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package eu.dnetlib.repo.manager.service.controllers;
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import com.fasterxml.jackson.databind.DeserializationFeature;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.fasterxml.jackson.databind.exc.UnrecognizedPropertyException;
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import eu.dnetlib.domain.enabling.Vocabulary;
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import eu.dnetlib.repo.manager.service.utils.Converter;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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import gr.uoa.di.driver.enabling.vocabulary.VocabularyLoader;
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import io.swagger.annotations.Api;
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import org.apache.log4j.Logger;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.json.JSONObject;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
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import org.springframework.stereotype.Component;
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import org.springframework.web.bind.annotation.PathVariable;
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import org.springframework.web.bind.annotation.RequestBody;
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import org.springframework.web.bind.annotation.RequestParam;
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import org.springframework.web.client.RestTemplate;
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import org.springframework.web.util.UriComponents;
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import org.springframework.web.util.UriComponentsBuilder;
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import javax.annotation.PostConstruct;
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import java.sql.Timestamp;
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import java.text.Normalizer;
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import java.util.*;
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import java.util.concurrent.ConcurrentHashMap;
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import eu.dnetlib.repo.manager.shared.*;
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@Component
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public class RepositoryApiImpl implements RepositoryApi {
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@Value("${api.baseAddress}")
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private String baseAddress;
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private RestTemplate restTemplate = null;
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private final String[] vocabularyNames = {"dnet:countries", "dnet:datasource_typologies", "dnet:compatibilityLevel"};
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private static final Logger LOGGER = Logger.getLogger(RepositoryApiImpl.class);
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@Autowired
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private VocabularyLoader vocabularyLoader;
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private Map<String, Vocabulary> vocabularyMap = new ConcurrentHashMap<String, Vocabulary>();
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private Map<String, String> countriesMap = new HashMap<>();
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private Map<String, String> inverseCountriesMap = new HashMap<>();
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@PostConstruct
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private void init() {
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LOGGER.debug("Initialization method of repository api!");
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restTemplate = new RestTemplate();
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restTemplate.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
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for (String vocName : vocabularyNames) {
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vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
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}
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Country[] countries = getCountries();
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for (Country c : countries) {
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countriesMap.put(c.getName(), c.getCode());
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inverseCountriesMap.put(c.getCode(), c.getName());
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}
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}
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@Override
