingEnd))) . (($page < $totalPages) ? |
|
| 33 |
('<a onclick="gotoPage(\''.$baseUrl .'\',\'' . ($page + 1) .'\',\'' . ($source) .'\',\''. $fragment.'\');" >></a>') : '') . '</div>';
|
|
| 34 |
// href="' . JRoute :: _($baseUrl . ($page + 1) . $fragment) . '" |
|
| 35 |
} |
|
| 36 |
} |
|
| 37 |
|
|
| modules/uoa-joomla/trunk/joomla-3.4/com_openaire/site/models/claim.php | ||
|---|---|---|
| 1 |
<?php |
|
| 2 |
|
|
| 3 |
defined('_JEXEC') or die('Access denied');
|
|
| 4 |
|
|
| 5 |
jimport('joomla.application.component.model');
|
|
| 6 |
jimport('joomla.http.http');
|
|
| 7 |
jimport('joomla.log.log');
|
|
| 8 |
|
|
| 9 |
$GLOBALS['THRIFT_ROOT'] = dirname(__FILE__) . DS . 'thrift'; |
|
| 10 |
require_once($GLOBALS['THRIFT_ROOT'] . DS . 'Thrift.php'); |
|
| 11 |
require_once($GLOBALS['THRIFT_ROOT'] . DS . 'protocol' . DS . 'TBinaryProtocol.php'); |
|
| 12 |
require_once($GLOBALS['THRIFT_ROOT'] . DS . 'transport' . DS . 'TSocket.php'); |
|
| 13 |
require_once($GLOBALS['THRIFT_ROOT'] . DS . 'transport' . DS . 'TBufferedTransport.php'); |
|
| 14 |
require_once($GLOBALS['THRIFT_ROOT'] . DS . 'packages' . DS . 'OpenAIREConnector' . DS . 'OpenAIREConnector.php'); |
|
| 15 |
|
|
| 16 |
|
|
| 17 |
// This model manages claims. |
|
| 18 |
class OpenAireModelClaim extends JModelItem {
|
|
| 19 |
const SELECTED_PROJECTS = 'selectedProjects'; |
|
| 20 |
const SELECTED_CONCEPTS = 'selectedConcepts'; |
|
| 21 |
const SELECTED_PUBLICATIONS = 'selectedPublications'; |
|
| 22 |
const SEARCH_DOI_CACHE_ID = 'search.doi'; |
|
| 23 |
const SEARCH_DATASET_CACHE_ID = 'search.datacite'; |
|
| 24 |
const SEARCH_ORCID_CACHE_ID = 'search.orcid'; |
|
| 25 |
const CLAIMED_PUBLICATIONS_CACHE_ID = 'claimed.publications'; |
|
| 26 |
const CACHE_GROUP = 'openaire.claim'; |
|
| 27 |
const CROSSREF_URL = 'http://www.crossref.org/openurl?noredirect=true&pid=antleb%40di.uoa.gr&format=unixref&id='; |
|
| 28 |
const CROSSREF_API_DOI = 'http://api.crossref.org/works/'; |
|
| 29 |
const CROSSREF_API_KEYWORD = 'http://api.crossref.org/works?query='; |
|
| 30 |
const DOI_SCHEME = 'doi:'; |
|
| 31 |
const DATACITE_URL = 'http://data.datacite.org/application/rdf+xml/'; |
|
| 32 |
const DATACITE_URL_KEYWORD = 'http://search.datacite.org/api?q='; |
|
| 33 |
const DATACITE_URL_KEYWORD_REST = '&fl=doi,title,creator,publisher,created&wt=xml'; |
|
| 34 |
const DOI_URL = 'http://dx.doi.org/'; |
|
| 35 |
const ORCID_URL_PREFIX = 'http://pub.orcid.org/'; |
|
| 36 |
const ORCID_URL_PUBLICATIONS_SUFFIX = '/orcid-works'; |
|
| 37 |
const ORCID_URL_AUTHOR_SUFFIX = '/orcid-bio'; |
|
| 38 |
const HTTP_OK = 200; |
|
| 39 |
const HTTP_NOT_FOUND = 404; |
|
| 40 |
const DOI = 'doi'; |
|
| 41 |
const ORCID = 'orcid'; |
|
| 42 |
const DATACITE = 'datacite'; |
|
| 43 |
const RELATION = 'rels2actions'; |
|
| 44 |
const DMF = 'dmf2actions'; |
|
| 45 |
const UNDETERMINED = 'Undetermined'; |
|
| 46 |
const LOG = 'openaire'; |
|
| 47 |
//claim modes |
|
| 48 |
const CLAIM = 'claim'; |
|
| 49 |
const CLAIMINLINE = 'claiminline'; |
|
| 50 |
const CLAIMINLINE2 = 'claiminline2'; |
|
| 51 |
|
|
| 52 |
private $cache; |
|
| 53 |
private $http; |
|
| 54 |
private $transport; |
|
| 55 |
private $client; |
|
| 56 |
|
|
| 57 |
// Construct a new OpenAireModelClaim. |
|
| 58 |
// $configuration the configuration to use |
|
| 59 |
public function __construct($configuration) {
|
|
| 60 |
parent :: __construct($configuration); |
|
| 61 |
$this -> cache = JCache :: getInstance(); |
|
| 62 |
$this -> http = new JHttp(); |
|
| 63 |
$parameters = JComponentHelper :: getParams('com_openaire');
|
|
| 64 |
$socket = new TSocket($parameters -> get('thriftHost'), intval($parameters -> get('thriftPort')));
|
|
| 65 |
$socket -> setRecvTimeout(intval($parameters -> get('thriftTimeout')));
|
|
| 66 |
$this -> transport = new TBufferedTransport($socket); |
|
| 67 |
$this -> client = new OpenAIREConnectorClient(new TBinaryProtocol($this -> transport)); |
|
| 68 |
$this -> transport -> open(); |
|
| 69 |
} |
|
| 70 |
|
|
| 71 |
// Close Thrift transport |
|
| 72 |
public function __destruct() {
|
|
| 73 |
$this -> transport -> close(); |
|
| 74 |
} |
|
| 75 |
|
|
| 76 |
// Get the selected projects stored in session. |
|
| 77 |
// return the selected projects (array) or NULL if any errors occur |
|
| 78 |
public function getSelectedProjects($suffix = self :: CLAIM) {
|
|
| 79 |
try {
|
|
| 80 |
$projects = unserialize(JFactory :: getSession() -> get(self :: SELECTED_PROJECTS . $suffix, serialize(array()))); |
|
| 81 |
JLog :: add('Retrieved ' . count($projects) . ' selected projects', JLog :: INFO, self :: LOG);
|
|
| 82 |
return $projects; |
|
| 83 |
} catch (Exception $e) {
|
|
| 84 |
JLog :: add('Error retrieving selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 85 |
return NULL; |
|
| 86 |
} |
|
| 87 |
} |
|
| 88 |
|
|
| 89 |
// Add a project to the selected projects stored in session. |
|
| 90 |
// $project the project to add |
|
| 91 |
public function addSelectedProject($project, $suffix = self :: CLAIM) {
|
|
| 92 |
try {
|
|
| 93 |
$session = JFactory :: getSession(); |
|
| 94 |
$projects = unserialize($session -> get(self :: SELECTED_PROJECTS . $suffix, serialize(array()))); |
|
| 95 |
$projects[$project -> id] = $project; |
|
| 96 |
$session -> set(self :: SELECTED_PROJECTS . $suffix, serialize($projects)); |
|
| 97 |
JLog :: add('Added project ' . $project -> id . ' to selected projects', JLog :: INFO, self :: LOG);
