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import {HostedByCollectedFrom, Journal, Project, RelationResult} from "../../utils/result-preview/result-preview";
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58288
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k.triantaf
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import {Reference} from "../../utils/entities/resultLandingInfo";
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50169
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argiro.kok
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export class ParsingFunctions {
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konstantin
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public open = 'assets/common-assets/unlock.svg';
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public closed = 'assets/common-assets/lock.svg';
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public unknown = 'assets/common-assets/question.svg';
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constructor() {
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}
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public ngOnDestroy() {
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}
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public parseFundingByProjects(fundedByProjects: Project[], relation: any,
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provenanceActionVocabulary: any): Project[] {
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if (fundedByProjects == undefined) {
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fundedByProjects = [];
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}
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let fundedByProject: Project = {
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"id": "", "acronym": "", "title": "",
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"funderShortname": "", "funderName": "",
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"funding": "", "code": "", "provenanceAction": "", "validated": false
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};
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if (relation.title != 'unidentified') {
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fundedByProject['id'] = relation['to'].content;
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fundedByProject['acronym'] = relation.acronym;
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fundedByProject['title'] = relation.title;
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fundedByProject['code'] = relation.code;
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61003
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konstantin
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if(relation.validated && relation.validated.date) {
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fundedByProject['validated'] = true;
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}
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if (provenanceActionVocabulary != null && relation.provenanceaction in provenanceActionVocabulary) {
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fundedByProject['provenanceAction'] = provenanceActionVocabulary[relation.provenanceaction];
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}
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} else {
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fundedByProject['id'] = "";
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fundedByProject['acronym'] = "";
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fundedByProject['title'] = "";
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fundedByProject['code'] = "";
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fundedByProject['provenanceAction'] = "";
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}
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if (relation.hasOwnProperty("funding")) {
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let funding: { "funderName": string, "funderShortname": string, "stream": string };
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funding = this.parseFundingTrees(relation.funding);
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if (funding.funderName) {
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fundedByProject['funderName'] = funding.funderName;
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}
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if (funding.funderShortname) {
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fundedByProject['funderShortname'] = funding.funderShortname;
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}
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if (funding.stream) {
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fundedByProject['funding'] = funding.stream;
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}
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}
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fundedByProjects.push(fundedByProject);
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return fundedByProjects;
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}
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// publication & research data : for fundedByProjects | project landing : for funding
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public parseFundingTrees(fundingTree: any): { "funderName": string, "funderShortname": string, "stream": string } {
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let funding: { "funderName": string, "funderShortname": string, "stream": string } = {
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"funderName": "",
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"funderShortname": "",
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"stream": ""
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};
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let length = Array.isArray(fundingTree) ? fundingTree.length : 1;
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for (let i = 0; i < length; i++) {