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public List<String> testAggregations() throws JSONException {
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int page = 0;
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int size = 1000;
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/list/")
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.path("/{page}/{size}/")
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.build().expand(page, size).encode();
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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List<String> ids = new ArrayList<>();
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while (!rs.equals("[]")) {
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ids.addAll(getIdsWithNonEmptyAggregations(rs));
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LOGGER.debug("Checked " + (page + 1) * size + " records!");
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page += 1;
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uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/list/")
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.path("/{page}/{size}/")
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.build().expand(page, size).encode();
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rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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}
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return ids;
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}
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private List<String> getIdsWithNonEmptyAggregations(String rs) throws JSONException {
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JSONArray ids = new JSONArray(rs);
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List<String> agg_ids = new ArrayList<>();
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for (int i = 0; i < ids.length(); i++) {
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String id = ids.getString(i);
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Aggregations aggregations = getRepositoryAggregations(id);
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if (aggregations.getAggregationHistory() != null)
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agg_ids.add(id);
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}
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return agg_ids;
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}
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@Override
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public Country[] getCountries() {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/countries")
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.build().encode();
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return restTemplate.getForObject(uriComponents.toUri(), Country[].class);
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}
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@Override
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public List<Repository> getRepositoriesByCountry(@PathVariable("country") String country,
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@PathVariable("mode") String mode) throws JSONException {
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LOGGER.debug("Getting repositories by country!");
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int page = 0;
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int size = 100;
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String countryCode = countriesMap.get(country);
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String filterKey = "UNKNOWN";
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if (mode.equalsIgnoreCase("opendoar")) {
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filterKey = "openaire____::opendoar";
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} else if (mode.equalsIgnoreCase("re3data")) {
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filterKey = "openaire____::re3data";
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} else if (mode.equalsIgnoreCase("jour_aggr")) {
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filterKey = "infrastruct_::openaire";
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}
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LOGGER.debug("Country code equals : " + countryCode);
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LOGGER.debug("Filter mode equals : " + filterKey);
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/search/country/")
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.path("/{page}/{size}/")
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.queryParam("country", countryCode)
