Revision 49865
Added by Argiro Kokogiannaki over 6 years ago
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/ClaimValidation.java | ||
|---|---|---|
| 23 | 23 |
|
| 24 | 24 |
*/ |
| 25 | 25 |
public boolean validateClaim(Claim claim){
|
| 26 |
logger.info("Validating...");
|
|
| 27 | 26 |
boolean isValid=true; |
| 28 | 27 |
try {
|
| 29 | 28 |
out = new PrintWriter(new BufferedWriter(new FileWriter(pathToSaveReport+"/validationFile.txt", true))); |
| ... | ... | |
| 198 | 197 |
} |
| 199 | 198 |
private boolean validateByType(OpenaireEntity entity,String type , String claimId ){
|
| 200 | 199 |
//TODO add more types (e.g. patends) when they are available |
| 201 |
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)){
|
|
| 200 |
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.SOFTWARE)){
|
|
| 202 | 201 |
return validateResult((Result)entity,claimId); |
| 203 | 202 |
} else if(type.equals(ClaimUtils.CONTEXT)){
|
| 204 | 203 |
return validateContext((Context)entity,claimId); |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/Migration.java | ||
|---|---|---|
| 4 | 4 |
import eu.dnetlib.data.claims.migration.handler.*; |
| 5 | 5 |
import eu.dnetlib.data.claimsDemo.ClaimUtils; |
| 6 | 6 |
import eu.dnetlib.data.claimsDemo.SQLStoreException; |
| 7 |
import org.apache.log4j.BasicConfigurator; |
|
| 8 |
import org.apache.log4j.Level; |
|
| 7 | 9 |
import org.apache.log4j.Logger; |
| 8 | 10 |
import org.springframework.context.ApplicationContext; |
| 9 | 11 |
import org.springframework.context.support.ClassPathXmlApplicationContext; |
| ... | ... | |
| 100 | 102 |
return claims; |
| 101 | 103 |
|
| 102 | 104 |
} |
| 105 |
public void createAndSaveRelationsClaims(boolean save) throws Exception, SQLStoreException {
|
|
| 106 |
/*for stats*/ |
|
| 107 |
List<Claim> claimsOp= new ArrayList<Claim>(); |
|
| 108 |
List<Claim> claimsCr= new ArrayList<Claim>(); |
|
| 109 |
List<Claim> claimsDat= new ArrayList<Claim>(); |
|
| 110 |
List<Claim> claimsOrc= new ArrayList<Claim>(); |
|
| 111 |
Integer targetOp=0; |
|
| 112 |
Integer targetCr=0; |
|
| 113 |
Integer targetDat=0; |
|
| 114 |
Integer targetOrc=0; |
|
| 115 |
Integer sourceRes=0; |
|
| 116 |
Integer sourceOp=0; |
|
| 117 |
Integer sourceCr=0; |
|
| 118 |
Integer sourceDat=0; |
|
| 119 |
Integer sourceOrc=0; |
|
| 120 |
Integer projects=0; |
|
| 121 |
Integer contexts=0; |
|
| 122 |
Integer totalClaims=0; |
|
| 123 |
|
|
| 124 |
|
|
| 125 |
List<Relation> relations = relationHandler.fetchAllRelations(); |
|
| 126 |
List<Claim> claims = new ArrayList<Claim>(); |
|
| 127 |
logger.info("Relation size: "+relations.size());
|
|
| 128 |
for (Relation relation : relations) {
|
|
| 129 |
try {
|
|
| 130 |
Claim claim = new Claim(); |
|
| 131 |
|
|
| 132 |
claim.setUserMail(relation.getClaimedBy()); |
|
| 133 |
claim.setDate(relation.getClaimDate()); |
|
| 134 |
claim.setId(relation.getClaimId()); |
|
| 135 |
logger.info("Claim id:" + claim.getId());
|
|
| 136 |
OpenaireEntity source = null; |
|
| 137 |
//first work with the Source |
|
| 138 |
if (relation.getSourceType().equals(ClaimUtils.PROJECT)) {
|
|
| 139 |
source = buildProject(relation.getSourceId(), relation.getClaimId()); |
|
| 140 |
claim.setSourceType(ClaimUtils.PROJECT); |
|
| 141 |
} else if (relation.getSourceType().equals(ClaimUtils.CONTEXT)) {
|
|
| 142 |
Context context = dmfContextHandler.fetchContextByIdFromDmf(relation.getSourceId()); |
|
| 143 |
source = context; |
|
| 144 |
claim.setSourceType(ClaimUtils.CONTEXT); |
|
| 145 |
} else if (relation.getSourceType().equals(ClaimUtils.DATASET) || relation.getSourceType().equals(ClaimUtils.PUBLICATION)) {
|
|
| 146 |
Result result = buildResult(relation.getDmf(), relation.getCollectedFrom(), relation.getSourceId(), relation.getClaimId()); |
|
| 147 |
source = result; |
|
| 148 |
claim.setSourceType(result.getResultType()); |
|
| 149 |
} |
|
| 150 |
|
|
| 151 |
claim.setSource(source); |
|
| 152 |
|
|
| 153 |
Result target = null; |
|
| 154 |
if (relation.getTargetType().equals(ClaimUtils.DATASET) || relation.getTargetType().equals(ClaimUtils.PUBLICATION)) {
|
|
| 155 |
target = buildResult(relation.getDmf(), relation.getCollectedFrom(), relation.getTargetId(), relation.getClaimId()); |
|
| 156 |
|
|
| 157 |
} |
|
| 158 |
if (target != null) {
|
|
| 159 |
claim.setTarget(target); |
|
| 160 |
claim.setTargetType(target.getResultType()); |
|
| 161 |
} |
|
| 162 |
|
|
| 163 |
if (claimValidation.validateClaim(claim)) { // is valid
|
|
| 164 |
if(save) {
|
|
| 165 |
claim = claimHandler.exportMedatataForClaim(claim); |
|
| 166 |
claimHandler.saveClaim(claim); |
|
| 167 |
} |
|
| 168 |
/*for stats*/ |
|
| 169 |
if(((Result)claim.getTarget()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_CROSSREF)){
|
|
| 170 |
targetCr++; |
|
| 171 |
}else if(((Result)claim.getTarget()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_DATACITE)){
|
|
| 172 |
targetDat++; |
|
| 173 |
}else if(((Result)claim.getTarget()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_ORCID)){
|
|
| 174 |
targetOrc++; |
|
| 175 |
}else {
|
|
| 176 |
targetOp++; |
|
| 177 |
} |
|
| 178 |
if(claim.getSourceType().equals(ClaimUtils.PUBLICATION)||claim.getSourceType().equals(ClaimUtils.DATASET)){
|
|
| 179 |
sourceRes++; |
|
| 180 |
if(((Result)claim.getSource()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_CROSSREF)){
|
|
| 181 |
sourceCr++; |
|
| 182 |
}else if(((Result)claim.getSource()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_DATACITE)){
|
|
| 183 |
sourceDat++; |
|
| 184 |
}else if(((Result)claim.getSource()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_ORCID)){
|
|
| 185 |
sourceOrc++; |
|
| 186 |
}else {
|
|
| 187 |
sourceOp++; |
|
| 188 |
} |
|
| 189 |
}else if(claim.getSourceType().equals(ClaimUtils.PROJECT)) {
|
|
| 190 |
projects++; |
|
| 191 |
}else if(claim.getSourceType().equals(ClaimUtils.CONTEXT)){
|
|
| 192 |
contexts++; |
|
| 193 |
} |
|
| 194 |
|
|
| 195 |
} |
|
| 196 |
}catch (Exception e){
|
|
| 197 |
e.printStackTrace(); |
|
| 198 |
logger.error("Exception: "+e.getMessage());
|
|
| 199 |
|
|
| 200 |
} |
|
| 201 |
} |
|
| 202 |
|
|
| 203 |
/*for stats*/ |
|
| 204 |
System.out.println("\n\nTargets:\n\nCrossref : "+targetCr+ " DataCite :"+targetDat+" Orcid : "+targetOrc+" OpenAire : "+targetOp);
|
|
| 205 |
System.out.println("\n\nSources:\n\nAll : "+sourceRes+" Crossref : "+sourceCr+ " DataCite :"+sourceDat+" Orcid : "+sourceOrc+" OpenAire : "+sourceOp);
|
|
| 206 |
System.out.println("\n\nTotalClaims: "+totalClaims+" Projects: "+projects+ " Contexts :"+contexts);
|
|
| 207 |
|
|
| 208 |
|
|
| 209 |
} |
|
| 103 | 210 |
public List<Claim> createContextRelationClaims() throws Exception, SQLStoreException {
|
| 104 | 211 |
|
| 105 | 212 |
|
| ... | ... | |
| 132 | 239 |
|
| 133 | 240 |
|
| 134 | 241 |
} |
| 242 |
public void createAndSaveContextRelationClaims(Boolean save) throws Exception, SQLStoreException {
|
|
| 243 |
/*for stats*/ |
|
| 244 |
List<Claim> claimsOp= new ArrayList<Claim>(); |
|
| 245 |
List<Claim> claimsCr= new ArrayList<Claim>(); |
|
| 246 |
List<Claim> claimsDat= new ArrayList<Claim>(); |
|
| 247 |
List<Claim> claimsOrc= new ArrayList<Claim>(); |
|
| 248 |
Integer targetOp=0; |
|
| 249 |
Integer targetCr=0; |
|
| 250 |
Integer targetDat=0; |
|
| 251 |
Integer targetOrc=0; |
|
| 252 |
Integer sourceRes=0; |
|
| 253 |
Integer sourceOp=0; |
|
| 254 |
Integer sourceCr=0; |
|
| 255 |
Integer sourceDat=0; |
|
| 256 |
Integer sourceOrc=0; |
|
| 257 |
Integer projects=0; |
|
| 258 |
Integer contexts=0; |
|
| 259 |
Integer totalClaims=0; |
|
| 135 | 260 |
|
| 261 |
List<ContextRelation> relations = contextRelationHandler.fetchAllConceptRelations(); |
|
| 262 |
// List<Claim> claims = new ArrayList<Claim>(); |
|
| 263 |
for (ContextRelation relation : relations) {
|
|
| 264 |
|
|
| 265 |
Claim claim= new Claim(); |
|
| 266 |
claim.setId(relation.getClaimId()); |
|
| 267 |
claim.setUserMail(relation.getClaimedBy()); |
|
| 268 |
claim.setDate(relation.getClaimDate()); |
|
| 269 |
logger.info("Claim id:" + claim.getId());
|
|
| 270 |
|
|
| 271 |
//first work with the Source |
|
| 272 |
Context context = dmfContextHandler.extractContextFromDMF(relation.getContextDmf()); |
|
| 273 |
claim.setSourceType(ClaimUtils.CONTEXT); |
|
| 274 |
claim.setSource(context); |
|
| 275 |
|
|
| 276 |
Result target = buildResult(relation.getResultDmf(), relation.getCollectedFrom(), relation.getResultId(), relation.getClaimId()); |
|
| 277 |
if( target != null){
|
|
| 278 |
claim.setTarget(target); |
|
| 279 |
claim.setTargetType(target.getResultType()); |