|
|
| 98 |
} catch (Exception $e) {
|
|
| 99 |
JLog :: add('Error adding project ' . $project -> id . ' to selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 100 |
} |
|
| 101 |
} |
|
| 102 |
|
|
| 103 |
// Remove a project from the selected projects stored in session. |
|
| 104 |
// $projectId the identifier of the project to remove |
|
| 105 |
public function removeSelectedProject($projectId, $suffix = self :: CLAIM) {
|
|
| 106 |
try {
|
|
| 107 |
$session = JFactory :: getSession(); |
|
| 108 |
$projects = unserialize($session -> get(self :: SELECTED_PROJECTS . $suffix, serialize(array()))); |
|
| 109 |
unset($projects[$projectId]); |
|
| 110 |
$session -> set(self :: SELECTED_PROJECTS . $suffix, serialize($projects)); |
|
| 111 |
JLog :: add('Removed project ' . $projectId . ' from selected projects', JLog :: INFO, self :: LOG);
|
|
| 112 |
} catch (Exception $e) {
|
|
| 113 |
JLog :: add('Error removing project ' . $projectId . ' from selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 114 |
} |
|
| 115 |
} |
|
| 116 |
|
|
| 117 |
//empties selected concepts |
|
| 118 |
public function emptySelectedProjects($suffix = self :: CLAIM) {
|
|
| 119 |
try {
|
|
| 120 |
$session = JFactory :: getSession(); |
|
| 121 |
$session -> set(self :: SELECTED_PROJECTS . $suffix, serialize(array())); |
|
| 122 |
} catch (Exception $e) {
|
|
| 123 |
; |
|
| 124 |
} |
|
| 125 |
} |
|
| 126 |
//empties selected publications |
|
| 127 |
public function emptySelectedPublications($suffix = self :: CLAIM) {
|
|
| 128 |
try {
|
|
| 129 |
$session = JFactory :: getSession(); |
|
| 130 |
$session -> set(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array())); |
|
| 131 |
} catch (Exception $e) {
|
|
| 132 |
; |
|
| 133 |
} |
|
| 134 |
} |
|
| 135 |
//Get concept using id |
|
| 136 |
//returns concept object or error |
|
| 137 |
public function getConcept($conceptId, $withChildren = false){
|
|
| 138 |
$contexts = $this->getContexts(); |
|
| 139 |
|
|
| 140 |
$concept = new JObject(); |
|
| 141 |
$concept->context = new JObject(); |
|
| 142 |
$concept->category = new JObject(); |
|
| 143 |
$concept->concepts = array(); |
|
| 144 |
$concept->id = $conceptId; |
|
| 145 |
|
|
| 146 |
$data = explode("::", $conceptId);
|
|
| 147 |
if (count($data) > 1){
|
|
| 148 |
list ($context, $category) = $data; |
|
| 149 |
$category = $context . "::" . $category; |
|
| 150 |
} |
|
| 151 |
else{
|
|
| 152 |
$context = $data[0]; |
|
| 153 |
$category = null; |
|
| 154 |
} |
|
| 155 |
if (!isset($contexts[$context])) |
|
| 156 |
return NULL; |
|
| 157 |
|
|
| 158 |
$concept->context->id = $context; |
|
| 159 |
$concept->context->name = $contexts[$context]->name; |
|
| 160 |
if ($category == null){
|
|
| 161 |
$concept->category = null; |
|
| 162 |
$concept->path = $this->getConceptPath($concept); |
|
| 163 |
return $concept; |
|
| 164 |
} |
|
| 165 |
if (!isset($contexts[$context]->categories[$category])) |
|
| 166 |
return NULL; |
|
| 167 |
|
|
| 168 |
$concept->category->id = $category; |
|
| 169 |
$concept->category->name = $contexts[$context]->categories[$category]->name; |
|
| 170 |
|
|
| 171 |
$concepts = $contexts[$context]->categories[$category]->concepts; |
|
| 172 |
$conceptId2 = $category; |
|
| 173 |
for ($i = 2; $i < count($data); $i++){
|
|
| 174 |
$conceptId2 = $conceptId2 . "::" . $data[$i]; |
|
| 175 |
$concept_s = new JObject(); |
|
| 176 |
$concept_s -> id = $conceptId2; |
|
| 177 |
$concept_s -> name = $concepts[$conceptId2] -> name; |
|
| 178 |
$concepts = isset($concepts[$conceptId2] -> concepts)?$concepts[$conceptId2] -> concepts:array(); |
|
| 179 |
$concept_s -> concepts = $concepts; |
|
| 180 |
$concept -> concepts[] = $concept_s; |
|
| 181 |
} |
|
| 182 |
|
|
| 183 |
$concept->path = $this->getConceptPath($concept); |
|
| 184 |
return $concept; |
|
| 185 |
} |
|
| 186 |
|
|
| 187 |
//Get concept using id |
|
| 188 |
//returns concept object or error |
|
| 189 |
public function getConceptPath($concept){
|
|
| 190 |
$path = $concept->context->name . ($concept->category != null?" > " . $concept->category->name:""); |
|
| 191 |
$concept_parts = array(); |
|
| 192 |
foreach ($concept -> concepts as $concept_part){
|
|
| 193 |
$concept_parts[] = $concept_part -> name; |
|
| 194 |
} |
|
| 195 |
$path = $path . (count($concept_parts)?" > " . implode(" > ", $concept_parts):"");
|
|
| 196 |
return $path; |
|
| 197 |
} |
|
| 198 |
|
|
| 199 |
// Get the selected concepts stored in session. |
|
| 200 |
// return the selected concepts (array) or NULL if any errors occur |
|
| 201 |
public function getSelectedConcepts($suffix = self :: CLAIM) {
|
|
| 202 |
try {
|
|
| 203 |
$concepts = unserialize(JFactory :: getSession() -> get(self :: SELECTED_CONCEPTS . $suffix, serialize(array()))); |
|
| 204 |
JLog :: add('Retrieved ' . count($concepts) . ' selected concepts', JLog :: INFO, self :: LOG);
|
|
| 205 |
return $concepts; |
|
| 206 |
} catch (Exception $e) {
|
|
| 207 |
JLog :: add('Error retrieving selected concepts: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 208 |
return NULL; |
|
| 209 |
} |
|
| 210 |
} |
|
| 211 |
|
|
| 212 |
// Add a project to the selected projects stored in session. |
|
| 213 |
// $project the project to add |
|
| 214 |
public function addSelectedConcept($concept, $suffix = self :: CLAIM) {
|
|
| 215 |
try {
|
|
| 216 |
$session = JFactory :: getSession(); |
