Revision 41141
Added by Eri Katsari over 8 years ago
| modules/dnet-openaire-lodexport-wf/src/main/resources/eu/dnetlib/iis/core/javamapreduce/lodexport/oozie_app/workflow.xml | ||
|---|---|---|
| 1 | 1 |
<workflow-app name="lod_generation" xmlns="uri:oozie:workflow:0.4"> |
| 2 |
<!-- map reduce job that exports hbase data and prepares them for import
|
|
| 3 |
to the lod_generation -->
|
|
| 2 |
<!-- map reduce job that exports hbase data and prepares them for import
|
|
| 3 |
to the lod_generation -->
|
|
| 4 | 4 |
|
| 5 |
<global>
|
|
| 6 |
<job-tracker>${jobTracker}</job-tracker>
|
|
| 7 |
<name-node>${nameNode}</name-node>
|
|
| 8 |
<configuration>
|
|
| 9 |
<property>
|
|
| 10 |
<name>mapred.job.queue.name</name>
|
|
| 11 |
<value>${queueName}</value>
|
|
| 12 |
</property>
|
|
| 13 |
<property>
|
|
| 14 |
<name>oozie.sqoop.log.level</name>
|
|
| 15 |
<value>DEBUG</value>
|
|
| 16 |
</property>
|
|
| 17 |
</configuration>
|
|
| 18 |
</global>
|
|
| 5 |
<global>
|
|
| 6 |
<job-tracker>${jobTracker}</job-tracker>
|
|
| 7 |
<name-node>${nameNode}</name-node>
|
|
| 8 |
<configuration>
|
|
| 9 |
<property>
|
|
| 10 |
<name>mapred.job.queue.name</name>
|
|
| 11 |
<value>${queueName}</value>
|
|
| 12 |
</property>
|
|
| 13 |
<property>
|
|
| 14 |
<name>oozie.sqoop.log.level</name>
|
|
| 15 |
<value>DEBUG</value>
|
|
| 16 |
</property>
|
|
| 17 |
</configuration>
|
|
| 18 |
</global>
|
|
| 19 | 19 |
|
| 20 | 20 |
|
| 21 |
<start to='clearGraph' />
|
|
| 21 |
<start to='clearGraph'/>
|
|
| 22 | 22 |
|
| 23 | 23 |
|
| 24 |
<action name="csv_export">
|
|
| 25 |
<map-reduce>
|
|
| 24 |
<action name="csv_export">
|
|
| 25 |
<map-reduce>
|
|
| 26 | 26 |
|
| 27 |
<prepare>
|
|
| 28 |
<delete path="${nameNode}${lod_output}" />
|
|
| 27 |
<prepare>
|
|
| 28 |
<delete path="${nameNode}${lod_output}"/>
|
|
| 29 | 29 |
|
| 30 |
</prepare>
|
|
| 30 |
</prepare>
|
|
| 31 | 31 |
|
| 32 |
<configuration>
|
|
| 32 |
<configuration>
|
|
| 33 | 33 |
|
| 34 |
<property>
|
|
| 35 |
<name>hbase.mapreduce.scan</name>
|
|
| 36 |
<value>${wf:actionData('get-scanner')['scan']}</value>
|
|
| 37 |
</property>
|
|
| 38 |
<property>
|
|
| 39 |
<name>hbase.rootdir</name>
|
|
| 40 |
<value>$nameNode/hbase</value>
|
|
| 34 |
<property>
|
|
| 35 |
<name>hbase.mapreduce.scan</name>
|
|
| 36 |
<value>${wf:actionData('get-scanner')['scan']}</value>
|
|
| 37 |
</property>
|
|
| 38 |
<property>
|
|
| 39 |
<name>hbase.rootdir</name>
|
|
| 40 |
<value>$nameNode/hbase</value>
|
|
| 41 | 41 |
|
| 42 |
</property>
|
|
| 42 |
</property>
|
|
| 43 | 43 |
|
| 44 |
<property>
|
|
| 45 |
<name>hbase.security.authentication</name>
|
|
| 46 |
<value>simple</value>
|
|
| 47 |
</property>
|
|
| 48 |
<!-- ZOOKEEPER -->
|
|
| 44 |
<property>
|
|
| 45 |
<name>hbase.security.authentication</name>
|
|
| 46 |
<value>simple</value>
|
|
| 47 |
</property>
|
|
| 48 |
<!-- ZOOKEEPER -->
|
|
| 49 | 49 |
|
| 50 |
<property>
|
|
| 51 |
<name>hbase.zookeeper.quorum</name>
|
|
| 52 |
<value>
|
|
| 53 |
namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu
|
|
| 54 |
</value>
|
|
| 55 |
<!-- <value>quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu
|
|
| 56 |
</value> -->
|
|
| 57 |
</property>
|
|
| 58 |
<property>
|
|
| 59 |
<name>zookeeper.znode.rootserver</name>
|
|
| 60 |
<value>root-region-server</value>
|
|
| 50 |
<property>
|
|
| 51 |
<name>hbase.zookeeper.quorum</name>
|
|
| 52 |
<value>
|
|
| 53 |
namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu
|
|
| 54 |
</value>
|
|
| 55 |
<!-- <value>quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu
|
|
| 56 |
</value> -->
|
|
| 57 |
</property>
|
|
| 58 |
<property>
|
|
| 59 |
<name>zookeeper.znode.rootserver</name>
|
|
| 60 |
<value>root-region-server</value>
|
|
| 61 | 61 |
|
| 62 |
</property>
|
|
| 63 |
<property>
|
|
| 64 |
<name>hbase.zookeeper.property.clientPort</name>
|
|
| 65 |
<value>2181</value>
|
|
| 66 |
<!--<value>2182</value> -->
|
|
| 67 |
</property>
|
|
| 62 |
</property>
|
|
| 63 |
<property>
|
|
| 64 |
<name>hbase.zookeeper.property.clientPort</name>
|
|
| 65 |
<value>2181</value>
|
|
| 66 |
<!--<value>2182</value> -->
|
|
| 67 |
</property>
|
|
| 68 | 68 |
|
| 69 | 69 |
|
| 70 |
<!-- MR IO -->
|
|
| 70 |
<!-- MR IO -->
|
|
| 71 | 71 |
|
| 72 |
<property>
|
|
| 73 |
<name>mapreduce.inputformat.class</name>
|
|
| 74 |
<value>org.apache.hadoop.hbase.mapreduce.TableInputFormat</value>
|
|
| 75 |
</property>
|
|
| 72 |
<property>
|
|
| 73 |
<name>mapreduce.inputformat.class</name>
|
|
| 74 |
<value>org.apache.hadoop.hbase.mapreduce.TableInputFormat</value>
|
|
| 75 |
</property>
|
|
| 76 | 76 |
|
| 77 |
<property>
|
|
| 78 |
<name>mapred.mapoutput.key.class</name>
|
|
| 79 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 80 |
</property>
|
|
| 81 |
<property>
|
|
| 82 |
<name>mapred.mapoutput.value.class</name>
|
|
| 83 |
<value>org.apache.hadoop.hbase.io.ImmutableBytesWritable</value>
|
|
| 84 |
</property>
|
|
| 85 |
<property>
|
|
| 86 |
<name>mapred.output.key.class</name>
|
|
| 87 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 88 |
</property>
|
|
| 89 |
<property>
|
|
| 90 |
<name>mapred.output.value.class</name>
|
|
| 91 |
<value>org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat</value>
|
|
| 92 |
</property>
|
|
| 77 |
<property>
|
|
| 78 |
<name>mapred.mapoutput.key.class</name>
|
|
| 79 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 80 |
</property>
|
|
| 81 |
<property>
|
|
| 82 |
<name>mapred.mapoutput.value.class</name>
|
|
| 83 |
<value>org.apache.hadoop.hbase.io.ImmutableBytesWritable</value>
|
|
| 84 |
</property>
|
|
| 85 |
<property>
|
|
| 86 |
<name>mapred.output.key.class</name>
|
|
| 87 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 88 |
</property>
|
|
| 89 |
<property>
|
|
| 90 |
<name>mapred.output.value.class</name>
|
|
| 91 |
<value>org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat</value>
|
|
| 92 |
</property>
|
|
| 93 | 93 |
|
| 94 |
<!-- ## This is required for new MapReduce API usage -->
|
|
| 95 |
<property>
|
|
| 96 |
<name>mapred.mapper.new-api</name>
|
|
| 97 |
<value>true</value>
|
|
| 98 |
</property>
|
|
| 99 |
<property>
|
|
| 100 |
<name>mapred.reducer.new-api</name>
|
|
| 101 |
<value>true</value>
|
|
