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package eu.dnetlib.functionality.modular.ui.workflows.controllers;
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import java.awt.image.BufferedImage;
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import java.io.IOException;
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import java.io.OutputStream;
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import java.io.StringReader;
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import java.io.StringWriter;
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import java.util.Collection;
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import java.util.Collections;
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import java.util.Iterator;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import javax.annotation.Resource;
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import javax.imageio.ImageIO;
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import javax.servlet.http.HttpServletResponse;
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import org.apache.commons.lang.math.NumberUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.dom4j.Document;
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import org.dom4j.DocumentException;
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import org.dom4j.Node;
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import org.dom4j.io.SAXReader;
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import org.joda.time.DateTime;
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import org.joda.time.format.DateTimeFormat;
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import org.joda.time.format.DateTimeFormatter;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.stereotype.Controller;
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import org.springframework.web.bind.annotation.RequestMapping;
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import org.springframework.web.bind.annotation.RequestParam;
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import org.springframework.web.bind.annotation.ResponseBody;
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import com.google.common.base.Function;
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import com.google.common.collect.Iterators;
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import com.google.common.collect.Lists;
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import com.google.common.collect.Maps;
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import com.google.gson.Gson;
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import com.google.gson.reflect.TypeToken;
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import eu.dnetlib.common.logging.DnetLogger;
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import eu.dnetlib.common.logging.LogMessage;
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import eu.dnetlib.enabling.datastructures.MetaWorkflow;
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import eu.dnetlib.enabling.datastructures.Workflow;
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import eu.dnetlib.enabling.datastructures.WorkflowInstance;
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import eu.dnetlib.enabling.datastructures.WorkflowInstance.StartMode;
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import eu.dnetlib.enabling.is.client.InformationServiceClient;
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import eu.dnetlib.functionality.modular.ui.AbstractAjaxController;
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import eu.dnetlib.functionality.modular.ui.workflows.objects.NodeInfo;
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import eu.dnetlib.functionality.modular.ui.workflows.sarasvati.viewer.ProcessGraphGenerator;
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import eu.dnetlib.miscutils.DateUtils;
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import eu.dnetlib.msro.dispatcher.ProcessInfo;
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import eu.dnetlib.msro.dispatcher.WorkflowDispatcher;
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import eu.dnetlib.msro.dispatcher.WorkflowRegistry;
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import eu.dnetlib.msro.worker.WorkflowConstants;
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import eu.dnetlib.rmi.objects.is.BlackboardActionStatus;
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import eu.dnetlib.rmi.objects.is.DnetDataStructure;
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import eu.dnetlib.rmi.soap.exceptions.InformationServiceException;
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/**
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* Web controller for the UI
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*
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* @author Michele Artini
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*/
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@Controller
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public class WorkflowsController extends AbstractAjaxController {
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private final class JournalEntryFunction implements Function<Map<String, String>, ProcessInfo> {
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@Override
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public ProcessInfo apply(final Map<String, String> input) {
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final String name = input.get(WorkflowConstants.SYSTEM_WF_PROFILE_NAME);
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String repo = "";
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if (input.containsKey(WorkflowConstants.DATAPROVIDER_NAME)) {
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repo += input.get(WorkflowConstants.DATAPROVIDER_NAME);
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}
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final String procId = input.get(WorkflowConstants.SYSTEM_WF_PROCESS_ID);
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final String metaWfId = input.get(WorkflowConstants.SYSTEM_METAWF_ID);
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final String family = input.get(WorkflowConstants.SYSTEM_WF_PROFILE_FAMILY);
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final long date = NumberUtils.toLong(input.get(LogMessage.LOG_DATE_FIELD), 0);
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final BlackboardActionStatus status = Boolean.valueOf(input.get(WorkflowConstants.SYSTEM_COMPLETED_SUCCESSFULLY)) ? BlackboardActionStatus.DONE
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: BlackboardActionStatus.FAILED;
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final ProcessInfo info = new ProcessInfo(metaWfId, name, repo, family, procId);
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info.setLastActivityDate(date);
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info.setStatus(status);
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return info;
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}
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}
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@Autowired
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private WorkflowDispatcher dispatcher;
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@Autowired
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private WorkflowRegistry wfRegistry;
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@Autowired
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private InformationServiceClient isClient;
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@Resource
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private ProcessGraphGenerator processGraphGenerator;
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@Resource(name = "msroWorkflowLogger")
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private DnetLogger dnetLogger;