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let fundingData = Array.isArray(fundingTree) ? fundingTree[i] : fundingTree;
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if (fundingData.hasOwnProperty("funder")) {
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funding.funderShortname = fundingData['funder'].shortname;
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funding.funderName = fundingData['funder'].name;
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}
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funding.stream = this.addFundingLevel0(fundingData, funding.stream);
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funding.stream = this.addFundingLevel1(fundingData, funding.stream);
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funding.stream = this.addFundingLevel2(fundingData, funding.stream);
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}
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return funding;
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}
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addFundingLevel0(parent: string, fundingStream: string): string {
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if (parent.hasOwnProperty("funding_level_0")) {
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let level0 = parent['funding_level_0'];
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fundingStream += (fundingStream) ? " ; " : "";
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fundingStream += level0.name;
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}
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return fundingStream;
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}
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addFundingLevel1(parent: string, fundingStream: string): string {
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58275
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if (parent.hasOwnProperty("funding_level_1")) {
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let level1 = parent['funding_level_1'];
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// For projects' parsing
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if (level1.hasOwnProperty("parent")) {
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fundingStream = this.addFundingLevel0(level1.parent, fundingStream);
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}
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fundingStream += (fundingStream) ? " | " : "";
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fundingStream += level1.name;
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}
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return fundingStream;
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}
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addFundingLevel2(parent: string, fundingStream: string): string {
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58275
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if (parent.hasOwnProperty("funding_level_2")) {
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let level2 = parent['funding_level_2'];
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// For projects' parsing
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if (level2.hasOwnProperty("parent")) {
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fundingStream = this.addFundingLevel1(level2.parent, fundingStream);
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}
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fundingStream += (fundingStream) ? " | " : "";
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fundingStream += level2.name;
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}
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return fundingStream;
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}
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50169
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argiro.kok
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// publication & dataset landing : for collectedFrom
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parseCollectedFrom(collectedFrom: { "name": string, "id": string }[],
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_collectedFrom: any) {
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let length: number = collectedFrom.length;
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collectedFrom[length] = {"name": "", "id": ""};
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collectedFrom[length]['name'] = _collectedFrom.name;
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collectedFrom[length]['id'] = _collectedFrom.id;
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}
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50169
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// publication & dataset landing : for downloadFrom
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addPublisherToHostedBy_collectedFrom(hostedBy_collectedFrom: HostedByCollectedFrom[],
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publisher: string, journal: Journal,
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identifiers: Map<string, string[]>/*, title: { "name": string, "url": string, "accessMode": string}*/) {
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| 144 |
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if (publisher && identifiers != null && identifiers.has('doi')) {
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| 145 |
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if (hostedBy_collectedFrom == null) {
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hostedBy_collectedFrom = [];
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}
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let available: HostedByCollectedFrom = {
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downloadName: "",
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downloadUrl: null,
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collectedName: "",