|
| 280 |
} |
|
| 281 |
if(claimValidation.validateClaim(claim)){ // is valid
|
|
| 282 |
if(save){
|
|
| 283 |
claim = claimHandler.exportMedatataForClaim(claim); |
|
| 284 |
claimHandler.saveClaim(claim); |
|
| 285 |
} |
|
| 286 |
|
|
| 287 |
/*for stats*/ |
|
| 288 |
if(((Result)claim.getTarget()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_CROSSREF)){
|
|
| 289 |
targetCr++; |
|
| 290 |
}else if(((Result)claim.getTarget()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_DATACITE)){
|
|
| 291 |
targetDat++; |
|
| 292 |
}else if(((Result)claim.getTarget()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_ORCID)){
|
|
| 293 |
targetOrc++; |
|
| 294 |
}else {
|
|
| 295 |
targetOp++; |
|
| 296 |
} |
|
| 297 |
if(claim.getSourceType().equals(ClaimUtils.PUBLICATION)||claim.getSourceType().equals(ClaimUtils.DATASET)){
|
|
| 298 |
sourceRes++; |
|
| 299 |
if(((Result)claim.getSource()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_CROSSREF)){
|
|
| 300 |
sourceCr++; |
|
| 301 |
}else if(((Result)claim.getSource()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_DATACITE)){
|
|
| 302 |
sourceDat++; |
|
| 303 |
}else if(((Result)claim.getSource()).getCollectedFrom().equals(ClaimUtils.COLLECTED_FROM_ORCID)){
|
|
| 304 |
sourceOrc++; |
|
| 305 |
}else {
|
|
| 306 |
sourceOp++; |
|
| 307 |
} |
|
| 308 |
}else if(claim.getSourceType().equals(ClaimUtils.PROJECT)) {
|
|
| 309 |
projects++; |
|
| 310 |
}else if(claim.getSourceType().equals(ClaimUtils.CONTEXT)){
|
|
| 311 |
contexts++; |
|
| 312 |
} |
|
| 313 |
} |
|
| 314 |
|
|
| 315 |
|
|
| 316 |
} |
|
| 317 |
|
|
| 318 |
/*for stats*/ |
|
| 319 |
System.out.println("\n\nTargets:\n\nCrossref : "+targetCr+ " DataCite :"+targetDat+" Orcid : "+targetOrc+" OpenAire : "+targetOp);
|
|
| 320 |
System.out.println("\n\nSources:\n\nAll : "+sourceRes+" Crossref : "+sourceCr+ " DataCite :"+sourceDat+" Orcid : "+sourceOrc+" OpenAire : "+sourceOp);
|
|
| 321 |
System.out.println("\n\nTotalClaims: "+totalClaims+" Projects: "+projects+ " Contexts :"+contexts);
|
|
| 322 |
|
|
| 323 |
} |
|
| 324 |
|
|
| 136 | 325 |
/** |
| 137 | 326 |
*Returns a project from Openaire. |
| 138 | 327 |
* In case the project id has a "welcometrust" prefix changes it to "wt__________", before search for it in the index. |
| ... | ... | |
| 147 | 336 |
if(projectId != null && projectId.contains("welcometrust")){
|
| 148 | 337 |
id=projectId.replace("welcometrust","wt__________");
|
| 149 | 338 |
} |
| 150 |
Project project = projectHandler.fetchProjectByID(id); |
|
| 339 |
Project project = projectHandler.fetchProjectByID(id, false);
|
|
| 151 | 340 |
if (project == null) {
|
| 341 |
project = projectHandler.fetchProjectByID(id, true); |
|
| 342 |
} |
|
| 343 |
if (project == null) {
|
|
| 152 | 344 |
try{
|
| 153 |
PrintWriter out = new PrintWriter(new BufferedWriter(new FileWriter("missing_projects.txt", true)));
|
|
| 345 |
PrintWriter out = new PrintWriter(new BufferedWriter(new FileWriter(claimValidation.getPathToSaveReport()+"missing_projects.txt", true)));
|
|
| 154 | 346 |
Date date= new java.util.Date(); |
| 155 | 347 |
out.println(new Timestamp(date.getTime())+" ProjectId: "+id+ " ClaimId: "+claimId); |
| 156 | 348 |
out.close(); |
| ... | ... | |
| 257 | 449 |
public Result buildOpenaireResult(String resultId, String claimId ){
|
| 258 | 450 |
|
| 259 | 451 |
Result result = null; |
| 260 |
|
|
| 261 | 452 |
try {
|
| 262 |
result = indexResultHandler.fetchResultById(resultId);
|
|
| 453 |
result = indexResultHandler.fetchPublicationById(resultId, false);
|
|
| 263 | 454 |
} catch (Exception e) {
|
| 264 | 455 |
logger.error("Error fetching result from Openaire",e);
|
| 456 |
System.out.println("Error fetching result from Openaire");
|
|
| 265 | 457 |
} |
| 266 | 458 |
|
| 267 | 459 |
//If it is not found in the index |
| 268 | 460 |
if (result == null) {
|
| 269 | 461 |
//give a second chance as dedup |
| 462 |
// try {
|
|
| 463 |
// result = indexResultHandler.fetchDedupResultById(resultId); |
|
| 464 |
// } catch (Exception e) {
|
|
| 465 |
// logger.error("Error fetching dedup Result",e);
|
|
| 466 |
// } |
|
| 467 |
//give a second chance in production |
|
| 270 | 468 |
try {
|
| 271 |
result = indexResultHandler.fetchDedupResultById(resultId);
|
|
| 469 |
result = indexResultHandler.fetchPublicationById(resultId, true);
|
|
| 272 | 470 |
} catch (Exception e) {
|
| 273 |
logger.error("Error fetching dedup Result",e);
|
|
| 471 |
logger.error("Error fetching result from Openaire",e);
|
|
| 472 |
System.out.println("Error fetching result from Openaire");
|
|
| 274 | 473 |
} |
| 474 |
if (result == null) {
|
|
| 475 |
try {
|
|
| 476 |
result = indexResultHandler.fetchDatasetById(resultId, false); |
|
| 477 |
} catch (Exception e) {
|
|
| 478 |
logger.error("Error fetching result from Openaire",e);
|
|
| 479 |
System.out.println("Error fetching result from Openaire");
|
|
| 480 |
} |
|
| 481 |
} |
|
| 482 |
if (result == null) {
|
|
| 483 |
try {
|
|
| 484 |
result = indexResultHandler.fetchDatasetById(resultId, true); |
|
| 485 |
} catch (Exception e) {
|
|
| 486 |
logger.error("Error fetching result from Openaire",e);
|
|
| 487 |
System.out.println("Error fetching result from Openaire");
|
|
| 488 |
} |
|
| 489 |
} |
|
| 490 |
if (result == null) {
|
|
| 491 |
try {
|
|
| 492 |
result = indexResultHandler.fetchDedupById(resultId, false); |
|
| 493 |
} catch (Exception e) {
|
|
| 494 |
logger.error("Error fetching result from Openaire",e);
|
|
| 495 |
System.out.println("Error fetching result from Openaire");
|
|
| 496 |
} |
|
| 497 |
} |
|
| 498 |
// if (result == null) {
|
|
| 499 |
// try {
|
|
| 500 |
// result = indexResultHandler.fetchDedupById(resultId, true); |
|
| 501 |
// } catch (Exception e) {
|
|
| 502 |
// logger.error("Error fetching result from Openaire",e);
|
|
| 503 |
// System.out.println("Error fetching result from Openaire");
|
|
| 504 |
// } |
|
| 505 |
// } |
|
| 275 | 506 |
if (result != null) {
|
| 276 | 507 |
try {
|
| 277 | 508 |
PrintWriter out = new PrintWriter(new BufferedWriter(new FileWriter(claimValidation.getPathToSaveReport()+"dedup_results_found.txt", true))); |
| ... | ... | |
| 346 | 577 |
|
| 347 | 578 |
|
| 348 | 579 |
public static void main(String[] args) throws IOException {
|
| 349 |
|
|
| 580 |
BasicConfigurator.configure(); |
|
| 581 |
logger.setLevel(Level.DEBUG); |
|
| 350 | 582 |
Migration migration = new Migration(); |
| 351 | 583 |
try {
|
| 352 |
migration.claimHandler.getQueryGenerator().setMigrationTable("claims_view");
|
|
| 353 |
List<Claim> claims = null; |
|
| 354 |
// claims = migration.createContextRelationClaims(); |
|
| 355 |
claims = migration.createRelationsClaims(); |
|
| 584 |
// migration.claimHandler.getQueryGenerator().setMigrationTable("claims_view");
|
|
| 585 |
// migration.createAndSaveRelationsClaims(true); |
|
| 586 |
// migration.createAndSaveContextRelationClaims(true); |
|
| 356 | 587 |
|
| 357 |
migration.printStatistics(claims); |
|
| 358 |
migration.saveClaims(claims); |
|
| 588 |
migration.claimHandler.getQueryGenerator().setMigrationTable("export_last_claims");
|
|
| 589 |
migration.createAndSaveRelationsClaims(true); |
|
| 590 |
migration.createAndSaveContextRelationClaims(true); |
|
| 359 | 591 |
|
| 592 |
|
|
| 360 | 593 |
} catch (Exception e) {
|
| 361 | 594 |
logger.error("Error in migration",e);
|
| 362 | 595 |
} catch (SQLStoreException e) {
|
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/entity/Result.java | ||
|---|---|---|
| 216 | 216 |
",\n recordPath='" + recordPath + '\'' + |
| 217 | 217 |
",\n recordFormat='" + recordFormat + '\'' + |
| 218 | 218 |
",\n resultType='" + resultType + '\'' + |
| 219 |
",\n authors='" + authors + '\'' + |
|
| 219 | 220 |
'}'; |
| 220 | 221 |
} |
| 221 | 222 |
//method to ask from API of search to get the metadataRecord |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/parser/OafParser.java | ||
|---|---|---|
| 59 | 59 |
NodeList nl = (NodeList) xpath.compile("/response/header/total/text()").evaluate(document, XPathConstants.NODESET);
|
| 60 | 60 |
if (nl.getLength() > 0) {
|
| 61 | 61 |
size= nl.item(0).getNodeValue(); |
| 62 |
}else{
|
|
| 63 |
nl = (NodeList) xpath.compile("//objIdentifier/text()").evaluate(document, XPathConstants.NODESET);
|
|
| 64 |
if (nl.getLength() > 0) {
|
|
| 65 |
// result.setOpenaireId(nl.item(0).getNodeValue()); |
|
| 66 |
size="1"; |
|
| 67 |
} |
|
| 62 | 68 |
} |
| 63 | 69 |
if(size!=null && Integer.parseInt(size)>0){
|
| 64 | 70 |
result = new Result(); |
| ... | ... | |