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private static final Log log = LogFactory.getLog(WorkflowsController.class);
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@RequestMapping("/ui/list_metaworkflows.json")
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public @ResponseBody
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List<MetaWorkflow> listMetaWorflowsForSection(@RequestParam(value = "section", required = false) final String sectionName,
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@RequestParam(value = "dsId", required = false) final String dsId) {
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if (sectionName != null || dsId != null) {
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final StringWriter sql = new StringWriter();
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sql.append("SELECT ds.content ");
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sql.append("FROM datastructures ds ");
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sql.append("LEFT OUTER JOIN resource_properties p ON (ds.id = p.resource) ");
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sql.append("WHERE ds.type = 'MetaWorkflow' ");
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sql.append("AND ");
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sql.append(sectionName != null ? "p.name='section' AND p.value='" + sectionName + "'" : "p.name='datasource' AND p.value='" + dsId + "'");
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try {
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return isClient.searchResourceByQuery(sql.toString(), MetaWorkflow.class);
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} catch (InformationServiceException e) {
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log.error("Error obtaining MetaWorkflows, using query: " + sql, e);
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}
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}
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return Lists.newArrayList();
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}
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@RequestMapping("/ui/wf_metaworkflow.json")
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public @ResponseBody
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MetaWorkflow getMetaWorkflow(@RequestParam(value = "id", required = true) final String id) throws Exception {
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return isClient.getResourceByCode(id, MetaWorkflow.class);
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}
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@RequestMapping("/ui/workflow.img")
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public void getWorkflowImage(final HttpServletResponse response, @RequestParam(value = "code", required = true) final String code) throws Exception {
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final DnetDataStructure ds = isClient.getDatastructureByCode(code, Workflow.class);
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final BufferedImage image = processGraphGenerator.getWfDescImage(code, ds.getName(), ds.getContent());
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sendImage(response, image);
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}
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@RequestMapping("/ui/workflow.map")
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public @ResponseBody
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String getWorkflowImageMap(@RequestParam(value = "code", required = true) final String code) throws Exception {
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final DnetDataStructure ds = isClient.getDatastructureByCode(code, Workflow.class);
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return processGraphGenerator.getWfDescImageMap(code, ds.getName(), ds.getContent());
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}
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private void sendImage(final HttpServletResponse response, final BufferedImage image) throws IOException {
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response.setContentType("image/png");
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OutputStream out = response.getOutputStream();
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ImageIO.write(image, "png", out);
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out.flush();
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out.close();
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}
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@RequestMapping("/ui/wf.start")
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public @ResponseBody
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String startWorkflow(@RequestParam(value = "metaWf", required = true) final String metaWfId,
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@RequestParam(value = "wf", required = true) final String wfName) throws Exception {
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return dispatcher.dispatchWorkFlow(metaWfId, wfName);
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}
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@RequestMapping("/ui/metawf.start")
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public @ResponseBody
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String startMetaWorkflow(@RequestParam(value = "metaWf", required = true) final String metaWfId) throws Exception {
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return dispatcher.dispatchMetaWorkFlow(metaWfId);
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}
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@RequestMapping("/ui/wf_workflow_node.json")
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public @ResponseBody
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NodeInfo workflowNode_info(@RequestParam(value = "wf", required = true) final String wfCode,
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@RequestParam(value = "node", required = true) final String nodeName) throws InformationServiceException, DocumentException {
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final String xml = isClient.getXmlResourceByCode(wfCode, Workflow.class);
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final Document doc = new SAXReader().read(new StringReader(xml));
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final Node n = doc.selectSingleNode("//NODE[@name='" + nodeName + "']");
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final String name = nodeName;
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final String description = n.valueOf("./DESCRIPTION");
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final boolean start = "true".equalsIgnoreCase(n.valueOf("@isStart"));
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final boolean join = "true".equalsIgnoreCase(n.valueOf("@isJoin"));
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final Map<String, String> params = Maps.newHashMap();
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for (Object o : n.selectNodes("./PARAMETER/PARAM")) {
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final Node p = (Node) o;
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params.put(p.valueOf("@name"), p.getText());
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}
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return new NodeInfo(name, description, start, join, params);
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}
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@RequestMapping("/ui/wf_metaworkflow.edit")
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public @ResponseBody
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boolean editMetaWd(@RequestParam(value = "json", required = true) final String json) throws Exception {
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final MetaWorkflow metaWf = new Gson().fromJson(json, MetaWorkflow.class);
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log.info("Updating metaWorkflow " + metaWf.getName());
