D-Net

#1395 WorkflowRuntimeParameters static fields cleanup, moving parameters to dedicated modules to prevent excessing icm-iis-common module modifications

#1329 adding affiliations field in ExtractedDocumentMetadata PMC schema. Metadata extraction code refactoring by extracting code responsible for building Affiliation avro records to AffiliationBuilder class and sharing it with pmc ingestion. Implementing affiliations ingestion functionality in PmcXmlHandler covered with unit tests. Adding affiliations field support in ingest pmc metadata transformer.

#1240 raising mapred.task.timeout to 3600000 (1h) just in case any extremely complex PDF document appear. All time consuming documents will be registered in failure sink.

#1257 dropping schema generation related hacks in all map-reduce modules, switching to literal schema parameters

#1248 persisting content url in supplementaryData to make it easier to find content causing failure

#1248 bugfix renaming inputEntityId to inputObjectId after schema changes

#1248 introducing failures sink datastore support in metadata extraction module

#1240 extending mapred.task.timeout for metadata extraction to 30 minutes

Removing usage of working_dir from Java workflow node.

#953 extending maximum heap size from 2048 to 4096 after Dominika introduced iText dependency upgrade to 5.5.3 in cermine. This combination should minimize the possibility of failures caused by fatal OOMErr.