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<?php
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require_once('./js/log4php/Logger.php');
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require_once('./paths.php');
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require_once('./MYDB.php');
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/* TOOD Eri: Class for recomputing stats numbers present in the portal.
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Queries are saved both here and the portal plugin.
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*/
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class ComputeStatsNumbers {
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private $log;
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private $db;
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private $cache = null; //predis
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public function __construct(){
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global $redis_host;
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global $redis_port;
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global $redis_scheme;
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global $db_name;
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GLOBAL $username;
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global $password;
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global $host;
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$this->log = Logger::getLogger(__CLASS__);
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Logger::configure('./js/log4php/log4php.xml');
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if(class_exists("Predis\Client")){
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try {
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//todo changed timeout from 0 to -1
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$this->cache = new Predis\Client(array("scheme" => $redis_scheme,"host" => $redis_host,"port" => $redis_port,"read_write_timeout" => -1));
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$this->log->info("redis host: ".$redis_host." and redis port: ".$redis_port);
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} catch(Exception $e) {
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$this->log->error("Error connecting to Redis server: ".$e->getMessage());
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$this->cache = null;
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}
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}
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else{
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$this->log->info("cache does not exist"); //predis
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exit;
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}
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//NOW GET DB
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try {
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$str = 'pgsql:host='.$host.";port=5432;dbname=".$db_name.";user=".$username.";password=".$password;
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$this->db = new PDO($str);
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//TODO set search path here
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} catch(Exception $e){
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$this->log->error('Could not connect to database: ' . $e->getMessage());
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exit;
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}
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}
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private function doQuery($query){
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$stmt = $this->db->query($query);
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if(!$stmt){
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$arr = $this->db->errorInfo();
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$this->log->error("Error executing query: ".$query." ".$arr[2]);
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return "-";
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}
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$t = $stmt->fetch();
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return number_format($t[0]);
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}
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//TODO here store Queries in cache
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private function storeQuery($key, $query) {
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$res=$this->doQuery($query);
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//$this->cache = new Predis\Client(array("scheme" => $redis_scheme, "host" => $redis_host, "port" => $redis_port));
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$this->cache->connect(); //predis
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$this->cache->hset('SHADOW_STATS_NUMBERS',$key,$res);
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$this->log->info("Stored query : ".$key." ".$this->cache->hget('SHADOW_STATS_NUMBERS',$key));
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$this->cache->quit();
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}
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function computeStats() {
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global $redis_host;
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/*OVERALL*/
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/*1*/
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$qpubs = "SELECT count(*) FROM result where type='publication'";
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/*2*/
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$qoapubs = "SELECT count(*) FROM result WHERE bestlicense='Open Access' and type='publication'";
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/*3*/
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$qnoapubs = "SELECT count(*) FROM result WHERE bestlicense='Closed Access' and type='publication'";
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/*4*/
