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package eu.dnetlib.data.mapreduce.hbase.dedup;
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import java.io.IOException;
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import java.util.Map;
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import java.util.Map.Entry;
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import org.apache.commons.collections.MapUtils;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.hadoop.hbase.client.Put;
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import org.apache.hadoop.hbase.client.Result;
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import org.apache.hadoop.hbase.io.ImmutableBytesWritable;
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import org.apache.hadoop.hbase.mapreduce.TableMapper;
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import org.apache.hadoop.hbase.util.Bytes;
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import eu.dnetlib.actionmanager.actions.ActionFactory;
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import eu.dnetlib.actionmanager.actions.AtomicAction;
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import eu.dnetlib.actionmanager.common.Agent;
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import eu.dnetlib.data.mapreduce.JobParams;
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import eu.dnetlib.pace.config.DedupConfig;
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public class DedupSimilarityToActionsMapper extends TableMapper<ImmutableBytesWritable, Put> {
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private static final Log log = LogFactory.getLog(DedupSimilarityToActionsMapper.class); // NOPMD by marko on 11/24/08 5:02 PM
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private static final String RAW_SET = "rawSetId";
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private static final String SIMILARITY_CF = "similarityCF";
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private String rawSet = null;
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private String similarityCF = null;
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private DedupConfig dedupConf = null;
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private ActionFactory actionFactory = null;
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@Override
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protected void setup(final Context context) throws IOException, InterruptedException {
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rawSet = context.getConfiguration().get(RAW_SET);
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if (StringUtils.isBlank(rawSet)) throw new IOException("Input parameter (" + RAW_SET + ") is missing or empty: '" + rawSet + "'");
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log.info("raw set: '" + rawSet + "'");
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similarityCF = context.getConfiguration().get(SIMILARITY_CF);
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if (StringUtils.isBlank(similarityCF)) throw new IOException("Input parameter (" + SIMILARITY_CF + ") is missing or empty: '" + similarityCF + "'");
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log.info("similarityCF: '" + similarityCF + "'");
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dedupConf = DedupConfig.load(context.getConfiguration().get(JobParams.DEDUP_CONF));
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log.info("wf conf: " + dedupConf.toString());
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actionFactory = new ActionFactory();
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}
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@Override
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protected void map(final ImmutableBytesWritable key, final Result value, final Context context) throws IOException, InterruptedException {
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final Map<byte[], byte[]> sMap = value.getFamilyMap(Bytes.toBytes(similarityCF));
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if (MapUtils.isEmpty(sMap)) return;
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final Agent agent = new Agent("dedup", "Deduplication", Agent.AGENT_TYPE.algo);
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for (final Entry<byte[], byte[]> similarity : sMap.entrySet()) {
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final String targetKey = new String(key.copyBytes());
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final String qualifier = new String(similarity.getKey());
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final AtomicAction aa = actionFactory.createAtomicAction(rawSet, agent, targetKey, similarityCF, qualifier, null);
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for (final Put put : aa.asPutOperations(null, null, null, null)) {
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context.write(new ImmutableBytesWritable(Bytes.toBytes(aa.getRowKey())), put);
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context.getCounter(dedupConf.getWf().getEntityType(), "similarity2actions").increment(1);
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}
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}
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}
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}
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align with latest dnet-actionmanager-common