| 74 | 80 |
if (nl.getLength() > 0) {
|
| 75 | 81 |
result.setBestLicense(nl.item(0).getNodeValue()); |
| 76 | 82 |
} |
| 83 |
nl = (NodeList) xpath.compile("//bestaccessright/@classid").evaluate(document, XPathConstants.NODESET);
|
|
| 84 |
if (nl.getLength() > 0) {
|
|
| 85 |
result.setBestLicense(nl.item(0).getNodeValue()); |
|
| 86 |
} |
|
| 77 | 87 |
nl = (NodeList) xpath.compile("//embargoenddate/text()").evaluate(document, XPathConstants.NODESET);
|
| 78 | 88 |
if (nl.getLength() > 0) {
|
| 79 | 89 |
result.setEmbargoEndDate(nl.item(0).getNodeValue()); |
| ... | ... | |
| 141 | 151 |
nl.item(0).getParentNode().removeChild(nl.item(0)); |
| 142 | 152 |
} |
| 143 | 153 |
|
| 144 |
nl = (NodeList) xpath.compile("//rels/rel/to[@class='hasAuthor']").evaluate(document, XPathConstants.NODESET);
|
|
| 154 |
nl = (NodeList) xpath.compile("//rel[@class='hasAuthor']").evaluate(document, XPathConstants.NODESET);
|
|
| 155 |
System.out.println("Author length"+nl.getLength());
|
|
| 145 | 156 |
if (nl.getLength() > 0) {
|
| 146 | 157 |
for (int i = 0; i < nl.getLength(); i++) {
|
| 147 | 158 |
String ranking = ((Element)(nl.item(i).getParentNode())).getElementsByTagName("ranking").item(0).getTextContent();
|
| ... | ... | |
| 150 | 161 |
} |
| 151 | 162 |
|
| 152 | 163 |
} |
| 164 |
nl = (NodeList) xpath.compile("//creator/text()").evaluate(document, XPathConstants.NODESET);
|
|
| 165 |
System.out.println("Creator length"+nl.getLength());
|
|
| 166 |
if (nl.getLength() > 0) {
|
|
| 167 |
for (int i = 0; i < nl.getLength(); i++) {
|
|
| 168 |
String ranking = ((Element)(nl.item(i).getParentNode())).getAttribute("rank");
|
|
| 169 |
String fullname = (((Element)(nl.item(i).getParentNode())).getTextContent().replace(",", " "));
|
|
| 170 |
result.getAuthors().put(ranking,fullname); |
|
| 171 |
} |
|
| 153 | 172 |
|
| 173 |
} |
|
| 174 |
|
|
| 154 | 175 |
DOMSource domSource = new DOMSource(document); |
| 155 | 176 |
StringWriter writer = new StringWriter(); |
| 156 | 177 |
StreamResult streamResult = new StreamResult(writer); |
| ... | ... | |
| 248 | 269 |
return project; |
| 249 | 270 |
|
| 250 | 271 |
} |
| 272 |
public static Result oaf2Software(String oaf) throws ParserConfigurationException, IOException, SAXException, XPathExpressionException, TransformerException {
|
|
| 273 |
Result result = null; |
|
| 274 |
DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance(); |
|
| 275 |
DocumentBuilder dBuilder = dbFactory.newDocumentBuilder(); |
|
| 276 |
InputSource is = new InputSource(new StringReader(oaf)); |
|
| 277 |
Document document= dBuilder.parse(is); |
|
| 278 |
XPathFactory xPathfactory= XPathFactory.newInstance(); |
|
| 279 |
XPath xpath = xPathfactory.newXPath(); |
|
| 251 | 280 |
|
| 281 |
String size = null; |
|
| 282 |
NodeList nl = (NodeList) xpath.compile("/response/header/total/text()").evaluate(document, XPathConstants.NODESET);
|
|
| 283 |
if (nl.getLength() > 0) {
|
|
| 284 |
size= nl.item(0).getNodeValue(); |
|
| 285 |
} |
|
| 286 |
System.out.println("size:"+size);
|
|
| 287 |
if(size!=null && Integer.parseInt(size)>0){
|
|
| 288 |
result = new Result(); |
|
| 289 |
nl = (NodeList) xpath.compile("//field[@name = \"resultId\"]/@value").evaluate(document, XPathConstants.NODESET);
|
|
| 290 |
if (nl.getLength() > 0) {
|
|
| 291 |
result.setOpenaireId(nl.item(0).getNodeValue()); |
|
| 292 |
} |
|
| 293 |
nl = (NodeList) xpath.compile("//field[@name = \"resulttypeid\"]/@value").evaluate(document, XPathConstants.NODESET);
|
|
| 294 |
if (nl.getLength() > 0) {
|
|
| 295 |
result.setResultType(nl.item(0).getNodeValue()); |
|
| 296 |
} |
|
| 297 |
nl = (NodeList) xpath.compile("//field[@name = \"bestaccessright\"]/@value").evaluate(document, XPathConstants.NODESET);
|
|
| 298 |
if (nl.getLength() > 0) {
|
|
| 299 |
result.setBestLicense(nl.item(0).getNodeValue()); |
|
| 300 |
} |
|
| 301 |
nl = (NodeList) xpath.compile("//field[@name = \"embargoenddate\"]/@value").evaluate(document, XPathConstants.NODESET);
|
|
| 302 |
if (nl.getLength() > 0) {
|
|
| 303 |
result.setEmbargoEndDate(nl.item(0).getNodeValue()); |
|
| 304 |
} |
|
| 305 |
nl = (NodeList) xpath.compile("//field[@name = \"title\"]/@value").evaluate(document, XPathConstants.NODESET);
|
|
| 306 |
if (nl.getLength() > 0) {
|
|
| 307 |
result.setTitle(nl.item(0).getNodeValue()); |
|
| 308 |
} |
|
| 309 |
// |
|
| 310 |
nl = (NodeList) xpath.compile("//field[@name = \"pid\"]").evaluate(document, XPathConstants.NODESET);
|
|
| 311 |
System.out.println("size: pid"+nl.getLength());
|
|
| 312 |
if (nl.getLength() > 0) {
|
|
| 313 |
for (int i = 0; i < nl.getLength(); i++) {
|
|
| 314 |
NodeList list = (NodeList) xpath.compile("./field[@name = \"classid\"]/@value").evaluate(nl.item(i), XPathConstants.NODESET);
|
|
| 315 |
System.out.println("size: classid"+list.getLength());
|
|
| 316 |
|
|
| 317 |
if (list.getLength() > 0 && list.item(0).getNodeValue() !=null ) {
|
|
| 318 |
|
|
| 319 |
if (list.item(0).getNodeValue().equals("doi")) {
|
|
| 320 |
list = (NodeList) xpath.compile("./field[@name = \"value\"]/@value").evaluate(nl.item(i), XPathConstants.NODESET);
|
|
| 321 |
result.setDoi(list.item(0).getNodeValue()); |
|
| 322 |
result.setExternalUrl("http://dx.doi.org/" + result.getDoi());
|
|
| 323 |
|
|
| 324 |
|
|
| 325 |
} else if (list.item(0).getNodeValue().equals("pmc")) {
|
|
| 326 |
list = (NodeList) xpath.compile("./field[@name = \"value\"]/@value").evaluate(nl.item(i), XPathConstants.NODESET);
|
|
| 327 |
result.setDoi(list.item(0).getNodeValue()); |
|
| 328 |
result.setExternalUrl("http://dx.doi.org/" + result.getDoi());
|
|
| 329 |
|
|
| 330 |
|
|
| 331 |
}else if (list.item(0).getNodeValue().equals("orcidworkid")) {
|
|
| 332 |
list = (NodeList) xpath.compile("./field[@name = \"value\"]/@value").evaluate(nl.item(i), XPathConstants.NODESET);
|
|
| 333 |
result.setDoi(list.item(0).getNodeValue()); |
|
| 334 |
result.setExternalUrl("http://dx.doi.org/" + result.getDoi());
|
|
| 335 |
|
|
| 336 |
|
|
| 337 |
}else if (list.item(0).getNodeValue().equals("oai")) {
|
|
| 338 |
list = (NodeList) xpath.compile("./field[@name = \"value\"]/@value").evaluate(nl.item(i), XPathConstants.NODESET);
|
|
| 339 |
result.setDoi(list.item(0).getNodeValue()); |
|
| 340 |
result.setExternalUrl("http://dx.doi.org/" + result.getDoi());
|
|
| 341 |
|
|
| 342 |
|
|
| 343 |
} |
|
| 344 |
} |
|
| 345 |
} |
|
| 346 |
} |
|
| 347 |
nl = (NodeList) xpath.compile("//rels/rel/to[@class='hasAuthor']").evaluate(document, XPathConstants.NODESET);
|
|
| 348 |
if (nl.getLength() > 0) {
|
|
| 349 |
for (int i = 0; i < nl.getLength(); i++) {
|
|
| 350 |
String ranking = ((Element)(nl.item(i).getParentNode())).getElementsByTagName("ranking").item(0).getTextContent();
|
|
| 351 |
String fullname = (((Element)(nl.item(i).getParentNode())).getElementsByTagName("fullname").item(0).getTextContent().replace(",", " "));
|
|
| 352 |
result.getAuthors().put(ranking,fullname); |
|
| 353 |
} |
|
| 354 |
|
|
| 355 |
} |
|
| 356 |
if(result.getExternalUrl()==null){
|
|
| 357 |
// nl = (NodeList) xpath.compile("//webresource/url/text()").evaluate(document, XPathConstants.NODESET);
|
|
| 358 |
// if (nl.getLength() > 0) {
|
|
| 359 |
// result.setExternalUrl(nl.item(0).getNodeValue()); |
|
| 360 |
// } |
|
| 361 |
nl = (NodeList) xpath.compile("//children/instance/licence[@classid='OPEN']").evaluate(document, XPathConstants.NODESET);
|
|
| 362 |
if (nl.getLength() > 0) {
|
|
| 363 |
NodeList list = (NodeList) xpath.compile("./webresource/url/text()").evaluate(nl.item(0).getParentNode(), XPathConstants.NODESET);
|
|
| 364 |
if (list.getLength() > 0) {
|
|
| 365 |
result.setExternalUrl(list.item(0).getNodeValue()); |
|
| 366 |
} |
|
| 367 |
}else{
|
|
| 368 |
nl = (NodeList) xpath.compile("//children/instance/licence[@classid='EMBARGO']").evaluate(document, XPathConstants.NODESET);
|
|
| 369 |
if (nl.getLength() > 0) {
|
|
| 370 |
NodeList list = (NodeList) xpath.compile("./webresource/url/text()").evaluate(nl.item(0).getParentNode(), XPathConstants.NODESET);
|
|
| 371 |
if (list.getLength() > 0) {
|
|
| 372 |
result.setExternalUrl(list.item(0).getNodeValue()); |
|
| 373 |
} |
|
| 374 |
}else{
|
|
| 375 |
nl = (NodeList) xpath.compile("//children/instance/licence[@classid='CLOSED']").evaluate(document, XPathConstants.NODESET);
|
|
| 376 |
if (nl.getLength() > 0) {
|
|
| 377 |
NodeList list = (NodeList) xpath.compile("./webresource/url/text()").evaluate(nl.item(0).getParentNode(), XPathConstants.NODESET);
|
|
| 378 |
if (list.getLength() > 0) {
|
|
| 379 |
