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<?xml version="1.0" encoding="UTF-8"?>
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<RESOURCE_PROFILE>
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<HEADER>
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<RESOURCE_IDENTIFIER value="251db67f-24ac-4d1d-9e7b-d38fe8898234_V29ya2Zsb3dEU1Jlc291cmNlcy9Xb3JrZmxvd0RTUmVzb3VyY2VUeXBl"/>
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<RESOURCE_TYPE value="WorkflowDSResourceType"/>
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<RESOURCE_KIND value="WorkflowDSResources"/>
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<RESOURCE_URI value=""/>
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<DATE_OF_CREATION value="2006-05-04T18:13:51.0Z"/>
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</HEADER>
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<BODY>
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<WORKFLOW_NAME>Offline Deduplication v2</WORKFLOW_NAME>
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<WORKFLOW_TYPE>Deduplication</WORKFLOW_TYPE>
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<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
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<CONFIGURATION start="manual">
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<NODE name="fetchRelClasses" type="FetchRelClasses" isStart="true">
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<DESCRIPTION />
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<PARAMETERS>
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<PARAM name="relClassesProperty" type="string" managedBy="system" required="true">dnet.openaire.model.relclasses.xquery</PARAM>
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<PARAM name="relClassesName" type="string" managedBy="system" required="true">relClasses</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="checkConf" />
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</ARCS>
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</NODE>
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<NODE name="setDedupConfigs" type="SetDedupConfiguration" isStart="true">
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<DESCRIPTION>Set Dedup conf</DESCRIPTION>
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<PARAMETERS>
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<PARAM function="obtainValues('dedupOrchestrations', {})" required="true" type="string" name="dedupConfigSequence" managedBy="user"></PARAM>
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="checkConf" />
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</ARCS>
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</NODE>
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<NODE name="hadoopConfig" type="SetClusterAndTable" isStart="true">
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<DESCRIPTION>Set table name</DESCRIPTION>
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<PARAMETERS>
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<PARAM required="true" type="string" name="cluster" managedBy="system">DM</PARAM>
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<PARAM required="true" type="string" name="tableParam" managedBy="system">tableName</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="checkConf" />
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</ARCS>
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</NODE>
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<NODE name="setWorkingPath" type="SetEnvParameter" isStart="true">
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<DESCRIPTION>Set the working dir on HDFS for the MinDist Algo</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">workDir</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/dedup/mindist</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="checkConf"/>
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</ARCS>
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</NODE>
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<NODE name="checkConf" type="DedupCheckConfiguration" isJoin="true">
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<DESCRIPTION/>
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<PARAMETERS>
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="resetPath" />
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</ARCS>
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</NODE>
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<NODE name="resetPath" type="CreateHdfsDirJob">
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<DESCRIPTION>input files cleanup</DESCRIPTION>
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<PARAMETERS>
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<PARAM required="true" type="boolean" name="force" managedBy="system">true</PARAM>
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<PARAM required="true" type="string" name="envParams" managedBy="system">
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{
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'path' : 'workDir',
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'cluster' : 'cluster'
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}
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</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="deduplicateScan"/>
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</ARCS>
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</NODE>
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<NODE name="deduplicateScan" type="DuplicateScanJob">
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<DESCRIPTION>Dup Scan</DESCRIPTION>
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<PARAMETERS>
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<PARAM required="true" type="string" name="hadoopJob" managedBy="system">dedupCandidateScanJob</PARAM>
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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<PARAM required="true" type="string" name="envParams" managedBy="system">
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{
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'entityTypeId' : 'entityTypeId',
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'entityType' : 'entityType',
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'cluster' : 'cluster',