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$qfpubs = "SELECT count(distinct result_projects.id) FROM result, result_projects where result.result_projects = result_projects.id and type='publication'";
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/*5*/
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$qproj = "SELECT count(*) FROM project";
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/*DATASOURCES*/
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/*6*/
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$qdatasrc = "SELECT count(*) FROM datasource";
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/*7*/
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$qdtsrcpubs = "select count(*) from datasource where compatibility != 'not available' and compatibility != 'under validation'";
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/*8*/
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$qdtsrcpubreps = "SELECT count(*) FROM datasource WHERE type='Publication Repository'";
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/*9*/
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$qdtsrcoaj = "SELECT count(*) FROM datasource WHERE type='Journal Platform'";
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/*10*/
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$qdtsrcpubaggr = "SELECT count(*) FROM datasource WHERE type like 'Aggreg%'";
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/*10*/
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$qdtsrcdatarepo = "SELECT count(*) FROM datasource WHERE type = 'Data Repository'";
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/*FUNDER*/
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/*11*/
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$qfunders = "SELECT count(distinct funding_lvl0) FROM project WHERE funding_lvl0 !=''";
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129
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/*FP7*/
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/*12: total number of fp7 pubs */
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$qfp7pubstotal = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects = result_projects.id and type='publication' and result_projects.project = project.id and funding_lvl0 = 'FP7'";
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/*13: number of fp7 projects with publications*/
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$qfp7projpubs = "SELECT count(distinct project.id) FROM result, result_projects, project WHERE result.result_projects = result_projects.id and type='publication' and result_projects.project = project.id and funding_lvl0='FP7'";
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/*14: total number of fp7 projects*/
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$qfp7projtotal = "SELECT count(id) FROM project WHERE funding_lvl0 = 'FP7'";
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/*15: fp7 open access pubs*/
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$qfp7oapubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result_projects = result_projects.id AND result_projects.project = project.id and type='publication' and funding_lvl0 = 'FP7' and bestlicense='Open Access'";
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/*16: fp7 restricted pubs*/
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$qfp7respubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects=result_projects.id AND result_projects.project = project.id and funding_lvl0 = 'FP7' and bestlicense='Restricted' and type='publication'";
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/*17: fp7 pubs in embargo*/
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$qfp7embpubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects = result_projects.id AND result_projects.project = project.id and funding_lvl0 = 'FP7' and bestlicense='Embargo' and type='publication'";
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/*18: total number of fp7 pubs with sc39*/
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$qsc39fp7pubstotal = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result_projects.project = project.id and funding_lvl0 = 'FP7' and sc39='yes' and result.result_projects = result_projects.id and type='publication'";
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/*19: fp7 projs with sc39 and pubs*/
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$qsc39fp7projpubs = "SELECT count(distinct project.id) FROM result, result_projects, project WHERE result_projects.project=project.id and funding_lvl0 = 'FP7' and sc39='yes' and result.result_projects = result_projects.id and type='publication'";
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/*20: total number of fp7 proj with sc39*/
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$qsc39fp7projtotal = "SELECT count(number) from project where funding_lvl0='FP7' and sc39='yes'";
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/*21: open access fp7 pubs with sc39*/
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$qsc39fp7oapubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects = result_projects.id AND result_projects.project = project.id and funding_lvl0 = 'FP7' and bestlicense='Open Access' and sc39='yes' and type='publication'";
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161
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162
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/*ERC*/
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/*22: total number of erc pubs*/
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$qercpubstotal = "SELECT count( distinct result.id) FROM result, project, result_projects where result_projects.project = project.id and project.funding_lvl2='ERC' and result.result_projects = result_projects.id and result.type='publication'";
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/*23: erc projects with pubs*/
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$qercprojpubs = "SELECT count(distinct project.id) FROM result, project, result_projects where result_projects.project = project.id and project.funding_lvl2='ERC' and result.result_projects = result_projects.id and type='publication'";