|
| 217 |
$concepts = unserialize($session -> get(self :: SELECTED_CONCEPTS . $suffix, serialize(array()))); |
|
| 218 |
$concepts[$concept -> id] = $concept; |
|
| 219 |
$session -> set(self :: SELECTED_CONCEPTS . $suffix, serialize($concepts)); |
|
| 220 |
JLog :: add('Added project ' . $concept -> id . ' to selected projects', JLog :: INFO, self :: LOG);
|
|
| 221 |
} catch (Exception $e) {
|
|
| 222 |
JLog :: add('Error adding project ' . $concept -> id . ' to selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 223 |
} |
|
| 224 |
} |
|
| 225 |
|
|
| 226 |
// Remove a project from the selected projects stored in session. |
|
| 227 |
// $projectId the identifier of the project to remove |
|
| 228 |
public function removeSelectedConcept($conceptId, $suffix = self :: CLAIM) {
|
|
| 229 |
try {
|
|
| 230 |
$session = JFactory :: getSession(); |
|
| 231 |
$concepts = unserialize($session -> get(self :: SELECTED_CONCEPTS . $suffix, serialize(array()))); |
|
| 232 |
unset($concepts[$conceptId]); |
|
| 233 |
$session -> set(self :: SELECTED_CONCEPTS . $suffix, serialize($concepts)); |
|
| 234 |
JLog :: add('Removed project ' . $conceptId . ' from selected projects', JLog :: INFO, self :: LOG);
|
|
| 235 |
} catch (Exception $e) {
|
|
| 236 |
JLog :: add('Error removing project ' . $conceptId . ' from selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 237 |
} |
|
| 238 |
} |
|
| 239 |
|
|
| 240 |
//empties selected concepts |
|
| 241 |
public function emptySelectedConcepts($suffix = self :: CLAIM) {
|
|
| 242 |
try {
|
|
| 243 |
$session = JFactory :: getSession(); |
|
| 244 |
$session -> set(self :: SELECTED_CONCEPTS . $suffix, serialize(array())); |
|
| 245 |
} catch (Exception $e) {
|
|
| 246 |
; |
|
| 247 |
} |
|
| 248 |
} |
|
| 249 |
|
|
| 250 |
|
|
| 251 |
// Get the selected publications stored in session. |
|
| 252 |
// return the selected publications (arary) or NULL if any errors occur |
|
| 253 |
public function getSelectedPublications($suffix = self :: CLAIM) {
|
|
| 254 |
try {
|
|
| 255 |
$publications = unserialize(JFactory :: getSession() -> get(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array()))); |
|
| 256 |
JLog :: add('Retrieved ' . count($publications) . ' selected publications', JLog :: INFO, self :: LOG);
|
|
| 257 |
return $publications; |
|
| 258 |
} catch (Exception $e) {
|
|
| 259 |
JLog :: add('Error retrieving selected publications: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 260 |
return NULL; |
|
| 261 |
} |
|
| 262 |
} |
|
| 263 |
|
|
| 264 |
// Add a publication to the selected publications stored in session. |
|
| 265 |
// $publication the publication to add |
|
| 266 |
public function addSelectedPublication($publication, $suffix = self :: CLAIM) {
|
|
| 267 |
try {
|
|
| 268 |
$session = JFactory :: getSession(); |
|
| 269 |
$publications = unserialize($session -> get(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array()))); |
|
| 270 |
$publications[$publication -> source . $publication -> id] = $publication; |
|
| 271 |
$session -> set(self :: SELECTED_PUBLICATIONS . $suffix, serialize($publications)); |
|
| 272 |
JLog :: add('Added ' . $publication -> source . ' publication ' . $publication -> id . ' to selected publications', JLog :: INFO, self :: LOG);
|
|
| 273 |
} catch (Exception $e) {
|
|
| 274 |
JLog :: add('Error adding ' . $publication -> source . ' publication ' . $publication -> id . ' to selected publications: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 275 |
} |
|
| 276 |
} |
|
| 277 |
|
|
| 278 |
// Remove a publication from the selected publications stored in session. |
|
| 279 |
// $source the source of the publication to remove |
|
| 280 |
// $publicationId the identifier of the publication to remove |
|
| 281 |
public function removeSelectedPublication($source, $publicationId, $suffix = self :: CLAIM) {
|
|
| 282 |
try {
|
|
| 283 |
$session = JFactory :: getSession(); |
|
| 284 |
$publications = unserialize($session -> get(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array()))); |
|
| 285 |
unset($publications[$source . $publicationId]); |
|
| 286 |
$session -> set(self :: SELECTED_PUBLICATIONS. $suffix, serialize($publications)); |
|
| 287 |
JLog :: add('Removed ' . $source . ' publication ' . $publicationId . ' from selected publications', JLog :: INFO, self :: LOG);
|
|
| 288 |
} catch (Exception $e) {
|
|
| 289 |
JLog :: add('Error removing ' . $source . ' publication ' . $publicationId . ' from selected publications: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 290 |
} |
|
| 291 |
} |
|
| 292 |
|
|
| 293 |
// Claim all the selected publications. |
|
| 294 |
// $user the user to claim publications for |
|
| 295 |
public function claimSelectedPublications($user, $mode = self :: CLAIM, $activePublication = NULL, $suffix = "", $activePublicationType = "publication") {
|
|
| 296 |
try {
|
|
| 297 |
$projects = array_map(function ($project) {
|
|
| 298 |
$project2 = new Project(); |
|
| 299 |
$project2 -> projectId = $project -> id; |
|
| 300 |
$project2 -> type = NULL; |
|
| 301 |
return $project2;}, $this -> getSelectedProjects($mode.$suffix)); |
|
| 302 |
$concepts = array_map(function ($concept) {return $concept -> id;}, $this -> getSelectedConcepts($mode.$suffix));
|
|
| 303 |
if ($mode != self :: CLAIMINLINE){
|
|
| 304 |
$selectedPublications = $this -> getSelectedPublications($mode.$suffix); |
