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package eu.dnetlib.data.transform.xml;
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import java.lang.reflect.Type;
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import java.util.List;
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import com.google.gson.Gson;
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import com.google.gson.reflect.TypeToken;
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import org.apache.commons.lang.StringUtils;
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/**
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* * <xsl:stylesheet ... xmlns:openTrials="eu.dnetlib.miscutils.functional.xml.OpenTrialsFunctions"> ... </xsl:stylesheet>
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* Created by alessia on 13/05/16.
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*/
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public class OpenTrialsXsltFunctions {
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/**
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* Parses a json to get the first url item.
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*
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* @param jsonProvList A json string in the following format: [{"url" : "theUrl", "sourceID" : "theSourceId", "sourceName" : "theSourceName"}]
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* @return the url value in the first object in the list
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*/
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@Deprecated
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public static String getMainIdentifierURL(String jsonProvList) {
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List<JsonProv> provs = getProvs(jsonProvList);
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for (JsonProv prov : provs) {
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if (StringUtils.isNotBlank(prov.getUrl())) return prov.getUrl();
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}
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return "";
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}
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/**
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* Parses a Json to get the url item associated to the primary record if any
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* @param jsonRecordsList A json string in the format [{"source_id","theSourceId","source_url","theUrlOfTheTrialForThisSource", "is_primary","typeOfTheTrial")}]
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* @return the url value of the primary record
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*/
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public static String getPrimaryRecordUrl(String jsonRecordsList){
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List<JsonRecord> records = getRecords(jsonRecordsList);
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for (JsonRecord record : records) {
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if(record.isIs_primary() && StringUtils.isNotBlank(record.getSource_url()))
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return record.getSource_url();
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}
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if (!records.isEmpty() && StringUtils.isNotBlank(records.get(0).getSource_url())){
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return records.get(0).getSource_url();
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}
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return "";
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}
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/**
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* Parses a Json to get the id of the source associated to the primary record if any
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* @param jsonRecordsList A json string in the format [{"source_id","theSourceId","source_url","theUrlOfTheTrialForThisSource", "is_primary","typeOfTheTrial")}]
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* @return the id of the source of the primary record
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*/
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public static String getPrimaryRecordIdentifier(String jsonRecordsList){
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List<JsonRecord> records = getRecords(jsonRecordsList);
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for (JsonRecord record : records) {
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if(record.isIs_primary() && StringUtils.isNotBlank(record.getSource_id()))
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return record.getSource_id();
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}
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if (!records.isEmpty() && StringUtils.isNotBlank(records.get(0).getSource_url())){
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return records.get(0).getSource_id();
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}
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return "";
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}
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/**
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* Parses a Json to get the list of the not primary url associated to the trial if any
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* @param jsonRecordsList A json string in the format [{"source_id","theSourceId","source_url","theUrlOfTheTrialForThisSource", "is_primary","typeOfTheTrial")}]
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* @return a string containing the not primary source urls divided by "@@"
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*/
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public static String getNotPrimaryRecordUrl(String jsonRecordsList){
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boolean found = false;
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String ret = "";
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List<JsonRecord> records = getRecords(jsonRecordsList);
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for (JsonRecord record : records) {
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if(record.isIs_primary())
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found = true;
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else
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if(StringUtils.isNotBlank(record.getSource_url()))
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ret += record.getSource_url() + "@@";
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}
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if (!found && ret.length() > 0){
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ret = ret.substring(ret.indexOf("@@")+2);
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}
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if(ret.endsWith("@@"))
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ret = ret.substring(0,ret.length()-2);
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return ret;
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}
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/**
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* Parses a Json to get the names of the principal investigators of the trial if any
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* @param jsonPeopleList A json string in the format [{"person_name", "thePersonName", "person_id","thePersonId", "person_role",thePersonRole)}]
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* @return a string containing the names of the principal investigators divided by @@
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*/
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public static String getPrincipalInvestigators(String jsonPeopleList){
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List<JsonPeople> people = getPeople(jsonPeopleList);
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String ret ="";
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for (JsonPeople person : people) {
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if(StringUtils.isNotBlank(person.getPerson_role()) && (person.getPerson_role().equals("principal_investigator"))){
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ret += conformToGuidelines(person.getPerson_name()) + "@@";
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}
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}
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if(ret.endsWith("@@")){
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ret=ret.substring(0,ret.length()-2);
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}
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return ret;
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}
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private static String conformToGuidelines(String person_name) {
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if (person_name.indexOf(",") > -1)
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person_name = person_name.substring(0,person_name.indexOf(","));
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String[] name = person_name.split(" ");
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person_name = name[name.length-1] + ",";
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for(int i=0;i<name.length-1; i++)
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person_name += " " + name[i];
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return person_name;
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}
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/**
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* Parses a Json to get the names of the organizations supporting the trial if any
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* @param jsonOrganizationList A json string in the format [{"organization_name", "theOrganizationName", "organization_id","theOrganizationId", "organization_role",theOrganizationRole)}]
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* @return a string containing the names and roles of the organizations
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*/
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public static String getTrialOrganizations(String jsonOrganizationList){
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List<JsonOrganization> organizations = getOrganizations(jsonOrganizationList);
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String ret ="";
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for (JsonOrganization o : organizations) {
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if (StringUtils.isNotBlank(o.getOrganization_id())) {
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ret += o.getOrganization_name() + "@";
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if (o.getOrganization_role().equalsIgnoreCase("primary_sponsor"))
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ret += "sponsor@@";
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else
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ret += o.getOrganization_role() + "@@";
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}
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}
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if(ret.endsWith("@@")){
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ret=ret.substring(0,ret.length()-2);
