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<?php
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defined('_JEXEC') or die('Access denied');
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jimport('joomla.application.component.model');
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jimport('joomla.http.http');
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jimport('joomla.log.log');
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$GLOBALS['THRIFT_ROOT'] = dirname(__FILE__) . DS . 'thrift';
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require_once($GLOBALS['THRIFT_ROOT'] . DS . 'Thrift.php');
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require_once($GLOBALS['THRIFT_ROOT'] . DS . 'protocol' . DS . 'TBinaryProtocol.php');
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require_once($GLOBALS['THRIFT_ROOT'] . DS . 'transport' . DS . 'TSocket.php');
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require_once($GLOBALS['THRIFT_ROOT'] . DS . 'transport' . DS . 'TBufferedTransport.php');
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require_once($GLOBALS['THRIFT_ROOT'] . DS . 'packages' . DS . 'OpenAIREConnector' . DS . 'OpenAIREConnector.php');
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// This model manages claims.
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class OpenAireModelClaim extends JModelItem {
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const SELECTED_PROJECTS = 'selectedProjects';
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const SELECTED_CONCEPTS = 'selectedConcepts';
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const SELECTED_PUBLICATIONS = 'selectedPublications';
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const SEARCH_DOI_CACHE_ID = 'search.doi';
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const SEARCH_DATASET_CACHE_ID = 'search.datacite';
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const SEARCH_ORCID_CACHE_ID = 'search.orcid';
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const CLAIMED_PUBLICATIONS_CACHE_ID = 'claimed.publications';
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const CACHE_GROUP = 'openaire.claim';
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const CROSSREF_URL = 'http://www.crossref.org/openurl?noredirect=true&pid=antleb%40di.uoa.gr&format=unixref&id=';
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const CROSSREF_API_DOI = 'http://api.crossref.org/works/';
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const CROSSREF_API_KEYWORD = 'http://api.crossref.org/works?query=';
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const DOI_SCHEME = 'doi:';
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const DATACITE_URL = 'http://data.datacite.org/application/rdf+xml/';
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const DATACITE_URL_KEYWORD = 'http://search.datacite.org/api?q=';
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const DATACITE_URL_KEYWORD_REST = '&fl=doi,title,creator,publisher,created&wt=xml';
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const DOI_URL = 'http://dx.doi.org/';
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const ORCID_URL_PREFIX = 'http://pub.orcid.org/';
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const ORCID_URL_PUBLICATIONS_SUFFIX = '/orcid-works';
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const ORCID_URL_AUTHOR_SUFFIX = '/orcid-bio';
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const HTTP_OK = 200;
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const HTTP_NOT_FOUND = 404;
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const DOI = 'doi';
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const ORCID = 'orcid';
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const DATACITE = 'datacite';
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const RELATION = 'rels2actions';
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const DMF = 'dmf2actions';
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const UPDATES2ACTIONS = 'updates2actions';
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const UNDETERMINED = 'Undetermined';
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const LOG = 'openaire';
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//claim modes
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const CLAIM = 'claim';
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const CLAIMINLINE = 'claiminline';
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const CLAIMINLINE2 = 'claiminline2';
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private $cache;
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private $http;
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private $transport;
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private $client;
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// Construct a new OpenAireModelClaim.
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// $configuration the configuration to use
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public function __construct($configuration) {
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parent :: __construct($configuration);
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$this -> cache = JCache :: getInstance();
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$this -> http = new JHttp();
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$parameters = JComponentHelper :: getParams('com_openaire');
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$socket = new TSocket($parameters -> get('thriftHost'), intval($parameters -> get('thriftPort')));
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$socket -> setRecvTimeout(intval($parameters -> get('thriftTimeout')));
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$this -> transport = new TBufferedTransport($socket);
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$this -> client = new OpenAIREConnectorClient(new TBinaryProtocol($this -> transport));
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$this -> transport -> open();
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}
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// Close Thrift transport
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public function __destruct() {
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$this -> transport -> close();
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}
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// Get the selected projects stored in session.
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// return the selected projects (array) or NULL if any errors occur
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public function getSelectedProjects($suffix = self :: CLAIM) {
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try {
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$projects = unserialize(JFactory :: getSession() -> get(self :: SELECTED_PROJECTS . $suffix, serialize(array())));
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JLog :: add('Retrieved ' . count($projects) . ' selected projects', JLog :: INFO, self :: LOG);
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return $projects;
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} catch (Exception $e) {
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JLog :: add('Error retrieving selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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return NULL;
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}
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}
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// Add a project to the selected projects stored in session.
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// $project the project to add
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public function addSelectedProject($project, $suffix = self :: CLAIM) {
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try {
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$session = JFactory :: getSession();
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$projects = unserialize($session -> get(self :: SELECTED_PROJECTS . $suffix, serialize(array())));
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$projects[$project -> id] = $project;
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$session -> set(self :: SELECTED_PROJECTS . $suffix, serialize($projects));
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JLog :: add('Added project ' . $project -> id . ' to selected projects', JLog :: INFO, self :: LOG);
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} catch (Exception $e) {
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JLog :: add('Error adding project ' . $project -> id . ' to selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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}
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}
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// Remove a project from the selected projects stored in session.
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// $projectId the identifier of the project to remove
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public function removeSelectedProject($projectId, $suffix = self :: CLAIM) {
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try {
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$session = JFactory :: getSession();
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$projects = unserialize($session -> get(self :: SELECTED_PROJECTS . $suffix, serialize(array())));
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unset($projects[$projectId]);
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$session -> set(self :: SELECTED_PROJECTS . $suffix, serialize($projects));
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JLog :: add('Removed project ' . $projectId . ' from selected projects', JLog :: INFO, self :: LOG);
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} catch (Exception $e) {
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JLog :: add('Error removing project ' . $projectId . ' from selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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}
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}
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//empties selected concepts
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public function emptySelectedProjects($suffix = self :: CLAIM) {
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try {
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$session = JFactory :: getSession();
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$session -> set(self :: SELECTED_PROJECTS . $suffix, serialize(array()));
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} catch (Exception $e) {
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;
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}
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}
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//empties selected publications
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public function emptySelectedPublications($suffix = self :: CLAIM) {
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try {
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$session = JFactory :: getSession();
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$session -> set(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array()));
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} catch (Exception $e) {
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;
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}
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}
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//Get concept using id
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//returns concept object or error
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public function getConcept($conceptId, $withChildren = false){
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$contexts = $this->getContexts();
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$concept = new JObject();
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$concept->context = new JObject();
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$concept->category = new JObject();
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$concept->concepts = array();
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$concept->id = $conceptId;
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$data = explode("::", $conceptId);
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if (count($data) > 1){
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list ($context, $category) = $data;
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$category = $context . "::" . $category;
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}
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else{
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$context = $data[0];
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$category = null;
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}
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if (!isset($contexts[$context]))
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return NULL;
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$concept->context->id = $context;
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$concept->context->name = $contexts[$context]->name;
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if ($category == null){
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$concept->category = null;
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$concept->path = $this->getConceptPath($concept);
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return $concept;
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}
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if (!isset($contexts[$context]->categories[$category]))
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return NULL;
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$concept->category->id = $category;
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$concept->category->name = $contexts[$context]->categories[$category]->name;
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$concepts = $contexts[$context]->categories[$category]->concepts;
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$conceptId2 = $category;
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for ($i = 2; $i < count($data); $i++){
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$conceptId2 = $conceptId2 . "::" . $data[$i];
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$concept_s = new JObject();
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$concept_s -> id = $conceptId2;
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$concept_s -> name = $concepts[$conceptId2] -> name;
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$concepts = isset($concepts[$conceptId2] -> concepts)?$concepts[$conceptId2] -> concepts:array();
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$concept_s -> concepts = $concepts;
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$concept -> concepts[] = $concept_s;
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}
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$concept->path = $this->getConceptPath($concept);
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return $concept;
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}
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//Get concept using id
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//returns concept object or error
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public function getConceptPath($concept){
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$path = $concept->context->name . ($concept->category != null?" > " . $concept->category->name:"");
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$concept_parts = array();
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foreach ($concept -> concepts as $concept_part){
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$concept_parts[] = $concept_part -> name;
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}
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$path = $path . (count($concept_parts)?" > " . implode(" > ", $concept_parts):"");
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return $path;
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}
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// Get the selected concepts stored in session.
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// return the selected concepts (array) or NULL if any errors occur
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public function getSelectedConcepts($suffix = self :: CLAIM) {
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try {
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$concepts = unserialize(JFactory :: getSession() -> get(self :: SELECTED_CONCEPTS . $suffix, serialize(array())));
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JLog :: add('Retrieved ' . count($concepts) . ' selected concepts', JLog :: INFO, self :: LOG);
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return $concepts;
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} catch (Exception $e) {
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JLog :: add('Error retrieving selected concepts: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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return NULL;
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}
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}
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// Add a project to the selected projects stored in session.