| 102 |
</property>
|
|
| 94 |
<!-- ## This is required for new MapReduce API usage -->
|
|
| 95 |
<property>
|
|
| 96 |
<name>mapred.mapper.new-api</name>
|
|
| 97 |
<value>true</value>
|
|
| 98 |
</property>
|
|
| 99 |
<property>
|
|
| 100 |
<name>mapred.reducer.new-api</name>
|
|
| 101 |
<value>true</value>
|
|
| 102 |
</property>
|
|
| 103 | 103 |
|
| 104 |
<!-- # Job-specific options -->
|
|
| 105 |
<property>
|
|
| 106 |
<name>dfs.blocksize</name>
|
|
| 107 |
<value>32M</value>
|
|
| 108 |
</property>
|
|
| 109 |
<property>
|
|
| 110 |
<name>mapred.output.compress</name>
|
|
| 111 |
<value>false</value>
|
|
| 112 |
</property>
|
|
| 113 |
<property>
|
|
| 114 |
<name>mapred.reduce.tasks.speculative.execution</name>
|
|
| 115 |
<value>false</value>
|
|
| 116 |
</property>
|
|
| 117 |
<property>
|
|
| 118 |
<name>mapred.reduce.tasks.speculative.execution</name>
|
|
| 119 |
<value>false</value>
|
|
| 120 |
</property>
|
|
| 104 |
<!-- # Job-specific options -->
|
|
| 105 |
<property>
|
|
| 106 |
<name>dfs.blocksize</name>
|
|
| 107 |
<value>32M</value>
|
|
| 108 |
</property>
|
|
| 109 |
<property>
|
|
| 110 |
<name>mapred.output.compress</name>
|
|
| 111 |
<value>false</value>
|
|
| 112 |
</property>
|
|
| 113 |
<property>
|
|
| 114 |
<name>mapred.reduce.tasks.speculative.execution</name>
|
|
| 115 |
<value>false</value>
|
|
| 116 |
</property>
|
|
| 117 |
<property>
|
|
| 118 |
<name>mapred.reduce.tasks.speculative.execution</name>
|
|
| 119 |
<value>false</value>
|
|
| 120 |
</property>
|
|
| 121 | 121 |
|
| 122 |
<property>
|
|
| 123 |
<name>mapreduce.map.speculative</name>
|
|
| 124 |
<value>false</value>
|
|
| 125 |
</property>
|
|
| 122 |
<property>
|
|
| 123 |
<name>mapreduce.map.speculative</name>
|
|
| 124 |
<value>false</value>
|
|
| 125 |
</property>
|
|
| 126 | 126 |
|
| 127 |
<!-- I/O FORMAT -->
|
|
| 128 |
<!-- IMPORTANT: sets default delimeter used by text output writer. Required
|
|
| 129 |
to fix issue with traling tab added between id and value in multiple outputs -->
|
|
| 130 |
<property>
|
|
| 131 |
<name>mapred.textoutputformat.separator</name>
|
|
| 132 |
<value>${lod_delim}</value>
|
|
| 133 |
</property>
|
|
| 134 |
<!-- ## Names of all output ports -->
|
|
| 127 |
<!-- I/O FORMAT -->
|
|
| 128 |
<!-- IMPORTANT: sets default delimeter used by text output writer. Required
|
|
| 129 |
to fix issue with traling tab added between id and value in multiple outputs -->
|
|
| 130 |
<property>
|
|
| 131 |
<name>mapred.textoutputformat.separator</name>
|
|
| 132 |
<value>${lod_delim}</value>
|
|
| 133 |
</property>
|
|
| 134 |
<!-- ## Names of all output ports -->
|
|
| 135 | 135 |
|
| 136 |
<property>
|
|
| 137 |
<name>mapreduce.multipleoutputs</name>
|
|
| 138 |
<value>
|
|
| 139 |
${out1} ${out2}
|
|
| 140 |
</value>
|
|
| 136 |
<property>
|
|
| 137 |
<name>mapreduce.multipleoutputs</name>
|
|
| 138 |
<value>
|
|
| 139 |
${out1} ${out2}
|
|
| 140 |
</value>
|
|
| 141 | 141 |
|
| 142 |
</property>
|
|
| 143 |
<property>
|
|
| 144 |
<name>mapreduce.multipleoutputs.namedOutput.${out1}.key</name>
|
|
| 145 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 146 |
</property>
|
|
| 147 |
<property>
|
|
| 148 |
<name>mapreduce.multipleoutputs.namedOutput.${out1}.value</name>
|
|
| 149 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 150 |
</property>
|
|
| 151 |
<property>
|
|
| 152 |
<name>mapreduce.multipleoutputs.namedOutput.${out1}.format</name>
|
|
| 153 |
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
|
| 154 |
</property>
|
|
| 155 |
<!-- datasourceLanguage -->
|
|
| 156 |
<property>
|
|
| 157 |
<name>mapreduce.multipleoutputs.namedOutput.${out2}.key</name>
|
|
| 158 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 159 |
</property>
|
|
| 160 |
<property>
|
|
| 161 |
<name>mapreduce.multipleoutputs.namedOutput.${out2}.value</name>
|
|
| 162 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 163 |
</property>
|
|
| 164 |
<property>
|
|
| 165 |
<name>mapreduce.multipleoutputs.namedOutput.${out2}.format</name>
|
|
| 166 |
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
|
| 167 |
</property>
|
|
| 142 |
</property>
|
|
| 143 |
<property>
|
|
| 144 |
<name>mapreduce.multipleoutputs.namedOutput.${out1}.key</name>
|
|
| 145 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 146 |
</property>
|
|
| 147 |
<property>
|
|
| 148 |
<name>mapreduce.multipleoutputs.namedOutput.${out1}.value</name>
|
|
| 149 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 150 |
</property>
|
|
| 151 |
<property>
|
|
| 152 |
<name>mapreduce.multipleoutputs.namedOutput.${out1}.format</name>
|
|
| 153 |
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
|
| 154 |
</property>
|
|
| 155 |
<!-- datasourceLanguage -->
|
|
| 156 |
<property>
|
|
| 157 |
<name>mapreduce.multipleoutputs.namedOutput.${out2}.key</name>
|
|
| 158 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 159 |
</property>
|
|
| 160 |
<property>
|
|
| 161 |
<name>mapreduce.multipleoutputs.namedOutput.${out2}.value</name>
|
|
| 162 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 163 |
</property>
|
|
| 164 |
<property>
|
|
| 165 |
<name>mapreduce.multipleoutputs.namedOutput.${out2}.format</name>
|
|
| 166 |
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
|
| 167 |
</property>
|
|
| 168 | 168 |
|
| 169 | 169 |
|
| 170 |
<!-- ## Classes of mapper and reducer -->
|
|
| 170 |
<!-- ## Classes of mapper and reducer -->
|
|
| 171 | 171 |
|
| 172 |
<property>
|
|
| 173 |
<name>mapreduce.map.class</name>
|
|
| 174 |
<value>eu.dnetlib.data.mapreduce.hbase.lodExport.LodMapper</value>
|
|
| 175 |
</property>
|
|
| 176 |
<property>
|
|
| 177 |
<name>mapreduce.reduce.class</name>
|
|
| 178 |
<value>eu.dnetlib.data.mapreduce.hbase.lodExport.LodReducer</value>
|
|
| 179 |
</property>
|
|
| 180 |
<property>
|
|
| 181 |
<name>io.serializations</name>
|
|
| 182 |
<value>org.apache.hadoop.io.serializer.WritableSerialization</value>
|
|
| 183 |
</property>
|
|
| 172 |
<property>
|
|
| 173 |
<name>mapreduce.map.class</name>
|
|
| 174 |
<value>eu.dnetlib.data.mapreduce.hbase.lodExport.LodMapper</value>
|
|
| 175 |
</property>
|
|
| 176 |
<property>
|
|
| 177 |
<name>mapreduce.reduce.class</name>
|
|
| 178 |