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.build().expand(page, size).encode();
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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List<Repository> resultSet = new ArrayList<>();
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while (!rs.equals("[]")) {
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List<Repository> rep = Converter.jsonToRepositoryList(new JSONArray(rs));
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Collection<Repository> repos = this.getRepositoriesByMode(filterKey, rep);
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resultSet.addAll(repos);
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page += 1;
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uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/search/country/")
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.path("/{page}/{size}/")
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.queryParam("country", countryCode)
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.build().expand(page, size).encode();
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rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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}
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for (Repository r : resultSet)
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r.setCountryName(getCountryName(r.getCountryCode()));
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return resultSet;
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}
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private Collection<Repository> getRepositoriesByMode(String mode, List<Repository> rs) {
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List<Repository> reps = new ArrayList<>();
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for (Repository r : rs) {
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if (r.getCollectedFrom().equals(mode))
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reps.add(r);
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}
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return reps;
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}
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@Override
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public List<Repository> getRepositoriesOfUser(@PathVariable("userEmail") String userEmail,
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@PathVariable("page") String page,
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@PathVariable("size") String size) throws JSONException {
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LOGGER.debug("Retreiving repositories of user : " + userEmail );
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/search/registeredby/")
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.path("/{page}/{size}/")
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.queryParam("registeredBy", userEmail)
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.build().expand(page, size).encode();
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONArray(rs));
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for (Repository r : repos){
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// r.setInterfaces(this.getRepositoryInterface(r.getId()));
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r.setCountryName(getCountryName(r.getCountryCode()));
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}
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return repos;
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}
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| 206 |
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@Override
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| 207 |
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public Repository getRepositoryById(@PathVariable("id") String id) throws JSONException {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/get/")
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.path("/{id}/")
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.build().expand(id).encode();
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| 213 |
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| 214 |
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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| 215 |
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Repository repo = Converter.jsonToRepositoryObject(new JSONObject(rs));
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//repo.setInterfaces(this.getRepositoryInterface(repo.getId()));
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| 217 |
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if (repo != null)
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| 218 |