|
| 305 |
} |
|
| 306 |
else {
|
|
| 307 |
$selectedPublications = array($activePublication); |
|
| 308 |
} |
|
| 309 |
$dcSource = NULL; |
|
| 310 |
$subjects = array(); |
|
| 311 |
$category = NULL; |
|
| 312 |
|
|
| 313 |
foreach ($selectedPublications as $publication) {
|
|
| 314 |
$authors = array_map(function ($author) {
|
|
| 315 |
$a = array(); |
|
| 316 |
$a['id'] = $author -> id; |
|
| 317 |
$a['firstName'] = $author -> firstName; |
|
| 318 |
$a['lastName'] = $author -> lastName; |
|
| 319 |
if (($author -> lastName == NULL) && ($author -> fullName != NULL)) |
|
| 320 |
$a['lastName'] = $author -> fullName; |
|
| 321 |
return new Author($a); |
|
| 322 |
}, $publication -> authors); |
|
| 323 |
$doi = (($publication -> source == self :: DOI) || ($publication -> source == self :: DATACITE)) ? $publication -> id : NULL; |
|
| 324 |
if ($mode != self :: CLAIMINLINE and $publication -> source != "openaire"){
|
|
| 325 |
$docId = $this -> client -> insertDocument($publication -> id, $publication -> source, $publication -> title, $publication -> description, isset($publication -> license)?$publication -> license:"", $publication -> embargoEndDate, $authors, $publication -> url, $dcSource, $user -> email, $subjects, $publication -> year, $publication -> publisher, $publication -> language, $category, $doi); |
|
| 326 |
}else{
|
|
| 327 |
|
|
| 328 |
$docId = $publication->id; |
|
| 329 |
} |
|
| 330 |
foreach ($concepts as $concept) |
|
| 331 |
$this -> client -> insertConcept($docId, $publication -> source, $concept, $user -> email); |
|
| 332 |
foreach ($projects as $project){
|
|
| 333 |
$this -> client -> insertProjectRelation($docId, $publication -> source, $project, $user -> email); |
|
| 334 |
} |
|
| 335 |
if ($activePublication != NULL && $mode === self::CLAIMINLINE2){
|
|
| 336 |
$this -> client -> insertResultRelation($activePublication -> id, $activePublicationType, |
|
| 337 |
$activePublication -> source, $docId, $publication -> claim_type, $user -> email); |
|
| 338 |
} |
|
| 339 |
} |
|
| 340 |
if ($this -> cache -> getCaching()){
|
|
| 341 |
$cacheId = self :: CLAIMED_PUBLICATIONS_CACHE_ID . '.' . $user -> username; |
|
| 342 |
$this -> cache ->remove($cacheId); |
|
| 343 |
} |
|
| 344 |
JLog :: add('Claimed ' . count($selectedPublications) . ' publications (user: ' . $user -> username . ')', JLog :: INFO, self :: LOG);
|
|
| 345 |
return true; |
|
| 346 |
} catch (Exception $e) {
|
|
| 347 |
JLog :: add('Error claiming selected publications (user: ' . $user -> username . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 348 |
return false; |
|
| 349 |
} |
|
| 350 |
} |
|
| 351 |
|
|
| 352 |
// Get the publications claimed by a user using caching if enabled. |
|
| 353 |
// $user the user whose claimed publications to retrieve |
|
| 354 |
// return an array of publications |
|
| 355 |
public function getClaimedPublications($user) {
|
|
| 356 |
/* if ($this -> cache -> getCaching()) {
|
|
| 357 |
$cacheId = self :: CLAIMED_PUBLICATIONS_CACHE_ID . '.' . $user -> username; |
|
| 358 |
$publications = $this -> cache -> get($cacheId, self :: CACHE_GROUP); |
|
| 359 |
if ($publications === FALSE) {
|
|
| 360 |
$publications = $this -> _getClaimedPublications($user); |
|
| 361 |
if ($publications !== NULL) |
|
| 362 |
$this -> cache -> store($publications, $cacheId, self :: CACHE_GROUP); |
|
| 363 |
} |
|
| 364 |
} else |
|
| 365 |
*/ $publications = $this -> _getClaimedPublications($user); |
|
| 366 |
return $publications; |
|
| 367 |
} |
|
| 368 |
|
|
| 369 |
// Get the publications claimed by a user using caching if enabled. |
|
| 370 |
// $user the user whose claimed publications to retrieve |
|
| 371 |
// return an array of publications |
|
| 372 |
public function getAllClaimedPublications($from, $to) {
|
|
| 373 |
/*if ($this -> cache -> getCaching()) {
|
|
| 374 |
$cacheId = self :: CLAIMED_PUBLICATIONS_CACHE_ID . '.' . $from . "." . $to; |
|
| 375 |
$publications = $this -> cache -> get($cacheId, self :: CACHE_GROUP); |
|
| 376 |
if ($publications === FALSE) {
|
|
| 377 |
$publications = $this -> _getAllClaimedPublications($from, $to); |
|
| 378 |
if ($publications !== NULL) |
|
| 379 |
$this -> cache -> store($publications, $cacheId, self :: CACHE_GROUP); |
|
| 380 |
} |
|
| 381 |
} else*/ |
|
| 382 |
$publications = $this -> _getAllClaimedPublicationsExtended($from, $to); |
|
| 383 |
return $publications; |
|
| 384 |
} |
|
| 385 |
|
|
| 386 |
// Search for a publication DOI using caching if enabled. |
|
| 387 |
// $doi the publication DOI to search for |
|
| 388 |
// return an array of results |
|
| 389 |
public function searchDOI($doi, $page, $size) {
|
|
| 390 |
if ($this -> cache -> getCaching()) {
|
|
| 391 |
$cacheId = self :: SEARCH_DOI_CACHE_ID . '.' . $doi; |
|
| 392 |
$results = $this -> cache -> get($cacheId, self :: CACHE_GROUP); |
|
| 393 |
if ($results === FALSE) {
|
|
| 394 |
$results = $this -> _searchDOI($doi, $page, $size); |
|
| 395 |
if ($results !== NULL) |
|
| 396 |
$this -> cache -> store($results, $cacheId, self :: CACHE_GROUP); |
|
| 397 |
} |
|
| 398 |
} else |
|
| 399 |
$results = $this -> _searchDOI($doi, $page, $size); |
|
| 400 |
return $results; |
|
| 401 |
} |
|
| 402 |
|
|
| 403 |
// Search for a dataset DOI using caching if enabled. |
|
| 404 |
// $doi the dataset DOI to search for |
|
| 405 |