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// $project the project to add
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public function addSelectedConcept($concept, $suffix = self :: CLAIM) {
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try {
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$session = JFactory :: getSession();
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$concepts = unserialize($session -> get(self :: SELECTED_CONCEPTS . $suffix, serialize(array())));
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$concepts[$concept -> id] = $concept;
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$session -> set(self :: SELECTED_CONCEPTS . $suffix, serialize($concepts));
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JLog :: add('Added project ' . $concept -> id . ' to selected projects', JLog :: INFO, self :: LOG);
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} catch (Exception $e) {
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JLog :: add('Error adding project ' . $concept -> id . ' to selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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}
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}
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227
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// Remove a project from the selected projects stored in session.
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// $projectId the identifier of the project to remove
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229
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public function removeSelectedConcept($conceptId, $suffix = self :: CLAIM) {
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try {
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231
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$session = JFactory :: getSession();
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232
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$concepts = unserialize($session -> get(self :: SELECTED_CONCEPTS . $suffix, serialize(array())));
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233
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unset($concepts[$conceptId]);
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$session -> set(self :: SELECTED_CONCEPTS . $suffix, serialize($concepts));
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JLog :: add('Removed project ' . $conceptId . ' from selected projects', JLog :: INFO, self :: LOG);
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} catch (Exception $e) {
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JLog :: add('Error removing project ' . $conceptId . ' from selected projects: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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238
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}
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239
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}
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240
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241
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//empties selected concepts
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242
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public function emptySelectedConcepts($suffix = self :: CLAIM) {
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try {
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244
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$session = JFactory :: getSession();
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245
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$session -> set(self :: SELECTED_CONCEPTS . $suffix, serialize(array()));
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} catch (Exception $e) {
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247
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;
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248
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}
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249
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}
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250
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251
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252
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// Get the selected publications stored in session.
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253
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// return the selected publications (arary) or NULL if any errors occur
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254
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public function getSelectedPublications($suffix = self :: CLAIM) {
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255
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try {
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256
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$publications = unserialize(JFactory :: getSession() -> get(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array())));
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257
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JLog :: add('Retrieved ' . count($publications) . ' selected publications', JLog :: INFO, self :: LOG);
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258
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return $publications;
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259
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} catch (Exception $e) {
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260
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JLog :: add('Error retrieving selected publications: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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261
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return NULL;
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262
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}
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263
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}
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264
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265
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// Add a publication to the selected publications stored in session.
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266
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// $publication the publication to add
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267
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public function addSelectedPublication($publication, $suffix = self :: CLAIM) {
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268
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try {
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269
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$session = JFactory :: getSession();
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270
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$publications = unserialize($session -> get(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array())));
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271
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$publications[$publication -> source . $publication -> id] = $publication;
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272
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$session -> set(self :: SELECTED_PUBLICATIONS . $suffix, serialize($publications));
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273
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JLog :: add('Added ' . $publication -> source . ' publication ' . $publication -> id . ' to selected publications', JLog :: INFO, self :: LOG);
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274
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} catch (Exception $e) {
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275
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JLog :: add('Error adding ' . $publication -> source . ' publication ' . $publication -> id . ' to selected publications: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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276
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}
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277
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}
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278
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279
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// Remove a publication from the selected publications stored in session.
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280
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// $source the source of the publication to remove
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281
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// $publicationId the identifier of the publication to remove
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282
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public function removeSelectedPublication($source, $publicationId, $suffix = self :: CLAIM) {
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283
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try {
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284
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$session = JFactory :: getSession();
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285
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$publications = unserialize($session -> get(self :: SELECTED_PUBLICATIONS . $suffix, serialize(array())));
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286
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unset($publications[$source . $publicationId]);
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287
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$session -> set(self :: SELECTED_PUBLICATIONS. $suffix, serialize($publications));
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288
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JLog :: add('Removed ' . $source . ' publication ' . $publicationId . ' from selected publications', JLog :: INFO, self :: LOG);
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289
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} catch (Exception $e) {
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290
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JLog :: add('Error removing ' . $source . ' publication ' . $publicationId . ' from selected publications: ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
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291
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}
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292
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}
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|
293
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294
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// Claim all the selected publications.
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295
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// $user the user to claim publications for
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296
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public function claimSelectedPublications($user, $mode = self :: CLAIM, $activePublication = NULL, $suffix = "", $activePublicationType = "publication") {
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297
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try {
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298
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299
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$projects = array_map(function ($project) {
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300
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$p = array();
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301
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$p['projectId'] = $project -> id;
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302
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$p['funder'] = $project -> funder;
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303
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$p['fundingStreamLevel0'] = $project -> fundingStream;
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304
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$p['fundingStreamLevel1'] = $project -> scientificArea;
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305
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$p['fundingStreamLevel2'] = $project -> fundingStreamLevel2;
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306
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$p['name'] = $project -> title;
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307
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$p['code'] = $project -> code;
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308
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$p['acronym'] = $project -> acronym;
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309
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$p['type'] = NULL;
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310
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return new Project4Index($p);}, $this -> getSelectedProjects($mode.$suffix));
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311
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$projects_mini = array_map(function ($project) {
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312
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$project2 = new Project();
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313
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$project2 -> projectId = $project -> id;
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314
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$project2 -> type = NULL;
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315
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return $project2;}, $this -> getSelectedProjects($mode.$suffix));
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316
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$concepts = array_map(function ($concept) {return $concept -> id;}, $this -> getSelectedConcepts($mode.$suffix));
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317
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if ($mode != self :: CLAIMINLINE){
|
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318
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$selectedPublications = $this -> getSelectedPublications($mode.$suffix);
|
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319
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}
|
|
320
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else {
|
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321
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$selectedPublications = array($activePublication);
|
|
322
|
}
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323
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$dcSource = NULL;
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324
|
$subjects = array();
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325
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$category = NULL;
|
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326
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|
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327
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foreach ($selectedPublications as $publication) {
|
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328
|
$authors = array_map(function ($author) {
|
|
329
|
$a = array();
|
|
330
|
$a['id'] = $author -> id;
|
|
331
|
$a['firstName'] = $author -> firstName;
|
|
332
|
$a['lastName'] = $author -> lastName;
|
|
333
|
if (($author -> lastName == NULL) && ($author -> fullName != NULL))
|
|
334
|
$a['lastName'] = $author -> fullName;
|
|
335
|
return new Author($a);
|
|
336
|
}, $publication -> authors);
|
|
337
|
$doi = (($publication -> source == self :: DOI) || ($publication -> source == self :: DATACITE)) ? $publication -> id : NULL;
|
|
338
|
if ($mode != self :: CLAIMINLINE and $publication -> source != "openaire"){
|
|
339
|
JLog :: add("Projects--->". print_r($projects,true), JLog :: DEBUG, self :: LOG);
|
|
340
|
JLog :: add("Concepts--->". print_r($concepts,true), JLog :: DEBUG, self :: LOG);
|
|
341
|
$docId = $this -> client -> insertDocument($publication -> id, $publication -> source, $publication -> title, $publication -> description, isset($publication -> license)?$publication -> license:"", $publication -> embargoEndDate, $authors, $publication -> url, $dcSource, $user -> email, $subjects, $publication -> year, $publication -> publisher, $publication -> language, $category, $doi, $projects, $concepts);
|
|
342
|
}else{
|
|
343
|
|
|
344
|
$docId = $publication->id;
|
|
345
|
}
|
|
346
|
foreach ($concepts as $concept)
|
|
347
|
$this -> client -> insertConcept($docId, $publication -> source, $concept, $user -> email, $doi );
|
|
348
|
foreach ($projects_mini as $project){
|
|
349
|
//TODO Check if project is ok after
|
|
350
|
$this -> client -> insertProjectRelation($docId, $publication -> source, $project, $user -> email);
|
|
351
|
}
|
|
352
|
if ($activePublication != NULL && $mode === self::CLAIMINLINE2){
|
|
353
|
$this -> client -> insertResultRelation($activePublication -> id, $activePublicationType,
|
|
354
|
$activePublication -> source, $docId, $publication -> claim_type, $user -> email);
|
|
355
|
}
|
|
356
|
}
|
|
357
|
if ($this -> cache -> getCaching()){
|
|
358
|
$cacheId = self :: CLAIMED_PUBLICATIONS_CACHE_ID . '.' . $user -> username;
|
|
359
|
$this -> cache ->remove($cacheId);
|
|
360
|
}
|
|
361
|
JLog :: add('Claimed ' . count($selectedPublications) . ' publications (user: ' . $user -> username . ')', JLog :: INFO, self :: LOG);
|
|
362
|
return true;
|
|
363
|
} catch (Exception $e) {
|
|
364
|
JLog :: add('Error claiming selected publications (user: ' . $user -> username . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
365
|
return false;
|
|
366
|
}
|
|
367
|
}
|
|
368
|
|
|
369
|
// Get the publications claimed by a user using caching if enabled.