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isClient.updateResource(metaWf);
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return true;
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}
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@RequestMapping("/ui/clone_metaworkflow.do")
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public @ResponseBody
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String cloneMetaWf(@RequestParam(value = "code", required = true) final String code,
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@RequestParam(value = "name", required = true) final String newName) throws Exception {
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if (newName.trim().length() > 0) {
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final String newCode = "metawf-" + UUID.randomUUID();
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final MetaWorkflow metaWf = isClient.getResourceByCode(code, MetaWorkflow.class);
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metaWf.setCode(newCode);
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metaWf.setName(newName);
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isClient.registerResource(metaWf);
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return newCode;
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} else {
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throw new IllegalArgumentException("Name is empty");
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}
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}
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/*
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* @RequestMapping("/ui/wf_proc_node.json") public @ResponseBody NodeTokenInfo getProcessWorkflowNode(@RequestParam(value = "id",
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* required = true) final String pid,
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*
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* @RequestParam(value = "node", required = true) final long nid) throws Exception {
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*
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* final NodeToken token = findNodeToken(pid, nid);
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*
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* final NodeTokenInfo info = token == null ? new NodeTokenInfo(findNodeName(pid, nid)) : new NodeTokenInfo(token);
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*
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* return info; }
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*/
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/*
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* private NodeToken findNodeToken(final String pid, final long nid) { final GraphProcess process =
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* graphProcessRegistry.findProcess(pid); if (process != null) { for (NodeToken token : process.getNodeTokens()) { if
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* (token.getNode().getId() == nid) { return token; } } } return null; }
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*
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* private String findNodeName(final String pid, final long nid) { final GraphProcess process = graphProcessRegistry.findProcess(pid);
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* if (process != null) { for (Node node : process.getGraph().getNodes()) { if (node.getId() == nid) { return node.getName(); } } }
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* return "-"; }
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*/
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@RequestMapping("/ui/wf_proc.img")
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public void showProcessWorkflow(final HttpServletResponse response, @RequestParam(value = "id", required = true) final String id) throws Exception {
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BufferedImage image = processGraphGenerator.getProcessImage(id);
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sendImage(response, image);
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}
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@RequestMapping("/ui/wf_proc.kill")
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public @ResponseBody
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boolean killProcessWorkflow(@RequestParam(value = "id", required = true) final String id) throws Exception {
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/*
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* GraphProcess proc = graphProcessRegistry.findProcess(id); proc.setState(ProcessState.Canceled); return true;
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*/
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// TODO
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return false;
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}
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@RequestMapping("/ui/wf_journal.range")
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public @ResponseBody
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Collection<ProcessInfo> rangeWfJournal(@RequestParam(value = "start", required = true) final String start,
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@RequestParam(value = "end", required = true) final String end) throws Exception {
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final Map<String, ProcessInfo> res = Maps.newHashMap();
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final DateTimeFormatter formatter = DateTimeFormat.forPattern("yyyy-MM-dd");
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final DateTime startDate = formatter.parseDateTime(start);
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final DateTime endDate = formatter.parseDateTime(end).plusHours(23).plusMinutes(59).plusSeconds(59);
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final Iterator<ProcessInfo> iter = Iterators.transform(dnetLogger.range(startDate.toDate(), endDate.toDate()), new JournalEntryFunction());
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while (iter.hasNext()) {
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ProcessInfo e = iter.next();
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res.put(e.getProcId(), e);
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}
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long now = DateUtils.now();
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if (startDate.isBefore(now) && endDate.isAfter(now)) {
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for (String pid : wfRegistry.listProcIds()) {
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res.put(pid, wfRegistry.findProcess(pid));
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}
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}
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return res.values();
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}
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@RequestMapping("/ui/wf_journal.find")
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public @ResponseBody
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Collection<ProcessInfo> findWfJournal(@RequestParam(value = "wfs", required = true) final String wfs) {
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final Map<String, ProcessInfo> res = Maps.newHashMap();
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final Set<String> wfFilter = new Gson().fromJson(wfs, new TypeToken<Set<String>>() {}.getType());
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for (String wfId : wfFilter) {
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final Iterator<ProcessInfo> iter = Iterators.transform(dnetLogger.find(WorkflowConstants.SYSTEM_METAWF_ID, wfId),
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new JournalEntryFunction());
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while (iter.hasNext()) {
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ProcessInfo e = iter.next();