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repo.setCountryName(getCountryName(repo.getCountryCode()));
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return repo;
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| 220 |
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}
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| 221 |
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| 222 |
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|
| 223 |
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@Override
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| 224 |
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public Aggregations getRepositoryAggregations(@PathVariable("id") String id) throws JSONException {
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| 225 |
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| 226 |
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UriComponents uriComponents = UriComponentsBuilder
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| 227 |
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.fromHttpUrl(baseAddress + "/ds/get/")
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| 228 |
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.path("/{id}/")
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| 229 |
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.build().expand(id).encode();
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| 230 |
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| 231 |
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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| 232 |
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JSONObject repository = new JSONObject(rs);
|
| 233 |
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| 234 |
|
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Aggregations aggregations = new Aggregations();
|
| 235 |
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|
| 236 |
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try {
|
| 237 |
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aggregations.setAggregationHistory(Converter.getAggregationHistoryFromJson(repository));
|
| 238 |
|
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aggregations.setLastCollection(Converter.getLastCollectionFromJson(repository));
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| 239 |
|
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aggregations.setLastTransformation(Converter.getLastTransformationFromJson(repository));
|
| 240 |
|
|
return aggregations;
|
| 241 |
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} catch (JSONException e) {
|
| 242 |
|
|
LOGGER.debug("JSON aggregation exception ", e);
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| 243 |
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throw e;
|
| 244 |
|
|
}
|
| 245 |
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|
| 246 |
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}
|
| 247 |
|
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| 248 |
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@Override
|
| 249 |
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public List<Repository> getRepositoriesByName(@PathVariable("name") String name,
|
| 250 |
|
|
@PathVariable("page") String page,
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| 251 |
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@PathVariable("size") String size) throws JSONException {
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| 252 |
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UriComponents uriComponents = UriComponentsBuilder
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| 253 |
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.fromHttpUrl(baseAddress + "/ds/search/name/")
|
| 254 |
|
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.path("/{page}/{size}")
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| 255 |
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.queryParam("name", name)
|
| 256 |
|
|
.build().expand(page, size).encode();
|
| 257 |
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|
|
| 258 |
|
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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| 259 |
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panagiotis
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONArray(rs));
|
| 260 |
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for (Repository r : repos){
|
| 261 |
|
|
// r.setInterfaces(this.getRepositoryInterface(r.getId()));
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| 262 |
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panagiotis
|
r.setCountryName(getCountryName(r.getCountryCode()));