<value>eu.dnetlib.data.mapreduce.hbase.lodExport.LodReducer</value>
|
|
| 179 |
</property>
|
|
| 180 |
<property>
|
|
| 181 |
<name>io.serializations</name>
|
|
| 182 |
<value>org.apache.hadoop.io.serializer.WritableSerialization</value>
|
|
| 183 |
</property>
|
|
| 184 | 184 |
|
| 185 |
<!-- ## Custom config -->
|
|
| 185 |
<!-- ## Custom config -->
|
|
| 186 | 186 |
|
| 187 |
<!--delim character used to seperate fields in hdfs dump files <property> -->
|
|
| 188 |
<property>
|
|
| 189 |
<name>lod.delim</name>
|
|
| 190 |
<value>${lod_delim}</value>
|
|
| 191 |
</property>
|
|
| 187 |
<!--delim character used to seperate fields in hdfs dump files <property> -->
|
|
| 188 |
<property>
|
|
| 189 |
<name>lod.delim</name>
|
|
| 190 |
<value>${lod_delim}</value>
|
|
| 191 |
</property>
|
|
| 192 | 192 |
|
| 193 |
<property>
|
|
| 194 |
<name>lod.enclosing</name>
|
|
| 195 |
<value>${lod_enclosing}</value>
|
|
| 196 |
</property>
|
|
| 193 |
<property>
|
|
| 194 |
<name>lod.enclosing</name>
|
|
| 195 |
<value>${lod_enclosing}</value>
|
|
| 196 |
</property>
|
|
| 197 | 197 |
|
| 198 | 198 |
|
| 199 |
<property>
|
|
| 200 |
<name>lod.seperator</name>
|
|
| 201 |
<value>${lod_seperator}</value>
|
|
| 202 |
</property>
|
|
| 199 |
<property>
|
|
| 200 |
<name>lod.seperator</name>
|
|
| 201 |
<value>${lod_seperator}</value>
|
|
| 202 |
</property>
|
|
| 203 | 203 |
|
| 204 | 204 |
|
| 205 |
<!--source hbase table -->
|
|
| 206 |
<property>
|
|
| 207 |
<name>hbase.mapreduce.inputtable</name>
|
|
| 208 |
<value>${lod_hbase_table}</value>
|
|
| 209 |
</property>
|
|
| 210 |
<property>
|
|
| 211 |
<name>hbase.mapred.inputtable</name>
|
|
| 212 |
<value>${lod_hbase_table}</value>
|
|
| 213 |
</property>
|
|
| 205 |
<!--source hbase table -->
|
|
| 206 |
<property>
|
|
| 207 |
<name>hbase.mapreduce.inputtable</name>
|
|
| 208 |
<value>${lod_hbase_table}</value>
|
|
| 209 |
</property>
|
|
| 210 |
<property>
|
|
| 211 |
<name>hbase.mapred.inputtable</name>
|
|
| 212 |
<value>${lod_hbase_table}</value>
|
|
| 213 |
</property>
|
|
| 214 | 214 |
|
| 215 |
<!-- This directory does not correspond to a data store. In fact, this
|
|
| 216 |
directory only contains multiple data stores. It has to be set to the name
|
|
| 217 |
of the workflow node. -->
|
|
| 218 |
<property>
|
|
| 219 |
<name>mapred.output.dir</name>
|
|
| 220 |
<value>${lod_output}</value>
|
|
| 221 |
</property>
|
|
| 222 |
<property>
|
|
| 223 |
<name>index.conf</name>
|
|
| 224 |
<value>${lod_indexConf}</value>
|
|
| 225 |
</property>
|
|
| 215 |
<!-- This directory does not correspond to a data store. In fact, this
|
|
| 216 |
directory only contains multiple data stores. It has to be set to the name
|
|
| 217 |
of the workflow node. -->
|
|
| 218 |
<property>
|
|
| 219 |
<name>mapred.output.dir</name>
|
|
| 220 |
<value>${lod_output}</value>
|
|
| 221 |
</property>
|
|
| 222 |
<property>
|
|
| 223 |
<name>index.conf</name>
|
|
| 224 |
<value>${lod_indexConf}</value>
|
|
| 225 |
</property>
|
|
| 226 | 226 |
|
| 227 |
<property>
|
|
| 228 |
<name>lod.lastExecutionDate</name>
|
|
| 229 |
<value>${lod_lastExecutionDate}</value>
|
|
| 230 |
</property>
|
|
| 227 |
<property>
|
|
| 228 |
<name>lod.lastExecutionDate</name>
|
|
| 229 |
<value>${lod_lastExecutionDate}</value>
|
|
| 230 |
</property>
|
|
| 231 | 231 |
|
| 232 |
<!-- ## Workflow node parameters -->
|
|
| 233 |
<property>
|
|
| 234 |
<name>mapred.reduce.tasks</name>
|
|
| 235 |
<value>${numReducers}</value>
|
|
| 236 |
</property>
|
|
| 232 |
<!-- ## Workflow node parameters -->
|
|
| 233 |
<property>
|
|
| 234 |
<name>mapred.reduce.tasks</name>
|
|
| 235 |
<value>${numReducers}</value>
|
|
| 236 |
</property>
|
|
| 237 | 237 |
|
| 238 |
</configuration>
|
|
| 238 |
</configuration>
|
|
| 239 | 239 |
|
| 240 |
</map-reduce>
|
|
| 241 |
<ok to="end" />
|
|
| 240 |
</map-reduce>
|
|
| 241 |
<ok to="end"/>
|
|
| 242 | 242 |
|
| 243 |
<error to="fail" />
|
|
| 244 |
</action>
|
|
| 243 |
<error to="fail"/>
|
|
| 244 |
</action>
|
|
| 245 | 245 |
|
| 246 | 246 |
|
| 247 |
<action name='clearGraph'> |
|
| 248 |
<java> |
|
| 249 |
<prepare> |
|
| 250 |
</prepare> |
|
| 251 |
<configuration> |
|
| 252 |
<property> |
|
| 253 |
<name>mapred.job.queue.name</name> |
|
| 254 |
<value>${queueName}</value>
|
|
| 255 |
</property> |
|
| 256 |
</configuration> |
|
| 257 |
<main-class>eu.dnetlib.iis.core.workflows.lodexport.ClearGraph</main-class> |
|
| 258 |
<arg>${lod_conLine}</arg>
|
|
| 259 |
<arg>${lod_username}</arg>
|
|
| 260 |
<arg>${lod_password}</arg>
|
|
| 261 |
<arg>${lod_minCpart}</arg>
|
|
| 262 |
<arg>${lod_maxCpart}</arg>
|
|
| 263 |
<arg>${lod_part}</arg>
|
|
| 264 |
<arg>${lod_relationsGraph}</arg>
|
|
| 265 |
</java> |
|
| 266 |
<ok to="rdf_entities_import"/> |
|
| 247 | 267 |
|
| 248 |
<action name='clearGraph'> |
|
| 249 |
<java> |
|
| 250 |
<prepare> |
|
| 251 |
</prepare> |
|
| 252 |
<configuration> |
|
| 253 |
<property> |
|
| 254 |
<name>mapred.job.queue.name</name> |
|
| 255 |
<value>${queueName}</value>
|
|
| 256 |
</property> |
|
| 257 |
</configuration> |
|
| 258 |
<main-class>eu.dnetlib.iis.core.workflows.lodexport.ClearGraph</main-class> |
|
| 259 |
<arg>${lod_conLine}</arg>
|
|
| 260 |
<arg>${lod_username}</arg>
|
|
| 261 |
<arg>${lod_password}</arg>
|
|
| 262 |
<arg>${lod_minCpart}</arg>
|
|
| 263 |
<arg>${lod_maxCpart}</arg>
|
|
| 264 |
<arg>${lod_part}</arg>
|
|
| 265 |
<arg>${lod_relationsGraph}</arg>
|
|
| 266 |
</java> |
|
| 267 |
<ok to="rdf_entities_import" /> |
|
| 268 |
<error to="fail"/> |
|
| 269 |
</action> |
|
| 268 | 270 |
|
| 269 |
<error to="fail" /> |
|
| 270 |
</action> |
|
| 271 |
<action name="rdf_entities_import"> |
|
| 271 | 272 |
|
| 272 |
<action name="rdf_entities_import">
|
|
| 273 |
<map-reduce>
|
|
| 273 | 274 |
|
| 274 |
<map-reduce> |
|
| 275 |
<prepare> |
|
| 276 |
<delete path="${nameNode}${lod_output}test"/>
|
|
| 277 |
</prepare> |
|
| 275 | 278 |
|
| 276 |
<prepare> |
|
| 277 |
<delete path="${nameNode}${lod_output}test" />
|
|
| 278 |
</prepare> |
|
| 279 |
<configuration> |
|
| 280 |
<property> |
|
| 281 |
<name>hbase.security.authentication</name> |
|
| 282 |
<value>simple</value> |
|
| 283 |
</property> |
|
| 279 | 284 |
|
| 280 |
<configuration> |
|
| 281 |
<property> |