|
|
370
|
// $user the user whose claimed publications to retrieve
|
|
371
|
// return an array of publications
|
|
372
|
public function getClaimedPublications($user) {
|
|
373
|
/* if ($this -> cache -> getCaching()) {
|
|
374
|
$cacheId = self :: CLAIMED_PUBLICATIONS_CACHE_ID . '.' . $user -> username;
|
|
375
|
$publications = $this -> cache -> get($cacheId, self :: CACHE_GROUP);
|
|
376
|
if ($publications === FALSE) {
|
|
377
|
$publications = $this -> _getClaimedPublications($user);
|
|
378
|
if ($publications !== NULL)
|
|
379
|
$this -> cache -> store($publications, $cacheId, self :: CACHE_GROUP);
|
|
380
|
}
|
|
381
|
} else
|
|
382
|
*/ $publications = $this -> _getClaimedPublications($user);
|
|
383
|
return $publications;
|
|
384
|
}
|
|
385
|
|
|
386
|
// Get the publications claimed by a user using caching if enabled.
|
|
387
|
// $user the user whose claimed publications to retrieve
|
|
388
|
// return an array of publications
|
|
389
|
public function getAllClaimedPublications($from, $to) {
|
|
390
|
/*if ($this -> cache -> getCaching()) {
|
|
391
|
$cacheId = self :: CLAIMED_PUBLICATIONS_CACHE_ID . '.' . $from . "." . $to;
|
|
392
|
$publications = $this -> cache -> get($cacheId, self :: CACHE_GROUP);
|
|
393
|
if ($publications === FALSE) {
|
|
394
|
$publications = $this -> _getAllClaimedPublications($from, $to);
|
|
395
|
if ($publications !== NULL)
|
|
396
|
$this -> cache -> store($publications, $cacheId, self :: CACHE_GROUP);
|
|
397
|
}
|
|
398
|
} else*/
|
|
399
|
$publications = $this -> _getAllClaimedPublicationsExtended($from, $to);
|
|
400
|
return $publications;
|
|
401
|
}
|
|
402
|
|
|
403
|
// Get the publications claimed by a user.
|
|
404
|
// $user the user whose claimed publications to retrieve
|
|
405
|
// return an array of publications or NULL if any errors occur
|
|
406
|
private function _getClaimedPublications($user) {
|
|
407
|
try {
|
|
408
|
$locale = JFactory :: getLanguage()->getTag();
|
|
409
|
$claimedPublications = array();
|
|
410
|
$claimedPublicationsGrouped = array();
|
|
411
|
$time = microtime(TRUE);
|
|
412
|
$claims = $this -> client -> getClaimedPublications($user -> email);
|
|
413
|
foreach ($claims as $claim){
|
|
414
|
$parsedClaim = $this -> parseClaimedPublication($claim);
|
|
415
|
if ($parsedClaim == null)
|
|
416
|
continue;
|
|
417
|
$claimedPublications[] = $parsedClaim;
|
|
418
|
}
|
|
419
|
$resultsToGet = array();
|
|
420
|
$projectsToGet = array();
|
|
421
|
$claimedDocuments = array();
|
|
422
|
foreach ($claimedPublications as $claimedPublication){
|
|
423
|
if ($claimedPublication -> publication != null and $claimedPublication -> publication -> id != null)
|
|
424
|
$claimedDocuments[$claimedPublication->publicationId] = $claimedPublication -> publication;
|
|
425
|
if ($claimedPublication -> projectId !== null){
|
|
426
|
$projectsToGet[] = $claimedPublication -> projectId;
|
|
427
|
}
|
|
428
|
if ($claimedPublication -> targetPublicationId !== null){
|
|
429
|
$resultsToGet[] = $claimedPublication -> targetPublicationId;
|
|
430
|
}
|
|
431
|
if ($claimedPublication -> targetDatasetId !== null){
|
|
432
|
$resultsToGet[] = $claimedPublication -> targetDatasetId;
|
|
433
|
}
|
|
434
|
if (($claimedPublication -> publication == null || ($claimedPublication -> publication != null and $claimedPublication -> publication -> id == null))){
|
|
435
|
$resultsToGet[] = $claimedPublication -> publicationId;
|
|
436
|
}
|
|
437
|
if ($claimedPublication -> publication == null && $claimedPublication -> type == "dataset"){
|
|
438
|
$resultsToGet[] = $claimedPublication -> publicationId;
|
|
439
|
}
|
|
440
|
}
|
|
441
|
$resultsToGet = array_unique($resultsToGet);
|
|
442
|
$projectsToGet = array_unique($projectsToGet);
|
|
443
|
$searchModel = new OpenAireModelSearch();
|
|
444
|
$results = $searchModel->getResults($resultsToGet, $locale);
|
|
445
|
$projects = $searchModel->getProjects($projectsToGet, $locale);
|
|
446
|
$keydResults = array();
|
|
447
|
$keydProjects = array();
|
|
448
|
foreach ($results as $result)
|
|
449
|
$keydResults[$result->id] = $result;
|
|
450
|
foreach ($projects as $project)
|
|
451
|
$keydProjects[$project->id] = $project;
|
|
452
|
|
|
453
|
foreach ($claimedPublications as $claimedPublication){
|
|
454
|
if (!isset($claimedPublicationsGrouped[$claimedPublication -> publicationId])){
|
|
455
|
if ($claimedPublication -> publication == null || $claimedPublication -> publication -> id == null){
|
|
456
|
$publication = isset($keydResults[$claimedPublication -> publicationId])?$keydResults[$claimedPublication -> publicationId]:null;
|
|
457
|
}
|
|
458
|
else{
|
|
459
|
$publication = $claimedPublication -> publication;
|
|
460
|
}
|
|
461
|
if ($publication == null || $publication -> id == null)
|
|
462
|
continue;
|
|
463
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] = new stdClass();
|
|
464
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publicationId = $claimedPublication -> publicationId;
|
|
465
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date = $claimedPublication -> date;
|
|
466
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publication = $publication;
|
|
467
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publications = array();
|
|
468
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> datasets = array();
|
|
469
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> projects = array();
|
|
470
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts = array();
|
|
471
|
}
|
|
472
|
if ($claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date < $claimedPublication -> date)
|
|
473
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date = $claimedPublication -> date;
|
|
474
|
if ($claimedPublication -> publication != null){
|
|
475
|
$claimedConcepts = array();
|
|
476
|
foreach ($claimedPublication -> publication -> concepts as $concept){
|
|
477
|
$concept = $this->getConcept($concept);
|
|
478
|
$claimedConcept = new stdClass();
|
|
479
|
$claimedConcept->id = $concept->id;
|
|
480
|
$claimedConcept->title = $concept->path;
|
|
481
|
$claimedConcept->date = $claimedPublication->date;
|
|
482
|
$claimedConcepts[] = $claimedConcept;
|
|
483
|
}
|
|
484
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts = array_merge($claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts, $claimedConcepts);
|
|
485
|
}
|
|
486
|
if ($claimedPublication -> targetPublicationId !== null){
|
|
487
|
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetPublicationId ])?$keydResults[$claimedPublication -> targetPublicationId ]->title:null;
|
|
488
|
if ($claimedPublication->title == null){
|
|
489
|
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null;
|
|
490
|
}
|
|
491
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publications[] = $claimedPublication;
|
|
492
|
}
|
|
493
|
if ($claimedPublication -> targetDatasetId !== null){
|
|
494
|
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetDatasetId ])?$keydResults[$claimedPublication -> targetDatasetId ]->title:null;
|
|
495
|