result.setExternalUrl(list.item(0).getNodeValue()); |
|
| 380 |
} |
|
| 381 |
} |
|
| 382 |
} |
|
| 383 |
} |
|
| 384 |
} |
|
| 385 |
|
|
| 386 |
|
|
| 387 |
nl = (NodeList) xpath.compile("//response/header").evaluate(document, XPathConstants.NODESET);
|
|
| 388 |
if(nl.getLength()>0){
|
|
| 389 |
nl.item(0).getParentNode().removeChild(nl.item(0)); |
|
| 390 |
} |
|
| 391 |
|
|
| 392 |
|
|
| 393 |
|
|
| 394 |
DOMSource domSource = new DOMSource(document); |
|
| 395 |
StringWriter writer = new StringWriter(); |
|
| 396 |
StreamResult streamResult = new StreamResult(writer); |
|
| 397 |
TransformerFactory tf = TransformerFactory.newInstance(); |
|
| 398 |
Transformer transformer = tf.newTransformer(); |
|
| 399 |
transformer.transform(domSource, streamResult); |
|
| 400 |
result.setMetadataRecord(writer.toString()); |
|
| 401 |
result.setCollectedFrom(ClaimUtils.COLLECTED_FROM_OPENAIRE); |
|
| 402 |
result.setRecordFormat(ClaimUtils.FORMAT_XML); |
|
| 403 |
// result.setFound(true); |
|
| 404 |
|
|
| 405 |
} |
|
| 406 |
return result; |
|
| 407 |
} |
|
| 408 |
|
|
| 409 |
|
|
| 252 | 410 |
} |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/parser/ExternalRecordParser.java | ||
|---|---|---|
| 71 | 71 |
} |
| 72 | 72 |
} |
| 73 | 73 |
} |
| 74 |
System.out.println(item.getDOI()); |
|
| 74 |
// System.out.println(item.getDOI());
|
|
| 75 | 75 |
result.setDoi(item.getDOI()); |
| 76 | 76 |
result.setOpenaireId(createOpenaireId(item.getDOI())); |
| 77 | 77 |
result.setExternalUrl(item.getUrl()); |
| ... | ... | |
| 272 | 272 |
return result; |
| 273 | 273 |
} |
| 274 | 274 |
public static String createOpenaireId(String id){
|
| 275 |
System.out.println("createOpenaireId from id:" +id);
|
|
| 275 |
// System.out.println("createOpenaireId from id:" +id);
|
|
| 276 | 276 |
if(id==null){
|
| 277 | 277 |
return null; |
| 278 | 278 |
} |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/handler/DirectIndexHandler.java | ||
|---|---|---|
| 79 | 79 |
response.append(inputLine); |
| 80 | 80 |
} |
| 81 | 81 |
in.close(); |
| 82 |
if(response.toString().equals("true")){
|
|
| 83 |
return true; |
|
| 84 |
}else{
|
|
| 82 |
if(responseCode != 200){
|
|
| 85 | 83 |
logger.error("An error occured. Record isn't saved in the Index.\n"+response.toString());
|
| 86 | 84 |
return false; |
| 85 |
}else{
|
|
| 86 |
return true; |
|
| 87 | 87 |
} |
| 88 | 88 |
} catch (IOException e) {
|
| 89 | 89 |
logger.error("An error occured while trying to feed object" ,e);
|
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/handler/ClaimHandler.java | ||
|---|---|---|
| 29 | 29 |
DMFContextHandler dmfContextHandler = null; |
| 30 | 30 |
ProjectHandler projectHandler = null; |
| 31 | 31 |
ClaimValidation claimValidation = null; |
| 32 |
Boolean useProductionIndex = false; |
|
| 32 | 33 |
|
| 33 | 34 |
private static final Logger logger = Logger.getLogger(ClaimHandler.class); |
| 34 | 35 |
|
| ... | ... | |
| 174 | 175 |
* @throws Exception |
| 175 | 176 |
*/ |
| 176 | 177 |
private OpenaireEntity buildOpenaireEntity(String id, String type, String collectedFrom, String accessRights, String embargoDate) throws Exception {
|
| 178 |
logger.info("HEEEEREEE");
|
|
| 177 | 179 |
if(type==null){
|
| 178 | 180 |
return null; |
| 179 | 181 |
} |
| 180 | 182 |
else if(type.equals(ClaimUtils.CONTEXT)){
|
| 181 | 183 |
return DMFContextHandler.fetchContextById(id); |
| 182 | 184 |
}else if (type.equals(ClaimUtils.PROJECT)){
|
| 183 |
Project project = projectHandler.fetchProjectByID(id); |
|
| 185 |
Project project = projectHandler.fetchProjectByID(id, false);
|
|
| 184 | 186 |
if(project == null){
|
| 187 |
project = projectHandler.fetchProjectByID(id, true); |
|
| 188 |
} |
|
| 189 |
if(project == null){
|
|
| 185 | 190 |
logger.error("Project with id:"+id + " couldn't be fetched.");
|
| 186 | 191 |
} |
| 187 | 192 |
|
| 188 | 193 |
return project; |
| 189 |
}else if (type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)){
|
|
| 194 |
}else if (type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.SOFTWARE) ){
|
|
| 190 | 195 |
ExternalRecordHandler externalRecordHandler = new ExternalRecordHandler(); |
| 191 | 196 |
if(collectedFrom == null){
|
| 192 | 197 |
return null; |
| ... | ... | |
| 220 | 225 |
return result; |
| 221 | 226 |
}else if (collectedFrom.equals(ClaimUtils.OPENAIRE)){
|
| 222 | 227 |
IndexResultHandler indexResultHandler = new IndexResultHandler(); |
| 223 |
Result result = indexResultHandler.fetchResultById(id); |
|
| 228 |
Result result = null; |
|
| 229 |
if(type.equals(ClaimUtils.PUBLICATION)){
|
|
| 230 |
result = indexResultHandler.fetchPublicationById(id,useProductionIndex); |
|
| 231 |
|
|
| 232 |
}else if(type.equals(ClaimUtils.DATASET)){
|
|
| 233 |
result = indexResultHandler.fetchDatasetById(id,useProductionIndex); |
|
| 234 |
}else if(type.equals(ClaimUtils.SOFTWARE)){
|
|
| 235 |
result = indexResultHandler.fetchSoftwareById(id,useProductionIndex); |
|
| 236 |
} |
|
| 224 | 237 |
if(result == null){
|
| 225 |
logger.error("Record with id:"+id + " couldn't be fetched from openaire.");
|
|
| 238 |
logger.error("Record with id:"+id + " and type " + type + " couldn't be fetched from openaire.");
|
|
| 226 | 239 |
} |
| 227 | 240 |
return result; |
| 228 | 241 |
} |
| ... | ... | |
| 346 | 359 |
public void setClaimValidation(ClaimValidation claimValidation) {
|
| 347 | 360 |
this.claimValidation = claimValidation; |
| 348 | 361 |
} |
| 362 |
|
|
| 363 |
public Boolean getUseProductionIndex() {
|
|
| 364 |
return useProductionIndex; |
|
| 365 |
} |
|
| 366 |
|
|
| 367 |
public void setUseProductionIndex(Boolean useProductionIndex) {
|
|
| 368 |
this.useProductionIndex = useProductionIndex; |
|
| 369 |
} |
|
| 349 | 370 |
} |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/handler/DMFResultHandler.java | ||
|---|---|---|
| 1 | 1 |
package eu.dnetlib.data.claims.migration.handler; |
| 2 | 2 |
|
| 3 |
import eu.dnetlib.data.claims.migration.ClaimValidation; |
|
| 3 | 4 |
import eu.dnetlib.data.claims.migration.entity.Result; |
| 4 | 5 |
import eu.dnetlib.data.claims.migration.parser.DMFParser; |
| 5 | 6 |
import eu.dnetlib.data.claimsDemo.*; |
| ... | ... | |
| 157 | 158 |
public void setDmfParser(DMFParser dmfParser) {
|
| 158 | 159 |
this.dmfParser = dmfParser; |
| 159 | 160 |
} |
| 161 |
|
|
| 160 | 162 |
} |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/handler/IndexResultHandler.java | ||
|---|---|---|
| 11 | 11 |
|
| 12 | 12 |
SearchUtils searchUtils; |
| 13 | 13 |
|
| 14 |
private String fetchPublicationResult(String id) throws Exception {
|
|
| 15 |
return searchUtils.fetchPublicationXmlFromIndex(id); |
|
| 14 |
private String fetchPublicationResult(String id, boolean production) throws Exception {
|
|
| 15 |
return searchUtils.fetchPublicationXmlFromIndex(id, production);
|
|
| 16 | 16 |
} |
| 17 |
|
|
| 18 |
private String fetchDatasetResult(String id) throws Exception {
|
|
| 19 |
return searchUtils.fetchDatasetXmlFromIndex(id); |
|
| 17 |
private String fetchSoftwareResult(String id, boolean production) throws Exception {
|
|
| 18 |
return searchUtils.fetchSoftwareXmlFromIndex(id, production); |
|
| 20 | 19 |
} |
| 21 |
private String fetchDedupPublicationResult(String id) throws Exception {
|
|
| 22 |
return searchUtils.fetchDedupPublicationXmlFromIndex(id); |
|
| 23 |
} |
|
| 24 | 20 |
|
| 25 |
private String fetchDedupDatasetResult(String id) throws Exception {
|
|
| 26 |
return searchUtils.fetchDedupDatasetXmlFromIndex(id);
|
|
| 21 |
private String fetchDatasetResult(String id, boolean production) throws Exception {
|
|
| 22 |
return searchUtils.fetchDatasetXmlFromIndex(id, production);
|
|
| 27 | 23 |
} |
| 24 |
// private String fetchDedupPublicationResult(String id) throws Exception {
|
|
| 25 |
// return searchUtils.fetchDedupPublicationXmlFromIndex(id); |
|
| 26 |
// } |
|
| 27 |
// |
|
| 28 |
// private String fetchDedupDatasetResult(String id) throws Exception {
|
|
| 29 |
// return searchUtils.fetchDedupDatasetXmlFromIndex(id); |
|
| 30 |
// } |
|
| 28 | 31 |
/** |
| 29 | 32 |
*Searches for both publications and datasets |
| 30 | 33 |
* @param id |
| 31 | 34 |
* @return Result or null |
| 32 | 35 |
* @throws Exception |
| 33 | 36 |
*/ |
| 34 |
public Result fetchResultById(String id) throws Exception {
|
|
| 37 |
public Result fetchResultById(String id, boolean production) throws Exception {
|
|
| 35 | 38 |
|
| 36 |
String oaf = fetchPublicationResult(id); |
|
| 39 |
String oaf = fetchPublicationResult(id, production);
|
|
| 37 | 40 |
|
| 38 | 41 |
if (oaf == null) {
|
| 39 |
oaf = fetchDatasetResult(id); |
