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42922
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eri.katsar
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package eu.dnetlib.data.mapreduce.hbase.lodExport.build;
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eri.katsar
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45843
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eri.katsar
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import eu.dnetlib.data.mapreduce.hbase.lodExport.utils.configuration.LodConfiguration;
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import eu.dnetlib.data.mapreduce.hbase.lodExport.utils.caching.RedisUtils;
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import eu.dnetlib.data.mapreduce.hbase.lodExport.utils.blocking.Blocking;
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43143
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giorgos.al
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import org.apache.hadoop.io.LongWritable;
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import org.apache.hadoop.io.Text;
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import org.apache.hadoop.mapreduce.Mapper;
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import org.apache.log4j.Logger;
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eri.katsar
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43365
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eri.katsar
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import java.io.IOException;
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45050
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eri.katsar
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import java.util.HashMap;
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45054
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eri.katsar
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import java.util.List;
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43365
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eri.katsar
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import java.util.Map;
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43347
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eri.katsar
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43670
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eri.katsar
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/*-> Parse LOD dump files
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eri.katsar
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Process lod input files and divide by entity type (both source and target)
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Transform to id, array of [ properties] format
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Store to HDFS
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For -> Multiple outputs and inputs
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Multiple inputs: all source and target datasets and their corresponding mappings
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M/O: separate output files for each dataset: mark records so that they are written to the correct one
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*/
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45713
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eri.katsar
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public class TargetBuildNoCacheMapper extends Mapper<LongWritable, Text, Text, Text> {
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eri.katsar
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private Logger log = Logger.getLogger(this.getClass());
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eri.katsar
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private LodConfiguration lodConfiguration;
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45050
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eri.katsar
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private String stopWords;
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private Map<String, Integer> stopWordsMap = new HashMap<>();
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eri.katsar
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private static final String LINE_DELIM = "\t.\t";
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private static final String FIELD_DELIM = "\t";
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45050
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eri.katsar
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43485
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eri.katsar
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public static enum TARGET_BUILD_COUNTERS {
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eri.katsar
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BLOCKING_KEYS,
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48225
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eri.katsar
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INPUT_TARGET_RECORDS
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42692
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eri.katsar
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}
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@Override
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protected void setup(Context context) throws IOException, InterruptedException {
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try {
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lodConfiguration = new LodConfiguration();
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lodConfiguration.load(context.getConfiguration().get("lod.targetMappings"));
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stopWords = context.getConfiguration().get("lod.stopwords");
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for (String stopword : stopWords.split(",")) {
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stopWordsMap.put(stopword, 0);
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}
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} catch (Exception ex) {
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log.error("An error occured during Mapper Setup " + ex.toString(), ex);
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eri.katsar
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}
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42692
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}
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@Override
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protected void map(final LongWritable keyIn, final Text result, final Context context) throws IOException {
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try {
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43342
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eri.katsar
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//get ID
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43950
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eri.katsar
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StringBuilder id = new StringBuilder();
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eri.katsar
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String[] triples = result.toString().split(LINE_DELIM);
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context.getCounter(TARGET_BUILD_COUNTERS.INPUT_TARGET_RECORDS).increment(1);
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45625
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eri.katsar
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for (String triple : triples) {
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String[] fields = triple.split(FIELD_DELIM);
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45626
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eri.katsar
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if (fields.length == 3) {
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if (id.length() < 1) {
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id.append("target_").append(fields[0]);
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}
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48226
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eri.katsar
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String property = fields[1];
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eri.katsar
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String value = fields[2];
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48226
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eri.katsar
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if (!property.contains("name") && !property.contains("label")) {
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List<String> blockingKeys = Blocking.tokenBlocking(value, stopWordsMap);
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//Write BlockingKey, RecordID to output
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for (String blockingKey : blockingKeys) {
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context.write(new Text(blockingKey), new Text(id + FIELD_DELIM + result.toString()));
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context.getCounter(TARGET_BUILD_COUNTERS.BLOCKING_KEYS).increment(1);
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}
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eri.katsar
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}
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}
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}
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} catch (Exception e) {
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log.error("Error writing entity to M/R output", e);
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log.error("result error " + result.toString());
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throw new RuntimeException(e);
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}
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}
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@Override
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protected void cleanup(Context context) throws IOException, InterruptedException {
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super.cleanup(context);
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log.info("Cleaning up mapper...");
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}
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43347
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eri.katsar
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public Logger getLog() {
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return log;
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}
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public void setLog(Logger log) {
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this.log = log;
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}
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public LodConfiguration getLodConfiguration() {
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return lodConfiguration;
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}
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public void setLodConfiguration(LodConfiguration lodConfiguration) {
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this.lodConfiguration = lodConfiguration;
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}
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42692
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eri.katsar
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}
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