D-Net

# Root logger option

log4j.rootLogger=INFO, file, stdout

# Direct log messages to a log file

log4j.appender.file=org.apache.log4j.RollingFileAppender

log4j.appender.file.File=/tmp/statsExportLog

log4j.appender.file.MaxFileSize=1MB

log4j.appender.file.MaxBackupIndex=1

log4j.appender.file.layout=org.apache.log4j.PatternLayout

log4j.appender.file.layout.ConversionPattern=%d{yyyy-MM-dd HH:mm:ss} %-5p %c{1}:%L - %m%n

# Direct log messages to stdout

log4j.appender.stdout=org.apache.log4j.ConsoleAppender

log4j.appender.stdout.Target=System.out

log4j.appender.stdout.layout=org.apache.log4j.PatternLayout

log4j.appender.stdout.layout.ConversionPattern=%d{yyyy-MM-dd HH:mm:ss} %-5p %c{1}:%L - %m%n

#log4j.rootLogger = WARN, R

#log4j.logger.gr.uoa = DEBUG

#log4j.logger.org.springframework = DEBUG, S

#log4j.additivity.org.springframework = false

#

#log4j.logger.com.opensymphony.xwork2.ognl.OgnlValueStack = FATAL

#log4j.logger.com.opensymphony.xwork2.ObjectFactory = FATAL

#

#log4j.appender.R=org.apache.log4j.RollingFileAppender

#log4j.appender.R.File=/tmp/log/validator.log

#log4j.appender.R.MaxFileSize=10MB

#log4j.appender.R.MaxBackupIndex=10

#log4j.appender.R.layout=org.apache.log4j.PatternLayout

#log4j.appender.R.layout.ConversionPattern= %d %p %t [%c] - %m%n

#

#log4j.appender.S=org.apache.log4j.RollingFileAppender

#log4j.appender.S.File=/tmp/log/spring-validator.log

#log4j.appender.S.MaxFileSize=10MB

#log4j.appender.S.MaxBackupIndex=10

#log4j.appender.S.layout=org.apache.log4j.PatternLayout

#log4j.appender.S.layout.ConversionPattern= %d %p %t [%c] - %m%n

#Generated by Maven

#Wed May 25 23:28:59 EEST 2016

version=1.0.0-SNAPSHOT

groupId=eu.dnetlib

artifactId=dnet-openaire-lod-interlinking

C:\Users\eri_k\workspace\lodinterlinking\trunk\src\main\java\eu\dnetlib\data\mapreduce\hbase\lodExport\utils\TargetParser.java

C:\Users\eri_k\workspace\lodinterlinking\trunk\src\main\java\eu\dnetlib\data\mapreduce\hbase\lodExport\utils\SourceParser.java

C:\Users\eri_k\workspace\lodinterlinking\trunk\src\main\java\eu\dnetlib\data\mapreduce\hbase\lodExport\TargetMapper.java

C:\Users\eri_k\workspace\lodinterlinking\trunk\src\main\java\eu\dnetlib\data\mapreduce\hbase\lodExport\DatasetReducer.java

C:\Users\eri_k\workspace\lodinterlinking\trunk\src\main\java\eu\dnetlib\data\mapreduce\hbase\lodExport\SourceMapper.java

eu\dnetlib\data\mapreduce\hbase\lodExport\utils\SourceParser.class

eu\dnetlib\data\mapreduce\hbase\lodExport\SourceMapper$ENTITIES_COUNTER.class

eu\dnetlib\data\mapreduce\hbase\lodExport\utils\TargetParser.class

eu\dnetlib\data\mapreduce\hbase\lodExport\TargetMapper$ENTITIES_COUNTER.class

eu\dnetlib\data\mapreduce\hbase\lodExport\SourceMapper.class

eu\dnetlib\data\mapreduce\hbase\lodExport\TargetMapper.class

eu\dnetlib\data\mapreduce\hbase\lodExport\DatasetReducer.class

package eu.dnetlib.data.mapreduce.hbase.lodExport;

import eu.dnetlib.data.mapreduce.hbase.lodExport.utils.SourceParser;

import eu.dnetlib.data.mapreduce.hbase.lodExport.utils.TargetParser;

import org.apache.hadoop.io.LongWritable;

import org.apache.hadoop.io.Text;

import org.apache.hadoop.mapreduce.Mapper;

import org.apache.log4j.Logger;

import java.io.IOException;

/**

 * Mapper Class that reads HBASE contents and prepares them for the StatsDB

 * export

 */

public class TargetMapper extends Mapper<LongWritable, Text, Text, Text> {

    private Logger log = Logger.getLogger(this.getClass());

    private TargetParser parser;

    public static enum ENTITIES_COUNTER {

        RESULT,

        PROJECT,

        DATASOURCE,

        PERSON,

        ORGANIZATION,

        TARGET_ENTITIES,

    }

    @Override

    protected void setup(Context context) throws IOException, InterruptedException {

//        lastExecutionDate = context.getConfiguration().get("lod.lastExecutionDate");