|
| 42 |
oaf = fetchDatasetResult(id, production);
|
|
| 40 | 43 |
} |
| 41 | 44 |
|
| 42 | 45 |
if (oaf == null) {
|
| ... | ... | |
| 45 | 48 |
|
| 46 | 49 |
return OafParser.oaf2Result(oaf); |
| 47 | 50 |
} |
| 48 |
public Result fetchDedupResultById(String id) throws Exception {
|
|
| 51 |
public Result fetchDedupById(String id, boolean production) throws Exception {
|
|
| 52 |
String oaf = searchUtils.fetchDedupXmlFromIndex(id, production); |
|
| 53 |
if (oaf == null) {
|
|
| 54 |
return null; |
|
| 55 |
} |
|
| 56 |
return OafParser.oaf2Result(oaf); |
|
| 57 |
} |
|
| 58 |
public Result fetchPublicationById(String id, boolean production) throws Exception {
|
|
| 49 | 59 |
|
| 50 |
String oaf = fetchDedupPublicationResult(id);
|
|
| 60 |
String oaf = fetchPublicationResult(id, production);
|
|
| 51 | 61 |
|
| 52 | 62 |
if (oaf == null) {
|
| 53 |
oaf = fetchDedupDatasetResult(id);
|
|
| 63 |
return null;
|
|
| 54 | 64 |
} |
| 55 | 65 |
|
| 66 |
return OafParser.oaf2Result(oaf); |
|
| 67 |
} |
|
| 68 |
public Result fetchDatasetById(String id, boolean production) throws Exception {
|
|
| 69 |
|
|
| 70 |
String oaf = fetchDatasetResult(id, production); |
|
| 56 | 71 |
if (oaf == null) {
|
| 57 | 72 |
return null; |
| 58 | 73 |
} |
| 59 | 74 |
|
| 60 | 75 |
return OafParser.oaf2Result(oaf); |
| 61 | 76 |
} |
| 77 |
public Result fetchSoftwareById(String id, boolean production) throws Exception {
|
|
| 78 |
|
|
| 79 |
String oaf = fetchSoftwareResult(id, production); |
|
| 80 |
if (oaf == null) {
|
|
| 81 |
return null; |
|
| 82 |
} |
|
| 83 |
return OafParser.oaf2Result(oaf); |
|
| 84 |
} |
|
| 85 |
// public Result fetchDedupResultById(String id) throws Exception {
|
|
| 86 |
// |
|
| 87 |
// String oaf = fetchDedupPublicationResult(id); |
|
| 88 |
// |
|
| 89 |
// if (oaf == null) {
|
|
| 90 |
// oaf = fetchDedupDatasetResult(id); |
|
| 91 |
// } |
|
| 92 |
// |
|
| 93 |
// if (oaf == null) {
|
|
| 94 |
// return null; |
|
| 95 |
// } |
|
| 96 |
// |
|
| 97 |
// return OafParser.oaf2Result(oaf); |
|
| 98 |
// } |
|
| 62 | 99 |
public SearchUtils getSearchUtils() {
|
| 63 | 100 |
return searchUtils; |
| 64 | 101 |
} |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/handler/ProjectHandler.java | ||
|---|---|---|
| 22 | 22 |
|
| 23 | 23 |
private static Logger logger = Logger.getLogger(ProjectHandler.class); |
| 24 | 24 |
|
| 25 |
private String fetchProjectById(String id) throws Exception {
|
|
| 26 |
return searchUtils.fetchProjectXmlFromIndex(id); |
|
| 25 |
private String fetchProjectById(String id, boolean production) throws Exception {
|
|
| 26 |
return searchUtils.fetchProjectXmlFromIndex(id, production);
|
|
| 27 | 27 |
} |
| 28 | 28 |
|
| 29 |
public Project fetchProjectByID(String id) throws Exception {
|
|
| 30 |
return fetchProjectByOaf(fetchProjectById(id)); |
|
| 29 |
public Project fetchProjectByID(String id, boolean production) throws Exception {
|
|
| 30 |
return fetchProjectByOaf(fetchProjectById(id, production));
|
|
| 31 | 31 |
} |
| 32 | 32 |
|
| 33 | 33 |
public Project fetchProjectByOaf(String oaf) throws Exception {
|
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/handler/RelationHandler.java | ||
|---|---|---|
| 46 | 46 |
|
| 47 | 47 |
return relations; |
| 48 | 48 |
} |
| 49 |
public List<Relation> fetchRelationbyID() throws Exception, SQLStoreException {
|
|
| 49 |
public List<Relation> fetchRelationbyID(String id) throws Exception, SQLStoreException {
|
|
| 50 | 50 |
List<Relation> relations = null; |
| 51 |
ResultSet rs = sqlDAO.executePreparedQuery(queryGenerator.generateSelectRelationClaimByIDEnrichedWithDMFClaimsQuery(-1,"169149"));
|
|
| 51 |
ResultSet rs = sqlDAO.executePreparedQuery(queryGenerator.generateSelectRelationClaimByIDEnrichedWithDMFClaimsQuery(-1,id));
|
|
| 52 | 52 |
relations = new ArrayList<Relation>(); |
| 53 | 53 |
|
| 54 | 54 |
while(rs.next()) {
|
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claims/migration/handler/FetchClaimHandler.java | ||
|---|---|---|
| 425 | 425 |
OpenaireEntity openaireEntity = null; |
| 426 | 426 |
if(type == null){
|
| 427 | 427 |
openaireEntity = null; |
| 428 |
}else if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)) {
|
|
| 428 |
}else if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.SOFTWARE)) {
|
|
| 429 | 429 |
openaireEntity= buildResult(rs, index); |
| 430 | 430 |
}else if(type.equals(ClaimUtils.PROJECT)){
|
| 431 | 431 |
openaireEntity = buildProject(rs,index); |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claimsDemo/TestClass.java | ||
|---|---|---|
| 150 | 150 |
types.add(ClaimUtils.PUBLICATION); |
| 151 | 151 |
|
| 152 | 152 |
|
| 153 |
// claims = fetchClaimHandler.fetchClaimsByUser("i.fava@cineca.it",30,0,types);
|
|
| 153 |
claims = fetchClaimHandler.fetchClaimsByUser("argirok_1@hotmail.com",1,0,types, false);
|
|
| 154 | 154 |
// claims = fetchClaimHandler.fetchClaimsByUser("argirok@di.uoa.gr",3,0,null,"claim.claim_date",false,types,false);
|
| 155 | 155 |
// |
| 156 | 156 |
// claims = fetchClaimHandler.fetchClaimsByProject("corda_______::ab9c77ce02967b24fc9c1a74276e4677",5,0);
|
| 157 |
claims = fetchClaimHandler.fetchClaimsByProject("corda__h2020::94c962e736df90a5075a7f660ba3d7f6",12,0,null, "claim.claim_date",false,types,true);
|
|
| 157 |
// claims = fetchClaimHandler.fetchClaimsByProject("corda__h2020::94c962e736df90a5075a7f660ba3d7f6",12,0,null, "claim.claim_date",false,types,true);
|
|
| 158 | 158 |
//claims = fetchClaimHandler.fetchClaimsByToken("corda__h2020::94c962e736df90a5075a7f660ba3d7f6","argiro@gmail.com",12,0,null, "claim.claim_date",false,types,false);
|
| 159 | 159 |
|
| 160 | 160 |
// claims = fetchClaimHandler.fetchClaimsByDate("2016-01-14 14:53:50","2016-04-21",10,0);
|
| ... | ... | |
| 192 | 192 |
public void testInsert() throws Exception, SQLStoreException {
|
| 193 | 193 |
//acm_________::31e0e5e7cbd6e2556336d7e795f55c49 |
| 194 | 194 |
//dedup_wf_001::64ca1e3a4d1590456ad3dd7df8a18cd7 |
| 195 |
|
|
| 196 |
// String id=claimHandler.buildAndInsertClaim("argirok@di.uoa.gr", "project", "corda_______::2c37878a0cede85dbbd1081bb9b4a2f8", "openaire", "OPEN", null,"dataset", "10.5281/ZENODO.154647", "datacite", "EMBARGO","2017-05-01");
|
|
| 195 |
/* |
|
| 196 |
claimedBy argirok_1@hotmail.com |
|
| 197 |
sourceId corda_______::2c37878a0cede85dbbd1081bb9b4a2f8 |
|
| 198 |
sourceType project |
|
| 199 |
sourceCollectedFrom openaire |
|
| 200 |
sourceAccessRights OPEN |
|
| 201 |
sourceEmbargoEndDate |
|
| 202 |
targetId 10.1007/978-3-540-76323-9_4 |
|
| 203 |
targetType software |
|
| 204 |
targetCollectedFrom crossref |
|
| 205 |
targetAccessRights EMBARGO |
|
| 206 |
targetEmbargoEndDate 2028-11-10T13:55:47.935Z |
|
| 207 |
*/ |
|
| 208 |
String id=claimHandler.buildAndInsertClaim("argirok_1@hotmail.com", "project", "corda__h2020::94c962e736df90a5075a7f660ba3d7f6", "openaire", "OPEN", null,"software", "10.1007/978-3-540-76323-9_4", "crossref", "EMBARGO","2028-11-10T13:55:47.935Z");
|
|
| 197 | 209 |
|
| 198 | 210 |
|
| 199 | 211 |
// String id=claimHandler.buildAndInsertClaim("argirok@di.uoa.gr", "context", "egi::country::gr",
|
| ... | ... | |
| 238 | 250 |
@Test |
| 239 | 251 |
public void testHttpRequest() throws Exception {
|
| 240 | 252 |
SearchUtils searchUtils= new SearchUtils(); |
| 241 |
log.info(searchUtils.fetchPublicationXmlFromIndex("doajarticles::eb8a123eb82b25013b0001d0e2d1842b"));
|
|
| 242 |
log.info(searchUtils.fetchDatasetXmlFromIndex("doajarticles::eb8a123eb82b25013b0001d0e2d1842b"));
|
|
| 253 |
log.info(searchUtils.fetchPublicationXmlFromIndex("doajarticles::eb8a123eb82b25013b0001d0e2d1842b", false));
|
|
| 254 |
log.info(searchUtils.fetchDatasetXmlFromIndex("doajarticles::eb8a123eb82b25013b0001d0e2d1842b", false));
|
|
| 243 | 255 |
} |
| 244 | 256 |
|
| 245 | 257 |
@Test |
| 246 | 258 |
public void testXpath() throws Exception {
|
| 247 |
Result r=indexResultHandler.fetchResultById("dedup_wf_001::88a1eedd1ffce63dccf51d8ce2053c85");
|
|
| 259 |
Result r=indexResultHandler.fetchResultById("dedup_wf_001::88a1eedd1ffce63dccf51d8ce2053c85", false);
|
|
| 248 | 260 |
} |
| 249 | 261 |
|
| 250 | 262 |
@Test |
| 263 |
public void testSoftwareXpath() throws Exception {
|
|
| 264 |
// http://scoobydoo.di.uoa.gr:5000/search/software?softwareId=datacite____%3A%3Aabe9e916b29d028789d7ae3c6f79f254 |
|
| 265 |
Result r=indexResultHandler.fetchSoftwareById("datacite____::abe9e916b29d028789d7ae3c6f79f254", false);
|
|
| 266 |
if(r!=null){
|
|
| 267 |
System.out.println(r.toString()); |
|
| 268 |
} |
|
| 269 |
|
|
| 270 |
} |