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'hbase.mapred.inputtable' : 'tableName',
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'hbase.mapred.outputtable' : 'tableName',
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'hbase.mapreduce.inputtable' : 'tableName',
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'hbase.mapreduce.outputtable' : 'tableName'
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}
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</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="deduplicateScan" />
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<ARC name="done" to="prepareActionSet" />
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<ARC name="done" to="queryUserActions" />
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</ARCS>
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</NODE>
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<NODE name="queryUserActions">
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<DESCRIPTION>query user actions</DESCRIPTION>
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<PARAMETERS/>
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<ARCS>
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<ARC to="querySimilarities"/>
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</ARCS>
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</NODE>
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<NODE name="querySimilarities" type="QueryUserActionDbJob">
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<DESCRIPTION>query similarity</DESCRIPTION>
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<PARAMETERS>
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<PARAM name="dedupConfigSequenceParam" type="string" required="true" managedBy="system">dedup.conf.queue</PARAM>
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<PARAM name="dbProperty" type="string" managedBy="system" required="true">dnet.dedup.db.name</PARAM>
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<PARAM name="sql" type="string" managedBy="system" required="true">/eu/dnetlib/msro/workflows/dedup/querySimilaritiesBySet.sql.st</PARAM>
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<PARAM name="outputEprParam" type="string" managedBy="system" required="true">simEpr</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="buildSimilarityMesh"/>
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</ARCS>
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</NODE>
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<NODE name="buildSimilarityMesh" type="BuildSimilarityMeshJob">
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<DESCRIPTION>build mesh</DESCRIPTION>
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<PARAMETERS>
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<PARAM name="inputEprParam" type="string" managedBy="system" required="true">simEpr</PARAM>
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<PARAM name="outputEprParam" type="string" managedBy="system" required="true">simMeshEpr</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="storeSimilarities"/>
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</ARCS>
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</NODE>
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<NODE name="storeSimilarities" type="StoreHBase">
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<DESCRIPTION>store similarity</DESCRIPTION>
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<PARAMETERS>
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<PARAM name="inputEprParam" type="string" managedBy="system" required="true">simMeshEpr</PARAM>
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<PARAM name="hbaseTableProperty" type="string" managedBy="system" required="true">hbase.mapred.datatable</PARAM>
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<PARAM name="cluster" type="string" managedBy="system" required="true">DM</PARAM>
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<PARAM name="mapping" type="string" managedBy="user" required="true" function="obtainValues('dbmf2hbaseMappings', {})"></PARAM>
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<PARAM name="simulation" type="boolean" managedBy="user" required="false">false</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="queryDissimilarities"/>
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</ARCS>
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</NODE>
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<NODE name="queryDissimilarities" type="QueryUserActionDbJob">
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<DESCRIPTION>query dissimilarity</DESCRIPTION>
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<PARAMETERS>
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<PARAM name="dedupConfigSequenceParam" type="string" required="true" managedBy="system">dedup.conf.queue</PARAM>
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<PARAM name="dbProperty" type="string" managedBy="system" required="true">dnet.dedup.db.name</PARAM>
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<PARAM name="sql" type="string" managedBy="system" required="true">/eu/dnetlib/msro/workflows/dedup/queryDissimilaritiesBySet.sql.st</PARAM>
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<PARAM name="outputEprParam" type="string" managedBy="system" required="true">dissimEpr</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="storeDissimilarities"/>
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</ARCS>
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</NODE>
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<NODE name="storeDissimilarities" type="DeleteFromHBase">
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<DESCRIPTION>store dissimilarity</DESCRIPTION>
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<PARAMETERS>
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<PARAM name="inputEprParam" type="string" managedBy="system" required="true">dissimEpr</PARAM>
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<PARAM name="hbaseTableProperty" type="string" managedBy="system" required="true">hbase.mapred.datatable</PARAM>
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<PARAM name="cluster" type="string" managedBy="system" required="true">DM</PARAM>