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collectedId: "",
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accessMode: null,
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bestAccessMode: null,
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type: "",
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| 156 |
59038
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konstantin
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year: "",
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| 157 |
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icon: ""
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| 158 |
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};
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| 159 |
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| 160 |
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if (journal && journal.journal) {
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available.downloadName = publisher + "/ " + journal['journal'];
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} else {
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available.downloadName = publisher;
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}
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| 166 |
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let url = "https://dx.doi.org/" + identifiers.get("doi")[0];
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available.downloadUrl = new Array<string>();
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available.accessMode = new Array<string>();
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available.downloadUrl.push(url);
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available.icon = this.unknown;
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/*
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| 175 |
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if(title != undefined && title['url'] == "") {
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title['url'] = url;
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}
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| 178 |
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*/
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| 179 |
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hostedBy_collectedFrom.push(available);
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| 180 |
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}
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| 181 |
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return hostedBy_collectedFrom;
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}
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| 183 |
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| 184 |
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// publication & dataset landing : for downloadFrom
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58275
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parseDownloadFrom(downloadFrom: Map<string, { "url": string[], "accessMode": string[], "bestAccessMode": string }>, instance: any, url: string) {
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| 186 |
50169
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let key: string = instance['hostedby'].name;
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| 188 |
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if (key) {
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| 189 |
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this.addUrlAndAccessMode(downloadFrom, instance, key, url);
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}
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}
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| 192 |
58275
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| 193 |
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// publication & dataset landing : for publishedIn
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| 194 |
58275
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parsePublishedIn(publishedIn: Map<string, { "url": string[], "accessMode": string[], "bestAccessMode": string }>, instance: any, result: any, url: string, counter: number): number {
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| 195 |
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if (result != null && result.hasOwnProperty("source")) {
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| 196 |
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let key: string;
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| 197 |
58275
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if (Array.isArray(result.source)) {
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| 198 |
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if (counter == result.source.length) {
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| 199 |
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counter--;
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| 200 |
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}
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| 201 |
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key = result['source'][counter];
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| 202 |
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} else {
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| 203 |
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key = result['source'];
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| 204 |
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}
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| 205 |
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| 206 |
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if (key) {
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| 207 |
50169
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this.addUrlAndAccessMode(publishedIn, instance, key, url);
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| 208 |
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counter++;