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/*24: total erc projects*/
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$qercprojtotal = "SELECT count(id) FROM project WHERE funding_lvl2 = 'ERC'";
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/*25: erc open access pubs*/
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$qercoapubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects= result_projects.id AND result_projects.project = project.id and funding_lvl2 = 'ERC' and bestlicense='Open Access' and type='publication'";
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/*26: erc restricted pubs*/
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$qercrespubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects = result_projects.id AND result_projects.project = project.id and funding_lvl2 = 'ERC' and bestlicense='Restricted' and type='publication'";
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/*27: erc embargo pubs*/
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$qercembpubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects=result_projects.id AND result_projects.project = project.id and funding_lvl2 = 'ERC' and bestlicense='Embargo' and type='publication'";
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/*Wellcome Trust*/
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/*28: total number of wt pubs*/
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$qwtpubstotal = "SELECT count(distinct result_projects.id) FROM result,result_projects, project WHERE result.result_projects= result_projects.id AND result_projects.project = project.id and funder ='Wellcome Trust' and type='publication'";
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/*29: wt projects with pubs*/
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$qwtprojpubs = "SELECT count(distinct project.id) FROM result, project, result_projects where result_projects.project = project.id and project.funder='Wellcome Trust' and result.result_projects = result_projects.id and type='publication'";
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/*30: total wt projects*/
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$qwtprojtotal = "SELECT count(id) FROM project WHERE funder ='Wellcome Trust'";
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/*31: wt open access pubs*/
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$qwtoapubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects= result_projects.id AND result_projects.project = project.id and funder ='Wellcome Trust' and bestlicense='Open Access' and type='publication'";
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/*32: wt restricted pubs*/
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$qwtrespubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects = result_projects.id AND result_projects.project = project.id and funder='Wellcome Trust' and bestlicense='Restricted' and type='publication'";
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201
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/*33: wt embargo pubs*/
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$qwtembpubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects=result_projects.id AND result_projects.project = project.id and funder ='Wellcome Trust' and bestlicense='Embargo' and type='publication'";
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/*FET */
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$fetpubs ="select count(distinct rc.id) as field0 from result_concepts rc join concept c on c.id=rc.concept join category cat on cat.id=c.category where cat.context like 'fet%'";
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$fetoapubs ="select count(distinct rc.id) as field0 from result_concepts rc join result r on r.id=rc.id join concept c on c.id=rc.concept join category cat on cat.id=c.category where cat.context like 'fet%' and r. bestlicense='Open Access'";
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/*
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$fet_noa_pubs ="select count(distinct rc.id) as field0 from result_concepts rc join result r on r.id=rc.id join concept c on c.id=rc.concept join category cat on cat.id=c.category where cat.context ='fet' and r. bestlicense='Closed Access'";*/
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$fetembpubs ="select count(distinct rc.id) as field0 from result_concepts rc join result r on r.id=rc.id join concept c on c.id=rc.concept join category cat on cat.id=c.category where cat.context like 'fet%' and r. bestlicense='Embargo'";
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$fetrespubs ="select count(distinct rc.id) as field0 from result_concepts rc join result r on r.id=rc.id join concept c on c.id=rc.concept join category cat on cat.id=c.category where cat.context like 'fet%' and r. bestlicense='Restricted'";
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216
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217
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218
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219
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/*Natalia's extra stuff */
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220
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221
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222
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/*35: organisations with publication results */
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$org_withpubs = "select count(*) from (select dor.organization as organization from datasource_organizations dor join result_datasources rd on rd.datasource=dor.id join result r on r.id=rd.id where r.type='publication' union select por.organization as organization from project_organizations por join result_projects rp on rp.project=por.id join result r on r.id=rp.id where r.type='publication') as foo";
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224
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225
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/*36: number of datasets */
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$data_total = "select count(distinct id) from result where type='dataset'";