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<PARAM name="mapping" type="string" managedBy="user" required="true" function="obtainValues('dbmf2hbaseMappings', {})"></PARAM>
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<PARAM name="simulation" type="boolean" managedBy="user" required="false">false</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="doneUserActions"/>
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</ARCS>
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</NODE>
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<NODE name="doneUserActions" isJoin="true">
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<DESCRIPTION>done user actions</DESCRIPTION>
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<PARAMETERS/>
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<ARCS>
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<ARC to="doneActions"/>
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</ARCS>
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</NODE>
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<NODE name="prepareActionSet" type="PrepareConfiguredActionSet">
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<DESCRIPTION>prepare action sets</DESCRIPTION>
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<PARAMETERS>
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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<PARAM required="true" type="string" name="jobProperty" managedBy="system">rawSetId</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="similarity2actions" />
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</ARCS>
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</NODE>
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<NODE name="similarity2actions" type="DedupSimilarityToActionsJobNode">
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<DESCRIPTION>export the similarity rels as Actions</DESCRIPTION>
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<PARAMETERS>
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<PARAM required="true" type="string" name="hadoopJob" managedBy="system">dedupSimilarity2ActionsJob</PARAM>
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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<PARAM required="true" type="string" name="envParams" managedBy="system">
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{
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'dedup.conf' : 'dedup.conf',
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'entityTypeId' : 'entityTypeId',
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'entityType' : 'entityType',
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'cluster' : 'cluster',
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'rawSetId' : 'rawSetId',
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'hbase.mapred.inputtable' : 'tableName',
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'hbase.mapreduce.inputtable' : 'tableName'
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}
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</PARAM>
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<PARAM required="true" type="string" name="sysParams" managedBy="system">
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{
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'hbase.mapred.outputtable' : 'hbase.actions.table',
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'hbase.mapreduce.outputtable' : 'hbase.actions.table'
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}
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</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="updateActionSets" />
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</ARCS>
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</NODE>
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<NODE name="updateActionSets" type="UpdateActionSets">
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<DESCRIPTION>update action sets</DESCRIPTION>
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<PARAMETERS/>
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<ARCS>
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<ARC to="doneActions" />
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</ARCS>
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</NODE>
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<NODE name="doneActions" isJoin="true">
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<DESCRIPTION>done user actions</DESCRIPTION>
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<PARAMETERS/>
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<ARCS>
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<ARC to="mindist"/>
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</ARCS>
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</NODE>
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249
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<NODE name="mindist" type="MinDistSearchHadoopJob">
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<DESCRIPTION>find the minimum verted in each adjacency lists</DESCRIPTION>
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<PARAMETERS>
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<PARAM required="true" type="boolean" name="debug" managedBy="user">false</PARAM>
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<PARAM required="true" type="boolean" name="outPathParam" managedBy="system">outputPath</PARAM>
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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<PARAM required="true" type="string" name="envParams" managedBy="system">
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{
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'cluster' : 'cluster',
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'entityTypeId' : 'entityTypeId',
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'hbase.mapred.inputtable' : 'tableName',
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261
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'hbase.mapreduce.inputtable' : 'tableName',
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'workDir' : 'workDir'
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}
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</PARAM>
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</PARAMETERS>
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266