if ($claimedPublication->title == null){
|
|
496
|
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null;
|
|
497
|
}
|
|
498
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> datasets[] = $claimedPublication;
|
|
499
|
}
|
|
500
|
if ($claimedPublication -> projectId !== null){
|
|
501
|
$claimedPublication->title = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->title:null;
|
|
502
|
$claimedPublication->acronym = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->acronym:null;
|
|
503
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> projects[] = $claimedPublication;
|
|
504
|
|
|
505
|
}
|
|
506
|
}
|
|
507
|
JLog :: add('Retrieved ' . count($claimedPublications) . ' claimed publications (user: ' . $user -> username . ') in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
508
|
return $claimedPublicationsGrouped;
|
|
509
|
} catch (Exception $e) {
|
|
510
|
JLog :: add('Error retrieving claimed publications (user: ' . $user -> username . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
511
|
return NULL;
|
|
512
|
}
|
|
513
|
}
|
|
514
|
public function _getAllClaimedPublications($from, $to) {
|
|
515
|
try {
|
|
516
|
// submit the docs
|
|
517
|
$claimedPublications = array();
|
|
518
|
$time1 = strtotime(str_replace("/", "-", $from)) * 1000;
|
|
519
|
$time2 = strtotime(str_replace("/", "-", $to)) * 1000;
|
|
520
|
$list = $this->client ->getAllClaimedPublications($time1, $time2);
|
|
521
|
foreach ($list as $claim){
|
|
522
|
$claimedPublications[] = $this -> parseClaimedPublication($claim);
|
|
523
|
}
|
|
524
|
}
|
|
525
|
catch (Exception $e) {
|
|
526
|
JLog :: add('Error retrieving all claims (from: ' . $from . ', to: '. $to .'): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
527
|
return NULL;
|
|
528
|
}
|
|
529
|
return $claimedPublications;
|
|
530
|
}
|
|
531
|
// Get the publications claimed
|
|
532
|
// return an array of publications or NULL if any errors occur
|
|
533
|
private function _getAllClaimedPublicationsExtended($from, $to) {
|
|
534
|
try {
|
|
535
|
$locale = JFactory :: getLanguage()->getTag();
|
|
536
|
$claimedPublications = array();
|
|
537
|
$claimedPublicationsExtended = array();
|
|
538
|
$time = microtime(TRUE);
|
|
539
|
$time1 = strtotime(str_replace("/", "-", $from)) * 1000;
|
|
540
|
$time2 = strtotime(str_replace("/", "-", $to)) * 1000;
|
|
541
|
$claims = $this->client ->getAllClaimedPublications($time1, $time2);
|
|
542
|
foreach ($claims as $claim){
|
|
543
|
$parsedClaim = $this -> parseClaimedPublication($claim);
|
|
544
|
if ($parsedClaim == null)
|
|
545
|
continue;
|
|
546
|
$claimedPublications[] = $parsedClaim;
|
|
547
|
}
|
|
548
|
$resultsToGet = array();
|
|
549
|
$projectsToGet = array();
|
|
550
|
$claimedDocuments = array();
|
|
551
|
foreach ($claimedPublications as $claimedPublication){
|
|
552
|
if ($claimedPublication -> publication != null and $claimedPublication -> publication -> id != null)
|
|
553
|
$claimedDocuments[$claimedPublication->publicationId] = $claimedPublication -> publication;
|
|
554
|
if ($claimedPublication -> projectId !== null){
|
|
555
|
$projectsToGet[] = $claimedPublication -> projectId;
|
|
556
|
}
|
|
557
|
if ($claimedPublication -> targetPublicationId !== null){
|
|
558
|
$resultsToGet[] = $claimedPublication -> targetPublicationId;
|
|
559
|
}
|
|
560
|
if ($claimedPublication -> targetDatasetId !== null){
|
|
561
|
$resultsToGet[] = $claimedPublication -> targetDatasetId;
|
|
562
|
}
|
|
563
|
if (($claimedPublication -> publication == null || ($claimedPublication -> publication != null and $claimedPublication -> publication -> id == null))){
|
|
564
|
$resultsToGet[] = $claimedPublication -> publicationId;
|
|
565
|
}
|
|
566
|
if ($claimedPublication -> publication == null && $claimedPublication -> type == "dataset"){
|
|
567
|
$resultsToGet[] = $claimedPublication -> publicationId;
|
|
568
|
}
|
|
569
|
}
|
|
570
|
$resultsToGet = array_unique($resultsToGet);
|
|
571
|
$projectsToGet = array_unique($projectsToGet);
|
|
572
|
$searchModel = new OpenAireModelSearch();
|
|
573
|
$results = $searchModel->getResults($resultsToGet, $locale);
|
|
574
|
$projects = $searchModel->getProjects($projectsToGet, $locale);
|
|
575
|
$keydResults = array();
|
|
576
|
$keydProjects = array();
|
|
577
|
foreach ($results as $result)
|
|
578
|
$keydResults[$result->id] = $result;
|
|
579
|
foreach ($projects as $project)
|
|
580
|
$keydProjects[$project->id] = $project;
|
|
581
|
|
|
582
|
foreach ($claimedPublications as $claimedPublication){
|
|
583
|
|
|
584
|
/* if ($claimedPublication -> publication == null || $claimedPublication -> publication -> id == null){
|
|
585
|
//print_r($claimedPublication -> publication -> concepts);
|
|
586
|
$claimedPublication -> publication = isset($keydResults[$claimedPublication -> publicationId])?$keydResults[$claimedPublication -> publicationId]:null;
|
|
587
|
}
|
|
588
|
*/
|
|
589
|
$claimedPublication->targetConceptId=null;
|
|
590
|
if ($claimedPublication -> publication != null && isset($claimedPublication -> publication -> concepts )){
|
|
591
|
$claimedConcepts = array();
|
|
592
|
foreach ($claimedPublication -> publication -> concepts as $concept){
|
|
593
|
$concept = $this->getConcept($concept);
|
|
594
|
$claimedConcept = new stdClass();
|
|
595
|
$claimedConcept->id = $concept->id;
|
|
596
|
$claimedConcept->title = $concept->path;
|
|
597
|
$claimedConcept->date = $claimedPublication->date;
|
|
598
|
$claimedConcepts[] = $claimedConcept;
|
|
599
|
$claimedPublication->title=$concept->path;
|
|
600
|
$claimedPublication->targetConceptId= $concept->id;
|
|
601
|
}
|
|
602
|
$claimedPublication -> concepts= $claimedConcepts;
|
|
603
|
}
|
|
604
|
if ($claimedPublication -> targetPublicationId !== null){
|
|
605
|
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetPublicationId ])?$keydResults[$claimedPublication -> targetPublicationId ]->title:null;
|
|
606
|
if ($claimedPublication->title == null){
|
|
607
|
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null;
|
|
608
|
}
|
|
609
|
}
|
|
610
|
if ($claimedPublication -> targetDatasetId !== null){
|
|
611
|
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetDatasetId ])?$keydResults[$claimedPublication -> targetDatasetId ]->title:null;
|
|
612
|
if ($claimedPublication->title == null){
|
|
613
|
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null;
|
|
614
|
}
|
|
615
|
}
|
|
616
|
if ($claimedPublication -> projectId !== null){
|
|
617
|
$claimedPublication->title = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->title:null;
|
|
618
|
$claimedPublication->acronym = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->acronym:null;
|
|
619
|
|
|
620
|
}
|
|
621
|
if ($claimedPublication -> publication == null || $claimedPublication -> publication -> id == null){
|
|
622
|
//print_r($claimedPublication -> publication -> concepts);
|
|
623
|
$claimedPublication -> publication = isset($keydResults[$claimedPublication -> publicationId])?$keydResults[$claimedPublication -> publicationId]:null;
|
|
624
|
}
|
|
625
|
}
|