|
| 271 |
@Test |
|
| 272 |
public void testPublicationXpath() throws Exception {
|
|
| 273 |
Result r=indexResultHandler.fetchPublicationById("od________18::5acd89ab4df2b877a7a208ea2a123a87", false);
|
|
| 274 |
if(r!=null){
|
|
| 275 |
System.out.println(r.toString()); |
|
| 276 |
} |
|
| 277 |
|
|
| 278 |
} |
|
| 279 |
|
|
| 280 |
@Test |
|
| 251 | 281 |
public void testParsingDMF() throws IOException, SAXException, ParserConfigurationException, XPathExpressionException, TransformerException {
|
| 252 | 282 |
Result r=DMFParser.dmf2Result("<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" +
|
| 253 | 283 |
"<record xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:prov=\"http://www.openarchives.org/OAI/2.0/provenance\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xmlns:dri=\"http://www.driver-repository.eu/namespace/dri\" xmlns:dr=\"http://www.driver-repository.eu/namespace/dr\" xmlns:oaf=\"http://namespace.openaire.eu/oaf\">\n" + |
| ... | ... | |
| 307 | 337 |
@Test |
| 308 | 338 |
public void buildProject() throws Exception {
|
| 309 | 339 |
String id = "arc_________::089188bbc5db213fb2b00a0d93043fc4"; |
| 310 |
Project pr = projectHandler.fetchProjectByID(id); |
|
| 340 |
Project pr = projectHandler.fetchProjectByID(id,false);
|
|
| 311 | 341 |
log.info(pr.toString()); |
| 312 | 342 |
id="corda_______::404d91e07cd4d32fddd8fc636ad4daf7"; |
| 313 |
pr = projectHandler.fetchProjectByID(id); |
|
| 343 |
pr = projectHandler.fetchProjectByID(id, false);
|
|
| 314 | 344 |
log.info(pr.toString()); |
| 315 | 345 |
|
| 316 | 346 |
} |
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claimsDemo/ClaimUtils.java | ||
|---|---|---|
| 10 | 10 |
|
| 11 | 11 |
public static final String PUBLICATION = "publication"; |
| 12 | 12 |
public static final String DATASET = "dataset"; |
| 13 |
public static final String SOFTWARE = "software"; |
|
| 13 | 14 |
public static final String PROJECT = "project"; |
| 14 | 15 |
public static final String CONTEXT = "context"; |
| 15 | 16 |
|
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claimsDemo/SearchUtils.java | ||
|---|---|---|
| 1 | 1 |
package eu.dnetlib.data.claimsDemo; |
| 2 | 2 |
|
| 3 |
import eu.dnetlib.data.claims.migration.ClaimValidation; |
|
| 3 | 4 |
import org.apache.log4j.Logger; |
| 4 | 5 |
import org.w3c.dom.Document; |
| 5 | 6 |
import org.w3c.dom.NodeList; |
| ... | ... | |
| 14 | 15 |
import java.net.HttpURLConnection; |
| 15 | 16 |
import java.net.URL; |
| 16 | 17 |
import java.net.URLEncoder; |
| 18 |
import java.sql.Timestamp; |
|
| 19 |
import java.util.Date; |
|
| 17 | 20 |
|
| 18 | 21 |
/** |
| 19 | 22 |
* Created by argirok on 20/11/2015. |
| ... | ... | |
| 27 | 30 |
private static final Logger logger = Logger.getLogger(SearchUtils.class); |
| 28 | 31 |
|
| 29 | 32 |
private static String searchUrl="http://beta.services.openaire.eu:8480/search/search?action=search"; |
| 30 |
// private static String searchUrl="http://services.openaire.eu:8480/search/search?action=search"; |
|
| 31 |
private static String apiUrlForResults=" http://beta.services.openaire.eu:8480/search/api/";//"http://api.openaire.eu/search/"; |
|
| 32 |
private static String apiUrlForDedupResults="http://rudie.di.uoa.gr:8080/dnet-functionality-services-1.2.0-SNAPSHOT/api/"; |
|
| 33 |
private static String apiUrlForProjects="http://beta.services.openaire.eu:8480/search/api/";//"http://rudie.di.uoa.gr:8080/dnet-functionality-services-1.2.0-SNAPSHOT/api/"; |
|
| 33 |
private static String apiUrlForResults="http://beta.services.openaire.eu:8480/search/api";//"http://api.openaire.eu/search"; |
|
| 34 |
// private static String apiUrlForDedupResults="http://rudie.di.uoa.gr:8080/dnet-functionality-services-1.2.0-SNAPSHOT/api/"; |
|
| 35 |
private static String apiUrlForProjects="http://beta.services.openaire.eu:8480/search/api";//"http://rudie.di.uoa.gr:8080/dnet-functionality-services-1.2.0-SNAPSHOT/api/"; |
|
| 36 |
|
|
| 37 |
private static String searchUrlProduction="http://services.openaire.eu:8480/search/search?action=search"; |
|
| 38 |
private static String apiUrlForResultsProduction="http://services.openaire.eu:8480/search/api";//"http://api.openaire.eu/search"; |
|
| 39 |
private static String apiUrlForProjectsProduction="http://services.openaire.eu:8480/search/api";//"http://rudie.di.uoa.gr:8080/dnet-functionality-services-1.2.0-SNAPSHOT/api/"; |
|
| 40 |
|
|
| 41 |
|
|
| 34 | 42 |
private static String crossrefUrl="https://api.crossref.org/works?filter=doi:"; |
| 35 | 43 |
private static String dataciteUrl="https://data.datacite.org/application/rdf+xml/"; |
| 36 | 44 |
private static String dataciteNewAPIUrl="https://api.datacite.org/works/"; |
| 37 | 45 |
private static String orcidUrlPrefix="https://pub.orcid.org/"; |
| 38 | 46 |
private static String orcidUrlSuffix="/orcid-works"; |
| 39 | 47 |
private boolean useApi=true; |
| 48 |
private ClaimValidation claimValidation = null; |
|
| 40 | 49 |
|
| 41 | 50 |
public SearchUtils(){
|
| 42 | 51 |
|
| 43 | 52 |
} |
| 44 | 53 |
|
| 45 |
public static String fetchProjectXmlFromIndex(String id) throws Exception{
|
|
| 46 |
return getRequest(getProjectApiUrl(id)); |
|
| 54 |
public static String fetchProjectXmlFromIndex(String id, boolean production) throws Exception{
|
|
| 55 |
return getRequest(getProjectApiUrl(id, production));
|
|
| 47 | 56 |
} |
| 48 | 57 |
|
| 49 | 58 |
/** |
| ... | ... | |
| 54 | 63 |
* @return xml or null |
| 55 | 64 |
* @throws Exception |
| 56 | 65 |
*/ |
| 57 |
public static String fetchPublicationXmlFromIndex(String id) throws Exception{
|
|
| 66 |
public static String fetchPublicationXmlFromIndex(String id, boolean production) throws Exception{
|
|
| 58 | 67 |
|
| 59 |
String xml=getRequest(getPublicationApiUrl(id)); |
|
| 68 |
String xml=getRequest(getPublicationApiUrl(id, production));
|
|
| 60 | 69 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
| 61 |
String objId=getResultObjIdentifierFromSearch(id); |
|
| 62 |
if(objId!=null){
|
|
| 63 |
xml=getRequest(getPublicationApiUrl(objId)); |
|
| 64 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
|
| 65 |
xml=null; |
|
| 66 |
} |
|
| 67 |
}else{
|
|
| 68 |
xml=null; |
|
| 69 |
} |
|
| 70 |
xml=null; |
|
| 70 | 71 |
} |
| 71 | 72 |
return xml; |
| 72 | 73 |
} |
| 73 |
public static String fetchDedupPublicationXmlFromIndex(String id) throws Exception{
|
|
| 74 |
public static String fetchDedupXmlFromIndex(String id, boolean production) throws Exception{
|
|
| 74 | 75 |
|
| 75 |
String xml=getRequest(getDedupPublicationApiUrl(id)); |
|
| 76 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
|
| 77 |
String objId=getResultObjIdentifierFromSearch(id); |
|
| 76 |
String xml= null; |
|
| 77 |
String objId=getResultObjIdentifierFromSearch(id,production); |
|
| 78 | 78 |
if(objId!=null){
|
| 79 |
xml=getRequest(getDedupPublicationApiUrl(objId)); |
|
| 80 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
|
| 81 |
xml=null; |
|
| 82 |
} |
|
| 83 |
}else{
|
|
| 84 |
xml = null; |
|
| 79 |
xml=getRequest(getPublicationApiUrl(objId, production)); |
|
| 85 | 80 |
} |
| 86 |
} |
|
| 87 | 81 |
return xml; |
| 88 | 82 |
} |
| 89 | 83 |
|
| 84 |
public static String fetchSoftwareXmlFromIndex(String id, boolean production) throws Exception{
|
|
| 85 |
String xml=getRequest(getSoftwareApiUrl(id,production)); |
|
| 86 |
return xml; |
|
| 87 |
} |
|
| 88 |
|
|
| 89 |
|
|
| 90 | 90 |
/** |
| 91 | 91 |
*Look up in API, if there is no result, |
| 92 | 92 |
* consider that id is a dedup id and search for the objIdentifier id. |
| ... | ... | |
| 96 | 96 |
* @return xml |
| 97 | 97 |
* @throws Exception |
| 98 | 98 |
*/ |
| 99 |
public static String fetchDatasetXmlFromIndex(String id) throws Exception{
|
|
| 99 |
public static String fetchDatasetXmlFromIndex(String id, boolean production) throws Exception{
|
|
| 100 | 100 |
|
| 101 |
String xml=getRequest(getDatasetApiUrl(id)); |
|
| 101 |
String xml=getRequest(getDatasetApiUrl(id, production));
|
|
| 102 | 102 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
| 103 |
String objId=getResultObjIdentifierFromSearch(id); |
|
| 104 |
if(objId!=null){
|
|
| 105 |
xml=getRequest(getDatasetApiUrl(objId)); |
|
| 106 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
|
| 107 |
xml=null; |
|
| 108 |
} |
|
| 109 |
}else{
|
|
| 110 |
xml=null; |
|
| 111 |
} |
|
| 103 |
xml=null; |
|
| 112 | 104 |
} |
| 113 | 105 |
return xml; |
| 114 | 106 |
|
| 115 | 107 |
} |
| 116 |
public static String fetchDedupDatasetXmlFromIndex(String id) throws Exception{
|
|
| 117 | 108 |
|
| 118 |