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| 209 |
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}
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| 210 |
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}
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| 211 |
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return counter;
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| 212 |
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}
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| 213 |
58275
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| 214 |
50169
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argiro.kok
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// publication & dataset landing : for downloadFrom and publishedIn
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| 215 |
58275
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k.triantaf
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addUrlAndAccessMode(mapStructure: Map<string, { "url": string[], "accessMode": string[], "bestAccessMode": string }>, instance: any, key: string, url: string) {
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| 216 |
|
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if (!mapStructure.has(key)) {
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| 217 |
50169
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argiro.kok
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mapStructure.set(key, {"url": null, "accessMode": null, "bestAccessMode": null});
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| 218 |
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}
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| 219 |
58275
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| 220 |
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if (mapStructure.get(key)['url'] == null) {
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| 221 |
50169
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mapStructure.get(key)['url'] = new Array<string>();
|
| 222 |
|
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}
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| 223 |
58275
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| 224 |
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if (url) {
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| 225 |
50169
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mapStructure.get(key)['url'].push(url);
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| 226 |
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}
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| 227 |
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| 228 |
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if (mapStructure.get(key)['accessMode'] == null) {
|
| 229 |
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mapStructure.get(key)['accessMode'] = new Array<string>();
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| 230 |
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}
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| 231 |
58275
|
k.triantaf
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|
| 232 |
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if (instance.hasOwnProperty("accessright")) {
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| 233 |
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if (url) {
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| 234 |
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mapStructure.get(key)['accessMode'].push(instance['accessright'].classname);
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| 235 |
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}
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| 236 |
58275
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| 237 |
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if (this.changeBestAccessMode(mapStructure.get(key)['bestAccessMode'], instance['accessright'])) {
|
| 238 |
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mapStructure.get(key)['bestAccessMode'] = instance['accessright'].classname;
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| 239 |
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}
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| 240 |
58275
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} else if (url) {
|
| 241 |
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mapStructure.get(key)['accessMode'].push("");
|
| 242 |
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}
|
| 243 |
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}
|
| 244 |
58275
|
k.triantaf
|
|
| 245 |
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| 246 |
|
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parseHostedBy_collectedFrom(hostedBy_collectedFrom: HostedByCollectedFrom[],
|
| 247 |
52606
|
konstantin
|
instance: any, data: any, url: string, counter: number/*,
|
| 248 |
|
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title: { "name": string, "url": string, "accessMode": string}*/, accessMode: string): number {
|
| 249 |
58275
|
k.triantaf
|
let available: HostedByCollectedFrom = {
|
| 250 |
|
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"downloadName": "",
|
| 251 |
|
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"downloadUrl": null,
|
| 252 |
|
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"collectedName": "",
|
| 253 |
|
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"collectedId": "",
|
| 254 |
|
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"accessMode": null,
|
| 255 |
|
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"bestAccessMode": null,
|
| 256 |
|
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"type": "",
|
| 257 |
59038
|
konstantin
|
"year": "",
|
| 258 |
|
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"icon": ""
|
| 259 |
58275
|
k.triantaf
|
};
|
| 260 |
|
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|
| 261 |