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}
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return ret;
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}
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/**
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* Parses a Json to get the names of the locations where the trial take place if any
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* @param jsonLocationsList A json string in the format [{"location_name","theLocationName"}]
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* @return a string containing the locations associated to the trial divided by "@@"
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*/
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public static String getTrialLocations(String jsonLocationsList){
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List<JsonLocation> locations = getLocations(jsonLocationsList);
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String ret ="";
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for (JsonLocation l : locations) {
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if (StringUtils.isNotBlank(l.getLocation_name()))
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ret += l.getLocation_name() + "@@";
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}
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if(ret.endsWith("@@")){
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ret=ret.substring(0,ret.length()-2);
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}
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return ret;
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}
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@Deprecated
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public static List<JsonProv> getProvs(String jsonProvList) {
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Gson gson = new Gson();
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Type type = new TypeToken<List<JsonProv>>() {
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}.getType();
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return gson.fromJson(jsonProvList, type);
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}
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public static List<JsonRecord> getRecords(String jsonRecordsList) {
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Gson gson = new Gson();
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Type type = new TypeToken<List<JsonRecord>>() {
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}.getType();
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return gson.fromJson(jsonRecordsList, type);
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}
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public static List<JsonPeople> getPeople(String jsonPeopleList) {
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Gson gson = new Gson();
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Type type = new TypeToken<List<JsonPeople>>() {
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}.getType();
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return gson.fromJson(jsonPeopleList, type);
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}
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public static List<JsonOrganization> getOrganizations(String jsonOrganizationsList) {
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Gson gson = new Gson();
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Type type = new TypeToken<List<JsonOrganization>>() {
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}.getType();
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return gson.fromJson(jsonOrganizationsList, type);
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}
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public static List<JsonLocation> getLocations(String jsonLocationsList) {
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Gson gson = new Gson();
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Type type = new TypeToken<List<JsonLocation>>() {
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}.getType();
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return gson.fromJson(jsonLocationsList, type);
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}
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@Deprecated
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static class JsonProv {
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String url, sourceId, sourceName;
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public String getUrl() {
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return url;
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}
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public void setUrl(final String url) {
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this.url = url;
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}
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public String getSourceId() {
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return sourceId;
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}
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public void setSourceId(final String sourceId) {
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this.sourceId = sourceId;
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}
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public String getSourceName() {
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return sourceName;
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}
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public void setSourceName(final String sourceName) {
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this.sourceName = sourceName;
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}
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}
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static class JsonRecord{
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String source_id, source_url;
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boolean is_primary;
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public String getSource_id() {
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return source_id;
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}
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public String getSource_url() {
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return source_url;
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}
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public void setSource_id(String source_id) {
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this.source_id = source_id;
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}
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public void setSource_url(String source_url) {
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this.source_url = source_url;
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}
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public boolean isIs_primary() {
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return is_primary;
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}
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public void setIs_primary(final boolean is_primary) {
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this.is_primary = is_primary;
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}
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}
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static class JsonPeople{
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String person_name, person_id, person_role;
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public String getPerson_name() {
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return person_name;
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}
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public void setPerson_name(String person_name) {
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this.person_name = person_name;
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}
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public String getPerson_id() {
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return person_id;
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}
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public void setPerson_id(String person_id) {
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this.person_id = person_id;
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}
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public String getPerson_role() {
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return person_role;
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}
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public void setPerson_role(String person_role) {
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this.person_role = person_role;
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}
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}
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static class JsonOrganization{
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String organization_name, organization_id, organization_role;
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public String getOrganization_name() {
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return organization_name;
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}
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public void setOrganization_name(String organization_name) {
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this.organization_name = organization_name;
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}
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public String getOrganization_id() {
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return organization_id;
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}
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public void setOrganization_id(String organization_id) {
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this.organization_id = organization_id;
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}
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public String getOrganization_role() {
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return organization_role;
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}
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public void setOrganization_role(String organization_role) {
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this.organization_role = organization_role;
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}
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}
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static class JsonLocation{
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String location_name;
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public String getLocation_name() {
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return location_name;
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}
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public void setLocation_name(String location_name) {
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this.location_name = location_name;
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}
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}
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}
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