D-Net

merging trunk changes with IIS-CDH-5.3.0 branch

#1498 introducing major citations related refactoring including new generic direct citation matching moved to processing phase, introduced position field in all citations schemas and updated collapser taking position into account when merging citations details coming from 3 variuos sources: fuzzy citationmatching, direct citationmatching, references metadata

#1395 WorkflowRuntimeParameters static fields cleanup, moving parameters to dedicated modules to prevent excessing icm-iis-common module modifications

#1209 introducing support for trust level thresholds provided as IIS input parameter

merging trunk changes with IIS-CDH-5.3.0 branch

#1212 updating taxomonies database, introducing acm taxonomy classification, introducing acm classes support in exporter module, updating integration tests

#1329 adding affiliations field in ExtractedDocumentMetadata PMC schema. Metadata extraction code refactoring by extracting code responsible for building Affiliation avro records to AffiliationBuilder class and sharing it with pmc ingestion. Implementing affiliations ingestion functionality in PmcXmlHandler covered with unit tests. Adding affiliations field support in ingest pmc metadata transformer.

fixing module and parent version to 1.0.1-CDH-5.3.0-SNAPSHOT

merging trunk changes with IIS-CDH-5.3.0 branch

#1257 dropping schema generation related hacks in all map-reduce modules, switching to literal schema parameters