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if (instance['hostedby'].name && instance['hostedby'].name != "other resources" && instance['hostedby'].name != "Unknown Repository") {
|
| 262 |
|
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available.downloadName = instance['hostedby'].name;
|
| 263 |
|
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} else {
|
| 264 |
59124
|
konstantin
|
// if (data != null && data.hasOwnProperty("source")) {
|
| 265 |
|
|
// let downloadName: string;
|
| 266 |
|
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// if (Array.isArray(data.source)) {
|
| 267 |
|
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//
|
| 268 |
|
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// if (counter == data.source.length) {
|
| 269 |
|
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// counter--;
|
| 270 |
|
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// }
|
| 271 |
|
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// downloadName = data['source'][counter];
|
| 272 |
|
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// } else {
|
| 273 |
|
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// downloadName = data['source'];
|
| 274 |
|
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// }
|
| 275 |
|
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// if (downloadName) {
|
| 276 |
|
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// counter++;
|
| 277 |
|
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// available.downloadName = downloadName;
|
| 278 |
|
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// }
|
| 279 |
|
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// }
|
| 280 |
|
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//
|
| 281 |
|
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// }
|
| 282 |
|
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//
|
| 283 |
|
|
// if(!available.downloadName) {
|
| 284 |
59038
|
konstantin
|
available.downloadName = url.substring(0, 30) + '...'; // substring(from, to);
|
| 285 |
|
|
}
|
| 286 |
|
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|
| 287 |
58275
|
k.triantaf
|
if (available.downloadName) {
|
| 288 |
|
|
if (instance.hasOwnProperty("collectedfrom")) {
|
| 289 |
|
|
available.collectedId = instance['collectedfrom'].id;
|
| 290 |
|
|
available.collectedName = instance['collectedfrom'].name;
|
| 291 |
|
|
}
|
| 292 |
|
|
|
| 293 |
|
|
if (instance.hasOwnProperty("instancetype") && instance['instancetype'].classname) {
|
| 294 |
|
|
available.type = instance['instancetype'].classname;
|
| 295 |
|
|
}
|
| 296 |
|
|
|
| 297 |
|
|
if (instance.hasOwnProperty("dateofacceptance")) {
|
| 298 |
|
|
var date: string = (instance.dateofacceptance) + ""; // transform to string in case it is an integer
|
| 299 |
|
|
available.year = (date && (date).indexOf('-') !== -1) ? date.split('-')[0] : date;
|
| 300 |
|
|
}
|
| 301 |
|
|
|
| 302 |
|
|
available.accessMode = new Array<string>();
|
| 303 |
|
|
available.downloadUrl = new Array<string>();
|
| 304 |
|
|
available['downloadUrl'].push(url);
|
| 305 |
|
|
if (instance.hasOwnProperty("accessright")) {
|
| 306 |
|
|
if (url) {
|
| 307 |
|
|
available['accessMode'].push(instance['accessright'].classname);
|
| 308 |
|
|
}
|
| 309 |
|
|
|
| 310 |
|
|
if (this.changeBestAccessMode(available.bestAccessMode, instance['accessright'])) {
|
| 311 |
|
|
available.bestAccessMode = instance['accessright'].classname;
|
| 312 |
|
|
/*
|
| 313 |
|
|
if(title != undefined) {
|
| 314 |
|
|
if(this.changeBestAccessMode(title['accessMode'], instance['accessright'])) {
|
| 315 |
|
|
title['accessMode'] = instance['accessright'].classid;
|
| 316 |
|
|
title['url'] = url;
|
| 317 |
|
|
}
|
| 318 |
|
|
}
|
| 319 |
|
|
*/
|
| 320 |
|
|
if (this.changeBestAccessMode(accessMode, instance['accessright'])) {
|
| 321 |
|
|
accessMode = instance['accessright'].classname;
|
| 322 |
|
|
}
|
| 323 |
|
|
}
|
| 324 |
|
|
/*
|
| 325 |
|
|
if(title != undefined) {
|
| 326 |
|
|
if(!title['url']) {
|
| 327 |
|
|
title['url'] = url;
|
| 328 |
|
|
}
|
| 329 |
|
|
}
|
| 330 |
|
|
*/
|
| 331 |
|
|
} else if (url) {
|
| 332 |
|
|
available['accessMode'].push("");
|
| 333 |
|
|
}
|
| 334 |
59038
|
konstantin
|
|
| 335 |
|
|
if (available.bestAccessMode) {
|
| 336 |
|
|
if (available.bestAccessMode.toLowerCase().indexOf('open') !== -1) {
|
| 337 |
|
|
available.icon = this.open;
|
| 338 |
|
|
} else if (available.bestAccessMode.toLowerCase().indexOf('not available') !== -1) {
|
| 339 |
|
|
available.icon = this.unknown;
|
| 340 |
|
|
} else {
|
| 341 |
|
|
available.icon = this.closed;
|
| 342 |
|
|
}
|
| 343 |
|
|
} else {
|
| 344 |
|
|
available.icon = this.unknown;
|
| 345 |
|
|
}
|
| 346 |
58275
|
k.triantaf
|
|
| 347 |
|
|
hostedBy_collectedFrom.push(available);
|
| 348 |
|
|
}
|
| 349 |
|
|
|
| 350 |
|
|
return counter;
|
| 351 |
50169
|
argiro.kok
|
}
|
| 352 |
58275
|
k.triantaf
|
|
| 353 |
50169
|
argiro.kok
|
// publication & dataset landing : for downloadFrom and publishedIn
|
| 354 |
|
|
changeBestAccessMode(currentAccessMode: string, accessMode: any): boolean {
|
| 355 |
58275
|
k.triantaf
|
if (!accessMode) {
|
| 356 |
50169
|
argiro.kok
|
return false;
|
| 357 |
|
|
}
|
| 358 |
|
|
accessMode = accessMode.classid;
|
| 359 |
58275
|
k.triantaf
|
|
| 360 |
50169
|
argiro.kok
|
switch (currentAccessMode) {
|
| 361 |
|
|
case null:
|
| 362 |
58275
|
k.triantaf
|
if (accessMode != "UNKNOWN") {
|
| 363 |
52606
|
konstantin
|
return true;
|
| 364 |
|
|
}
|
| 365 |
|
|
return false;
|
| 366 |
50169
|
argiro.kok
|
case "CLOSED":
|
| 367 |
58275
|
k.triantaf
|
if (accessMode == "OPEN" ||
|
| 368 |
|
|
accessMode == "OPEN SOURCE" ||
|
| 369 |
|
|
accessMode == "EMBARGO" ||
|
| 370 |
|
|
accessMode == "RESTRICTED") {
|
| 371 |
|
|
return true;
|
| 372 |
50169
|
argiro.kok
|
}
|
| 373 |
|
|
return false;
|
| 374 |
|
|
case "RESTRICTED":
|
| 375 |
58275
|
k.triantaf
|
if (accessMode == "OPEN" ||
|
| 376 |
|
|
accessMode == "OPEN SOURCE" ||
|
| 377 |
|
|
accessMode == "EMBARGO") {
|
| 378 |
|
|
return true;
|
| 379 |
50169
|
argiro.kok
|
}
|
| 380 |
|
|
return false;
|
| 381 |
|
|
case "EMBARGO":
|
| 382 |
58275
|
k.triantaf
|
if (accessMode == "OPEN" ||