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| 263 |
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}
|
| 264 |
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return repos;
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| 265 |
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}
|
| 266 |
|
|
|
| 267 |
|
|
@Override
|
| 268 |
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public List<RepositoryInterface> getRepositoryInterface(@PathVariable("id") String id) throws JSONException {
|
| 269 |
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panagiotis
|
|
| 270 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 271 |
49813
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panagiotis
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.fromHttpUrl(baseAddress + "/ds/api/")
|
| 272 |
49397
|
panagiotis
|
.path("/{id}/")
|
| 273 |
|
|
.build().expand(id).encode();
|
| 274 |
|
|
|
| 275 |
49960
|
panagiotis
|
String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
|
| 276 |
49988
|
panagiotis
|
return Converter.jsonToRepositoryInterfaceList(new JSONArray(rs));
|
| 277 |
49236
|
panagiotis
|
}
|
| 278 |
|
|
|
| 279 |
|
|
@Override
|
| 280 |
49960
|
panagiotis
|
public void addRepository(@RequestBody String params) throws Exception {
|
| 281 |
49898
|
panagiotis
|
|
| 282 |
49960
|
panagiotis
|
JSONObject json_params = new JSONObject(params);
|
| 283 |
|
|
String datatype = json_params.getString("datatype");
|
| 284 |
|
|
String json_repository = json_params.getString("repository");
|
| 285 |
|
|
Repository repository = null;
|
| 286 |
|
|
ObjectMapper mapper = new ObjectMapper();
|
| 287 |
49975
|
panagiotis
|
mapper.disable(DeserializationFeature.FAIL_ON_UNK‌​NOWN_PROPERTIES);
|
| 288 |
49960
|
panagiotis
|
try {
|
| 289 |
49975
|
panagiotis
|
LOGGER.debug("repository -> " + json_repository);
|
| 290 |
49960
|
panagiotis
|
repository = mapper.readValue(json_repository, Repository.class);
|
| 291 |
|
|
} catch (Exception e) {
|
| 292 |
|
|
LOGGER.debug("Error parsing repository ", e);
|
| 293 |
49975
|
panagiotis
|
throw e;
|
| 294 |
49960
|
panagiotis
|
}
|
| 295 |
|
|
|
| 296 |
49963
|
panagiotis
|
repository = this.setRepositoryFeatures(datatype,repository);
|
| 297 |
49960
|
panagiotis
|
|
| 298 |
|
|
LOGGER.debug("storing " + datatype + " repository with id: " + repository.getId());
|
| 299 |
49963
|
panagiotis
|
if (!datatype.equalsIgnoreCase("opendoar") && !datatype.equalsIgnoreCase("re3data")) {
|
| 300 |
|
|
if (datatype.equalsIgnoreCase("journal") || datatype.equalsIgnoreCase("aggregator")) {
|
| 301 |
|
|
LOGGER.debug("looking if " + datatype + " " + repository.getOfficialName() + " is already in datasources");
|
| 302 |
|
|
if (getRepositoryById(repository.getId()) != null) {
|
| 303 |
|
|
String retMessage = datatype + " '" + repository.getOfficialName() + "' is already in datasources.";
|
| 304 |
|
|
repository.getInterfaces().clear();
|
| 305 |
|
|
LOGGER.debug(retMessage);
|
| 306 |
|
|
} else {
|
| 307 |
|
|
LOGGER.debug(datatype + " " + repository.getOfficialName() + " is not in datasources. Inserting..");
|
| 308 |
49975
|
panagiotis
|
this.storeRepository(repository);
|
| 309 |
49960
|
panagiotis
|
}
|
| 310 |
|
|
}
|
| 311 |
49963
|
panagiotis
|
} else {
|
| 312 |
49975
|
panagiotis
|
this.updateRegisteredByValue(repository.getId(),repository.getRegisteredBy());
|
| 313 |
49960
|
panagiotis
|
}
|
| 314 |
|
|
|
| 315 |
|
|
LOGGER.debug("Inserting Interfaces");
|
| 316 |
49963
|
panagiotis
|
Iterator var11 = repository.getInterfaces().iterator();
|
| 317 |
49960
|
panagiotis
|
|
| 318 |
|
|
while (var11.hasNext()) {
|
| 319 |
|
|
RepositoryInterface iFace = (RepositoryInterface) var11.next();
|
| 320 |
|
|
if (!iFace.getBaseUrl().isEmpty() && !iFace.getDesiredCompatibilityLevel().isEmpty()) {
|
| 321 |
|
|
if (iFace.getId() != null && !iFace.getId().isEmpty()) {
|
| 322 |
|
|
LOGGER.debug("updating iface..");
|
| 323 |
49963
|
panagiotis
|
this.updateInterface(datatype,iFace);
|
| 324 |
49960
|
panagiotis
|
LOGGER.debug("updated successfully");
|
| 325 |
|
|
} else {
|
| 326 |
|
|
LOGGER.debug("adding new iface..");
|
| 327 |
49975
|
panagiotis
|
this.registerRepositoryInterface(repository.getId(),iFace,datatype);
|
| 328 |
49963
|
panagiotis
|
}
|
| 329 |
|
|
}
|
| 330 |
|
|
}
|
| 331 |
|
|
}
|
| 332 |
49960
|
panagiotis
|
|
| 333 |
49975
|
panagiotis
|
private void updateRegisteredByValue(String id, String registeredBy) {
|
| 334 |
|
|
|
| 335 |
|
|
LOGGER.debug("Updating registered by value with : " + registeredBy );
|
| 336 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 337 |
49986
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/registeredby/")
|
| 338 |
49975
|
panagiotis
|
.queryParam("dsId",id)
|
| 339 |
|
|
.queryParam("registeredBy", registeredBy)
|
| 340 |
|
|
.build()
|
| 341 |
|