|
| 282 |
<name>hbase.security.authentication</name> |
|
| 283 |
<value>simple</value> |
|
| 284 |
</property> |
|
| 285 |
<!-- ZOOKEEPER --> |
|
| 286 |
<property> |
|
| 287 |
<name>hbase.zookeeper.quorum</name> |
|
| 288 |
<!--<value> namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu |
|
| 289 |
</value> --> |
|
| 290 |
<value> |
|
| 291 |
quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu |
|
| 292 |
</value> |
|
| 293 |
</property> |
|
| 294 |
<property> |
|
| 295 |
<name>zookeeper.znode.rootserver</name> |
|
| 296 |
<value>root-region-server</value> |
|
| 297 |
</property> |
|
| 285 | 298 |
|
| 286 |
<!-- ZOOKEEPER --> |
|
| 287 |
<property> |
|
| 288 |
<name>hbase.zookeeper.quorum</name> |
|
| 289 |
<!--<value> namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu |
|
| 290 |
</value> --> |
|
| 291 |
<value> |
|
| 292 |
quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu |
|
| 293 |
</value> |
|
| 294 |
</property> |
|
| 295 |
<property> |
|
| 296 |
<name>zookeeper.znode.rootserver</name> |
|
| 297 |
<value>root-region-server</value> |
|
| 298 |
</property> |
|
| 299 |
<!-- CSV PROPS GO HERE --> |
|
| 300 |
<property> |
|
| 301 |
<name>hbase.zookeeper.property.clientPort</name> |
|
| 302 |
<value>2181</value> |
|
| 303 |
<!--<value>2182</value> --> |
|
| 304 |
</property> |
|
| 299 | 305 |
|
| 300 |
<!-- CSV PROPS GO HERE --> |
|
| 301 |
<property> |
|
| 302 |
<name>hbase.zookeeper.property.clientPort</name> |
|
| 303 |
<value>2181</value> |
|
| 304 |
<!--<value>2182</value> --> |
|
| 305 |
</property> |
|
| 306 | 306 |
|
| 307 |
<!-- MR IO --> |
|
| 307 | 308 |
|
| 309 |
<property> |
|
| 310 |
<name>mapred.input.dir</name> |
|
| 311 |
<value>${lod_EntitiesInputFile}</value>
|
|
| 312 |
</property> |
|
| 308 | 313 |
|
| 309 |
<!-- MR IO --> |
|
| 310 | 314 |
|
| 311 |
<property>
|
|
| 312 |
<name>mapred.input.dir</name>
|
|
| 313 |
<value>${lod_EntitiesInputFile}</value>
|
|
| 314 |
</property>
|
|
| 315 |
<property>
|
|
| 316 |
<name>mapreduce.inputformat.class</name>
|
|
| 317 |
<value>org.apache.hadoop.mapreduce.lib.input.TextInputFormat</value>
|
|
| 318 |
</property>
|
|
| 315 | 319 |
|
| 320 |
<property> |
|
| 321 |
<name>mapred.mapoutput.key.class</name> |
|
| 322 |
<value>org.apache.hadoop.io.Text</value> |
|
| 323 |
</property> |
|
| 316 | 324 |
|
| 325 |
<property> |
|
| 326 |
<name>mapred.mapoutput.value.class</name> |
|
| 327 |
<value>org.apache.hadoop.io.Text</value> |
|
| 328 |
</property> |
|
| 317 | 329 |
|
| 318 |
<property>
|
|
| 319 |
<name>mapreduce.inputformat.class</name>
|
|
| 320 |
<value>org.apache.hadoop.mapreduce.lib.input.TextInputFormat</value>
|
|
| 321 |
</property>
|
|
| 330 |
<property>
|
|
| 331 |
<name>mapred.output.key.class</name>
|
|
| 332 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value>
|
|
| 333 |
</property>
|
|
| 322 | 334 |
|
| 323 |
<property>
|
|
| 324 |
<name>mapred.mapoutput.key.class</name>
|
|
| 325 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 326 |
</property>
|
|
| 335 |
<property>
|
|
| 336 |
<name>mapred.output.value.class</name>
|
|
| 337 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value>
|
|
| 338 |
</property>
|
|
| 327 | 339 |
|
| 328 |
<property> |
|
| 329 |
<name>mapred.mapoutput.value.class</name> |
|
| 330 |
<value>org.apache.hadoop.io.Text</value> |
|
| 331 |
</property> |
|
| 340 |
<!-- ## This is required for new MapReduce API usage --> |
|
| 341 |
<property> |
|
| 342 |
<name>mapred.mapper.new-api</name> |
|
| 343 |
<value>true</value> |
|
| 344 |
</property> |
|
| 345 |
<property> |
|
| 346 |
<name>mapred.reducer.new-api</name> |
|
| 347 |
<value>true</value> |
|
| 348 |
</property> |
|
| 332 | 349 |
|
| 333 |
<property> |
|
| 334 |
<name>mapred.output.key.class</name> |
|
| 335 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value> |
|
| 336 |
</property> |
|
| 350 |
<!-- # Job-specific options --> |
|
| 351 |
<property> |
|
| 352 |
<name>dfs.blocksize</name> |
|
| 353 |
<value>32M</value> |
|
| 354 |
</property> |
|
| 355 |
<property> |
|
| 356 |
<name>mapred.output.compress</name> |
|
| 357 |
<value>false</value> |
|
| 358 |
</property> |
|
| 359 |
<property> |
|
| 360 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 361 |
<value>false</value> |
|
| 362 |
</property> |
|
| 363 |
<property> |
|
| 364 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 365 |
<value>false</value> |
|
| 366 |
</property> |
|
| 367 |
<property> |
|
| 368 |
<name>mapreduce.map.speculative</name> |
|
| 369 |
<value>false</value> |
|
| 370 |
</property> |
|
| 337 | 371 |
|
| 338 |
<property> |
|
| 339 |
<name>mapred.output.value.class</name> |
|
| 340 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value> |
|
| 341 |
</property> |
|
| 342 | 372 |
|
| 343 |
<!-- ## This is required for new MapReduce API usage --> |
|
| 344 |
<property> |
|
| 345 |
<name>mapred.mapper.new-api</name> |
|
| 346 |
<value>true</value> |
|
| 347 |
</property> |
|
| 348 |
<property> |
|
| 349 |
<name>mapred.reducer.new-api</name> |
|
| 350 |
<value>true</value> |
|
| 351 |
</property> |
|
| 373 |
<property> |
|
| 374 |
<name>map.output.key.field.separator</name> |
|
| 375 |
<value>${lod_delim}</value>
|
|
| 376 |
</property> |
|
| 352 | 377 |
|
| 353 |
<!-- # Job-specific options --> |
|
| 354 |
<property> |
|
| 355 |
<name>dfs.blocksize</name> |
|
| 356 |
<value>32M</value> |
|
| 357 |
</property> |
|
| 358 |
<property> |
|
| 359 |
<name>mapred.output.compress</name> |
|
| 360 |
<value>false</value> |
|
| 361 |
</property> |
|
| 362 |
<property> |
|
| 363 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 364 |
<value>false</value> |
|
| 365 |
</property> |
|
| 366 |
<property> |
|
| 367 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 368 |
<value>false</value> |
|
| 369 |
</property> |
|
| 370 |
<property> |
|
| 371 |
<name>mapreduce.map.speculative</name> |
|
| 372 |
<value>false</value> |
|
| 373 |
</property> |
|
| 374 | 378 |
|
| 379 |
<!-- ## Classes of mapper and reducer --> |
|
| 380 |
<property> |
|
| 381 |
<name>mapreduce.map.class</name> |
|
| 382 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportMapper</value> |
|
| 383 |
</property> |
|
| 375 | 384 |
|
| 376 |
<property> |
|
| 377 |