|
| 383 |
|
|
accessMode == "OPEN SOURCE") {
|
| 384 |
50169
|
argiro.kok
|
return true;
|
| 385 |
52606
|
konstantin
|
}
|
| 386 |
|
|
return false;
|
| 387 |
|
|
case "OPEN SOURCE":
|
| 388 |
58275
|
k.triantaf
|
if (accessMode == "OPEN") {
|
| 389 |
52606
|
konstantin
|
return true;
|
| 390 |
|
|
}
|
| 391 |
|
|
return false;
|
| 392 |
50169
|
argiro.kok
|
}
|
| 393 |
|
|
return false;
|
| 394 |
|
|
}
|
| 395 |
58275
|
k.triantaf
|
|
| 396 |
52828
|
konstantin
|
// publication & dataset & software & orp landing : for relatedResearchResults
|
| 397 |
58275
|
k.triantaf
|
parseRelatedResearchResults(relatedResearchResults: RelationResult[], relation: any, provenanceAction: string):
|
| 398 |
|
|
RelationResult[] {
|
| 399 |
|
|
if (relatedResearchResults == undefined) {
|
| 400 |
|
|
relatedResearchResults = []
|
| 401 |
50169
|
argiro.kok
|
}
|
| 402 |
58275
|
k.triantaf
|
relatedResearchResults.push(this.parseRelatedOrSimilarResearchResult(relation, "trust", provenanceAction));
|
| 403 |
50169
|
argiro.kok
|
return relatedResearchResults;
|
| 404 |
|
|
}
|
| 405 |
58275
|
k.triantaf
|
|
| 406 |
57404
|
konstantin
|
// publication & dataset & software & orp landing : for supplementaryResearchResults
|
| 407 |
58275
|
k.triantaf
|
parseSupplementaryResearchResults(supplementaryResearchResults: RelationResult[], relation: any): RelationResult[] {
|
| 408 |
|
|
if (supplementaryResearchResults == undefined) {
|
| 409 |
|
|
supplementaryResearchResults = [];
|
| 410 |
57404
|
konstantin
|
}
|
| 411 |
|
|
supplementaryResearchResults.push(this.parseRelatedOrSimilarResearchResult(relation, "trust"));
|
| 412 |
|
|
return supplementaryResearchResults;
|
| 413 |
|
|
}
|
| 414 |
58275
|
k.triantaf
|
|
| 415 |
57404
|
konstantin
|
// publication & dataset & software & orp landing : for supplementedByResearchResults
|
| 416 |
58275
|
k.triantaf
|
parseSupplementedByResearchResults(supplementedByResearchResults: RelationResult[], relation: any): RelationResult[] {
|
| 417 |
|
|
if (supplementedByResearchResults == undefined) {
|
| 418 |
|
|
supplementedByResearchResults = [];
|
| 419 |
57404
|
konstantin
|
}
|
| 420 |
|
|
supplementedByResearchResults.push(this.parseRelatedOrSimilarResearchResult(relation, "trust"));
|
| 421 |
|
|
return supplementedByResearchResults;
|
| 422 |
|
|
}
|
| 423 |
58275
|
k.triantaf
|
|
| 424 |
52828
|
konstantin
|
// publication & dataset & software & orp landing : for similarResearchResults
|
| 425 |
58275
|
k.triantaf
|
parseSimilarResearchResults(similarResearchResults: RelationResult[], relation: any): RelationResult[] {
|
| 426 |
|
|
if (similarResearchResults == undefined) {
|
| 427 |
|
|
similarResearchResults = [];
|
| 428 |
50169
|
argiro.kok
|
}
|
| 429 |
52103
|
konstantin
|
similarResearchResults.push(this.parseRelatedOrSimilarResearchResult(relation, "similarity"));
|
| 430 |
50169
|
argiro.kok
|
return similarResearchResults;
|
| 431 |
|
|
}
|
| 432 |
58275
|
k.triantaf
|
|
| 433 |
52828
|
konstantin
|
// publication & dataset & software & orp landing : for relatedResearchResults and similarResearchResults
|
| 434 |
58275
|
k.triantaf
|
parseRelatedOrSimilarResearchResult(relation: any, percentageName: string, provenanceAction: string = null): RelationResult {
|
| 435 |
|
|
let researchResult: RelationResult = {
|
| 436 |
|
|
name: "",
|
| 437 |
|
|
id: "",
|
| 438 |
|
|
date: "",
|
| 439 |
|
|
percentage: null,
|
| 440 |
|
|
class: "",
|
| 441 |
|
|
provenanceAction: provenanceAction
|
| 442 |
|
|
};
|
| 443 |
58496
|
argiro.kok
|
if(relation['resulttype']) {
|
| 444 |
|
|
if (relation['resulttype'].classname == "publication") {
|
| 445 |
|
|
researchResult['class'] = "publication";
|
| 446 |
|
|
} else if (relation['resulttype'].classname == "dataset") {
|
| 447 |
|
|
researchResult['class'] = "dataset";
|
| 448 |
|
|
} else if (relation['resulttype'].classname == "software") {
|
| 449 |
|
|
researchResult['class'] = "software";
|
| 450 |
|
|
} else if (relation['resulttype'].classname == "other") {
|
| 451 |
|
|
researchResult['class'] = "other";
|
| 452 |
|
|
}
|
| 453 |
50169
|
argiro.kok
|
}
|
| 454 |
|
|
researchResult['id'] = relation['to'].content;
|
| 455 |
58496
|
argiro.kok
|
let titleName = Array.isArray(relation['title']) ? relation['title'][0].content : (relation['title']?relation['title'].content:null);
|
| 456 |
50169
|
argiro.kok
|
researchResult['name'] = titleName;
|
| 457 |
58496
|
argiro.kok
|
if(!researchResult['name']) {
|
| 458 |
|
|
researchResult['name'] = "[no title available]";
|
| 459 |
|
|
}
|
| 460 |
58275
|
k.triantaf
|
if (relation.hasOwnProperty("dateofacceptance")) {
|
| 461 |
|
|
var date: string = ((Array.isArray(relation.dateofacceptance)) ? (relation.dateofacceptance[0]) : (relation.dateofacceptance)) + ""; // transform to string in case it is an integer
|
| 462 |
|
|
researchResult['date'] = (date && (date).indexOf('-') !== -1) ? date.split('-')[0] : date;
|
| 463 |
52606
|
konstantin
|
}
|
| 464 |
50169
|
argiro.kok
|
//researchResult['date'] = relation.dateofacceptance.substring(0,4);;
|
| 465 |
58275
|
k.triantaf
|
researchResult['percentage'] = Math.round(relation[percentageName] * 100);
|
| 466 |
50169
|
argiro.kok
|
return researchResult;
|
| 467 |
|
|
}
|
| 468 |
58275
|
k.triantaf
|
|
| 469 |
|
|
sortByPercentage(results: RelationResult[]): RelationResult[] {
|
| 470 |
|
|
if (results) {
|
| 471 |
|
|
return results.sort(function (a, b) {
|
| 472 |
|
|
return b["percentage"] - a["percentage"]
|
| 473 |
|
|
});
|
| 474 |
52115
|
konstantin
|
}
|
| 475 |
|
|
return results;
|
| 476 |
|
|
}
|
| 477 |
58275
|
k.triantaf
|
|
| 478 |
50169
|
argiro.kok
|
// publication & dataset landing : for identifiers
|
| 479 |
|
|
parseIdentifiers(pid: any): Map<string, string[]> {
|
| 480 |
|
|
let identifiers = new Map<string, string[]>();
|
| 481 |
58275
|
k.triantaf
|
|
| 482 |
59087
|
konstantin
|
if (pid.hasOwnProperty("classid") && pid['classid'] != "") {
|
| 483 |
|
|
if (pid.classid == "doi" || pid.classid == "pmc" || pid.classid == "handle" || pid.classid == "pmid") {
|
| 484 |
|
|
if (!identifiers.has(pid.classid)) {
|
| 485 |
|
|