String xml=getRequest(getDedupDatasetApiUrl(id)); |
|
| 119 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
|
| 120 |
String objId=getResultObjIdentifierFromSearch(id); |
|
| 121 |
if(objId!=null){
|
|
| 122 |
xml=getRequest(getDedupDatasetApiUrl(objId)); |
|
| 123 |
if(getNumberOfResultsInAPIXML(xml)==0){
|
|
| 124 |
xml=null; |
|
| 125 |
} |
|
| 126 |
}else{
|
|
| 127 |
xml = null; |
|
| 128 |
} |
|
| 129 |
} |
|
| 130 |
return xml; |
|
| 131 |
|
|
| 132 |
} |
|
| 133 |
|
|
| 134 | 109 |
public static String fetchResultXMLFromDatacite(String id) throws Exception{
|
| 135 | 110 |
return getRequest(getDataciteUrl(id)); |
| 136 | 111 |
} |
| ... | ... | |
| 139 | 114 |
return getRequest(getOrcidUrl(id)); |
| 140 | 115 |
} |
| 141 | 116 |
|
| 142 |
public static String getProjectApiUrl(String id) {
|
|
| 117 |
public static String getProjectApiUrl(String id, boolean production) {
|
|
| 143 | 118 |
|
| 144 |
return apiUrlForProjects+"/projects?openaireProjectID="+id;
|
|
| 119 |
return ((production)?apiUrlForProjectsProduction:apiUrlForProjects)+"/projects?openaireProjectID="+id;
|
|
| 145 | 120 |
} |
| 146 | 121 |
|
| 147 |
public static String getDatasetApiUrl(String id) {
|
|
| 122 |
public static String getDatasetApiUrl(String id, boolean production) {
|
|
| 148 | 123 |
|
| 149 |
return apiUrlForResults+"/datasets?openaireDatasetID="+id;
|
|
| 124 |
return ((production)?apiUrlForResultsProduction:apiUrlForResults)+"/datasets?openaireDatasetID="+id;
|
|
| 150 | 125 |
} |
| 151 |
public static String getDedupDatasetApiUrl(String id) {
|
|
| 152 | 126 |
|
| 153 |
return apiUrlForDedupResults+"/datasets?openaireDatasetID="+id; |
|
| 154 |
} |
|
| 155 |
public static String getPublicationApiUrl(String id) {
|
|
| 127 |
public static String getPublicationApiUrl(String id, boolean production) {
|
|
| 156 | 128 |
|
| 157 |
return apiUrlForResults+"/publications?openairePublicationID="+id;
|
|
| 129 |
return ((production)?apiUrlForResultsProduction:apiUrlForResults)+"/publications?openairePublicationID="+id;
|
|
| 158 | 130 |
} |
| 159 |
public static String getDedupPublicationApiUrl(String id) {
|
|
| 160 |
|
|
| 161 |
return apiUrlForDedupResults+"/publications?openairePublicationID="+id; |
|
| 131 |
public static String getSoftwareApiUrl(String id, boolean production) {
|
|
| 132 |
//TODO change to beta when it's ready |
|
| 133 |
// return ((production)?apiUrlForResultsProduction:apiUrlForResults)+"/software/"+id; |
|
| 134 |
return "http://rudie.di.uoa.gr:8080/dnet-functionality-services-2.0.0-SNAPSHOT/api"+"/software?openaireSoftwareID="+id; |
|
| 162 | 135 |
} |
| 136 |
// public static String getDedupPublicationApiUrl(String id) {
|
|
| 137 |
// |
|
| 138 |
// return apiUrlForDedupResults+"/publications?openairePublicationID="+id; |
|
| 139 |
// } |
|
| 163 | 140 |
private static String getDataciteUrl(String id) {
|
| 164 | 141 |
|
| 165 | 142 |
return dataciteNewAPIUrl+id; |
| ... | ... | |
| 176 | 153 |
* @param resultdupid |
| 177 | 154 |
* @return |
| 178 | 155 |
*/ |
| 179 |
private static String getResultXMLByResultdupidSearchByUrl(String resultdupid) {
|
|
| 156 |
private static String getResultXMLByResultdupidSearchByUrl(String resultdupid, boolean production) {
|
|
| 180 | 157 |
String url= null; |
| 181 | 158 |
try {
|
| 182 |
url = searchUrl+"&sTransformer=results_openaire&query="+
|
|
| 159 |
url = ((production)?searchUrlProduction:searchUrl)+"&sTransformer=results_openaire&query="+
|
|
| 183 | 160 |
URLEncoder.encode("(((deletedbyinference = false) AND (oaftype exact result)) )" +
|
| 184 | 161 |
" and (resultdupid exact " + resultdupid + ")", "UTF-8") |
| 185 | 162 |
+"&size=10&locale=en_GB"; |
| ... | ... | |
| 188 | 165 |
} |
| 189 | 166 |
return url; |
| 190 | 167 |
} |
| 168 |
// private static String getSoftwareXMLByIdSearchByUrl(String id, boolean production) {
|
|
| 169 |
// String url= null; |
|
| 170 |
// try {
|
|
| 171 |
// url = ((production)?searchUrlProduction:searchUrl)+"&sTransformer=results_openaire&query="+ |
|
| 172 |
// URLEncoder.encode("(((deletedbyinference = false) AND (resulttypeid exact software) AND (oaftype exact result)) )" +
|
|
| 173 |
// " and (objIdentifier exact " + id + ")", "UTF-8") |
|
| 174 |
// +"&size=1&locale=en_GB"; |
|
| 175 |
// } catch (UnsupportedEncodingException e) {
|
|
| 176 |
// logger.error("UnsupportedEncodingException",e);
|
|
| 177 |
// } |
|
| 178 |
// return url; |
|
| 179 |
// } |
|
| 191 | 180 |
|
| 192 |
|
|
| 193 | 181 |
// HTTP GET request |
| 194 | 182 |
private static String getRequest(String url) throws Exception {
|
| 195 | 183 |
URL obj = new URL(url); |
| 184 |
// logger.debug(url); |
|
| 196 | 185 |
HttpURLConnection con = (HttpURLConnection) obj.openConnection(); |
| 197 | 186 |
int responseCode = con.getResponseCode(); |
| 198 | 187 |
if(responseCode != 200){
|
| ... | ... | |
| 229 | 218 |
} catch (Exception e) {
|
| 230 | 219 |
try{
|
| 231 | 220 |
PrintWriter out = new PrintWriter(new BufferedWriter(new FileWriter("dois_malformed_urls.txt", true)));
|
| 232 |
out.println("Doi:"+doi+" Url:"+url);
|
|
| 221 |
Date date= new java.util.Date(); |
|
| 222 |
out.println(new Timestamp(date.getTime())+"Doi:"+doi+" Url:"+url); |
|
| 233 | 223 |
out.close(); |
| 234 | 224 |
|
| 235 | 225 |
}catch (IOException e1) {
|
| ... | ... | |
| 260 | 250 |
* @param resultdupid Openaire Id |
| 261 | 251 |
* @return objIdentifier |
| 262 | 252 |
*/ |
| 263 |
private static String getResultObjIdentifierFromSearch(String resultdupid) throws Exception {
|
|
| 264 |
String xml=getRequest(getResultXMLByResultdupidSearchByUrl(resultdupid)); |
|
| 253 |
private static String getResultObjIdentifierFromSearch(String resultdupid, boolean production) throws Exception {
|
|
| 254 |
String xml=getRequest(getResultXMLByResultdupidSearchByUrl(resultdupid,production));
|
|
| 265 | 255 |
String objIdentifier=null; |
| 266 | 256 |
String size=null; |
| 267 | 257 |
DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance(); |
| ... | ... | |
| 311 | 301 |
return total; |
| 312 | 302 |
} |
| 313 | 303 |
|
| 304 |
public ClaimValidation getClaimValidation() {
|
|
| 305 |
return claimValidation; |
|
| 306 |
} |
|
| 314 | 307 |
|
| 308 |
public void setClaimValidation(ClaimValidation claimValidation) {
|
|
| 309 |
this.claimValidation = claimValidation; |
|
| 310 |
} |
|
| 315 | 311 |
} |
| 316 | 312 |
|
| 317 | 313 |
|
| modules/uoa-claims/trunk/src/main/java/eu/dnetlib/data/claimsDemo/QueryGenerator.java | ||
|---|---|---|
| 261 | 261 |
if(type==null){
|
| 262 | 262 |
return null; |
| 263 | 263 |
} |
| 264 |
if(type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.PUBLICATION)){
|
|
| 264 |
if(type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.SOFTWARE)){
|
|
| 265 | 265 |
Result result=(Result)openaireEntity; |
| 266 | 266 |
query=generateInsertResultQuery(result.getOpenaireId(),result.getResultType(),result.getTitle(),result.getCollectedFrom(),result.getExternalUrl(),result.getDoi(), result.getOrcidworkid(), result.getAccessRights(),result.getEmbargoEndDate(),result.getBestLicense(),result.getRecordPath(), result.getRecordFormat(), params); |
| 267 | 267 |
}else if(type.equals(ClaimUtils.PROJECT)){
|
| ... | ... | |
| 318 | 318 |
*/ |
| 319 | 319 |
private String createSemanticsType(String sourceType,String targetType){
|
| 320 | 320 |
String semantics=null; |
| 321 |
if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.DATASET))){
|
|
| 322 |
semantics="resultResult_publicationDataset_isRelatedTo"; |
|
| 321 |
// if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.DATASET))){
|
|
| 322 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 323 |
// } |
|
| 324 |
// else if(targetType.equals(ClaimUtils.DATASET)&&sourceType.equals(ClaimUtils.PUBLICATION)){
|
|
| 325 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 326 |
// } |
|
| 327 |
// if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.SOFTWARE))){
|
|
| 328 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 329 |
// } |
|
| 330 |
// else if(targetType.equals(ClaimUtils.SOFTWARE)&&sourceType.equals(ClaimUtils.PUBLICATION)){
|
|
| 331 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 332 |
// } |
|
| 333 |
// if((targetType.equals(ClaimUtils.DATASET))&&(sourceType.equals(ClaimUtils.SOFTWARE))){
|
|
| 334 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 335 |
// } |
|
| 336 |
// else if(targetType.equals(ClaimUtils.SOFTWARE)&&sourceType.equals(ClaimUtils.DATASET)){
|
|
| 337 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 338 |
// } |
|
| 339 |