<name>map.output.key.field.separator</name> |
|
| 378 |
<value>${lod_delim}</value>
|
|
| 379 |
</property> |
|
| 385 |
<property> |
|
| 386 |
<name>mapreduce.reduce.class</name> |
|
| 380 | 387 |
|
| 388 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportReducer</value> |
|
| 389 |
</property> |
|
| 381 | 390 |
|
| 382 |
<!-- ## Classes of mapper and reducer --> |
|
| 383 |
<property> |
|
| 384 |
<name>mapreduce.map.class</name> |
|
| 385 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportMapper</value> |
|
| 386 |
</property> |
|
| 391 |
<property> |
|
| 387 | 392 |
|
| 388 |
<property> |
|
| 389 |
<name>mapreduce.reduce.class</name> |
|
| 393 |
<name>io.serializations</name> |
|
| 394 |
<value>org.apache.hadoop.io.serializer.WritableSerialization</value> |
|
| 395 |
</property> |
|
| 390 | 396 |
|
| 391 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportReducer</value>
|
|
| 392 |
</property>
|
|
| 397 |
<!-- ## Custom config -->
|
|
| 398 |
<!--delim character used to seperate fields in hdfs dump files <property> -->
|
|
| 393 | 399 |
|
| 394 |
<property> |
|
| 400 |
<property> |
|
| 401 |
<name>lod.delim</name> |
|
| 402 |
<value>${lod_delim}</value>
|
|
| 403 |
</property> |
|
| 395 | 404 |
|
| 396 |
<name>io.serializations</name> |
|
| 397 |
<value>org.apache.hadoop.io.serializer.WritableSerialization</value> |
|
| 398 |
</property> |
|
| 405 |
<property> |
|
| 406 |
<name>lod.enclosing</name> |
|
| 407 |
<value>${lod_enclosing}</value>
|
|
| 408 |
</property> |
|
| 399 | 409 |
|
| 400 |
<!-- ## Custom config --> |
|
| 401 |
<!--delim character used to seperate fields in hdfs dump files <property> --> |
|
| 410 |
<property> |
|
| 411 |
<name>lod.seperator</name> |
|
| 412 |
<value>${lod_seperator}</value>
|
|
| 413 |
</property> |
|
| 402 | 414 |
|
| 403 |
<property>
|
|
| 404 |
<name>lod.delim</name>
|
|
| 405 |
<value>${lod_delim}</value>
|
|
| 406 |
</property>
|
|
| 415 |
<property>
|
|
| 416 |
<name>lod.lastExecutionDate</name>
|
|
| 417 |
<value>${lod_lastExecutionDate}</value>
|
|
| 418 |
</property>
|
|
| 407 | 419 |
|
| 408 |
<property>
|
|
| 409 |
<name>lod.enclosing</name>
|
|
| 410 |
<value>${lod_enclosing}</value>
|
|
| 411 |
</property>
|
|
| 420 |
<property>
|
|
| 421 |
<name>lod.conLine</name>
|
|
| 422 |
<value>${lod_conLine}</value>
|
|
| 423 |
</property>
|
|
| 412 | 424 |
|
| 413 |
<property>
|
|
| 414 |
<name>lod.seperator</name>
|
|
| 415 |
<value>${lod_seperator}</value>
|
|
| 416 |
</property>
|
|
| 425 |
<property>
|
|
| 426 |
<name>lod.username</name>
|
|
| 427 |
<value>${lod_username}</value>
|
|
| 428 |
</property>
|
|
| 417 | 429 |
|
| 418 |
<property>
|
|
| 419 |
<name>lod.lastExecutionDate</name>
|
|
| 420 |
<value>${lod_lastExecutionDate}</value>
|
|
| 421 |
</property>
|
|
| 430 |
<property>
|
|
| 431 |
<name>lod.password</name>
|
|
| 432 |
<value>${lod_password}</value>
|
|
| 433 |
</property>
|
|
| 422 | 434 |
|
| 423 |
<property>
|
|
| 424 |
<name>lod.conLine</name>
|
|
| 425 |
<value>${lod_conLine}</value>
|
|
| 426 |
</property>
|
|
| 435 |
<property>
|
|
| 436 |
<name>lod.minCpart</name>
|
|
| 437 |
<value>${lod_minCpart}</value>
|
|
| 438 |
</property>
|
|
| 427 | 439 |
|
| 428 |
<property>
|
|
| 429 |
<name>lod.username</name>
|
|
| 430 |
<value>${lod_username}</value>
|
|
| 431 |
</property>
|
|
| 440 |
<property>
|
|
| 441 |
<name>lod.maxCpart</name>
|
|
| 442 |
<value>${lod_maxCpart}</value>
|
|
| 443 |
</property>
|
|
| 432 | 444 |
|
| 433 |
<property>
|
|
| 434 |
<name>lod.password</name>
|
|
| 435 |
<value>${lod_password}</value>
|
|
| 436 |
</property>
|
|
| 445 |
<property>
|
|
| 446 |
<name>lod.part</name>
|
|
| 447 |
<value>${lod_part}</value>
|
|
| 448 |
</property>
|
|
| 437 | 449 |
|
| 438 |
<property>
|
|
| 439 |
<name>lod.minCpart</name>
|
|
| 440 |
<value>${lod_minCpart}</value>
|
|
| 441 |
</property>
|
|
| 450 |
<property>
|
|
| 451 |
<name>lod.jsonRels</name>
|
|
| 452 |
<value>${lod_jsonRels}</value>
|
|
| 453 |
</property>
|
|
| 442 | 454 |
|
| 443 |
<property>
|
|
| 444 |
<name>lod.maxCpart</name>
|
|
| 445 |
<value>${lod_maxCpart}</value>
|
|
| 446 |
</property>
|
|
| 455 |
<property>
|
|
| 456 |
<name>lod.jsonEntities</name>
|
|
| 457 |
<value>${lod_jsonEntities}</value>
|
|
| 458 |
</property>
|
|
| 447 | 459 |
|
| 448 |
<property>
|
|
| 449 |
<name>lod.part</name>
|
|
| 450 |
<value>${lod_part}</value>
|
|
| 451 |
</property>
|
|
| 460 |
<property>
|
|
| 461 |
<name>lod.defaultGraph</name>
|
|
| 462 |
<value>${lod_defaultGraph}</value>
|
|
| 463 |
</property>
|
|
| 452 | 464 |
|
| 453 |
<property> |
|
| 454 |
<name>lod.jsonRels</name> |
|
| 455 |
<value>${lod_jsonRels}</value>
|
|
| 456 |
</property> |
|
| 457 | 465 |
|
| 458 |
<property>
|
|
| 459 |
<name>lod.jsonEntities</name>
|
|
| 460 |
<value>${lod_jsonEntities}</value>
|
|
| 461 |
</property>
|
|
| 466 |
<property>
|
|
| 467 |
<name>lod.relationsGraph</name>
|
|
| 468 |
<value>${lod_relationsGraph}</value>
|
|
| 469 |
</property>
|
|
| 462 | 470 |
|
| 463 |
<property> |
|
| 464 |
<name>lod.defaultGraph</name> |
|
| 465 |
<value>${lod_defaultGraph}</value>
|
|
| 466 |
</property> |
|
| 467 | 471 |
|
| 472 |
<property> |
|
| 473 |
<name>lod.baseURI</name> |
|
| 474 |
<value>${lod_baseURI}</value>
|
|
| 475 |
</property> |
|
| 468 | 476 |
|
| 469 |
<property>
|
|
| 470 |
<name>lod.relationsGraph</name>
|
|
| 471 |
<value>${lod_relationsGraph}</value>
|
|
| 472 |
</property>
|
|
| 477 |
<property>
|
|
| 478 |
<name>mapred.reduce.tasks</name>
|
|
| 479 |
<value>${numReducers}</value>
|
|
| 480 |
</property>
|
|
| 473 | 481 |
|
| 482 |
<property> |
|
| 483 |
<name>lod.inputFile</name> |
|
| 484 |
<value>${lod_EntitiesInputFile}</value>
|
|
| 485 |
</property> |
|
| 474 | 486 |
|
| 475 |
<property>
|
|
| 476 |
<name>lod.baseURI</name>
|
|
| 477 |
<value>${lod_baseURI}</value>
|
|
| 478 |
</property>
|
|
| 487 |
<property>
|
|
| 488 |
<name>mapred.output.dir</name>
|
|
| 489 |
<value>${lod_output}test</value>
|
|
| 490 |
</property>
|
|
| 479 | 491 |
|
| 480 |
<property> |
|
| 481 |
<name>mapred.reduce.tasks</name> |
|
| 482 |
<value>${numReducers}</value>
|
|
| 483 |
</property> |
|
| 492 |
<property> |
|
| 493 |
<name>lod.entitiesPerQuery</name> |
|
| 494 |