identifiers.set(pid.classid, new Array<string>());
|
| 486 |
50169
|
argiro.kok
|
}
|
| 487 |
58275
|
k.triantaf
|
|
| 488 |
59087
|
konstantin
|
identifiers.get(pid.classid).push(pid.content);
|
| 489 |
50169
|
argiro.kok
|
}
|
| 490 |
|
|
} else {
|
| 491 |
58275
|
k.triantaf
|
for (let i = 0; i < pid.length; i++) {
|
| 492 |
59087
|
konstantin
|
if (pid[i].classid == "doi" || pid[i].classid == "pmc" || pid[i].classid == "handle" || pid[i].classid == "pmid") {
|
| 493 |
|
|
if (!identifiers.has(pid[i].classid)) {
|
| 494 |
|
|
identifiers.set(pid[i].classid, new Array<string>());
|
| 495 |
50169
|
argiro.kok
|
}
|
| 496 |
59087
|
konstantin
|
identifiers.get(pid[i].classid).push(pid[i].content);
|
| 497 |
50169
|
argiro.kok
|
}
|
| 498 |
|
|
}
|
| 499 |
|
|
}
|
| 500 |
|
|
return identifiers;
|
| 501 |
|
|
}
|
| 502 |
58275
|
k.triantaf
|
|
| 503 |
50169
|
argiro.kok
|
// publication & dataset landing : for subjects and otherSubjects and classifiedSubjects
|
| 504 |
|
|
parseAllSubjects(_subjects: any): [string[], Map<string, string[]>, Map<string, string[]>] {
|
| 505 |
|
|
let subjects: string[];
|
| 506 |
|
|
let otherSubjects: Map<string, string[]>;
|
| 507 |
|
|
let classifiedSubjects: Map<string, string[]>;
|
| 508 |
58275
|
k.triantaf
|
|
| 509 |
50169
|
argiro.kok
|
let subject;
|
| 510 |
|
|
let length = Array.isArray(_subjects) ? _subjects.length : 1;
|
| 511 |
58275
|
k.triantaf
|
|
| 512 |
|
|
for (let i = 0; i < length; i++) {
|
| 513 |
50169
|
argiro.kok
|
subject = Array.isArray(_subjects) ? _subjects[i] : _subjects;
|
| 514 |
58275
|
k.triantaf
|
if (subject.classid != "") {
|
| 515 |
|
|
if (subject.inferred && subject.inferred == true) {
|
| 516 |
|
|
if (classifiedSubjects == undefined) {
|
| 517 |
50169
|
argiro.kok
|
classifiedSubjects = new Map<string, string[]>();
|
| 518 |
|
|
}
|
| 519 |
58275
|
k.triantaf
|
|
| 520 |
|
|
if (!classifiedSubjects.has(subject.classname)) {
|
| 521 |
50169
|
argiro.kok
|
classifiedSubjects.set(subject.classname, new Array<string>());
|
| 522 |
|
|
}
|
| 523 |
58275
|
k.triantaf
|
|
| 524 |
50169
|
argiro.kok
|
classifiedSubjects.get(subject.classname).push(subject.content);
|
| 525 |
|
|
} else {
|
| 526 |
58275
|
k.triantaf
|
if (subject.classid == "keyword") {
|
| 527 |
|
|
if (subjects == undefined) {
|
| 528 |
50169
|
argiro.kok
|
subjects = new Array<string>();
|
| 529 |
|
|
}
|
| 530 |
58275
|
k.triantaf
|
|
| 531 |
50169
|
argiro.kok
|
subjects.push(subject.content);
|
| 532 |
|
|
} else {
|
| 533 |
58275
|
k.triantaf
|
if (otherSubjects == undefined) {
|
| 534 |
50169
|
argiro.kok
|
otherSubjects = new Map<string, string[]>();
|
| 535 |
|
|
}
|
| 536 |
58275
|
k.triantaf
|
|
| 537 |
|
|
if (!otherSubjects.has(subject.classname)) {
|
| 538 |
50169
|
argiro.kok
|
otherSubjects.set(subject.classname, new Array<string>());
|
| 539 |
|
|
}
|
| 540 |
|
|
otherSubjects.get(subject.classname).push(subject.content);
|
| 541 |
|
|
}
|
| 542 |
|
|
}
|
| 543 |
|
|
}
|
| 544 |
|
|
}
|
| 545 |
|
|
return [subjects, otherSubjects, classifiedSubjects];
|
| 546 |
|
|
}
|
| 547 |
58275
|
k.triantaf
|
|
| 548 |
|
|
parseContexts(_contexts: any): {
|
| 549 |
60780
|
konstantin
|
"labelContext": string, "idContext": string,
|
| 550 |
|
|
"labelCategory": string, "idCategory": string,
|
| 551 |
61002
|
argiro.kok
|
"labelConcept": string, "idConcept": string
|
| 552 |
58275
|
k.triantaf
|
}[] {
|
| 553 |
|
|
let contexts = new Array<{
|
| 554 |
60780
|
konstantin
|
"labelContext": string, "idContext": string,
|
| 555 |
|
|
"labelCategory": string, "idCategory": string,
|
| 556 |
61002
|
argiro.kok
|
"labelConcept": string, "idConcept": string
|
| 557 |
58275
|
k.triantaf
|
}>();
|
| 558 |
|
|
|
| 559 |
50169
|
argiro.kok
|
let position = 0;
|
| 560 |
|
|
let labels = "";
|
| 561 |
|
|
let context;
|
| 562 |
|
|
let length = Array.isArray(_contexts) ? _contexts.length : 1;
|
| 563 |
58275
|
k.triantaf
|
for (let i = 0; i < length; i++) {
|
| 564 |
50169
|
argiro.kok
|
context = Array.isArray(_contexts) ? _contexts[i] : _contexts;
|
| 565 |
58275
|
k.triantaf
|
|
| 566 |
|
|
if (context.hasOwnProperty("type") && (context['type'] == "community" || context['type'] == "ri")) {
|
| 567 |
|
|
if (context.hasOwnProperty("category")) {
|
| 568 |
56937
|
konstantin
|
let category;
|
| 569 |
|
|
let length2 = Array.isArray(context['category']) ? context['category'].length : 1;
|
| 570 |
|
|
for (let z = 0; z < length2; z++) {
|
| 571 |
|
|
category = Array.isArray(context['category']) ? context['category'][z] : context['category'];
|
| 572 |
|
|
if (category.hasOwnProperty("concept")) {
|
| 573 |
|
|
let categoryConcept;
|
| 574 |
|
|
let length1 = Array.isArray(category['concept']) ? category['concept'].length : 1;
|
| 575 |
|
|
for (let j = 0; j < length1; j++) {
|
| 576 |
|
|
categoryConcept = Array.isArray(category['concept']) ? category['concept'][j] : category['concept'];
|
| 577 |
58275
|
k.triantaf
|
|
| 578 |
60780
|
konstantin
|
contexts[position] = {"labelContext": "", "idContext": "",
|
| 579 |
|
|
"labelCategory": "", "idCategory": "",
|
| 580 |
61002
|
argiro.kok
|
"labelConcept": "", "idConcept": ""};
|
| 581 |
56937
|
konstantin
|
contexts[position]['labelContext'] = context.label;
|
| 582 |
60780
|
konstantin
|
contexts[position]['idContext'] = context.id;
|
| 583 |
56937
|
konstantin
|
contexts[position]['labelCategory'] = category.label;
|
| 584 |
60780
|
konstantin
|
contexts[position]['idCategory'] = category.id;
|
| 585 |
56937
|
konstantin
|
contexts[position]['labelConcept'] = categoryConcept.label;
|
| 586 |
60780
|
konstantin
|
contexts[position]['idConcept'] = categoryConcept.id;
|
| 587 |
|
|
|
| 588 |
56937
|
konstantin
|
position++;
|
| 589 |
|
|
}
|
| 590 |
|
|
} else {
|
| 591 |
60780
|
konstantin
|
contexts[position] = {"labelContext": "", "idContext": "",
|
| 592 |
|
|
"labelCategory": "", "idCategory": "",
|
| 593 |
61002
|
argiro.kok
|
"labelConcept": "", "idConcept": ""};
|
| 594 |
50169
|
argiro.kok
|
contexts[position]['labelContext'] = context.label;
|
| 595 |
60780
|
konstantin
|
contexts[position]['idContext'] = context.id;
|
| 596 |
56937
|
konstantin
|