|
.encode();
|
| 342 |
49986
|
panagiotis
|
|
| 343 |
49975
|
panagiotis
|
restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 344 |
|
|
}
|
| 345 |
|
|
|
| 346 |
49963
|
panagiotis
|
private Repository setRepositoryFeatures(String datatype, Repository repository) {
|
| 347 |
49960
|
panagiotis
|
|
| 348 |
49963
|
panagiotis
|
//TODO update map
|
| 349 |
|
|
repository.setCountryCode(countriesMap.get(repository.getCountryName()));
|
| 350 |
49960
|
panagiotis
|
|
| 351 |
49963
|
panagiotis
|
repository.setActivationId(UUID.randomUUID().toString());
|
| 352 |
|
|
// repo.setRegisteredBy((String) session.get(LocalVocabularies.loggedInField));
|
| 353 |
|
|
|
| 354 |
|
|
if (datatype.equals("opendoar") || datatype.equals("re3data")) {
|
| 355 |
|
|
repository.setProvenanceActionClass("sysimport:crosswalk:entityregistry");
|
| 356 |
|
|
} else if (datatype.equals("journal")) {
|
| 357 |
|
|
repository.setProvenanceActionClass("user:insert");
|
| 358 |
|
|
repository.setCollectedFrom("infrastruct_::openaire");
|
| 359 |
|
|
if (repository.getIssn() != null && repository.getIssn().length() == 0)
|
| 360 |
|
|
repository.setIssn(com.unboundid.util.Base64.encode(repository.getOfficialName()).substring(0, 8));
|
| 361 |
|
|
repository.setId("openaire____::issn" + repository.getIssn());
|
| 362 |
|
|
repository.setNamespacePrefix("issn" + repository.getIssn());
|
| 363 |
|
|
} else if (datatype.equals("aggregator")) {
|
| 364 |
|
|
repository.setProvenanceActionClass("user:insert");
|
| 365 |
|
|
repository.setCollectedFrom("infrastruct_::openaire");
|
| 366 |
|
|
repository.setId("openaire____::" + com.unboundid.util.Base64.encode(repository.getOfficialName()));
|
| 367 |
|
|
repository.setNamespacePrefix(Normalizer.normalize(repository.getOfficialName().toLowerCase().replace(" ", "_"), Normalizer.Form.NFD).replaceAll("[^a-zA-Z0-9]", ""));
|
| 368 |
|
|
if (repository.getNamespacePrefix().length() > 12) {
|
| 369 |
|
|
repository.setNamespacePrefix(repository.getNamespacePrefix().substring(0, 12));
|
| 370 |
|
|
} else {
|
| 371 |
|
|
while (repository.getNamespacePrefix().length() < 12)
|
| 372 |
|
|
repository.setNamespacePrefix(repository.getNamespacePrefix().concat("_"));
|
| 373 |
49960
|
panagiotis
|
}
|
| 374 |
|
|
}
|
| 375 |
49963
|
panagiotis
|
return repository;
|
| 376 |
49960
|
panagiotis
|
}
|
| 377 |
|
|
|
| 378 |
49963
|
panagiotis
|
private void updateInterface(String datatype,RepositoryInterface iFace) {
|
| 379 |
|
|
//TODO call update base url
|
| 380 |
|
|
//((DatasourceManagerService) this.dmService.getService()).updateBaseUrl(repo.getId(), iFace.getId(), iFace.getBaseUrl());
|
| 381 |
|
|
|
| 382 |
|
|
if (!iFace.getAccessSet().isEmpty()) {
|
| 383 |
|
|
LOGGER.debug("set not empty: " + iFace.getAccessSet());
|
| 384 |
|
|
//TODO call update method for access params
|
| 385 |
|
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "set", iFace.getAccessSet(), false);
|
| 386 |
|
|
} else {
|
| 387 |
|
|
//TODO call deleteAccessParamOrExtraField
|
| 388 |
|
|
//((DatasourceManagerService) this.dmService.getService()).deleteAccessParamOrExtraField(repo.getId(), iFace.getId(), "set");
|
| 389 |
|
|
}
|
| 390 |
|
|
//TODO update content description
|
| 391 |
|
|
//((DatasourceManagerService) this.dmService.getService()).updateContentDescription(repo.getId(), iFace.getId(), "metadata");
|
| 392 |
|
|
if (datatype.equals("re3data")) {
|
| 393 |
|
|
//TODO call update access params
|
| 394 |
|
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_datacite", false);
|
| 395 |
|
|
iFace.setAccessFormat("oai_datacite");
|
| 396 |
|
|
} else {
|
| 397 |
|
|
//TODO call update access params
|
| 398 |
|
|
//((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_dc", false);
|
| 399 |
|
|
iFace.setAccessFormat("oai_dc");
|
| 400 |
|
|
}
|
| 401 |
|
|
|
| 402 |
|
|
}
|
| 403 |
|
|
|
| 404 |
|
|
private RepositoryInterface createRepositoryInterface(Repository repo, RepositoryInterface iFace, String datatype) {
|
| 405 |
|
|
|
| 406 |
|
|
iFace.setContentDescription("metadata");
|
| 407 |
|
|
iFace.setCompliance("UNKNOWN");
|
| 408 |
|
|
if (datatype.equals("re3data")) {
|
| 409 |
|
|
iFace.setAccessFormat("oai_datacite");
|
| 410 |
|
|
} else {
|
| 411 |
|
|
iFace.setAccessFormat("oai_dc");
|
| 412 |
|
|
}
|
| 413 |
|
|
|
| 414 |
|
|
if (repo.getDatasourceClass() != null && !repo.getDatasourceClass().isEmpty()) {
|
| 415 |
|
|
iFace.setTypology(repo.getDatasourceClass());
|
| 416 |
|
|
} else if (datatype.equalsIgnoreCase("journal")) {
|
| 417 |
|
|
iFace.setTypology("pubsrepository::journal");
|
| 418 |
|
|
} else if (datatype.equalsIgnoreCase("aggregator")) {
|
| 419 |
|
|
iFace.setTypology("aggregator::pubsrepository::unknown");
|
| 420 |
|
|
} else if (datatype.equalsIgnoreCase("opendoar")) {
|
| 421 |
|
|