    }

    @Override

    protected void map(final LongWritable keyIn, final Text result, final Context context) throws IOException {

        try {

            //parse record accordingly

            String processedRecord = parser.parse(result.toString());

            //if record is valid according to our constaints

            if (processedRecord != null) {

                //here add id

                Text TextKeyOut = new Text("sourceId");

                context.write((TextKeyOut), new Text(processedRecord));

                context.getCounter(ENTITIES_COUNTER.TARGET_ENTITIES).increment(1);

            }

        } catch (Exception e) {

            log.error("Error writing entity to M/R output", e);

        }

    }

    @Override

    protected void cleanup(Context context) throws IOException, InterruptedException {

        super.cleanup(context);

    }

}

package eu.dnetlib.data.mapreduce.hbase.lodExport;

import org.apache.hadoop.io.Text;

import org.apache.hadoop.mapreduce.Reducer;

import org.apache.log4j.Logger;

import java.io.IOException;

import java.nio.charset.Charset;

import java.util.Iterator;

public class DatasetReducer extends Reducer<Text, Text, Text, Text> {

    private Logger log = Logger.getLogger(DatasetReducer.class);

    @Override

    protected void setup(Context context) throws IOException, InterruptedException {

    }

    ;

    @Override

    protected void reduce(final Text key, final Iterable<Text> values, final Context context) throws IOException, InterruptedException {

        Iterator<Text> it = values.iterator();

        while (it.hasNext()) {

            String value = new String(it.next().copyBytes(), Charset.forName("UTF-8"));

            context.write(key, new Text(value));

        }

    }

    @Override

    protected void cleanup(Context context) throws IOException, InterruptedException {

        log.info("Cleaning up reducer...");

        //MultipleOutputWriter.close();

    }

}

package eu.dnetlib.data.mapreduce.hbase.lodExport.utils;

/**

 * Created by eri_k on 5/25/2016.

 */

public class SourceParser {

    public static String parse(String record) {

        String[] Fields = record.split(",");

        // filter output records based on attibute

        if (isValid("")) {

            return "s_" + record;

        } else {

            return null;

        }

    }

    //add checks here - which records should we outuput to the map output?

    private static boolean isValid(String attribute) {

        return true;

    }

}

package eu.dnetlib.data.mapreduce.hbase.lodExport.utils;

/**

 * Created by eri_k on 5/25/2016.

 */

public class TargetParser {

    public static String parse(String record) {

        String[] Fields = record.split(",");

        // filter output records based on attibute

        if (isValid("")) {

            return "s_" + record;

        } else {

            return null;

        }

    }

    //add checks here - which records should we outuput to the map output?

    private static boolean isValid(String attribute) {

        return true;

    }

}

package eu.dnetlib.data.mapreduce.hbase.lodExport;

import eu.dnetlib.data.mapreduce.hbase.lodExport.utils.SourceParser;

import org.apache.hadoop.io.LongWritable;

import org.apache.hadoop.io.Text;

import org.apache.hadoop.mapreduce.Mapper;

import org.apache.log4j.Logger;

import java.io.IOException;

/**

 * Mapper Class that reads HBASE contents and prepares them for the StatsDB

 * export

 */

public class SourceMapper extends Mapper<LongWritable, Text, Text, Text> {

    private Logger log = Logger.getLogger(this.getClass());

    private SourceParser parser;

    public static enum ENTITIES_COUNTER {

        RESULT,

        PROJECT,

        DATASOURCE,

        PERSON,

        ORGANIZATION,

        SOURCE_ENTITIES,

    }

    @Override

    protected void setup(Context context) throws IOException, InterruptedException {

//        lastExecutionDate = context.getConfiguration().get("lod.lastExecutionDate");

    }

    @Override

    protected void map(final LongWritable keyIn, final Text result, final Context context) throws IOException {

        try {

            //parse record accordingly

            String processedRecord = parser.parse(result.toString());

            //if record is valid according to our constaints

            if (processedRecord != null) {

                //here add id

                Text TextKeyOut = new Text("sourceId");

                context.write((TextKeyOut), new Text(processedRecord));

                context.getCounter(ENTITIES_COUNTER.SOURCE_ENTITIES).increment(1);

            }

        } catch (Exception e) {

            log.error("Error writing entity to M/R output", e);

        }

    }

    @Override

    protected void cleanup(Context context) throws IOException, InterruptedException {

        super.cleanup(context);

    }

}

# Root logger option

log4j.rootLogger=INFO, file, stdout

# Direct log messages to a log file

log4j.appender.file=org.apache.log4j.RollingFileAppender

log4j.appender.file.File=/tmp/statsExportLog

log4j.appender.file.MaxFileSize=1MB

log4j.appender.file.MaxBackupIndex=1

log4j.appender.file.layout=org.apache.log4j.PatternLayout

log4j.appender.file.layout.ConversionPattern=%d{yyyy-MM-dd HH:mm:ss} %-5p %c{1}:%L - %m%n