contexts[position]['labelCategory'] = category.label;
|
| 597 |
60780
|
konstantin
|
contexts[position]['idCategory'] = category.id;
|
| 598 |
56937
|
konstantin
|
contexts[position]['labelConcept'] = null;
|
| 599 |
60780
|
konstantin
|
contexts[position]['idConcept'] = null;
|
| 600 |
50169
|
argiro.kok
|
position++;
|
| 601 |
|
|
}
|
| 602 |
|
|
}
|
| 603 |
57082
|
konstantin
|
} else {
|
| 604 |
60780
|
konstantin
|
contexts[position] = {"labelContext": "", "idContext": "",
|
| 605 |
|
|
"labelCategory": "", "idCategory": "",
|
| 606 |
61002
|
argiro.kok
|
"labelConcept": "", "idConcept": ""};
|
| 607 |
57082
|
konstantin
|
contexts[position]['labelContext'] = context.label;
|
| 608 |
60780
|
konstantin
|
contexts[position]['idContext'] = context.id;
|
| 609 |
57082
|
konstantin
|
contexts[position]['labelCategory'] = null;
|
| 610 |
60780
|
konstantin
|
contexts[position]['idCategory'] = null;
|
| 611 |
57082
|
konstantin
|
contexts[position]['labelConcept'] = null;
|
| 612 |
60780
|
konstantin
|
contexts[position]['idConcept'] = null;
|
| 613 |
57082
|
konstantin
|
contexts[position]['new'] = false;
|
| 614 |
|
|
position++;
|
| 615 |
50169
|
argiro.kok
|
}
|
| 616 |
|
|
}
|
| 617 |
|
|
}
|
| 618 |
|
|
return contexts;
|
| 619 |
|
|
}
|
| 620 |
60783
|
argiro.kok
|
public static getEnermapsConceptId(contexts: any): string{
|
| 621 |
60814
|
argiro.kok
|
// let enermapsconcepts = contexts.filter(c=> {return c.idCategory == "enermaps::selection" && c.idConcept});
|
| 622 |
|
|
// return enermapsconcepts && enermapsconcepts.length > 0?enermapsconcepts[0].idConcept.split("enermaps::selection::")[1]:null;
|
| 623 |
|
|
return "hotmaps_heat_tot_curr_density"
|
| 624 |
60783
|
argiro.kok
|
}
|
| 625 |
50169
|
argiro.kok
|
parseTypes(types: string[], uniqueTypes: Set<string>, instance: any) {
|
| 626 |
59223
|
argiro.kok
|
if (instance && instance.hasOwnProperty("instancetype") && instance['instancetype'].classname) {
|
| 627 |
58275
|
k.triantaf
|
if (!uniqueTypes.has(instance['instancetype'].classname)) {
|
| 628 |
50169
|
argiro.kok
|
types.push(instance['instancetype'].classname);
|
| 629 |
|
|
uniqueTypes.add(instance['instancetype'].classname);
|
| 630 |
|
|
}
|
| 631 |
|
|
}
|
| 632 |
|
|
}
|
| 633 |
58275
|
k.triantaf
|
|
| 634 |
50728
|
konstantin
|
parseLanguages(_languages: any) {
|
| 635 |
|
|
var languages = new Array<string>();
|
| 636 |
60780
|
konstantin
|
|
| 637 |
58275
|
k.triantaf
|
if (!Array.isArray(_languages)) {
|
| 638 |
|
|
if (_languages.classname != "Undetermined" && _languages.classname) {
|
| 639 |
50728
|
konstantin
|
languages.push(_languages.classname);
|
| 640 |
|
|
}
|
| 641 |
|
|
} else {
|
| 642 |
58275
|
k.triantaf
|
for (let i = 0; i < _languages.length; i++) {
|
| 643 |
|
|
if (_languages[i].classname != "Undetermined" && _languages[i].classname) {
|
| 644 |
50728
|
konstantin
|
languages.push(_languages[i].classname);
|
| 645 |
|
|
}
|
| 646 |
|
|
}
|
| 647 |
|
|
}
|
| 648 |
|
|
return languages;
|
| 649 |
|
|
}
|
| 650 |
58275
|
k.triantaf
|
|
| 651 |
52606
|
konstantin
|
parseCountries(_countries: any) {
|
| 652 |
|
|
var countries = new Array<string>();
|
| 653 |
58275
|
k.triantaf
|
|
| 654 |
|
|
if (!Array.isArray(_countries)) {
|
| 655 |
|
|
if (_countries.classname != "Undetermined" && _countries.classname) {
|
| 656 |
52606
|
konstantin
|
countries.push(_countries.classname);
|
| 657 |
|
|
}
|
| 658 |
|
|
} else {
|
| 659 |
58275
|
k.triantaf
|
for (let i = 0; i < countries.length; i++) {
|
| 660 |
|
|
if (_countries[i].classname != "Undetermined" && _countries[i].classname) {
|
| 661 |
52606
|
konstantin
|
countries.push(_countries[i].classname);
|
| 662 |
|
|
}
|
| 663 |
|
|
}
|
| 664 |
|
|
}
|
| 665 |
|
|
return countries;
|
| 666 |
|
|
}
|
| 667 |
58275
|
k.triantaf
|
|
| 668 |
52606
|
konstantin
|
parseProgrammingLanguages(_pLanguages) {
|
| 669 |
|
|
var pLanguages = new Array<string>();
|
| 670 |
58275
|
k.triantaf
|
|
| 671 |
|
|
if (!Array.isArray(_pLanguages)) {
|
| 672 |
|
|
if (_pLanguages.classname != "Undetermined" && _pLanguages.classname) {
|
| 673 |
52606
|
konstantin
|
pLanguages.push(_pLanguages.classname);
|
| 674 |
|
|
}
|
| 675 |
|
|
} else {
|
| 676 |
58275
|
k.triantaf
|
for (let i = 0; i < _pLanguages.length; i++) {
|
| 677 |
|
|
if (_pLanguages[i].classname != "Undetermined" && _pLanguages[i].classname) {
|
| 678 |
52606
|
konstantin
|
pLanguages.push(_pLanguages[i].classname);
|
| 679 |
|
|
}
|
| 680 |
|
|
}
|
| 681 |
|
|
}
|
| 682 |
|
|
return pLanguages;
|
| 683 |
|
|
}
|
| 684 |
58275
|
k.triantaf
|
|
| 685 |
58288
|
k.triantaf
|
parseReferences(citations: any): Reference[] {
|
| 686 |
|
|
let references: Reference[] = [];
|
| 687 |
|
|
citations = Array.isArray(citations) ? citations : [citations];
|
| 688 |
|
|
citations.forEach(citation => {
|
| 689 |
|
|
let reference: Reference = {name: null, ids: []};
|
| 690 |
|
|
if(citation.rawText) {
|
| 691 |
|
|
reference.name = citation.rawText;
|
| 692 |
54905
|
konstantin
|
}
|
| 693 |
58288
|
k.triantaf
|
if(citation.id) {
|
| 694 |
|
|
let ids: any[] = Array.isArray(citation.id) ? citation.id : [citation.id];
|
| 695 |
|
|
ids.forEach(id => {
|
| 696 |
|
|
reference.ids.push({
|
| 697 |
|
|
type: id.type,
|
| 698 |
|
|
value: id.value,
|
| 699 |
|
|
trust: id.confidenceLevel
|
| 700 |
|
|
});
|
| 701 |
|
|
});
|
| 702 |
|
|
}
|
| 703 |
|
|
references[citation.position - 1] = reference;
|
| 704 |
|
|
});
|
| 705 |
54905
|
konstantin
|
return references;
|
| 706 |
|
|
}
|
| 707 |
59293
|
argiro.kok
|
static parseRelCanonicalId(record, type){
|
| 708 |
|
|
try{
|
| 709 |
|
|
if(record["result"]["metadata"]["oaf:entity"][("oaf:"+type)]["children"] && record["result"]["metadata"]["oaf:entity"][("oaf:"+type)]["children"][type]){
|
| 710 |
|
|
for(let child of record["result"]["metadata"]["oaf:entity"][("oaf:"+type)]["children"][type]){
|
| 711 |
|
|
return child["objidentifier"];
|
| 712 |
|
|
}
|
| 713 |
|
|
}
|
| 714 |
|
|
}catch(e){
|
| 715 |
|
|
// console.error(e);
|
| 716 |
|
|
}
|
| 717 |
|
|
return record["result"]["header"]["dri:objIdentifier"];
|
| 718 |
|
|
|
| 719 |
|
|
}
|
| 720 |
50169
|
argiro.kok
|
}
|