<value>${lod_entitiesPerQuery}</value>
|
|
| 495 |
</property> |
|
| 496 |
<property> |
|
| 497 |
<name>lod.relationsPerQuery</name> |
|
| 498 |
<value>${lod_relationsPerQuery}</value>
|
|
| 499 |
</property> |
|
| 484 | 500 |
|
| 485 |
<property>
|
|
| 486 |
<name>lod.inputFile</name>
|
|
| 487 |
<value>${lod_EntitiesInputFile}</value>
|
|
| 488 |
</property>
|
|
| 501 |
<property>
|
|
| 502 |
<name>lod.dataPath</name>
|
|
| 503 |
<value>${lod_dataPath}</value>
|
|
| 504 |
</property>
|
|
| 489 | 505 |
|
| 490 |
<property> |
|
| 491 |
<name>mapred.output.dir</name> |
|
| 492 |
<value>${lod_output}test</value>
|
|
| 493 |
</property> |
|
| 494 | 506 |
|
| 495 |
<property> |
|
| 496 |
<name>lod.entitiesPerQuery</name> |
|
| 497 |
<value>${lod_entitiesPerQuery}</value>
|
|
| 498 |
</property> |
|
| 499 |
<property> |
|
| 500 |
<name>lod.relationsPerQuery</name> |
|
| 501 |
<value>${lod_relationsPerQuery}</value>
|
|
| 502 |
</property> |
|
| 507 |
</configuration> |
|
| 508 |
</map-reduce> |
|
| 503 | 509 |
|
| 504 |
<property> |
|
| 505 |
<name>lod.dataPath</name> |
|
| 506 |
<value>${lod_dataPath}</value>
|
|
| 507 |
</property> |
|
| 510 |
<ok to="rdf_relations_import"/> |
|
| 508 | 511 |
|
| 512 |
<error to="fail"/> |
|
| 513 |
</action> |
|
| 509 | 514 |
|
| 510 |
</configuration> |
|
| 511 |
</map-reduce> |
|
| 512 | 515 |
|
| 513 |
<ok to="rdf_relations_import" />
|
|
| 516 |
<action name="rdf_relations_import">
|
|
| 514 | 517 |
|
| 515 |
<error to="fail" /> |
|
| 516 |
</action> |
|
| 518 |
<map-reduce> |
|
| 517 | 519 |
|
| 520 |
<prepare> |
|
| 521 |
<delete path="${nameNode}${lod_output}test"/>
|
|
| 522 |
</prepare> |
|
| 518 | 523 |
|
| 519 | 524 |
|
| 525 |
<configuration> |
|
| 520 | 526 |
|
| 521 |
<action name="rdf_relations_import"> |
|
| 527 |
<property> |
|
| 528 |
<name>hbase.security.authentication</name> |
|
| 529 |
<value>simple</value> |
|
| 530 |
</property> |
|
| 522 | 531 |
|
| 523 |
<map-reduce> |
|
| 524 | 532 |
|
| 525 |
<prepare> |
|
| 526 |
<delete path="${nameNode}${lod_output}test" />
|
|
| 527 |
</prepare> |
|
| 533 |
<!-- ZOOKEEPER --> |
|
| 534 |
<property> |
|
| 535 |
<name>hbase.zookeeper.quorum</name> |
|
| 536 |
<!--<value> namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu |
|
| 537 |
</value> --> |
|
| 538 |
<value> |
|
| 539 |
quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu |
|
| 540 |
</value> |
|
| 541 |
</property> |
|
| 542 |
<property> |
|
| 543 |
<name>zookeeper.znode.rootserver</name> |
|
| 544 |
<value>root-region-server</value> |
|
| 545 |
</property> |
|
| 528 | 546 |
|
| 547 |
<!-- CSV PROPS GO HERE --> |
|
| 548 |
<property> |
|
| 549 |
<name>hbase.zookeeper.property.clientPort</name> |
|
| 550 |
<value>2181</value> |
|
| 551 |
<!--<value>2182</value> --> |
|
| 552 |
</property> |
|
| 529 | 553 |
|
| 530 |
<configuration> |
|
| 531 | 554 |
|
| 532 |
<property> |
|
| 533 |
<name>hbase.security.authentication</name> |
|
| 534 |
<value>simple</value> |
|
| 535 |
</property> |
|
| 555 |
<!-- MR IO --> |
|
| 536 | 556 |
|
| 557 |
<property> |
|
| 558 |
<name>mapred.input.dir</name> |
|
| 559 |
<value>${lod_RelationsInputFile}</value>
|
|
| 560 |
</property> |
|
| 537 | 561 |
|
| 538 |
<!-- ZOOKEEPER --> |
|
| 539 |
<property> |
|
| 540 |
<name>hbase.zookeeper.quorum</name> |
|
| 541 |
<!--<value> namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu |
|
| 542 |
</value> --> |
|
| 543 |
<value> |
|
| 544 |
quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu |
|
| 545 |
</value> |
|
| 546 |
</property> |
|
| 547 |
<property> |
|
| 548 |
<name>zookeeper.znode.rootserver</name> |
|
| 549 |
<value>root-region-server</value> |
|
| 550 |
</property> |
|
| 562 |
<property> |
|
| 563 |
<name>mapreduce.inputformat.class</name> |
|
| 564 |
<value>org.apache.hadoop.mapreduce.lib.input.TextInputFormat</value> |
|
| 565 |
</property> |
|
| 551 | 566 |
|
| 552 |
<!-- CSV PROPS GO HERE --> |
|
| 553 |
<property> |
|
| 554 |
<name>hbase.zookeeper.property.clientPort</name> |
|
| 555 |
<value>2181</value> |
|
| 556 |
<!--<value>2182</value> --> |
|
| 557 |
</property> |
|
| 567 |
<property> |
|
| 568 |
<name>mapred.mapoutput.key.class</name> |
|
| 569 |
<value>org.apache.hadoop.io.Text</value> |
|
| 570 |
</property> |
|
| 558 | 571 |
|
| 572 |
<property> |
|
| 573 |
<name>mapred.mapoutput.value.class</name> |
|
| 574 |
<value>org.apache.hadoop.io.Text</value> |
|
| 575 |
</property> |
|
| 559 | 576 |
|
| 577 |
<property> |
|
| 578 |
<name>mapred.output.key.class</name> |
|
| 579 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value> |
|
| 580 |
</property> |
|
| 560 | 581 |
|
| 561 |
<!-- MR IO --> |
|
| 582 |
<property> |
|
| 583 |
<name>mapred.output.value.class</name> |
|
| 584 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value> |
|
| 585 |
</property> |
|
| 562 | 586 |
|
| 563 |
<property> |
|
| 564 |
<name>mapred.input.dir</name> |
|
| 565 |
<value>${lod_RelationsInputFile}</value>
|
|
| 566 |
</property> |
|
| 587 |
<!-- ## This is required for new MapReduce API usage --> |
|
| 588 |
<property> |
|
| 589 |
<name>mapred.mapper.new-api</name> |
|
| 590 |
<value>true</value> |
|
| 591 |
</property> |
|
| 592 |
<property> |
|
| 593 |
<name>mapred.reducer.new-api</name> |
|
| 594 |
<value>true</value> |
|
| 595 |
</property> |
|
| 567 | 596 |
|
| 568 |
<property> |
|
| 569 |
<name>mapreduce.inputformat.class</name> |
|
| 570 |
<value>org.apache.hadoop.mapreduce.lib.input.TextInputFormat</value> |
|
| 571 |
</property> |
|
| 597 |
<!-- # Job-specific options --> |
|
| 598 |
<property> |
|
| 599 |
<name>dfs.blocksize</name> |
|
| 600 |
<value>32M</value> |
|
| 601 |
</property> |
|
| 602 |
<property> |
|
| 603 |
<name>mapred.output.compress</name> |
|
| 604 |
<value>false</value> |
|
| 605 |
</property> |
|
| 606 |
<property> |
|
| 607 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 608 |
<value>false</value> |
|
| 609 |
</property> |
|
| 610 |
<property> |
|
| 611 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 612 |
<value>false</value> |
|
| 613 |
</property> |
|
| 614 |
<property> |
|
| 615 |
<name>mapreduce.map.speculative</name> |
|
| 616 |
<value>false</value> |
|
| 617 |
</property> |
|
| 572 | 618 |
|
| 573 |
<property> |