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# $datasrc_withpubs = "SELECT count(distinct rd.datasource) from result_datasources rd join result r on r.id=rd.id where r.type='publication'";
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$datasrc_withpubs = "SELECT count(distinct rd.datasource) from result_datasources rd ";
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232
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233
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234
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/*DATASETS */
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235
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236
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$datasetpubs= "select count(distinct r.id) from result r join result_results rr on rr.id=r.id join result rp on rp.id=rr.result where r.type='dataset' and rp.type='publication'" ;
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237
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238
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//# of datasets linked to projects
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$datasetproj="select count(distinct r.id) from result r join result_projects rp on rp.id=r.id join project p on p.id=rp.project where r.type='dataset' ";
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//# of publications linked to datasets
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243
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//$pubsdatasets ="select count(distinct r.id) from result r join result_results rr on rr.id=r.id join result rp on rp.id=rr.result where r.type='publication' and rp.type='dataset'";
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245
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246
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247
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$pubsdatasets ="select count(distinct rp.id) from result rp where rp.type='dataset'";
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/*EGI PAGE NUMS*/
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249
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250
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251
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$egivo="select count(distinct c.name) as field0 from result_concepts rc join concept c on c.id=rc.concept join category cat on cat.id=c.category where cat.id='egi::virtual'";
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252
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253
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$egiproj="select count(distinct c.name) as field0 from result_concepts rc join concept c on c.id=rc.concept join category cat on cat.id=c.category where cat.id='egi::projects' ";
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254
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255
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/*total of egi projects */
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256
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$egiprojtotal="select count (distinct c.name) as field0 from concept c join category cat on cat.id=c.category where cat.id='egi::projects'";
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257
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258
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259
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$egipubs= " select count( distinct rc.id) as field0 from result r,result_concepts rc, concept con, category cat where rc.id=r.id and con.id=rc.concept and con.category= cat.id and cat.context ='egi'";
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260
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261
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$egioa=" select count( distinct rc.id) as field0 from result r,result_concepts rc, concept con, category cat where rc.id=r.id and con.id=rc.concept and con.category= cat.id and cat.context ='egi' and r.bestlicense='Open Access'";
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262
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//$eginoa="select count(distinct r.id) as field0 from result r join result_concepts rc on r.id=rc.id join concept c on c.id=rc.concept where bestlicense='Closed Access'";
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263
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$egiemb=" select count( distinct rc.id) as field0 from result r,result_concepts rc, concept con, category cat where rc.id=r.id and con.id=rc.concept and con.category= cat.id and cat.context ='egi' and bestlicense='Embargo'";
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264
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$egires=" select count( distinct rc.id) as field0 from result r,result_concepts rc, concept con, category cat where rc.id=r.id and con.id=rc.concept and con.category= cat.id and cat.context ='egi' and bestlicense='Restricted'";
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265
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266
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/*FCT*/
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267
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268
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/*22: total number of FCT pubs*/
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269
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$qfctpubstotal = "SELECT count( distinct result.id) FROM result, project, result_projects where result_projects.project = project.id and project.funder='FCT' and result.result_projects = result_projects.id and result.type='publication'";
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270
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271
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/*23: FCT projects with pubs*/
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272
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$qfctprojpubs = "SELECT count(distinct project.id) FROM result, project, result_projects where result_projects.project = project.id and project.funder='FCT' and result.result_projects = result_projects.id and type='publication'"; /*24: total FCT projects*/