|
626
|
JLog :: add('Retrieved ' . count($claimedPublications) . ' claimed publications in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
627
|
return $claimedPublications;
|
|
628
|
} catch (Exception $e) {
|
|
629
|
JLog :: add('Error retrieving claimed publications (user: ' . $user -> username . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
630
|
return NULL;
|
|
631
|
}
|
|
632
|
}
|
|
633
|
private function parseClaimedPublication($claim) {
|
|
634
|
$claimedPublication = new JObject();
|
|
635
|
$claimedPublication -> date = $claim -> date;
|
|
636
|
$claimedPublication -> claimType=$claim -> type;
|
|
637
|
$claimedPublication -> claimId=isset($claim -> id)?$claim -> id:'';
|
|
638
|
$document = new DOMDocument();
|
|
639
|
$document -> recover = TRUE;
|
|
640
|
if ($document -> loadXML(trim($claim -> xml)) == FALSE)
|
|
641
|
throw new Exception('invalid XML response');
|
|
642
|
$xPath = new DOMXPath($document);
|
|
643
|
switch ($claim -> type) {
|
|
644
|
case self :: RELATION:
|
|
645
|
if ((($relationNodes = $xPath -> query('/RELATIONS/RELATION')) == FALSE) || (($relationNode = $relationNodes -> item(0)) == NULL))
|
|
646
|
throw new Exception('error parsing relation');
|
|
647
|
if ((($sourceNodes = $xPath -> query('./@source', $relationNode)) == FALSE) || (($sourceNode = $sourceNodes -> item(0)) == NULL))
|
|
648
|
throw new Exception('error parsing relation source');
|
|
649
|
if ((($targetNodes = $xPath -> query('./@target', $relationNode)) == FALSE) || (($targetNode = $targetNodes -> item(0)) == NULL))
|
|
650
|
throw new Exception('error parsing relation target');
|
|
651
|
if ((($relationTypeNodes = $xPath -> query('./@type', $relationNode)) == FALSE) || (($relationTypeNode = $relationTypeNodes -> item(0)) == NULL))
|
|
652
|
throw new Exception('error parsing relation type');
|
|
653
|
|
|
654
|
$claimedPublication -> projectId = NULL;
|
|
655
|
$claimedPublication -> targetDatasetId = NULL;
|
|
656
|
$claimedPublication -> targetPublicationId = NULL;
|
|
657
|
$claimedPublication -> date = $claim -> date;
|
|
658
|
$claimedPublication -> type = "publication";
|
|
659
|
|
|
660
|
if ($relationTypeNode -> nodeValue == "resultProject"){
|
|
661
|
$claimedPublication -> projectId = trim(str_replace("40|", "", $targetNode -> nodeValue));
|
|
662
|
$claimedPublication -> type = "publication";
|
|
663
|
|
|
664
|
}
|
|
665
|
|
|
666
|
else if ($relationTypeNode -> nodeValue == "resultResult_publicationpublication_isRelatedTo"){
|
|
667
|
$sourceNode -> nodeValue = str_replace("50|", "", $sourceNode -> nodeValue);
|
|
668
|
$claimedPublication -> targetPublicationId = trim(str_replace("50|", "", $targetNode -> nodeValue));
|
|
669
|
$claimedPublication -> type = "publication";
|
|
670
|
}
|
|
671
|
|
|
672
|
else if ($relationTypeNode -> nodeValue == "resultResult_publicationdataset_isRelatedTo"){
|
|
673
|
$sourceNode -> nodeValue = str_replace("50|", "", $sourceNode -> nodeValue);
|
|
674
|
$claimedPublication -> targetDatasetId = trim(str_replace("50|", "", $targetNode -> nodeValue));
|
|
675
|
$claimedPublication -> type = "publication";
|
|
676
|
}
|
|
677
|
else if ($relationTypeNode -> nodeValue == "resultResult_datasetpublication_isRelatedTo"){// openaire dataset me publ
|
|
678
|
$sourceNode -> nodeValue = str_replace("50|", "", $sourceNode -> nodeValue);
|
|
679
|
$claimedPublication -> targetPublicationId = trim(str_replace("50|", "", $targetNode -> nodeValue));
|
|
680
|
$claimedPublication -> type = "dataset";
|
|
681
|
}
|
|
682
|
else if ($relationTypeNode -> nodeValue == "resultResult_datasetdataset_isRelatedTo"){// openaire dataset me ext dataset
|
|
683
|
$sourceNode -> nodeValue = str_replace("50|", "", $sourceNode -> nodeValue);
|
|
684
|
$claimedPublication -> targetDatasetId = trim(str_replace("50|", "", $targetNode -> nodeValue));
|
|
685
|
$claimedPublication -> type = "dataset";
|
|
686
|
}
|
|
687
|
else {
|
|
688
|
return null;
|
|
689
|
}
|
|
690
|
$claimedPublication -> publication = NULL;
|
|
691
|
$claimedPublication -> publicationId = str_replace("50|", "",trim($sourceNode -> nodeValue));
|
|
692
|
$claimedPublication -> userEmail = $claim -> userEmail;
|
|
693
|
break;
|
|
694
|
case self :: DMF:
|
|
695
|
$claimedPublication -> targetDatasetId = NULL;
|
|
696
|
$claimedPublication -> targetPublicationId = NULL;
|
|
697
|
$claimedPublication -> date = $claim -> date;
|
|
698
|
$claimedPublication -> publication = $this -> parseDMF($xPath);
|
|
699
|
$claimedPublication -> publicationId = $claim->resultid;
|
|
700
|
$claimedPublication -> projectId = NULL;
|
|
701
|
$claimedPublication -> userEmail = $claim -> userEmail;
|
|
702
|
break;
|
|
703
|
case self :: UPDATES2ACTIONS:
|
|
704
|
$claimedPublication -> targetDatasetId = NULL;
|
|
705
|
$claimedPublication -> targetPublicationId = NULL;
|
|
706
|
$claimedPublication -> date = $claim -> date;
|
|
707
|
$claimedPublication -> publication = $this -> parseDMF($xPath);
|
|
708
|
$claimedPublication -> publicationId = $claim->resultid;
|
|
709
|
$claimedPublication -> projectId = NULL;
|
|
710
|
$claimedPublication -> userEmail = $claim -> userEmail;
|
|
711
|
break;
|
|
712
|
}
|
|
713
|
return $claimedPublication;
|
|
714
|
}
|
|
715
|
|
|
716
|
private function parseDMF($xpath) {
|
|
717
|
$xpath -> registerNamespace('openaire', 'http://namespace.openaire.eu/');
|
|
718
|
$xpath -> registerNamespace('dc', 'http://purl.org/dc/elements/1.1/');
|
|
719
|
$xpath -> registerNamespace('oaf', 'http://namespace.openaire.eu/oaf');
|
|
720
|
$xpath -> registerNamespace('dr', 'http://www.driver-repository.eu/namespace/dr');
|
|
721
|
$conceptNodes = $xpath -> query('/record/openaire:metadata/oaf:concept/@id');
|
|
722
|
$publication = new JObject();
|
|
723
|
$publication -> id = NULL;
|
|
724
|
$publication -> source = NULL;
|
|
725
|
$publication -> languages = array();
|
|
726
|
$publication -> url = NULL;
|
|
727
|
$publication -> authors = array();
|
|
728
|
$publication -> subjects = array();
|
|
729
|
$publication -> concepts = array();
|
|
730
|
$publication -> embargoEndDate = NULL;
|
|
731
|
$publication -> datasources = array();
|
|
732
|
$publication -> collectedFrom = array();
|
|
733
|
$publication -> sources = array();
|
|
734
|
$publication -> projects = array();
|
|
735
|
$publication -> pids = array();
|
|
736
|
$publication -> relatedPublications = array();
|
|
737
|
$publication -> relatedDatasets = array();
|
|
738
|
$publication -> externalPublications = array();
|
|
739
|
$publication -> externalDatasets = array();
|
|
740
|
|
|
741
|
if (($identifierNodes = $xpath -> query('/record/openaire:metadata/dc:identifier|/record/openaire:metadata/oaf:identifier')) == FALSE){
|
|
742
|
//throw new Exception('error parsing DMF');
|
|
743
|
}
|
|
744
|
if (($accessModeNodes = $xpath -> query('/record/openaire:metadata/oaf:accessrights/text()')) == FALSE){
|
|
745
|
//throw new Exception('error parsing DMF');
|
|
746
|
}
|
|
747
|
if (($titleNodes = $xpath -> query('/record/openaire:metadata/dc:title/text()')) == FALSE){
|
|
748
|