// return a result (object) containing publications and total |
|
| 406 |
public function searchDataCite($doi, $page, $size) {
|
|
| 407 |
if ($this -> cache -> getCaching()) {
|
|
| 408 |
$cacheId = self :: SEARCH_DATASET_CACHE_ID . '.' . $doi; |
|
| 409 |
$results = $this -> cache -> get($cacheId, self :: CACHE_GROUP); |
|
| 410 |
if ($results === FALSE) {
|
|
| 411 |
$results = $this -> _searchDataCite($doi, $page, $size); |
|
| 412 |
if ($results !== NULL) |
|
| 413 |
$this -> cache -> store($results, $cacheId, self :: CACHE_GROUP); |
|
| 414 |
} |
|
| 415 |
} else |
|
| 416 |
$results = $this -> _searchDataCite($doi, $page, $size); |
|
| 417 |
return $results; |
|
| 418 |
} |
|
| 419 |
|
|
| 420 |
// Search for publications in ORCID using caching if enabled. |
|
| 421 |
// $doi the ORCID id to search for |
|
| 422 |
// $page the result page to retrieve |
|
| 423 |
// $size the result page size to use |
|
| 424 |
// return a result (object) containing datasets and total |
|
| 425 |
public function searchORCID($orcid, $page, $size) {
|
|
| 426 |
if ($this -> cache -> getCaching()) {
|
|
| 427 |
$cacheId = self :: SEARCH_ORCID_CACHE_ID . '.' . $orcid . '.' . $page . '.' . $size; |
|
| 428 |
$results = $this -> cache -> get($cacheId, self :: CACHE_GROUP); |
|
| 429 |
if ($results === FALSE) {
|
|
| 430 |
$results = $this -> _searchORCID($orcid, $page, $size); |
|
| 431 |
if ($results !== NULL) |
|
| 432 |
$this -> cache -> store($results, $cacheId, self :: CACHE_GROUP); |
|
| 433 |
} |
|
| 434 |
} else |
|
| 435 |
$results = $this -> _searchORCID($orcid, $page, $size); |
|
| 436 |
|
|
| 437 |
return $results; |
|
| 438 |
} |
|
| 439 |
|
|
| 440 |
// Get the publications claimed by a user. |
|
| 441 |
// $user the user whose claimed publications to retrieve |
|
| 442 |
// return an array of publications or NULL if any errors occur |
|
| 443 |
private function _getClaimedPublications($user) {
|
|
| 444 |
try {
|
|
| 445 |
$locale = JFactory :: getLanguage()->getTag(); |
|
| 446 |
$claimedPublications = array(); |
|
| 447 |
$claimedPublicationsGrouped = array(); |
|
| 448 |
$time = microtime(TRUE); |
|
| 449 |
$claims = $this -> client -> getClaimedPublications($user -> email); |
|
| 450 |
foreach ($claims as $claim){
|
|
| 451 |
$parsedClaim = $this -> parseClaimedPublication($claim); |
|
| 452 |
if ($parsedClaim == null) |
|
| 453 |
continue; |
|
| 454 |
$claimedPublications[] = $parsedClaim; |
|
| 455 |
} |
|
| 456 |
$resultsToGet = array(); |
|
| 457 |
$projectsToGet = array(); |
|
| 458 |
$claimedDocuments = array(); |
|
| 459 |
foreach ($claimedPublications as $claimedPublication){
|
|
| 460 |
if ($claimedPublication -> publication != null and $claimedPublication -> publication -> id != null) |
|
| 461 |
$claimedDocuments[$claimedPublication->publicationId] = $claimedPublication -> publication; |
|
| 462 |
if ($claimedPublication -> projectId !== null){
|
|
| 463 |
$projectsToGet[] = $claimedPublication -> projectId; |
|
| 464 |
} |
|
| 465 |
if ($claimedPublication -> targetPublicationId !== null){
|
|
| 466 |
$resultsToGet[] = $claimedPublication -> targetPublicationId; |
|
| 467 |
} |
|
| 468 |
if ($claimedPublication -> targetDatasetId !== null){
|
|
| 469 |
$resultsToGet[] = $claimedPublication -> targetDatasetId; |
|
| 470 |
} |
|
| 471 |
if (($claimedPublication -> publication == null || ($claimedPublication -> publication != null and $claimedPublication -> publication -> id == null))){
|
|
| 472 |
$resultsToGet[] = $claimedPublication -> publicationId; |
|
| 473 |
} |
|
| 474 |
if ($claimedPublication -> publication == null && $claimedPublication -> type == "dataset"){
|
|
| 475 |
$resultsToGet[] = $claimedPublication -> publicationId; |
|
| 476 |
} |
|
| 477 |
} |
|
| 478 |
$resultsToGet = array_unique($resultsToGet); |
|
| 479 |
$projectsToGet = array_unique($projectsToGet); |
|
| 480 |
$searchModel = new OpenAireModelSearch(); |
|
| 481 |
$results = $searchModel->getResults($resultsToGet, $locale); |
|
| 482 |
$projects = $searchModel->getProjects($projectsToGet, $locale); |
|
| 483 |
$keydResults = array(); |
|
| 484 |
$keydProjects = array(); |
|
| 485 |
foreach ($results as $result) |
|
| 486 |
$keydResults[$result->id] = $result; |
|
| 487 |
foreach ($projects as $project) |
|
| 488 |
$keydProjects[$project->id] = $project; |
|
| 489 |
|
|
| 490 |
foreach ($claimedPublications as $claimedPublication){
|
|
| 491 |
if (!isset($claimedPublicationsGrouped[$claimedPublication -> publicationId])){
|
|
| 492 |
if ($claimedPublication -> publication == null || $claimedPublication -> publication -> id == null){
|
|
| 493 |
$publication = isset($keydResults[$claimedPublication -> publicationId])?$keydResults[$claimedPublication -> publicationId]:null; |
|
| 494 |
} |
|
| 495 |
else{
|
|
| 496 |
$publication = $claimedPublication -> publication; |
|
| 497 |
} |
|
| 498 |
if ($publication == null || $publication -> id == null) |
|
| 499 |
continue; |
|
| 500 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] = new stdClass(); |
|
| 501 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publicationId = $claimedPublication -> publicationId; |
|
| 502 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date = $claimedPublication -> date; |
|
| 503 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publication = $publication; |
|
| 504 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publications = array(); |