// else if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.PUBLICATION))){
|
|
| 340 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 341 |
// } |
|
| 342 |
// else if(targetType.equals(ClaimUtils.DATASET)&&sourceType.equals(ClaimUtils.DATASET)){
|
|
| 343 |
// semantics="resultResult_relationship_isRelatedTo"; |
|
| 344 |
// } |
|
| 345 |
// else if(targetType.equals(ClaimUtils.SOFTWARE)&&sourceType.equals(ClaimUtils.SOFTWARE)){
|
|
| 346 |
// semantics="resultResult_supplement_isSupplementTo"; |
|
| 347 |
// } |
|
| 348 |
//add above more specific semantics for pub,data and software |
|
| 349 |
if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET)||targetType.equals(ClaimUtils.SOFTWARE))&&(sourceType.equals(ClaimUtils.PUBLICATION)||sourceType.equals(ClaimUtils.DATASET)||sourceType.equals(ClaimUtils.SOFTWARE))){
|
|
| 350 |
semantics="resultResult_relationship_isRelatedTo"; |
|
| 323 | 351 |
} |
| 324 |
else if(targetType.equals(ClaimUtils.DATASET)&&sourceType.equals(ClaimUtils.PUBLICATION)){
|
|
| 325 |
semantics="resultResult_publicationDataset_isRelatedTo"; |
|
| 326 |
} |
|
| 327 |
else if((targetType.equals(ClaimUtils.PUBLICATION))&&(sourceType.equals(ClaimUtils.PUBLICATION))){
|
|
| 328 |
semantics="resultResult_supplement_isSupplementedBy"; |
|
| 329 |
} |
|
| 330 |
else if(targetType.equals(ClaimUtils.DATASET)&&sourceType.equals(ClaimUtils.DATASET)){
|
|
| 331 |
semantics="resultResult_supplement_isSupplementTo"; |
|
| 332 |
} |
|
| 333 |
else if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET))&&(sourceType.equals(ClaimUtils.PROJECT))){
|
|
| 352 |
else if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET)||targetType.equals(ClaimUtils.SOFTWARE))&&(sourceType.equals(ClaimUtils.PROJECT))){
|
|
| 334 | 353 |
semantics= "resultProject_outcome_produces"; //"resultProject_outcome_isProducedBy"; |
| 335 | 354 |
} |
| 336 |
else if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET))&&(sourceType.equals(ClaimUtils.CONTEXT))){
|
|
| 355 |
else if((targetType.equals(ClaimUtils.PUBLICATION)||targetType.equals(ClaimUtils.DATASET)||targetType.equals(ClaimUtils.SOFTWARE))&&(sourceType.equals(ClaimUtils.CONTEXT))){
|
|
| 337 | 356 |
semantics= "isRelevantTo"; |
| 338 | 357 |
} |
| 339 | 358 |
|
| ... | ... | |
| 582 | 601 |
private String addFilterByType( List<String> types, ArrayList<Object> params) {
|
| 583 | 602 |
if(types == null || types.isEmpty()){
|
| 584 | 603 |
return null; |
| 585 |
}else if (types.contains(ClaimUtils.PUBLICATION) && types.contains(ClaimUtils.DATASET) && types.contains(ClaimUtils.PROJECT) && types.contains(ClaimUtils.CONTEXT) ){
|
|
| 604 |
}else if (types.contains(ClaimUtils.PUBLICATION) && types.contains(ClaimUtils.DATASET) && types.contains(ClaimUtils.SOFTWARE) && types.contains(ClaimUtils.PROJECT) && types.contains(ClaimUtils.CONTEXT) ){
|
|
| 586 | 605 |
//it's all types - no need to filter |
| 587 | 606 |
return null; |
| 588 | 607 |
} |
| ... | ... | |
| 770 | 789 |
ArrayList<Object> clauseParams = new ArrayList<>(); |
| 771 | 790 |
clauseParams.add(claimId); |
| 772 | 791 |
String orderbyLimitClause= null; |
| 773 |
if(sourceType.equals(ClaimUtils.PUBLICATION)||sourceType.equals(ClaimUtils.DATASET)){
|
|
| 792 |
if(sourceType.equals(ClaimUtils.PUBLICATION)||sourceType.equals(ClaimUtils.DATASET)||sourceType.equals(ClaimUtils.SOFTWARE)){
|
|
| 774 | 793 |
return generateSelectclaimQuery(sourceType,targetType,null,null,null,false, clause,clauseParams,keyword, params); |
| 775 | 794 |
}else if(sourceType.equals(ClaimUtils.PROJECT)){
|
| 776 | 795 |
return generateSelectclaimQuery(sourceType,targetType,null,null,null,false, clause,clauseParams,keyword, params); |
| ... | ... | |
| 797 | 816 |
String fields= null; |
| 798 | 817 |
|
| 799 | 818 |
if (type != null) {
|
| 800 |
if (type.equals(ClaimUtils.PUBLICATION) || type.equals(ClaimUtils.DATASET)) {
|
|
| 819 |
if (type.equals(ClaimUtils.PUBLICATION) || type.equals(ClaimUtils.DATASET) || type.equals(ClaimUtils.SOFTWARE)) {
|
|
| 801 | 820 |
fields = getResultFields(tableAlias); |
| 802 | 821 |
|
| 803 | 822 |
} else if (type.equals(ClaimUtils.PROJECT)) {
|
| ... | ... | |
| 840 | 859 |
return ""; |
| 841 | 860 |
} |
| 842 | 861 |
keyword=keyword.toLowerCase(); |
| 843 |
if (type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)){
|
|
| 862 |
if (type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)||type.equals(ClaimUtils.SOFTWARE)){
|
|
| 844 | 863 |
params.add("%" + keyword + "%");
|
| 845 | 864 |
params.add("%" + keyword + "%");
|
| 846 | 865 |
return " (lower("+tableAlias+".title) like ? or lower("+tableAlias+".doi) like ?"+")";
|
| ... | ... | |
| 873 | 892 |
|
| 874 | 893 |
" ( " +generateSelectclaimQuery(ClaimUtils.PUBLICATION,ClaimUtils.PUBLICATION,null,null,null,false, specificWhereClause,whereParams,keyword, params)+" ) \nunion "+ |
| 875 | 894 |
" ( " +generateSelectclaimQuery(ClaimUtils.DATASET,ClaimUtils.DATASET,null,null,null,false, specificWhereClause, whereParams,keyword, params)+" ) \nunion "+ |
| 895 |
" ( " +generateSelectclaimQuery(ClaimUtils.SOFTWARE,ClaimUtils.SOFTWARE,null,null,null,false, specificWhereClause, whereParams,keyword, params)+" ) \nunion "+ |
|
| 876 | 896 |
" ( " +generateSelectclaimQuery(ClaimUtils.PROJECT,ClaimUtils.PUBLICATION, null,null,null,false, specificWhereClause, whereParams,keyword, params)+" ) \nunion "+ |
| 877 | 897 |
" ( " +generateSelectclaimQuery(ClaimUtils.CONTEXT,ClaimUtils.PUBLICATION,null,null,null,false, specificWhereClause, whereParams, keyword, params)+" )" + |
| 878 | 898 |
|
| ... | ... | |
| 888 | 908 |
if(type == null){
|
| 889 | 909 |
return null; |
| 890 | 910 |
} |
| 891 |
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)){
|
|
| 911 |
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET) ||type.equals(ClaimUtils.SOFTWARE)){
|
|
| 892 | 912 |
return "result"; |
| 893 | 913 |
}else{
|
| 894 | 914 |
return type; |
| ... | ... | |
| 913 | 933 |
return null; |
| 914 | 934 |
} |
| 915 | 935 |
String query = null; |
| 916 |
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET)){
|
|
| 936 |
if(type.equals(ClaimUtils.PUBLICATION)||type.equals(ClaimUtils.DATASET) ||type.equals(ClaimUtils.SOFTWARE)){
|
|
| 917 | 937 |
query = generateDeleteResultQuery(resultid,claimId, params); |
| 918 | 938 |
}else if(type.equals(ClaimUtils.PROJECT)){
|
| 919 | 939 |
query = generateDeleteProjectQuery(resultid,claimId, params); |
| modules/uoa-claims/trunk/src/main/resources/eu/dnetlib/data/claims/migration/springContext-claimsDemo.xml | ||
|---|---|---|
| 34 | 34 |
<property name="projectHandler" ref="projectHandler"/> |
| 35 | 35 |
<property name="resultHandler" ref="resultHandler"/> |
| 36 | 36 |
<property name="claimValidation" ref="claimValidation"/> |
| 37 |
<property name="useProductionIndex" value="${services.claimsDemo.useProductionIndex}"/>
|
|
| 37 | 38 |
</bean> |
| 38 | 39 |
<bean id="externalRecordHandler" class="eu.dnetlib.data.claims.migration.handler.ExternalRecordHandler"> |
| 39 | 40 |
<property name="searchUtils" ref="searchUtils"/> |
| modules/uoa-claims/trunk/src/main/resources/eu/dnetlib/data/claims/migration/springContext-claimsDemo.properties | ||
|---|---|---|
| 1 | 1 |
|
| 2 | 2 |
services.claimsDemo.db.driverClassName = org.postgresql.Driver |
| 3 |
services.claimsDemo.db.url = jdbc:postgresql://scoobydoo.di.uoa.gr:5432/claims_beta_last
|
|
| 3 |
services.claimsDemo.db.url = jdbc:postgresql://scoobydoo.di.uoa.gr:5432/claimsnewschema
|
|
| 4 | 4 |
services.claimsDemo.db.username = postgres |
| 5 | 5 |
services.claimsDemo.db.password = snowflakes |
| 6 | 6 |
services.claimsDemo.directClaim.APIURL = http://beta.services.openaire.eu:8280/is/mvc/api/publications |
| 7 |
services.claimsDemo.useProductionIndex = false |
|
| 7 | 8 |
|
| 8 | 9 |
#email properties |
| 9 | 10 |
## EMAIL SETTINGS |
| ... | ... | |
| 14 | 15 |
services.claims.mail.angularUrl = http://duffy.di.uoa.gr:3000/claims-project-manager?token= |
| 15 | 16 |
services.claims.mail.specialRecipients = invalid_recipient@email.com |
| 16 | 17 |
|
| 17 |
services.claimsDemo.results.pathToSaveRecord = /home/argirok/claims_beta/records/ |
|
| 18 |
services.claimsDemo.reports.pathToSaveReport = /home/argirok/claims_beta/reports/ |
|
| 18 |
services.claimsDemo.results.pathToSaveRecord = /home/argirok/claims_www/records/ |
|
| 19 |
services.claimsDemo.reports.pathToSaveReport = /home/argirok/claims_www/reports/ |
|
Also available in: Unified diff
change migration procedure: search first in beta then in production| add software | change directIndexHandler check for response