//throw new Exception('error parsing DMF');
|
|
749
|
}
|
|
750
|
if (($authorNodes = $xpath -> query('/record/openaire:metadata/dc:creator/text()')) == FALSE){
|
|
751
|
//throw new Exception('error parsing DMF');
|
|
752
|
}
|
|
753
|
if (($dateNodes = $xpath -> query('/record/openaire:metadata/dc:dateAccepted/text()')) == FALSE){
|
|
754
|
//throw new Exception('error parsing DMF');
|
|
755
|
}
|
|
756
|
if (($publisherNodes = $xpath -> query('/record/openaire:metadata/dc:publisher/text()')) != FALSE){
|
|
757
|
$publication -> publisher = (($publisherNode = $publisherNodes -> item(0)) == NULL) ? NULL : trim($publisherNode -> nodeValue);
|
|
758
|
}
|
|
759
|
if (($languageNodes = $xpath -> query('/record/openaire:metadata/dc:language/text()')) != FALSE){
|
|
760
|
foreach ($languageNodes as $languageNode) {
|
|
761
|
if ((($language = trim($languageNode -> nodeValue)) != NULL) && ($language != self :: UNDETERMINED))
|
|
762
|
$publication -> languages[] = $language;
|
|
763
|
}
|
|
764
|
}
|
|
765
|
if (($typeNodes = $xpath -> query('/record/openaire:metadata/dr:CObjCategory/text()')) != FALSE){
|
|
766
|
$publication -> type = (($typeNode = $typeNodes -> item(0)) == NULL) ? NULL : trim($typeNode -> nodeValue);
|
|
767
|
}
|
|
768
|
if (($descriptionNodes = $xpath -> query('/record/openaire:metadata/dc:description/text()')) != FALSE){
|
|
769
|
$publication -> description = (($descriptionNode = $descriptionNodes -> item(0)) == NULL) ? NULL : trim($descriptionNode -> nodeValue);
|
|
770
|
}
|
|
771
|
if (($datasourceNodes = $xpath -> query('/record/openaire:metadata/oaf:hostedBy')) != FALSE){
|
|
772
|
foreach ($datasourceNodes as $datasourceNode) {
|
|
773
|
if (($idNodes = $xpath -> query('./@id', $datasourceNode)) == FALSE){
|
|
774
|
//throw new Exception('error parsing DMF');
|
|
775
|
}
|
|
776
|
if (($nameNodes = $xpath -> query('./@name', $datasourceNode)) == FALSE){
|
|
777
|
//throw new Exception('error parsing DMF');
|
|
778
|
}
|
|
779
|
$datasource = new JObject();
|
|
780
|
$datasource -> id = (($idNode = $idNodes -> item(0)) == NULL) ? NULL : trim($idNode -> nodeValue);
|
|
781
|
$datasource -> name = (($nameNode = $nameNodes -> item(0)) == NULL) ? NULL : trim($nameNode -> nodeValue);
|
|
782
|
$datasource -> url = NULL;
|
|
783
|
$datasource -> accessMode = NULL;
|
|
784
|
if (($datasource -> id != NULL) || ($datasource -> name != NULL))
|
|
785
|
$publication -> datasources[] = $datasource;
|
|
786
|
}
|
|
787
|
|
|
788
|
}
|
|
789
|
|
|
790
|
if (($collectedFromNodes = $xpath -> query('/record/openaire:metadata/oaf:collectedFrom')) != FALSE){
|
|
791
|
foreach ($collectedFromNodes as $collectedFromNode) {
|
|
792
|
if (($idNodes = $xpath -> query('./@id', $collectedFromNode)) == FALSE){
|
|
793
|
//throw new Exception('error parsing DMF');
|
|
794
|
|
|
795
|
}
|
|
796
|
if (($nameNodes = $xpath -> query('./@name', $collectedFromNode)) == FALSE){
|
|
797
|
//throw new Exception('error parsing DMF');
|
|
798
|
}
|
|
799
|
$collectedFrom = new JObject();
|
|
800
|
$collectedFrom -> id = (($idNode = $idNodes -> item(0)) == NULL) ? NULL : trim($idNode -> nodeValue);
|
|
801
|
$collectedFrom -> name = (($nameNode = $nameNodes -> item(0)) == NULL) ? NULL : trim($nameNode -> nodeValue);
|
|
802
|
if (($collectedFrom -> id != NULL) || ($collectedFrom -> name != NULL))
|
|
803
|
$publication -> collectedFrom[] = $collectedFrom;
|
|
804
|
}
|
|
805
|
}
|
|
806
|
|
|
807
|
if (($sourceNodes = $xpath -> query('/record/openaire:metadata/dc:source/text()')) != FALSE){
|
|
808
|
foreach ($sourceNodes as $sourceNode) {
|
|
809
|
if (($source = trim($sourceNode -> nodeValue)) != NULL)
|
|
810
|
$publication -> sources[] = $source;
|
|
811
|
}
|
|
812
|
}
|
|
813
|
|
|
814
|
if (($projectNodes = $xpath -> query('/record/openaire:metadata/oaf:projectid/text()')) != FALSE){
|
|
815
|
foreach ($projectNodes as $projectNode) {
|
|
816
|
$project = new JObject();
|
|
817
|
$project -> id = trim($projectNode -> nodeValue);
|
|
818
|
$project -> acronym = NULL;
|
|
819
|
$project -> title = NULL;
|
|
820
|
$project -> code = NULL;
|
|
821
|
if ($project -> id != NULL)
|
|
822
|
$publication -> projects[] = $project;
|
|
823
|
}
|
|
824
|
}
|
|
825
|
$publication -> accessMode = (($accessModeNode = $accessModeNodes -> item(0)) == NULL) ? NULL : trim($accessModeNode -> nodeValue);
|
|
826
|
$publication -> title = (($titleNode = $titleNodes -> item(0)) == NULL) ? NULL : trim($titleNode -> nodeValue);
|
|
827
|
$publication -> year = (($dateNode = $dateNodes -> item(0)) == NULL) ? NULL : intval(trim($dateNode -> nodeValue));
|
|
828
|
$publication -> date = ($dateNode == NULL) ? NULL : strtotime(trim($dateNode -> nodeValue));
|
|
829
|
if ($conceptNodes !== false){
|
|
830
|
foreach ($conceptNodes as $conceptNode) {
|
|
831
|
$publication -> concepts[] = trim($conceptNode -> nodeValue);
|
|
832
|
}
|
|
833
|
}
|
|
834
|
foreach ($authorNodes as $authorNode) {
|
|
835
|
if (($idNodes = $xpath -> query('./field[@name = "personId"]/@value', $authorNode)) == FALSE){
|
|
836
|
// throw new Exception('error parsing publication');
|
|
837
|
}
|
|
838
|
if (($fullNameNodes = $xpath -> query('./field[@name = "fullname"]/@value', $authorNode)) == FALSE){
|
|
839
|
// throw new Exception('error parsing publication');
|
|
840
|
}
|
|
841
|
if (($rankingNodes = $xpath -> query('./field[@name = "ranking"]/@value', $authorNode)) == FALSE){
|
|
842
|
//throw new Exception('error parsing publication');
|
|
843
|
}
|
|
844
|
$author = new JObject();
|
|
845
|
$author -> id = NULL;
|
|
846
|
$author -> lastName = NULL;
|
|
847
|
$author -> firstName = NULL;
|
|
848
|
$author -> fullName = trim($authorNode -> nodeValue);
|
|
849
|
$author -> ranking = 0;
|
|
850
|
if ($author -> fullName != NULL)
|
|
851
|
$publication -> authors[] = $author;
|
|
852
|
usort($publication -> authors, function ($author1, $author2) {return $author1 -> ranking - $author2 -> ranking;});
|
|
853
|
}
|
|
854
|
foreach ($identifierNodes as $identifierNode) {
|
|
855
|
|
|
856
|
$pid = new JObject();
|
|
857
|
$pid -> clazz=NULL;
|
|
858
|
$pid -> value=NULL;
|
|
859
|
if (($typeNodes = $xpath -> query('./@identifierType', $identifierNode)) != FALSE)
|
|
860
|
$pid -> clazz = (($typeNode = $typeNodes -> item(0)) == NULL) ? NULL : trim($typeNode -> nodeValue);
|
|
861
|
if (($textNodes = $xpath -> query('./text()', $identifierNode)) != FALSE)
|
|
862
|
$pid -> value = (($textNode = $textNodes -> item(0)) == NULL) ? NULL : trim($textNode -> nodeValue);
|
|
863
|
if ($pid -> value != NULL) {
|
|
864
|
if ($pid -> clazz == NULL && strpos($pid -> value , 'http') !==false){
|
|
865
|
$publication -> url = $pid -> value;
|
|
866
|
}else if ($pid -> clazz == NULL && strpos($pid -> value , 'http')===false ){
|
|
867
|
$publication -> id = $pid -> value;
|
|
868
|
$publication -> source = 'other';
|
|
869
|
$publication -> pids[] = $pid;
|
|
870
|
}
|
|
871
|
else if($pid -> clazz != NULL){
|
|
872
|
$publication -> id = $pid -> value;
|
|
873
|
$publication -> source = $pid -> clazz;
|
|
874
|
$publication -> pids[] = $pid;