|
| 574 |
<name>mapred.mapoutput.key.class</name> |
|
| 575 |
<value>org.apache.hadoop.io.Text</value> |
|
| 576 |
</property> |
|
| 577 | 619 |
|
| 578 |
<property>
|
|
| 579 |
<name>mapred.mapoutput.value.class</name>
|
|
| 580 |
<value>org.apache.hadoop.io.Text</value>
|
|
| 581 |
</property>
|
|
| 620 |
<property>
|
|
| 621 |
<name>map.output.key.field.separator</name>
|
|
| 622 |
<value>${lod_delim}</value>
|
|
| 623 |
</property>
|
|
| 582 | 624 |
|
| 583 |
<property> |
|
| 584 |
<name>mapred.output.key.class</name> |
|
| 585 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value> |
|
| 586 |
</property> |
|
| 587 | 625 |
|
| 588 |
<property> |
|
| 589 |
<name>mapred.output.value.class</name> |
|
| 590 |
<value>org.apache.hadoop.mapreduce.lib.output.NullOutputFormat</value> |
|
| 591 |
</property> |
|
| 626 |
<!-- ## Classes of mapper and reducer --> |
|
| 627 |
<property> |
|
| 628 |
<name>mapreduce.map.class</name> |
|
| 629 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportMapper</value> |
|
| 630 |
</property> |
|
| 592 | 631 |
|
| 593 |
<!-- ## This is required for new MapReduce API usage --> |
|
| 594 |
<property> |
|
| 595 |
<name>mapred.mapper.new-api</name> |
|
| 596 |
<value>true</value> |
|
| 597 |
</property> |
|
| 598 |
<property> |
|
| 599 |
<name>mapred.reducer.new-api</name> |
|
| 600 |
<value>true</value> |
|
| 601 |
</property> |
|
| 632 |
<property> |
|
| 633 |
<name>mapreduce.reduce.class</name> |
|
| 602 | 634 |
|
| 603 |
<!-- # Job-specific options --> |
|
| 604 |
<property> |
|
| 605 |
<name>dfs.blocksize</name> |
|
| 606 |
<value>32M</value> |
|
| 607 |
</property> |
|
| 608 |
<property> |
|
| 609 |
<name>mapred.output.compress</name> |
|
| 610 |
<value>false</value> |
|
| 611 |
</property> |
|
| 612 |
<property> |
|
| 613 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 614 |
<value>false</value> |
|
| 615 |
</property> |
|
| 616 |
<property> |
|
| 617 |
<name>mapred.reduce.tasks.speculative.execution</name> |
|
| 618 |
<value>false</value> |
|
| 619 |
</property> |
|
| 620 |
<property> |
|
| 621 |
<name>mapreduce.map.speculative</name> |
|
| 622 |
<value>false</value> |
|
| 623 |
</property> |
|
| 635 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportReducer</value> |
|
| 636 |
</property> |
|
| 624 | 637 |
|
| 638 |
<property> |
|
| 625 | 639 |
|
| 626 |
<property> |
|
| 627 |
<name>map.output.key.field.separator</name> |
|
| 628 |
<value>${lod_delim}</value>
|
|
| 629 |
</property> |
|
| 640 |
<name>io.serializations</name> |
|
| 641 |
<value>org.apache.hadoop.io.serializer.WritableSerialization</value> |
|
| 642 |
</property> |
|
| 630 | 643 |
|
| 644 |
<!-- ## Custom config --> |
|
| 645 |
<!--delim character used to seperate fields in hdfs dump files <property> --> |
|
| 631 | 646 |
|
| 632 |
<!-- ## Classes of mapper and reducer --> |
|
| 633 |
<property> |
|
| 634 |
<name>mapreduce.map.class</name> |
|
| 635 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportMapper</value> |
|
| 636 |
</property> |
|
| 647 |
<property> |
|
| 648 |
<name>lod.delim</name> |
|
| 649 |
<value>${lod_delim}</value>
|
|
| 650 |
</property> |
|
| 637 | 651 |
|
| 638 |
<property> |
|
| 639 |
<name>mapreduce.reduce.class</name> |
|
| 652 |
<property> |
|
| 653 |
<name>lod.enclosing</name> |
|
| 654 |
<value>${lod_enclosing}</value>
|
|
| 655 |
</property> |
|
| 640 | 656 |
|
| 641 |
<value>eu.dnetlib.data.mapreduce.hbase.lodImport.LodImportReducer</value> |
|
| 642 |
</property> |
|
| 657 |
<property> |
|
| 658 |
<name>lod.seperator</name> |
|
| 659 |
<value>${lod_seperator}</value>
|
|
| 660 |
</property> |
|
| 643 | 661 |
|
| 644 |
<property> |
|
| 662 |
<property> |
|
| 663 |
<name>lod.lastExecutionDate</name> |
|
| 664 |
<value>${lod_lastExecutionDate}</value>
|
|
| 665 |
</property> |
|
| 645 | 666 |
|
| 646 |
<name>io.serializations</name> |
|
| 647 |
<value>org.apache.hadoop.io.serializer.WritableSerialization</value> |
|
| 648 |
</property> |
|
| 667 |
<property> |
|
| 668 |
<name>lod.conLine</name> |
|
| 669 |
<value>${lod_conLine}</value>
|
|
| 670 |
</property> |
|
| 649 | 671 |
|
| 650 |
<!-- ## Custom config --> |
|
| 651 |
<!--delim character used to seperate fields in hdfs dump files <property> --> |
|
| 672 |
<property> |
|
| 673 |
<name>lod.username</name> |
|
| 674 |
<value>${lod_username}</value>
|
|
| 675 |
</property> |
|
| 652 | 676 |
|
| 653 |
<property>
|
|
| 654 |
<name>lod.delim</name>
|
|
| 655 |
<value>${lod_delim}</value>
|
|
| 656 |
</property>
|
|
| 677 |
<property>
|
|
| 678 |
<name>lod.password</name>
|
|
| 679 |
<value>${lod_password}</value>
|
|
| 680 |
</property>
|
|
| 657 | 681 |
|
| 658 |
<property>
|
|
| 659 |
<name>lod.enclosing</name>
|
|
| 660 |
<value>${lod_enclosing}</value>
|
|
| 661 |
</property>
|
|
| 682 |
<property>
|
|
| 683 |
<name>lod.minCpart</name>
|
|
| 684 |
<value>${lod_minCpart}</value>
|
|
| 685 |
</property>
|
|
| 662 | 686 |
|
| 663 |
<property>
|
|
| 664 |
<name>lod.seperator</name>
|
|
| 665 |
<value>${lod_seperator}</value>
|
|
| 666 |
</property>
|
|
| 687 |
<property>
|
|
| 688 |
<name>lod.maxCpart</name>
|
|
| 689 |
<value>${lod_maxCpart}</value>
|
|
| 690 |
</property>
|
|
| 667 | 691 |
|
| 668 |
<property>
|
|
| 669 |
<name>lod.lastExecutionDate</name>
|
|
| 670 |
<value>${lod_lastExecutionDate}</value>
|
|
| 671 |
</property>
|
|
| 692 |
<property>
|
|
| 693 |
<name>lod.part</name>
|
|
| 694 |
<value>${lod_part}</value>
|
|
| 695 |
</property>
|
|
| 672 | 696 |
|
| 673 |
<property>
|
|
| 674 |
<name>lod.conLine</name>
|
|
| 675 |
<value>${lod_conLine}</value>
|
|
| 676 |
</property>
|
|
| 697 |
<property>
|
|
| 698 |
<name>lod.jsonRels</name>
|
|
| 699 |
<value>${lod_jsonRels}</value>
|
|
| 700 |
</property>
|
|
| 677 | 701 |
|
| 678 |
<property>
|
|
| 679 |
<name>lod.username</name>
|
|
| 680 |
<value>${lod_username}</value>
|
|
| 681 |
</property>
|
|
| 702 |
<property>
|
|
| 703 |
<name>lod.jsonEntities</name>
|
|
| 704 |
<value>${lod_jsonEntities}</value>
|
|
| 705 |
</property>
|
|
| 682 | 706 |
|
| 683 |
<property>
|
|
| 684 |
<name>lod.password</name>
|
|
| 685 |
<value>${lod_password}</value>
|
|
| 686 |
</property>
|
|
| 707 |
<property>
|
|
| 708 |
<name>lod.defaultGraph</name>
|
|
| 709 |