# Direct log messages to stdout

log4j.appender.stdout=org.apache.log4j.ConsoleAppender

log4j.appender.stdout.Target=System.out

log4j.appender.stdout.layout=org.apache.log4j.PatternLayout

log4j.appender.stdout.layout.ConversionPattern=%d{yyyy-MM-dd HH:mm:ss} %-5p %c{1}:%L - %m%n

#log4j.rootLogger = WARN, R

#log4j.logger.gr.uoa = DEBUG

#log4j.logger.org.springframework = DEBUG, S

#log4j.additivity.org.springframework = false

#

#log4j.logger.com.opensymphony.xwork2.ognl.OgnlValueStack = FATAL

#log4j.logger.com.opensymphony.xwork2.ObjectFactory = FATAL

#

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#log4j.appender.R.File=/tmp/log/validator.log

#log4j.appender.R.MaxFileSize=10MB

#log4j.appender.R.MaxBackupIndex=10

#log4j.appender.R.layout=org.apache.log4j.PatternLayout

#log4j.appender.R.layout.ConversionPattern= %d %p %t [%c] - %m%n

#

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#log4j.appender.S.MaxFileSize=10MB

#log4j.appender.S.MaxBackupIndex=10

#log4j.appender.S.layout=org.apache.log4j.PatternLayout

#log4j.appender.S.layout.ConversionPattern= %d %p %t [%c] - %m%n

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         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">

    <parent>

        <groupId>eu.dnetlib</groupId>

        <artifactId>dnet-hadoop-parent</artifactId>

        <version>1.0.0</version>

        <relativePath></relativePath>

    </parent>

    <modelVersion>4.0.0</modelVersion>

    <groupId>eu.dnetlib</groupId>

    <artifactId>dnet-openaire-lod-interlinking</artifactId>

    <version>1.0.0-SNAPSHOT</version>

    <build>

        <plugins>

            <plugin>

                <groupId>org.apache.maven.plugins</groupId>

                <artifactId>maven-compiler-plugin</artifactId>

                <configuration>

                    <source>1.7</source>

                    <target>1.7</target>

                </configuration>

            </plugin>

        </plugins>

    </build>

    <dependencies>

        <dependency>

            <groupId>javax.xml</groupId>

            <artifactId>jaxp-api</artifactId>

            <version>1.4.2</version>

        </dependency>

        <dependency>

            <groupId>org.apache.poi</groupId>

            <artifactId>poi</artifactId>

            <version>3.8</version>

        </dependency>

        <dependency>

            <groupId>org.apache.logging.log4j</groupId>

            <artifactId>log4j-core</artifactId>

            <version>2.0-rc2</version>

        </dependency>

        <dependency>

            <groupId>log4j</groupId>

            <artifactId>log4j</artifactId>

            <version>1.2.17</version>

        </dependency>

        <dependency>

            <groupId>org.slf4j</groupId>

            <artifactId>slf4j-api</artifactId>

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        <dependency>

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            <artifactId>slf4j-log4j12</artifactId>

            <version>1.7.6</version>

        </dependency>

      <dependency>

			<groupId>com.google.guava</groupId>

			<artifactId>guava</artifactId>

			<version>15.0</version>

		</dependency>

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        </dependency>

        <dependency>

            <groupId>commons-httpclient</groupId>

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        </dependency>

        <dependency>

            <groupId>junit</groupId>

            <artifactId>junit</artifactId>

            <version>4.8.2</version>

        </dependency>

        <dependency>

            <groupId>eu.dnetlib</groupId>

            <artifactId>cnr-rmi-api</artifactId>

            <version>LATEST</version>

        </dependency>

        <dependency>

            <groupId>org.apache.cxf</groupId>

            <artifactId>cxf-rt-frontend-jaxws</artifactId>

            <version>2.7.8</version>

        </dependency>

        <dependency>

            <groupId>org.apache.hadoop</groupId>

            <artifactId>hadoop-common</artifactId>

            <version>2.6.0-cdh5.4.7</version>

        </dependency>

        <dependency>

            <groupId>org.apache.hadoop</groupId>

            <artifactId>hadoop-mapreduce-client-core</artifactId>

            <version>2.6.0-cdh5.4.3</version>

        </dependency>

    </dependencies>

    <repositories>

        <repository>

            <id>cloudera</id>

            <name>Cloudera Repository</name>

            <url>https://repository.cloudera.com/artifactory/cloudera-repos</url>

            <releases>

                <enabled>true</enabled>

            </releases>

            <snapshots>

                <enabled>false</enabled>

            </snapshots>

        </repository>

    </repositories>

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