|
|
875
|
}
|
|
876
|
}
|
|
877
|
}
|
|
878
|
|
|
879
|
return $publication;
|
|
880
|
}
|
|
881
|
|
|
882
|
private function _parseContextsConcepts($conceptNodes, &$parent, $xpath){
|
|
883
|
foreach ($conceptNodes as $conceptNode) {
|
|
884
|
if (($includeNodes = $xpath -> query('./@claim', $conceptNode)) == FALSE)
|
|
885
|
throw new Exception('error parsing publication');
|
|
886
|
if (($idNodes = $xpath -> query('./@id', $conceptNode)) == FALSE)
|
|
887
|
throw new Exception('error parsing publication');
|
|
888
|
if (($nameNodes = $xpath -> query('./@label', $conceptNode)) == FALSE)
|
|
889
|
throw new Exception('error parsing publication');
|
|
890
|
if (($subConceptNodes = $xpath -> query('./concept', $conceptNode)) == FALSE)
|
|
891
|
throw new Exception('error parsing publication');
|
|
892
|
$concept = new JObject();
|
|
893
|
$concept -> id = (($idNode = $idNodes -> item(0)) == NULL) ? NULL : trim($idNode -> nodeValue);
|
|
894
|
$concept -> name = (($nameNode = $nameNodes -> item(0)) == NULL) ? NULL : trim($nameNode -> nodeValue);
|
|
895
|
$concept -> claim = (($includeNode = $includeNodes -> item(0)) == NULL) ? NULL : trim($includeNode -> nodeValue);
|
|
896
|
if ($concept -> claim != NULL){
|
|
897
|
$concept -> claim = ($concept -> claim == "true") ? true : false;
|
|
898
|
}
|
|
899
|
$concept -> concepts = array();
|
|
900
|
$this->_parseContextsConcepts($subConceptNodes, $concept -> concepts, $xpath);
|
|
901
|
|
|
902
|
if (($concept -> id != NULL) || ($concept -> name != NULL))
|
|
903
|
$parent[$concept -> id] = $concept;
|
|
904
|
}
|
|
905
|
}
|
|
906
|
|
|
907
|
public function parseContexts($context_source){
|
|
908
|
$document = new DOMDocument();
|
|
909
|
$document -> recover = TRUE;
|
|
910
|
if ($document -> loadXML($context_source) == FALSE)
|
|
911
|
throw new Exception('invalid XML response');
|
|
912
|
$xpath = new DOMXPath($document);
|
|
913
|
if ((($configurationNodes = $xpath -> query('./BODY/CONFIGURATION')) == FALSE) || (($configurationNode = $configurationNodes -> item(0)) == NULL))
|
|
914
|
throw new Exception('error parsing contexts');
|
|
915
|
|
|
916
|
if (($contextNodes = $xpath -> query('./context', $configurationNode)) == FALSE)
|
|
917
|
throw new Exception('error parsing contexts');
|
|
918
|
|
|
919
|
$contexts = array();
|
|
920
|
foreach ($contextNodes as $contextNode) {
|
|
921
|
if (($includeNodes = $xpath -> query('./@claim', $contextNode)) == FALSE)
|
|
922
|
throw new Exception('error parsing publication');
|
|
923
|
if (($idNodes = $xpath -> query('./@id', $contextNode)) == FALSE)
|
|
924
|
throw new Exception('error parsing publication');
|
|
925
|
if (($nameNodes = $xpath -> query('./@label', $contextNode)) == FALSE)
|
|
926
|
throw new Exception('error parsing publication');
|
|
927
|
if (($categoryNodes = $xpath -> query('./category', $contextNode)) == FALSE)
|
|
928
|
throw new Exception('error parsing publication');
|
|
929
|
$context = new JObject();
|
|
930
|
$context -> id = (($idNode = $idNodes -> item(0)) == NULL) ? NULL : trim($idNode -> nodeValue);
|
|
931
|
$context -> name = (($nameNode = $nameNodes -> item(0)) == NULL) ? NULL : trim($nameNode -> nodeValue);
|
|
932
|
$context -> claim = (($includeNode = $includeNodes -> item(0)) == NULL) ? NULL : trim($includeNode -> nodeValue);
|
|
933
|
if ($context -> claim != NULL){
|
|
934
|
$context -> claim = ($context -> claim == "true") ? true : false;
|
|
935
|
}
|
|
936
|
$context -> categories = array();
|
|
937
|
foreach ($categoryNodes as $categoryNode) {
|
|
938
|
if (($includeNodes = $xpath -> query('./@claim', $categoryNode)) == FALSE)
|
|
939
|
throw new Exception('error parsing publication');
|
|
940
|
if (($idNodes = $xpath -> query('./@id', $categoryNode)) == FALSE)
|
|
941
|
throw new Exception('error parsing publication');
|
|
942
|
if (($nameNodes = $xpath -> query('./@label', $categoryNode)) == FALSE)
|
|
943
|
throw new Exception('error parsing publication');
|
|
944
|
if (($conceptNodes = $xpath -> query('./concept', $categoryNode)) == FALSE)
|
|
945
|
throw new Exception('error parsing publication');
|
|
946
|
$category = new JObject();
|
|
947
|
$category -> id = (($idNode = $idNodes -> item(0)) == NULL) ? NULL : trim($idNode -> nodeValue);
|
|
948
|
$category -> name = (($nameNode = $nameNodes -> item(0)) == NULL) ? NULL : trim($nameNode -> nodeValue);
|
|
949
|
$category -> claim = (($includeNode = $includeNodes -> item(0)) == NULL) ? NULL : trim($includeNode -> nodeValue);
|
|
950
|
if ($category -> claim != NULL){
|
|
951
|
$category -> claim = ($category -> claim == "true") ? true : false;
|
|
952
|
}
|
|
953
|
$category -> concepts = array();
|
|
954
|
$this->_parseContextsConcepts($conceptNodes, $category -> concepts, $xpath);
|
|
955
|
|
|
956
|
if ((($category -> id != NULL) || ($category -> name != NULL) || ($category -> concepts != NULL) ) && ( $category -> claim!= null && $category -> claim == true))
|
|
957
|
$context -> categories[$category -> id] = $category;
|
|
958
|
}
|
|
959
|
if ((($context -> id != NULL) || ($context -> name != NULL)) && ($context -> categories != NULL && sizeof($context -> categories)>0))
|
|
960
|
$contexts[$context -> id] = $context;
|
|
961
|
}
|
|
962
|
return $contexts;
|
|
963
|
}
|
|
964
|
|
|
965
|
public function getContexts() {
|
|
966
|
try {
|
|
967
|
$time = microtime(TRUE);
|
|
968
|
$contexts = $this -> client -> getContexts();
|
|
969
|
if(!isset($contexts[0])){
|
|
970
|
throw new Exception('error retrieving contexts:'. print_r($contexts,true));
|
|
971
|
}
|
|
972
|
$parsedContexts = array();
|
|
973
|
foreach($contexts as $context){
|
|
974
|
$parsedContexts = array_merge($parsedContexts, $this -> parseContexts($context));
|
|
975
|
}
|
|
976
|
$contexts= $parsedContexts;
|
|
977
|
JLog :: add('Retrieved ' . count($contexts) . ' contexts in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
978
|
return $contexts;
|
|
979
|
} catch (Exception $e) {
|
|
980
|
JLog :: add('Error retrieving contexts ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
981
|
return NULL;
|
|
982
|
}
|
|
983
|
}
|
|
984
|
// Get the publications claimed by a user using caching if enabled.
|
|
985
|
// $user the user whose claimed publications to retrieve
|
|
986
|
// return an array of publications
|
|
987
|
public function getClaimedDocsByUser($user) {
|
|
988
|
try {
|
|
989
|
$time = microtime(TRUE);
|
|
990
|
$claimedDocs = $this -> client -> getClaimedPublications($user -> email);
|
|
991
|
$publications = $this -> parseClaimedDocs($claimedDocs);
|
|
992
|
JLog :: add('Retrieved ' . count($publications) . ' claimed publications (user: ' . $user -> username . ') in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
993
|
return $publications;
|
|
994
|
} catch (Exception $e) {
|
|
995
|
JLog :: add('Error retrieving claimed publications (user: ' . $user -> username . '): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
996
|
return NULL;
|
|
997
|
}
|
|
998
|
}
|
|
999
|
|
|
1000
|
// Get the publications claimed by a user using caching if enabled.