|
| 505 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> datasets = array(); |
|
| 506 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> projects = array(); |
|
| 507 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts = array(); |
|
| 508 |
} |
|
| 509 |
if ($claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date < $claimedPublication -> date) |
|
| 510 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date = $claimedPublication -> date; |
|
| 511 |
if ($claimedPublication -> publication != null){
|
|
| 512 |
$claimedConcepts = array(); |
|
| 513 |
foreach ($claimedPublication -> publication -> concepts as $concept){
|
|
| 514 |
$concept = $this->getConcept($concept); |
|
| 515 |
$claimedConcept = new stdClass(); |
|
| 516 |
$claimedConcept->id = $concept->id; |
|
| 517 |
$claimedConcept->title = $concept->path; |
|
| 518 |
$claimedConcept->date = $claimedPublication->date; |
|
| 519 |
$claimedConcepts[] = $claimedConcept; |
|
| 520 |
} |
|
| 521 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts = array_merge($claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts, $claimedConcepts); |
|
| 522 |
} |
|
| 523 |
if ($claimedPublication -> targetPublicationId !== null){
|
|
| 524 |
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetPublicationId ])?$keydResults[$claimedPublication -> targetPublicationId ]->title:null; |
|
| 525 |
if ($claimedPublication->title == null){
|
|
| 526 |
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null; |
|
| 527 |
} |
|
| 528 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publications[] = $claimedPublication; |
|
| 529 |
} |
|
| 530 |
if ($claimedPublication -> targetDatasetId !== null){
|
|
| 531 |
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetDatasetId ])?$keydResults[$claimedPublication -> targetDatasetId ]->title:null; |
|
| 532 |
if ($claimedPublication->title == null){
|
|
| 533 |
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null; |
|
| 534 |
} |
|
| 535 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> datasets[] = $claimedPublication; |
|
| 536 |
} |
|
| 537 |
if ($claimedPublication -> projectId !== null){
|
|
| 538 |
$claimedPublication->title = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->title:null; |
|
| 539 |
$claimedPublication->acronym = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->acronym:null; |
|
| 540 |
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> projects[] = $claimedPublication; |
|
| 541 |
|
|
| 542 |
} |
|
| 543 |
} |
|
| 544 |
JLog :: add('Retrieved ' . count($claimedPublications) . ' claimed publications (user: ' . $user -> username . ') in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
| 545 |
return $claimedPublicationsGrouped; |
|
| 546 |
} catch (Exception $e) {
|
|
| 547 |
JLog :: add('Error retrieving claimed publications (user: ' . $user -> username . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 548 |
return NULL; |
|
| 549 |
} |
|
| 550 |
} |
|
| 551 |
public function _getAllClaimedPublications($from, $to) {
|
|
| 552 |
try {
|
|
| 553 |
// submit the docs |
|
| 554 |
$claimedPublications = array(); |
|
| 555 |
$time1 = strtotime(str_replace("/", "-", $from)) * 1000;
|
|
| 556 |
$time2 = strtotime(str_replace("/", "-", $to)) * 1000;
|
|
| 557 |
$list = $this->client ->getAllClaimedPublications($time1, $time2); |
|
| 558 |
foreach ($list as $claim){
|
|
| 559 |
$claimedPublications[] = $this -> parseClaimedPublication($claim); |
|
| 560 |
} |
|
| 561 |
} |
|
| 562 |
catch (Exception $e) {
|
|
| 563 |
JLog :: add('Error retrieving all claims (from: ' . $from . ', to: '. $to .'): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 564 |
return NULL; |
|
| 565 |
} |
|
| 566 |
return $claimedPublications; |
|
| 567 |
} |
|
| 568 |
// Get the publications claimed |
|
| 569 |
// return an array of publications or NULL if any errors occur |
|
| 570 |
private function _getAllClaimedPublicationsExtended($from, $to) {
|
|
| 571 |
try {
|
|
| 572 |
$locale = JFactory :: getLanguage()->getTag(); |
|
| 573 |
$claimedPublications = array(); |
|
| 574 |
$claimedPublicationsExtended = array(); |
|
| 575 |
$time = microtime(TRUE); |
|
| 576 |
$time1 = strtotime(str_replace("/", "-", $from)) * 1000;
|
|
| 577 |
$time2 = strtotime(str_replace("/", "-", $to)) * 1000;
|
|
| 578 |
$claims = $this->client ->getAllClaimedPublications($time1, $time2); |
|
| 579 |
foreach ($claims as $claim){
|
|
| 580 |
$parsedClaim = $this -> parseClaimedPublication($claim); |
|
| 581 |
if ($parsedClaim == null) |
|
| 582 |
continue; |
|
| 583 |
$claimedPublications[] = $parsedClaim; |
|
| 584 |
} |
|
| 585 |
$resultsToGet = array(); |
|
| 586 |
$projectsToGet = array(); |
|
| 587 |
$claimedDocuments = array(); |
|
| 588 |
foreach ($claimedPublications as $claimedPublication){
|
|
| 589 |
if ($claimedPublication -> publication != null and $claimedPublication -> publication -> id != null) |
|
| 590 |
$claimedDocuments[$claimedPublication->publicationId] = $claimedPublication -> publication; |
|
| 591 |
if ($claimedPublication -> projectId !== null){
|
|
| 592 |
$projectsToGet[] = $claimedPublication -> projectId; |
|
| 593 |
} |
|
| 594 |
if ($claimedPublication -> targetPublicationId !== null){
|
|
| 595 |
$resultsToGet[] = $claimedPublication -> targetPublicationId; |
|
| 596 |
} |
|
| 597 |
if ($claimedPublication -> targetDatasetId !== null){
|
|
| 598 |
