D-Net

#1339 fixing input_dedup_map in pmc citation ingestion when match_content_with_metadata=false. Should not be set dynamically but statically, it will be enabled only when metadata_import is enabled

#1339 replacing active_existence_filter flag with match_content_with_metadata and changing identifiers matching logic: when flag is disabled neither contents identifiers will be filtered nor deduplicated against metadata identifiers. Up unit now, when active_existence_filter flag was disabled contents were deduplicated which is not desired when running IIS in standalone mode on contents having their representatives in HBase

#1329 enabling pmc ingestion when active_metadataextraction_export flag is enabled

introducing missing pdb reference extraction missing parameters

bugfix: renaming obsolete decision-export to decision-export-to-hbase

#1308 reverting uri:oozie:distcp-action:0.2 change: version is not properly recognized by oozie 3.3.2-cdh4.3.1

#1260 enabling document to protein databank reference extraction in primary workflow, supporting 3 new parameters: active_referenceextraction_pdb, export_action_set_id_document_pdb, export_referenceextraction_pdb_url_root

#1315 providing missing confidenceLevel

#1315 providing missing confidenceLevel

#1315 updating expected jsons in integration test after DocumentToConceptIds schema refactoring