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<ARCS>
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<ARC name="depth_n" to="mindist"/>
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268
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<ARC to="components"/>
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</ARCS>
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</NODE>
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271
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<NODE name="components" type="DedupConfigurationAwareJob">
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273
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<DESCRIPTION>joins all the vertex ids to build the connected components in the graph</DESCRIPTION>
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274
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<PARAMETERS>
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275
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<PARAM required="true" type="string" name="hadoopJob" managedBy="system">connectedComponentsJob</PARAM>
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276
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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277
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<PARAM required="true" type="string" name="envParams" managedBy="system">
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278
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{
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279
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'cluster' : 'cluster',
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280
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'entityType' : 'entityType',
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281
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'entityTypeId' : 'entityTypeId',
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282
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'mapred.input.dir' : 'outputPath',
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283
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'hbase.mapred.outputtable' : 'tableName',
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284
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'hbase.mapreduce.outputtable' : 'tableName'
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285
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}
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286
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</PARAM>
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287
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</PARAMETERS>
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288
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<ARCS>
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289
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<ARC to="markDeleted"/>
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290
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</ARCS>
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291
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</NODE>
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292
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293
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<NODE name="markDeleted" type="DedupConfigurationAwareJob">
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294
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<DESCRIPTION>mark duplicates as deleted by inference</DESCRIPTION>
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295
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<PARAMETERS>
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296
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<PARAM required="true" type="string" name="hadoopJob" managedBy="system">dedupMarkDeletedEntityJob</PARAM>
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297
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<PARAM required="true" type="string" name="dedupConfigSequenceParam" managedBy="system">dedup.conf.queue</PARAM>
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298
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<PARAM required="true" type="string" name="envParams" managedBy="system">
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299
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{
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300
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'cluster' : 'cluster',
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301
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'entityType' : 'entityType',
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302
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'entityTypeId' : 'entityTypeId',
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303
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'hbase.mapred.inputtable' : 'tableName',
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304
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'hbase.mapreduce.inputtable' : 'tableName',
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305
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'hbase.mapred.outputtable' : 'tableName',
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306
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'hbase.mapreduce.outputtable' : 'tableName'
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307
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}
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</PARAM>
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309
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</PARAMETERS>
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310
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<ARCS>
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311
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<ARC to="buildRoots"/>
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312
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</ARCS>
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313
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</NODE>
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314
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315