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res.put(e.getProcId(), e);
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}
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}
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for (String pid : wfRegistry.listProcIds()) {
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final ProcessInfo proc = wfRegistry.findProcess(pid);
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if (wfFilter.contains(proc.getMetaWfId())) {
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res.put(pid, proc);
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}
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}
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return res.values();
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}
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@RequestMapping("/ui/wf_journal_byFamily.find")
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public @ResponseBody
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Collection<ProcessInfo> findWfJournalByFamily(@RequestParam(value = "family", required = true) final String family) throws IOException {
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final Iterator<ProcessInfo> iter = Iterators.transform(dnetLogger.find(WorkflowConstants.SYSTEM_WF_PROFILE_FAMILY, family),
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new JournalEntryFunction());
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return Lists.newArrayList(iter);
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}
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@RequestMapping("/ui/wf_journal.get")
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public @ResponseBody
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Map<String, Object> getWfJournalLog(@RequestParam(value = "id", required = true) final String id) throws Exception {
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final Map<String, Object> res = Maps.newHashMap();
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final Map<String, String> logs = dnetLogger.findOne("system:processId", id);
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if (logs != null && !logs.isEmpty()) {
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final List<String> keys = Lists.newArrayList(logs.keySet());
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Collections.sort(keys);
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final List<Map<String, String>> journalEntry = Lists.newArrayList();
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for (String k : keys) {
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final Map<String, String> m = Maps.newHashMap();
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m.put("name", k);
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m.put("value", logs.get(k));
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journalEntry.add(m);
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}
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res.put("journal", journalEntry);
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}
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final ProcessInfo process = wfRegistry.findProcess(id);
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if (process != null) {
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/*
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* final String mapContent = process.getState() == ProcessState.Created ? "" : processGraphGenerator.getProcessImageMap(id);
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*
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* String status = ""; if (!process.isComplete()) { status = process.getState().toString().toUpperCase(); } else if
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* ("true".equals(process.getEnv().getAttribute(WorkflowConstants.SYSTEM_COMPLETED_SUCCESSFULLY))) { status = "SUCCESS"; } else
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* { status = "FAILURE"; }
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*
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* final String img = process.getState() == ProcessState.Created ? "../resources/img/notStarted.gif" : "wf_proc.img?id=" + id +
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* "&t=" + DateUtils.now();
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*
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* final String name = process.getGraph().getName();
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*
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* final long startDate = NumberUtils.toLong(process.getEnv().getAttribute(WorkflowConstants.SYSTEM_START_DATE), 0); final long
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* endDate = NumberUtils.toLong(process.getEnv().getAttribute(WorkflowConstants.SYSTEM_END_DATE), 0);
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*
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* final AtomicWorkflowDescriptor wf = new AtomicWorkflowDescriptor(id, name, status, mapContent, img, true, "auto", "RUNNING",
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* startDate, endDate);
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*
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* res.put("graph", wf);
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*/
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// TODO
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}
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return res;
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}
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@RequestMapping("/ui/wf_atomic_workflow.enable")
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public @ResponseBody
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String enableAtomicWf(@RequestParam(value = "metaWf", required = true) final String metaWfId,
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@RequestParam(value = "wf", required = true) final String wfName,
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@RequestParam(value = "start", required = true) final String value) throws Exception {
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final MetaWorkflow metaWf = isClient.getResourceByCode(metaWfId, MetaWorkflow.class);
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final WorkflowInstance wfi = metaWf.findWorkflowInstanceByName(wfName);
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if (wfi != null) {
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wfi.setStartMode(StartMode.valueOf(value.toUpperCase()));
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383
|
isClient.updateResource(metaWf);
|
384
|
}
|
385
|
|
386
|
return value;
|
387
|
}
|
388
|
/*
|
389
|
* @RequestMapping("/ui/workflow_user_params.json") public @ResponseBody List<NodeWithUserParams>
|
390
|
* listWorkflowUserParams(@RequestParam(value = "wf", required = true) final String wfId) throws Exception { return
|
391
|
* isLookupClient.listWorkflowUserParams(wfId); }
|
392
|
*
|
393
|
* @RequestMapping(value = "/ui/save_user_params.do") public @ResponseBody boolean saveWorkflowUserParams(@RequestParam(value = "wf",
|
394
|
* required = true) final String wfId,
|
395
|
*
|
396
|
* @RequestParam(value = "params", required = true) final String jsonParams) throws Exception {
|
397
|
*
|
398
|
* final String xml = isLookupClient.getProfile(wfId);
|
399
|
*
|
400
|
* final List<NodeWithUserParams> params = new Gson().fromJson(jsonParams, new TypeToken<List<NodeWithUserParams>>() {}.getType());
|
401
|
*
|
402
|
* boolean res = isRegistryClient.updateSarasvatiWorkflow(wfId, xml, params);
|
403
|
*
|
404
|
* for (String metaWfId : isLookupClient.listMetaWorflowsForWfId(wfId)) { if (isLookupClient.isExecutable(metaWfId)) {
|
405
|
* isRegistryClient.updateMetaWorkflowStatus(metaWfId, WorkflowStatus.EXECUTABLE); } else {
|
406
|
* isRegistryClient.updateMetaWorkflowStatus(metaWfId, WorkflowStatus.WAIT_USER_SETTINGS); } }
|
407
|
*
|
408
|
* return res; }
|
409
|
*/
|
410
|
}
|