$resultsToGet[] = $claimedPublication -> targetDatasetId; |
|
| 599 |
} |
|
| 600 |
if (($claimedPublication -> publication == null || ($claimedPublication -> publication != null and $claimedPublication -> publication -> id == null))){
|
|
| 601 |
$resultsToGet[] = $claimedPublication -> publicationId; |
|
| 602 |
} |
|
| 603 |
if ($claimedPublication -> publication == null && $claimedPublication -> type == "dataset"){
|
|
| 604 |
$resultsToGet[] = $claimedPublication -> publicationId; |
|
| 605 |
} |
|
| 606 |
} |
|
| 607 |
$resultsToGet = array_unique($resultsToGet); |
|
| 608 |
$projectsToGet = array_unique($projectsToGet); |
|
| 609 |
$searchModel = new OpenAireModelSearch(); |
|
| 610 |
$results = $searchModel->getResults($resultsToGet, $locale); |
|
| 611 |
$projects = $searchModel->getProjects($projectsToGet, $locale); |
|
| 612 |
$keydResults = array(); |
|
| 613 |
$keydProjects = array(); |
|
| 614 |
foreach ($results as $result) |
|
| 615 |
$keydResults[$result->id] = $result; |
|
| 616 |
foreach ($projects as $project) |
|
| 617 |
$keydProjects[$project->id] = $project; |
|
| 618 |
|
|
| 619 |
foreach ($claimedPublications as $claimedPublication){
|
|
| 620 |
|
|
| 621 |
/* if ($claimedPublication -> publication == null || $claimedPublication -> publication -> id == null){
|
|
| 622 |
//print_r($claimedPublication -> publication -> concepts); |
|
| 623 |
$claimedPublication -> publication = isset($keydResults[$claimedPublication -> publicationId])?$keydResults[$claimedPublication -> publicationId]:null; |
|
| 624 |
} |
|
| 625 |
*/ |
|
| 626 |
$claimedPublication->targetConceptId=null; |
|
| 627 |
if ($claimedPublication -> publication != null && isset($claimedPublication -> publication -> concepts )){
|
|
| 628 |
$claimedConcepts = array(); |
|
| 629 |
foreach ($claimedPublication -> publication -> concepts as $concept){
|
|
| 630 |
$concept = $this->getConcept($concept); |
|
| 631 |
$claimedConcept = new stdClass(); |
|
| 632 |
$claimedConcept->id = $concept->id; |
|
| 633 |
$claimedConcept->title = $concept->path; |
|
| 634 |
$claimedConcept->date = $claimedPublication->date; |
|
| 635 |
$claimedConcepts[] = $claimedConcept; |
|
| 636 |
$claimedPublication->title=$concept->path; |
|
| 637 |
$claimedPublication->targetConceptId= $concept->id; |
|
| 638 |
} |
|
| 639 |
$claimedPublication -> concepts= $claimedConcepts; |
|
| 640 |
} |
|
| 641 |
if ($claimedPublication -> targetPublicationId !== null){
|
|
| 642 |
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetPublicationId ])?$keydResults[$claimedPublication -> targetPublicationId ]->title:null; |
|
| 643 |
if ($claimedPublication->title == null){
|
|
| 644 |
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null; |
|
| 645 |
} |
|
| 646 |
} |
|
| 647 |
if ($claimedPublication -> targetDatasetId !== null){
|
|
| 648 |
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetDatasetId ])?$keydResults[$claimedPublication -> targetDatasetId ]->title:null; |
|
| 649 |
if ($claimedPublication->title == null){
|
|
| 650 |
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null; |
|
| 651 |
} |
|
| 652 |
} |
|
| 653 |
if ($claimedPublication -> projectId !== null){
|
|
| 654 |
$claimedPublication->title = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->title:null; |
|
| 655 |
$claimedPublication->acronym = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->acronym:null; |
|
| 656 |
|
|
| 657 |
} |
|
| 658 |
if ($claimedPublication -> publication == null || $claimedPublication -> publication -> id == null){
|
|
| 659 |
//print_r($claimedPublication -> publication -> concepts); |
|
| 660 |
$claimedPublication -> publication = isset($keydResults[$claimedPublication -> publicationId])?$keydResults[$claimedPublication -> publicationId]:null; |
|
| 661 |
} |
|
| 662 |
} |
|
| 663 |
JLog :: add('Retrieved ' . count($claimedPublications) . ' claimed publications in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
| 664 |
return $claimedPublications; |
|
| 665 |
} catch (Exception $e) {
|
|
| 666 |
JLog :: add('Error retrieving claimed publications (user: ' . $user -> username . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 667 |
return NULL; |
|
| 668 |
} |
|
| 669 |
} |
|
| 670 |
// Search for a publication DOI. |
|
| 671 |
// $doi the publication DOI to search for |
|
| 672 |
// return a result (object) containing publications and total |
|
| 673 |
private function _searchDOI($doi, $page, $size) {
|
|
| 674 |
try {
|
|
| 675 |
$result = new JObject(); |
|
| 676 |
$result -> publications = array(); |
|
| 677 |
$result -> totalPublications = 0; |
|
| 678 |
$result -> totalDatasets = 0; |
|
| 679 |
$dois = explode(" ", preg_replace('/\s+/', ' ',$doi));
|
|
| 680 |
$unique_dois =array_slice( array_unique($dois),0,10); |
|
| 681 |
$pattern1 ='#\b(10[.][0-9]{4,}(?:[.][0-9]+)*/(?:(?!["&\'<>])\S)+)\b#';
|
|
| 682 |
$pattern2 ='#\b(10[.][0-9]{4,}(?:[.][0-9]+)*/(?:(?!["&\'<>])[[:graph:]])+)\b#';
|
|
| 683 |
if (preg_match($pattern1,$unique_dois[0])||preg_match($pattern2,$unique_dois[0])){
|
|
| 684 |
if(count($dois)>10){
|
|
| 685 |
$result = new JObject(); |
|
| 686 |
$result->publications = array(); |
|
| 687 |
$result->totalPublications = '-'; |
|
| 688 |
$result->totalDatasets = 0; |
|
| 689 |
$result->maxDoisExceeded = true; |
|
| 690 |
return $result; |
|
| 691 |
} |
|
| 692 |
JLog :: add('It;s a DOI!!!!!!!!! '.$dois[0] , JLog :: INFO, self :: LOG);