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<NODE name="buildRoots" type="SubmitHadoopJob">
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316
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<DESCRIPTION>redirect rels</DESCRIPTION>
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317
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<PARAMETERS>
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318
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<PARAM required="true" type="string" name="hadoopJob" managedBy="system">dedupBuildRootsJob</PARAM>
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319
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<PARAM required="true" type="string" name="envParams" managedBy="system">
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320
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{
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321
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'dedup.conf' : 'dedup.conf',
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322
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'relClasses' : 'relClasses',
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323
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'entityTypeId' : 'entityTypeId',
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324
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'entityType' : 'entityType',
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325
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'cluster' : 'cluster',
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326
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'hbase.mapred.inputtable' : 'tableName',
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327
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'hbase.mapreduce.inputtable' : 'tableName',
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328
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'hbase.mapred.outputtable' : 'tableName',
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329
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'hbase.mapreduce.outputtable' : 'tableName'
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330
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}
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331
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</PARAM>
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332
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</PARAMETERS>
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333
|
<ARCS>
|
|
334
|
<ARC to="findIndex" />
|
|
335
|
</ARCS>
|
|
336
|
</NODE>
|
|
337
|
|
|
338
|
<NODE name="findIndex" type="FindIndex">
|
|
339
|
<DESCRIPTION />
|
|
340
|
<PARAMETERS>
|
|
341
|
<PARAM name="mdFormat" type="string" managedBy="system" required="true">OPENAIRE</PARAM>
|
|
342
|
<PARAM name="layout" type="string" managedBy="system" required="true">index</PARAM>
|
|
343
|
<PARAM name="interpretation" type="string" managedBy="system" required="true">dedup</PARAM>
|
|
344
|
</PARAMETERS>
|
|
345
|
<ARCS>
|
|
346
|
<ARC name="found" to="prepareIndex" />
|
|
347
|
<ARC name="notFound" to="createIndex" />
|
|
348
|
</ARCS>
|
|
349
|
</NODE>
|
|
350
|
|
|
351
|
<NODE name="createIndex" type="CreateIndex">
|
|
352
|
<DESCRIPTION />
|
|
353
|
<PARAMETERS />
|
|
354
|
<ARCS>
|
|
355
|
<ARC to="prepareIndex" />
|
|
356
|
</ARCS>
|
|
357
|
</NODE>
|
|
358
|
|
|
359
|
<NODE name="prepareIndex" type="PrepareDedupIndexJob">
|
|
360
|
<DESCRIPTION>Prepare indexing</DESCRIPTION>
|
|
361
|
<PARAMETERS>
|
|
362
|
<PARAM name="rottenRecordsPathParam" type="string" required="true" managedBy="system">rottenRecordsPath</PARAM>
|
|
363
|
<PARAM required="true" type="string" name="dedupConfig" managedBy="system">
|
|
364
|
{
|
|
365
|
'dedupConfig' : 'dedup.conf'
|
|
366
|
}
|
|
367
|
</PARAM>
|
|
368
|
</PARAMETERS>
|
|
369
|
<ARCS>
|
|
370
|
<ARC to="cleanupRotten" />
|
|
371
|
</ARCS>
|
|
372
|
</NODE>
|
|
373
|
|
|
374
|
<NODE name="cleanupRotten" type="DeleteHdfsPathJob">
|
|
375
|
<DESCRIPTION>hdfs cleanup (rotten)</DESCRIPTION>
|
|
376
|
<PARAMETERS>
|
|
377
|
<PARAM required="true" type="string" name="cluster" managedBy="system">DM</PARAM>
|
|
378
|
<PARAM required="true" type="string" name="envParams" managedBy="system">
|
|
379
|
{
|
|
380
|
'path' : 'rottenRecordsPath'
|
|
381
|
}
|
|
382
|
</PARAM>
|
|
383
|
</PARAMETERS>
|
|
384
|
<ARCS>
|
|
385
|
<ARC to="updateIndex" />
|
|
386
|
</ARCS>
|
|
387
|
</NODE>
|
|
388
|
|
|
389
|
<NODE name="updateIndex" type="SubmitHadoopJob">
|
|
390
|
<DESCRIPTION>M/O index records</DESCRIPTION>
|
|
391
|
<PARAMETERS>
|
|
392
|
<PARAM required="true" type="string" name="hadoopJob" managedBy="system">dedupIndexFeedJob</PARAM>
|
|
393
|
<PARAM required="true" type="string" name="envParams" managedBy="system">
|
|
394
|
{
|
|
395
|
'mapred.output.dir' : 'rottenRecordsPath',
|
|
396
|
'index.fields' : 'index.fields',
|
|
397
|
'index.solr.url' : 'index.solr.url',
|
|
398
|
'index.solr.collection' : 'index.solr.collection',
|
|
399
|
'index.buffer.flush.threshold' : 'index.buffer.flush.threshold',
|
|
400
|
'index.shutdown.wait.time' : 'index.shutdown.wait.time',
|
|
401
|
'index.solr.sim.mode' : 'index.solr.sim.mode',
|
|
402
|
'index.feed.timestamp' : 'index.feed.timestamp',
|
|
403
|
'entityTypeId' : 'entityTypeId',
|
|
404
|
'entityType' : 'entityType',
|
|
405
|
'actionset' : 'actionset',
|
|
406
|
'cluster' : 'cluster'
|
|
407
|
}
|
|
408
|
</PARAM>
|
|
409
|
<PARAM required="true" type="string" name="sysParams" managedBy="system">
|
|
410
|
{
|
|
411
|
'hbase.mapred.inputtable' : 'hbase.mapred.datatable',
|
|
412
|
'hbase.mapreduce.inputtable' : 'hbase.mapred.datatable'
|
|
413
|
}
|
|
414
|
</PARAM>
|
|
415
|
</PARAMETERS>
|
|
416
|
<ARCS>
|
|
417
|
<ARC to="finalize" />
|
|
418
|
</ARCS>
|
|
419
|
</NODE>
|
|
420
|
|
|
421
|
<NODE name="finalize" type="FinalizeDedupIndexFeeding">
|
|
422
|
<DESCRIPTION>commit changes</DESCRIPTION>
|
|
423
|
<PARAMETERS />
|
|
424
|
<ARCS>
|
|
425
|
<ARC to="updateDs" />
|
|
426
|
</ARCS>
|
|
427
|
</NODE>
|
|
428
|
|
|
429
|
<NODE name="updateDs" type="IndexDsUpdateJob">
|
|
430
|
<DESCRIPTION>update DS</DESCRIPTION>
|
|
431
|
<PARAMETERS />
|
|
432
|
<ARCS>
|
|
433
|
<ARC to="success" />
|
|
434
|
</ARCS>
|
|
435
|
</NODE>
|
|
436
|
|
|
437
|
</CONFIGURATION>
|
|
438
|
<STATUS />
|
|
439
|
</BODY>
|
|
440
|
</RESOURCE_PROFILE>
|