|
|
1001
|
// $user the user whose claimed publications to retrieve
|
|
1002
|
// return an array of publications
|
|
1003
|
public function getClaimedDocsByTime($from, $to) {
|
|
1004
|
try {
|
|
1005
|
$time = microtime(TRUE);
|
|
1006
|
$time1 = strtotime(str_replace("/", "-", $from)) * 1000;
|
|
1007
|
$time2 = (strtotime(str_replace("/", "-", $to.' 23:59:59' ))) * 1000;
|
|
1008
|
$claimedDocs = $this->client ->getAllClaimedPublications($time1, $time2);
|
|
1009
|
$publications = $this -> parseClaimedDocs($claimedDocs);
|
|
1010
|
JLog :: add('Retrieved ' . count($claimedDocs) .' Parsed ' . count($publications) . ' claimed publications(from: ' . $from . ', to: '. $to .') in ' . (microtime(TRUE) - $time) . ' s', JLog :: INFO, self :: LOG);
|
|
1011
|
JLog :: add('Time1 : '.strtotime(str_replace("/", "-", $from)).' from: ' . $time1 . ', to :'. strtotime(str_replace("/", "-", $to)).' time2: '. $time2 .') time: '.$time , JLog :: INFO, self :: LOG);
|
|
1012
|
return $publications;
|
|
1013
|
} catch (Exception $e) {
|
|
1014
|
JLog :: add('Error retrieving all claims (from: ' . $from . ', to: '. $to .'): ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
1015
|
return NULL;
|
|
1016
|
}
|
|
1017
|
}
|
|
1018
|
public function deleteClaim($email, $id) {
|
|
1019
|
try {
|
|
1020
|
$this->client ->deleteClaim($email, $id);
|
|
1021
|
|
|
1022
|
JLog :: add('Deleting claim', JLog :: INFO, self :: LOG);
|
|
1023
|
|
|
1024
|
|
|
1025
|
} catch (Exception $e) {
|
|
1026
|
JLog :: add('Error deleting claim ' . $e -> getMessage(), JLog :: ERROR, self :: LOG);
|
|
1027
|
|
|
1028
|
}
|
|
1029
|
}
|
|
1030
|
public function parseClaimedDocs($claimedDocs ) {
|
|
1031
|
$locale = JFactory :: getLanguage()->getTag();
|
|
1032
|
$claimedPublications = array();
|
|
1033
|
$claimedPublicationsGrouped = array();
|
|
1034
|
$time = microtime(TRUE);
|
|
1035
|
foreach ($claimedDocs as $claim){
|
|
1036
|
$parsedClaim = $this -> parseClaimedPublication($claim);
|
|
1037
|
if ($parsedClaim == null){
|
|
1038
|
continue;
|
|
1039
|
}
|
|
1040
|
$claimedPublications[] = $parsedClaim;
|
|
1041
|
}
|
|
1042
|
$resultsToGet = array();
|
|
1043
|
$projectsToGet = array();
|
|
1044
|
$claimedDocuments = array();
|
|
1045
|
foreach ($claimedPublications as $claimedPublication){
|
|
1046
|
if ($claimedPublication -> publication != null and $claimedPublication -> publication -> id != null){
|
|
1047
|
$claimedDocuments[$claimedPublication->publicationId] = $claimedPublication -> publication;
|
|
1048
|
}
|
|
1049
|
if ($claimedPublication -> projectId !== null){
|
|
1050
|
$projectsToGet[] = $claimedPublication -> projectId;
|
|
1051
|
}
|
|
1052
|
if ($claimedPublication -> targetPublicationId !== null){
|
|
1053
|
$resultsToGet[] = $claimedPublication -> targetPublicationId;
|
|
1054
|
}
|
|
1055
|
if ($claimedPublication -> targetDatasetId !== null){
|
|
1056
|
$resultsToGet[] = $claimedPublication -> targetDatasetId;
|
|
1057
|
}
|
|
1058
|
if (($claimedPublication -> publication == null || ($claimedPublication -> publication != null and $claimedPublication -> publication -> id == null))){
|
|
1059
|
$resultsToGet[] = $claimedPublication -> publicationId;
|
|
1060
|
}
|
|
1061
|
if ($claimedPublication -> publication == null && $claimedPublication -> type == "dataset"){
|
|
1062
|
$resultsToGet[] = $claimedPublication -> publicationId;
|
|
1063
|
}
|
|
1064
|
|
|
1065
|
}
|
|
1066
|
$resultsToGet = array_unique($resultsToGet);
|
|
1067
|
$projectsToGet = array_unique($projectsToGet);
|
|
1068
|
$searchModel = new OpenAireModelSearch();
|
|
1069
|
$results = $searchModel->getResults($resultsToGet, $locale);
|
|
1070
|
$projects = $searchModel->getProjects($projectsToGet, $locale);
|
|
1071
|
$keydResults = array();
|
|
1072
|
$keydProjects = array();
|
|
1073
|
foreach ($results as $result){
|
|
1074
|
$keydResults[$result->id] = $result;
|
|
1075
|
}
|
|
1076
|
foreach ($projects as $project)
|
|
1077
|
$keydProjects[$project->id] = $project;
|
|
1078
|
|
|
1079
|
foreach ($claimedPublications as $claimedPublication){
|
|
1080
|
if (!isset($claimedPublicationsGrouped[$claimedPublication -> publicationId])){
|
|
1081
|
if ($claimedPublication -> publication == null || $claimedPublication -> publication -> id == null||isset($keydResults[$claimedPublication -> publicationId])){
|
|
1082
|
$publication = isset($keydResults[$claimedPublication -> publicationId])?$keydResults[$claimedPublication -> publicationId]:null;
|
|
1083
|
}
|
|
1084
|
else{
|
|
1085
|
$publication = $claimedPublication -> publication;
|
|
1086
|
}
|
|
1087
|
if ($publication == null )
|
|
1088
|
continue;
|
|
1089
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] = new stdClass();
|
|
1090
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publicationId = $claimedPublication -> publicationId;
|
|
1091
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date = $claimedPublication -> date;
|
|
1092
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publication = $publication;
|
|
1093
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publications = array();
|
|
1094
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> datasets = array();
|
|
1095
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> projects = array();
|
|
1096
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts = array();
|
|
1097
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> type = isset($claimedPublication -> type)?$claimedPublication -> type:'Publication';
|
|
1098
|
//$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> claimType = $claimedPublication -> claimType;
|
|
1099
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publication -> userEmail = $claimedPublication -> userEmail;
|
|
1100
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publication -> claimId = $claimedPublication -> claimId;
|
|
1101
|
}
|
|
1102
|
if ($claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date < $claimedPublication -> date)
|
|
1103
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> date = $claimedPublication -> date;
|
|
1104
|
if ($claimedPublication -> publication != null){
|
|
1105
|
// $claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publication=(isset($keydResults[$claimedPublication -> publicationId])&&($keydResults[$claimedPublication -> publicationId]!==null))? $keydResults[$claimedPublication -> publicationId]:$claimedPublication -> publication;
|
|
1106
|
$claimedConcepts = array();
|
|
1107
|
foreach ($claimedPublication -> publication -> concepts as $concept){
|
|
1108
|
$concept = $this->getConcept($concept);
|
|
1109
|
if(!isset( $concept)){
|
|
1110
|
$concept = new stdClass();
|
|
1111
|
}
|
|
1112
|
$claimedConcept = new stdClass();
|
|
1113
|
$claimedConcept->id = isset($concept->id)?$concept->id:'';
|
|
1114
|
$claimedConcept->title = isset($concept->path)?$concept->path:'';
|
|
1115
|
$claimedConcept->date = $claimedPublication->date;
|
|
1116
|
$claimedConcept-> userEmail = $claimedPublication -> userEmail;
|
|
1117
|
$claimedConcept -> claimId = $claimedPublication -> claimId;
|
|
1118
|
//$claimedConcepts[] = $claimedConcept;
|
|
1119
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts[]=$claimedConcept;
|
|
1120
|
}
|
|
1121
|
//$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts = array_merge($claimedPublicationsGrouped[$claimedPublication -> publicationId] -> concepts, $claimedConcepts);
|
|
1122
|
}
|
|
1123
|
if ($claimedPublication -> targetPublicationId !== null){
|
|
1124
|
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetPublicationId ])?$keydResults[$claimedPublication -> targetPublicationId ]->title:null;
|
|
1125
|
if ($claimedPublication->title == null){
|
|
1126
|
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetPublicationId ])?$claimedDocuments[$claimedPublication -> targetPublicationId ]->title:null;
|
|
1127
|
}
|
|
1128
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> publications[] = $claimedPublication;
|
|
1129
|
}
|
|
1130
|
if ($claimedPublication -> targetDatasetId !== null){
|
|
1131
|
$claimedPublication->title = isset($keydResults[$claimedPublication -> targetDatasetId ])?$keydResults[$claimedPublication -> targetDatasetId ]->title:null;
|
|
1132
|
if ($claimedPublication->title == null){
|
|
1133
|
$claimedPublication->title = isset($claimedDocuments[$claimedPublication -> targetDatasetId ])?$claimedDocuments[$claimedPublication -> targetDatasetId ]->title:null;
|
|
1134
|
}
|
|
1135
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> datasets[] = $claimedPublication;
|
|
1136
|
}
|
|
1137
|
if ($claimedPublication -> projectId !== null){
|
|
1138
|
$claimedPublication->title = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->title:null;
|
|
1139
|
$claimedPublication->acronym = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->acronym:null;
|
|
1140
|
$claimedPublication->funder = isset($keydProjects[$claimedPublication -> projectId ])?$keydProjects[$claimedPublication -> projectId ]->funder:null;
|
|
1141
|
$claimedPublicationsGrouped[$claimedPublication -> publicationId] -> projects[] = $claimedPublication;
|
|
1142
|
}
|
|
1143
|
}
|
|
1144
|
return $claimedPublicationsGrouped;
|
|
1145
|
}
|
|
1146
|
}
|
|
1147
|
|