|
|
| 693 |
JLog :: add('Searching for DOIs ' , JLog :: INFO, self :: LOG);
|
|
| 694 |
foreach($unique_dois as $doi_){
|
|
| 695 |
JLog :: add('DOI::: '.$doi_ , JLog :: INFO, self :: LOG);
|
|
| 696 |
$publication = $this->_searchSingleDOI($doi_); |
|
| 697 |
if ($publication != null) {
|
|
| 698 |
$result->publications[] = $publication; |
|
| 699 |
} |
|
| 700 |
} |
|
| 701 |
}else{
|
|
| 702 |
JLog :: add('It;s NOOOOT a DOI!!!!!!!!! '.$dois[0] , JLog :: INFO, self :: LOG);
|
|
| 703 |
} |
|
| 704 |
|
|
| 705 |
$result -> totalPublications = count( $result -> publications); |
|
| 706 |
if($result -> totalPublications ===0){
|
|
| 707 |
//.'&rows='.$size.'&offset='.$page |
|
| 708 |
$request = "http://api.crossref.org/works?query=" . urlencode( trim($doi))."&rows=".$size."&offset=".($page-1)*$size; |
|
| 709 |
JLog :: add('Requesting ' . $request, JLog :: INFO, self :: LOG);
|
|
| 710 |
$time = microtime(TRUE); |
|
| 711 |
$response = $this -> http -> get($request); |
|
| 712 |
JLog :: add('Received response in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
| 713 |
if ($response == NULL) |
|
| 714 |
throw new Exception('no HTTP response');
|
|
| 715 |
if ($response -> code != self :: HTTP_OK) |
|
| 716 |
throw new Exception('HTTP response code ' . $response -> code);
|
|
| 717 |
$res = array(); |
|
| 718 |
$res = json_decode(str_replace("-", "_", $response -> body));
|
|
| 719 |
if(isset($res -> status)&&$res -> status === "ok" && isset($res -> message)){
|
|
| 720 |
foreach($res ->message -> items as $item){
|
|
| 721 |
$publication = $this -> _parseJsonDOI($item); |
|
| 722 |
if($publication!=null){
|
|
| 723 |
$result -> publications[] = $publication; |
|
| 724 |
} |
|
| 725 |
} |
|
| 726 |
$result -> totalPublications = $res -> message ->total_results; |
|
| 727 |
/*if(isset($size)&&isset($page)){
|
|
| 728 |
$result -> publications = array_slice($result -> publications, ($page - 1) * $size, $size); |
|
| 729 |
}*/ |
|
| 730 |
} |
|
| 731 |
} |
|
| 732 |
return $result; |
|
| 733 |
} catch (Exception $e) {
|
|
| 734 |
JLog :: add('Error performing DOI search (doi: ' . $doi . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 735 |
$result = new JObject(); |
|
| 736 |
$result -> publications = array(); |
|
| 737 |
$result -> totalPublications = 0; |
|
| 738 |
$result -> totalDatasets = 0; |
|
| 739 |
JLog :: add('error parsing DOI record', JLog :: INFO, self :: LOG);
|
|
| 740 |
return $result; |
|
| 741 |
} |
|
| 742 |
} |
|
| 743 |
public function searchSingleDOI($doi) {
|
|
| 744 |
if ($this -> cache -> getCaching()) {
|
|
| 745 |
$cacheId = self :: SEARCH_DOI_CACHE_ID . '.' . $doi; |
|
| 746 |
$results = $this -> cache -> get($cacheId, self :: CACHE_GROUP); |
|
| 747 |
if ($results === FALSE) {
|
|
| 748 |
$results = $this -> _searchSingleDOI($doi); |
|
| 749 |
if ($results !== NULL) |
|
| 750 |
$this -> cache -> store($results, $cacheId, self :: CACHE_GROUP); |
|
| 751 |
} |
|
| 752 |
} else |
|
| 753 |
$results = $this -> _searchSingleDOI($doi); |
|
| 754 |
return $results; |
|
| 755 |
} |
|
| 756 |
private function _searchSingleDOI($doi) {
|
|
| 757 |
try {
|
|
| 758 |
$request = self :: CROSSREF_API_DOI . urlencode( trim($doi)); |
|
| 759 |
JLog :: add('Requesting ' . $request, JLog :: INFO, self :: LOG);
|
|
| 760 |
$time = microtime(TRUE); |
|
| 761 |
$response = $this -> http -> get($request); |
|
| 762 |
JLog :: add('Received response in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
| 763 |
if ($response == NULL) |
|
| 764 |
throw new Exception('no HTTP response');
|
|
| 765 |
if ($response -> code != self :: HTTP_OK) |
|
| 766 |
throw new Exception('HTTP response code ' . $response -> code);
|
|
| 767 |
$res = array(); |
|
| 768 |
$res = json_decode(str_replace("-", "_", $response -> body));
|
|
| 769 |
if(isset($res -> status) && $res -> status === "ok" && isset($res -> message)){
|
|
| 770 |
$publication = $this -> _parseJsonDOI($res -> message); |
|
| 771 |
return $publication; |
|
| 772 |
} |
|
| 773 |
|
|
| 774 |
} catch (Exception $e) {
|
|
| 775 |
JLog :: add('Error performing DOI search (doi: ' . $doi . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
| 776 |
$result = new JObject(); |
|
| 777 |
$result -> publications = array(); |
|
| 778 |
$result -> totalPublications = 0; |
|
| 779 |
$result -> totalDatasets = 0; |
|
| 780 |
JLog :: add('error parsing DOI record', JLog :: INFO, self :: LOG);
|
|
| 781 |
return null; |
|
| 782 |
} |
|
| 783 |
} |
|
| 784 |
private function _parseJsonDOI($message) {
|
|
| 785 |
$publication = new JObject(); |
|
| 786 |
$publication -> id = isset($message -> DOI)?$message -> DOI:NULL; |
|
| 787 |
$publication -> source = self :: DOI; |
|
| 788 |
$publication -> url = isset($message -> URL)?$message -> URL:NULL; |
|
| 789 |
$publication -> accessMode = NULL; |
|
| 790 |
$publication -> datasources = array(); |
|
| 791 |
$publication -> title = (isset($message -> title) && isset($message -> title[0]))?$message -> title[0]:NULL; |
|
| 792 |
$publication -> authors = array(); |
|
| 793 |
if(isset($message -> author)){
|
|
| 794 |
foreach ($message -> author as $author_item) {
|
|
| 795 |
$author = new JObject(); |
|
| 796 |
$author -> id = NULL; |
|
| 797 |
$author -> lastName = isset($author_item-> family) ? trim($author_item -> family):NULL; |
|
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