<value>${lod_defaultGraph}</value>
|
|
| 710 |
</property>
|
|
| 687 | 711 |
|
| 688 |
<property> |
|
| 689 |
<name>lod.minCpart</name> |
|
| 690 |
<value>${lod_minCpart}</value>
|
|
| 691 |
</property> |
|
| 692 | 712 |
|
| 693 |
<property>
|
|
| 694 |
<name>lod.maxCpart</name>
|
|
| 695 |
<value>${lod_maxCpart}</value>
|
|
| 696 |
</property>
|
|
| 713 |
<property>
|
|
| 714 |
<name>lod.relationsGraph</name>
|
|
| 715 |
<value>${lod_relationsGraph}</value>
|
|
| 716 |
</property>
|
|
| 697 | 717 |
|
| 698 |
<property>
|
|
| 699 |
<name>lod.part</name>
|
|
| 700 |
<value>${lod_part}</value>
|
|
| 701 |
</property>
|
|
| 718 |
<property>
|
|
| 719 |
<name>lod.baseURI</name>
|
|
| 720 |
<value>${lod_baseURI}</value>
|
|
| 721 |
</property>
|
|
| 702 | 722 |
|
| 703 |
<property>
|
|
| 704 |
<name>lod.jsonRels</name>
|
|
| 705 |
<value>${lod_jsonRels}</value>
|
|
| 706 |
</property>
|
|
| 723 |
<property>
|
|
| 724 |
<name>mapred.reduce.tasks</name>
|
|
| 725 |
<value>${numReducers}</value>
|
|
| 726 |
</property>
|
|
| 707 | 727 |
|
| 708 |
<property>
|
|
| 709 |
<name>lod.jsonEntities</name>
|
|
| 710 |
<value>${lod_jsonEntities}</value>
|
|
| 711 |
</property>
|
|
| 728 |
<property>
|
|
| 729 |
<name>lod.inputFile</name>
|
|
| 730 |
<value>${lod_RelationsInputFile}</value>
|
|
| 731 |
</property>
|
|
| 712 | 732 |
|
| 713 |
<property> |
|
| 714 |
<name>lod.defaultGraph</name> |
|
| 715 |
<value>${lod_defaultGraph}</value>
|
|
| 716 |
</property> |
|
| 717 | 733 |
|
| 734 |
<property> |
|
| 735 |
<name>mapred.output.dir</name> |
|
| 736 |
<value>${lod_output}test</value>
|
|
| 737 |
</property> |
|
| 718 | 738 |
|
| 719 |
<property>
|
|
| 720 |
<name>lod.relationsGraph</name>
|
|
| 721 |
<value>${lod_relationsGraph}</value>
|
|
| 722 |
</property>
|
|
| 739 |
<property>
|
|
| 740 |
<name>lod.entitiesPerQuery</name>
|
|
| 741 |
<value>${lod_entitiesPerQuery}</value>
|
|
| 742 |
</property>
|
|
| 723 | 743 |
|
| 724 |
<property> |
|
| 725 |
<name>lod.baseURI</name> |
|
| 726 |
<value>${lod_baseURI}</value>
|
|
| 727 |
</property> |
|
| 744 |
<property> |
|
| 745 |
<name>lod.relationsPerQuery</name> |
|
| 746 |
<value>${lod_relationsPerQuery}</value>
|
|
| 747 |
</property> |
|
| 748 |
<property> |
|
| 749 |
<name>lod.dataPath</name> |
|
| 750 |
<value>${lod_dataPath}</value>
|
|
| 751 |
</property> |
|
| 728 | 752 |
|
| 729 |
<property> |
|
| 730 |
<name>mapred.reduce.tasks</name> |
|
| 731 |
<value>${numReducers}</value>
|
|
| 732 |
</property> |
|
| 733 | 753 |
|
| 734 |
<property> |
|
| 735 |
<name>lod.inputFile</name> |
|
| 736 |
<value>${lod_RelationsInputFile}</value>
|
|
| 737 |
</property> |
|
| 754 |
</configuration> |
|
| 755 |
</map-reduce> |
|
| 738 | 756 |
|
| 757 |
<ok to="finalize"/> |
|
| 739 | 758 |
|
| 740 |
<property> |
|
| 741 |
<name>mapred.output.dir</name> |
|
| 742 |
<value>${lod_output}test</value>
|
|
| 743 |
</property> |
|
| 759 |
<error to="fail"/> |
|
| 760 |
</action> |
|
| 744 | 761 |
|
| 745 |
<property> |
|
| 746 |
<name>lod.entitiesPerQuery</name> |
|
| 747 |
<value>${lod_entitiesPerQuery}</value>
|
|
| 748 |
</property> |
|
| 749 | 762 |
|
| 750 |
<property> |
|
| 751 |
<name>lod.relationsPerQuery</name> |
|
| 752 |
<value>${lod_relationsPerQuery}</value>
|
|
| 753 |
</property> |
|
| 754 |
<property> |
|
| 755 |
<name>lod.dataPath</name> |
|
| 756 |
<value>${lod_dataPath}</value>
|
|
| 757 |
</property> |
|
| 763 |
<action name='finalize'> |
|
| 764 |
<java> |
|
| 765 |
<prepare> |
|
| 766 |
</prepare> |
|
| 758 | 767 |
|
| 768 |
<configuration> |
|
| 769 |
<property> |
|
| 770 |
<name>mapred.job.queue.name</name> |
|
| 771 |
<value>${queueName}</value>
|
|
| 772 |
</property> |
|
| 773 |
</configuration> |
|
| 759 | 774 |
|
| 760 |
</configuration> |
|
| 761 |
</map-reduce> |
|
| 775 |
<main-class>eu.dnetlib.iis.core.workflows.lodexport.Finalize</main-class> |
|
| 762 | 776 |
|
| 763 |
<ok to="finalize" /> |
|
| 777 |
<arg>${lod_conLine}</arg>
|
|
| 778 |
<arg>${lod_username}</arg>
|
|
| 779 |
<arg>${lod_password}</arg>
|
|
| 780 |
<arg>${lod_minCpart}</arg>
|
|
| 781 |
<arg>${lod_maxCpart}</arg>
|
|
| 782 |
<arg>${lod_part}</arg>
|
|
| 783 |
<arg>${lod_relationsGraph}</arg>
|
|
| 784 |
</java> |
|
| 785 |
<ok to="end"/> |
|
| 764 | 786 |
|
| 765 |
<error to="fail" />
|
|
| 766 |
</action>
|
|
| 787 |
<error to="fail"/>
|
|
| 788 |
</action>
|
|
| 767 | 789 |
|
| 790 |
<action name="cleanUpHDFS"> |
|
| 791 |
<fs> |
|
| 792 |
<delete path="${lod_output}test"/>
|
|
| 793 |
</fs> |
|
| 768 | 794 |
|
| 795 |
<ok to="end"/> |
|
| 796 |
<error to="fail"/> |
|
| 797 |
</action> |
|
| 769 | 798 |
|
| 770 |
<action name='finalize'> |
|
| 771 |
<java> |
|
| 772 |
<prepare> |
|
| 773 |
</prepare> |
|
| 774 | 799 |
|
| 775 |
<configuration> |
|
| 776 |
<property> |
|
| 777 |
<name>mapred.job.queue.name</name> |
|
| 778 |
<value>${queueName}</value>
|
|
| 779 |
</property> |
|
| 780 |
</configuration> |
|
| 781 |
|
|
| 782 |
<main-class>eu.dnetlib.iis.core.workflows.lodexport.Finalize</main-class> |
|
| 783 |
|
|
| 784 |
<!-- <arg>${lod_conLine}</arg> <arg>${lod_username"}</arg> <arg>${lod_password}</arg>
|
|
| 785 |
<arg>${lod_minCpart}</arg> <arg>${lod_maxCpart}</arg> <arg>${lod_part}</arg>
|
|
| 786 |
<arg>${lod_relationsGraph}</arg> -->
|
|
| 787 |
</java> |
|
| 788 |
<ok to="end" /> |
|
| 789 |
|
|
| 790 |
<error to="fail" /> |
|
| 791 |
</action> |
|
| 792 |
|
|
| 793 |
<action name="cleanUpHDFS"> |
|
| 794 |
<fs> |
|
| 795 |
<delete path="${lod_output}test" />
|
|
| 796 |
</fs> |
|
| 797 |
|
|
| 798 |
<ok to="end" /> |
|
| 799 |
<error to="fail" /> |
|
| 800 |
</action> |
|
| 801 |
|
|
| 802 |
|
|
| 803 |
<kill name="fail"> |
|
| 804 |
<message> |
|
| 805 |
Unfortunately, the process failed -- error message: |
|
| 806 |
[${wf:errorMessage(wf:lastErrorNode())}]
|
|
| 807 |
</message> |
|
| 808 |
</kill> |
|
| 809 |
<end name="end" /> |
|
| 800 |
<kill name="fail"> |
|
| 801 |
<message> |
|
| 802 |
Unfortunately, the process failed -- error message: |
|
| 803 |
[${wf:errorMessage(wf:lastErrorNode())}]
|
|
| 804 |
</message> |
|
| 805 |
</kill> |
|
| 806 |
<end name="end"/> |
|
| 810 | 807 |
</workflow-app> |
Also available in: Unified diff
fix for missing arguements in finalize