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273
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$qfctprojtotal = "SELECT count(id) FROM project WHERE funder ='FCT'"; /*25: FCT open access pubs*/
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274
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$qfctoapubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects= result_projects.id AND result_projects.project = project.id and funder ='FCT' and bestlicense='Open Access' and type='publication'"; /*26: FCT restricted pubs*/
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275
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$qfctrespubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects = result_projects.id AND result_projects.project = project.id and funder='FCT' and bestlicense='Restricted' and type='publication'";
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276
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/*27: FCT embargo pubs*/
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277
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$qfctembpubs = "SELECT count(distinct result_projects.id) FROM result, result_projects, project WHERE result.result_projects=result_projects.id AND result_projects.project = project.id and funder ='FCT' and bestlicense='Embargo' and type='publication'";
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278
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279
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280
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281
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$qres=' select count (distinct id) from result';
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282
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$qdtsrcdatarepo = "SELECT count(*) FROM datasource WHERE type = 'Data Repository'";
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283
|
/*total of egi projects */
|
|
284
|
$egiprojtotal="select count (distinct c.name) as field0 from concept c join category cat on cat.id=c.category where cat.id='egi::projects'";
|
|
285
|
|
|
286
|
|
|
287
|
|
|
288
|
|
|
289
|
|
|
290
|
|
|
291
|
|
|
292
|
|
|
293
|
|
|
294
|
|
|
295
|
|
|
296
|
/*1*/ $this->storeQuery('pubs', $qpubs);
|
|
297
|
/*2*/ $this->storeQuery('oapubs', $qoapubs);
|
|
298
|
/*3*/ $this->storeQuery('noapubs', $qnoapubs);
|
|
299
|
/*4*/ $this->storeQuery('fpubs', $qfpubs);
|
|
300
|
/*5*/ $this->storeQuery('proj', $qproj);
|
|
301
|
/*6*/ $this->storeQuery('datasrc', $qdatasrc);
|
|
302
|
/*7*/ $this->storeQuery('dtsrcpubs', $qdtsrcpubs);
|
|
303
|
/*8*/ $this->storeQuery('dtsrcpubreps', $qdtsrcpubreps);
|
|
304
|
/*9*/ $this->storeQuery('dtsrcoaj', $qdtsrcoaj);
|
|
305
|
/*10*/ $this->storeQuery('dtsrcpubaggr', $qdtsrcpubaggr);
|
|
306
|
/*11*/ $this->storeQuery('funders', $qfunders);
|
|
307
|
|
|
308
|
/*FP7*/
|
|
309
|
|
|
310
|
/*12*/ $this->storeQuery('fp7pubstotal', $qfp7pubstotal);
|
|
311
|
/*13*/ $this->storeQuery('fp7projpubs', $qfp7projpubs);
|
|
312
|
/*14*/ $this->storeQuery('fp7projtotal', $qfp7projtotal);
|
|
313
|
/*15*/ $this->storeQuery('fp7oapubs', $qfp7oapubs);
|
|
314
|
/*16*/ $this->storeQuery('fp7respubs', $qfp7respubs);
|
|
315
|
/*17*/ $this->storeQuery('fp7embpubs', $qfp7embpubs);
|
|
316
|
/*18*/ $this->storeQuery('sc39fp7pubstotal', $qsc39fp7pubstotal);
|
|
317
|
/*19*/ $this->storeQuery('sc39fp7projpubs', $qsc39fp7projpubs);
|
|
318
|
/*20*/ $this->storeQuery('sc39fp7projtotal', $qsc39fp7projtotal);
|
|
319
|
/*21*/ $this->storeQuery('sc39fp7oapubs', $qsc39fp7oapubs);
|
|
320
|
|
|
321
|
/*ERC*/
|
|
322
|
|
|
323
|
/*22*/ $this->storeQuery('ercpubstotal', $qercpubstotal);
|
|
324
|
/*23*/ $this->storeQuery('ercprojpubs', $qercprojpubs);
|
|
325
|
/*24*/ $this->storeQuery('ercprojtotal', $qercprojtotal);
|
|
326
|
/*25*/ $this->storeQuery('ercoapubs', $qercoapubs);
|
|
327
|
/*26*/ $this->storeQuery('ercrespubs', $qercrespubs);
|
|
328
|
/*27*/ $this->storeQuery('ercembpubs', $qercembpubs);
|
|
329
|
|
|
330
|
/*Wellcome Trust*/
|
|
331
|
|
|
332
|
/*28*/ $this->storeQuery('wtpubstotal', $qwtpubstotal);
|
|
333
|
/*29*/ $this->storeQuery('wtprojpubs', $qwtprojpubs);
|
|
334
|
/*30*/ $this->storeQuery('wtprojtotal', $qwtprojtotal);
|
|
335
|
/*31*/ $this->storeQuery('wtoapubs', $qwtoapubs);
|
|
336
|
/*32*/ $this->storeQuery('wtrespubs', $qwtrespubs);
|
|
337
|
/*33*/ $this->storeQuery('wtembpubs', $qwtembpubs);
|
|
338
|
/*34*/ $this->storeQuery('datasrc_withpubs', $datasrc_withpubs) ;
|
|
339
|
//todo commented those for duffy
|
|
340
|
/*35*/$this->storeQuery('org_withpubs', $org_withpubs);
|
|
341
|
/*36*/ $this->storeQuery('data_total', $data_total);
|
|
342
|
|
|
343
|
|
|
344
|
//FET NUMS
|
|
345
|
|
|
346
|
|
|
347
|
//FET NUMS
|
|
348
|
$this->storeQuery('fetpubs', $fetpubs);
|
|
349
|
$this->storeQuery('fetoapubs', $fetoapubs);
|
|
350
|
$this->storeQuery('fetrespubs', $fetrespubs);
|
|
351
|
$this->storeQuery('fetembpubs', $fetembpubs);
|
|
352
|
|
|
353
|
//DATASET NUMS
|
|
354
|
$this->storeQuery('datasetpubs', $datasetpubs);
|
|
355
|
$this->storeQuery('datasetproj', $datasetproj);
|
|
356
|
$this->storeQuery('pubsdatasets', $pubsdatasets);
|
|
357
|
|
|
358
|
/*EGI nums*/
|
|
359
|
$this->storeQuery('egipubs', $egipubs);
|
|
360
|
$this->storeQuery('egivo', $egivo);
|
|
361
|
$this->storeQuery('egiproj', $egiproj);
|
|
362
|
|
|
363
|
|
|
364
|
$this->storeQuery('egioa', $egioa);
|
|
365
|
$this->storeQuery('egiemb', $egiemb);
|
|
366
|
$this->storeQuery('egires', $egires);
|
|
367
|
|
|
368
|
//FCT NUMS
|
|
369
|
|
|
370
|
/*22*/ $this->storeQuery('fctpubstotal', $qfctpubstotal);
|
|
371
|
/*23*/ $this->storeQuery('fctprojpubs', $qfctprojpubs);
|
|
372
|
/*24*/ $this->storeQuery('fctprojtotal', $qfctprojtotal);
|
|
373
|
/*25*/ $this->storeQuery('fctoapubs', $qfctoapubs);
|
|
374
|
/*26*/ $this->storeQuery('fctrespubs', $qfctrespubs);
|
|
375
|
/*27*/ $this->storeQuery('fctembpubs', $qfctembpubs);
|
|
376
|
|
|
377
|
$this->storeQuery('dtsrcdatarepo', $qdtsrcdatarepo);
|
|
378
|
$this->storeQuery('res', $qres);
|
|
379
|
|
|
380
|
$this->StoreQuery('egiprojtotal',$egiprojtotal);
|
|
381
|
|
|
382
|
|
|
383
|
}
|
|
384
|
}
|
|
385
|
|
|
386
|
?>
|
|
387
|
|