iFace.setTypology("pubsrepository::unknown");
|
| 422 |
|
|
} else if (datatype.equalsIgnoreCase("re3data")) {
|
| 423 |
|
|
iFace.setTypology("datarepository::unknown");
|
| 424 |
|
|
}
|
| 425 |
|
|
|
| 426 |
|
|
iFace.setRemovable(true);
|
| 427 |
|
|
iFace.setAccessProtocol("oai");
|
| 428 |
|
|
iFace.setMetadataIdentifierPath("//*[local-name()='header']/*[local-name()='identifier']");
|
| 429 |
|
|
iFace.setId("api_________::" + repo.getId() + "::" + UUID.randomUUID().toString().substring(0, 8));
|
| 430 |
|
|
if (iFace.getAccessSet().isEmpty()) {
|
| 431 |
|
|
LOGGER.debug("set is empty: " + iFace.getAccessSet());
|
| 432 |
|
|
iFace.removeAccessSet();
|
| 433 |
|
|
}
|
| 434 |
|
|
return iFace;
|
| 435 |
|
|
}
|
| 436 |
|
|
|
| 437 |
49960
|
panagiotis
|
private void storeRepository(Repository repository) throws JSONException {
|
| 438 |
|
|
|
| 439 |
49963
|
panagiotis
|
Date utilDate = new Date();
|
| 440 |
|
|
Timestamp date = new Timestamp(utilDate.getTime());
|
| 441 |
|
|
repository.setDateOfCollection(date);
|
| 442 |
|
|
repository.setAggregator("OPENAIRE");
|
| 443 |
|
|
|
| 444 |
49397
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 445 |
|
|
.fromHttpUrl(baseAddress + "/ds/add/")
|
| 446 |
|
|
.build()
|
| 447 |
|
|
.encode();
|
| 448 |
49908
|
panagiotis
|
try {
|
| 449 |
|
|
LOGGER.debug("Repository equals : " + Converter.repositoryObjectToJson(repository));
|
| 450 |
|
|
}catch (Exception e){
|
| 451 |
|
|
LOGGER.debug("JSON exception ", e);
|
| 452 |
|
|
throw e;
|
| 453 |
|
|
}
|
| 454 |
49898
|
panagiotis
|
restTemplate.postForObject(uriComponents.toUri(),Converter.repositoryObjectToJson(repository),String.class);
|
| 455 |
49236
|
panagiotis
|
}
|
| 456 |
|
|
|
| 457 |
|
|
@Override
|
| 458 |
49813
|
panagiotis
|
public void deleteRepositoryInterface(@PathVariable("id") String id){
|
| 459 |
49397
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 460 |
49813
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/api/")
|
| 461 |
|
|
.path("/{id}/")
|
| 462 |
|
|
.build().expand(id).encode();
|
| 463 |
|
|
restTemplate.delete(uriComponents.toUri());
|
| 464 |
|
|
}
|
| 465 |
|
|
|
| 466 |
|
|
@Override
|
| 467 |
49963
|
panagiotis
|
public RepositoryInterface addRepositoryInterface(@RequestBody String params) throws JSONException {
|
| 468 |
49813
|
panagiotis
|
|
| 469 |
49963
|
panagiotis
|
JSONObject json_params = new JSONObject(params);
|
| 470 |
|
|
String datatype = json_params.getString("datatype");
|
| 471 |
|
|
String repoId = json_params.getString("repoId");
|
| 472 |
|
|
String json_iFace = json_params.getString("iFace");
|
| 473 |
|
|
RepositoryInterface iFace = null;
|
| 474 |
|
|
|
| 475 |
|
|
ObjectMapper mapper = new ObjectMapper();
|
| 476 |
49908
|
panagiotis
|
try {
|
| 477 |
49963
|
panagiotis
|
iFace = mapper.readValue(json_iFace, RepositoryInterface.class);
|
| 478 |
|
|
} catch (Exception e1) {
|
| 479 |
|
|
LOGGER.debug("Error parsing repository interface ", e1);
|
| 480 |
49908
|
panagiotis
|
}
|
| 481 |
|
|
|
| 482 |
49963
|
panagiotis
|
return registerRepositoryInterface(repoId,iFace,datatype);
|
| 483 |
49236
|
panagiotis
|
}
|
| 484 |
|
|
|
| 485 |
49975
|
panagiotis
|
private RepositoryInterface registerRepositoryInterface(String repoId, RepositoryInterface iFace, String datatype) {
|
| 486 |
49963
|
panagiotis
|
Repository e = null;
|
| 487 |
|
|
try {
|
| 488 |
|
|
e = this.getRepositoryById(repoId);
|
| 489 |
|
|
iFace = createRepositoryInterface(e,iFace,datatype);
|
| 490 |
|
|
|
| 491 |
49988
|
panagiotis
|
LOGGER.debug("iFace equals : " + Converter.repositoryInterfaceObjectToJson(e,iFace));
|
| 492 |
|
|
|
| 493 |
49963
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 494 |
|
|
.fromHttpUrl(baseAddress + "/ds/api/add/")
|
| 495 |
|
|
.build()
|
| 496 |
|
|
.encode();
|
| 497 |
|
|
String rs = restTemplate.postForObject(uriComponents.toUri(), Converter.repositoryInterfaceObjectToJson(e,iFace),String.class);
|
| 498 |
|
|
return Converter.jsonToRepositoryInterfaceObject(new JSONArray(rs).getJSONObject(0));
|
| 499 |
|
|
|
| 500 |
|
|
} catch (JSONException e1) {
|
| 501 |
|
|
LOGGER.debug("Error parsing json ",e1);
|
| 502 |
|
|
}
|
| 503 |
|
|
return null;
|
| 504 |
|
|
}
|
| 505 |
|
|
|
| 506 |
49236
|
panagiotis
|
@Override
|
| 507 |
|
|
public List<String> getDnetCountries() {
|
| 508 |
49770
|
panagiotis
|
LOGGER.debug("Getting dnet-countries!");
|
| 509 |
49236
|
panagiotis
|
return Converter.readFile("countries.txt");
|
| 510 |
|
|
}
|
| 511 |
|
|
|
| 512 |
|
|
@Override
|
| 513 |
|
|
public List<String> getTypologies() {
|
| 514 |
|
|
return Converter.readFile("typologies.txt");
|
| 515 |
|
|
}
|
| 516 |
|
|
|
| 517 |
|
|
@Override
|
| 518 |
49763
|
panagiotis
|
public List<Timezone> getTimezones() {
|
| 519 |
|
|
List<String> timezones = Converter.readFile("timezones.txt");
|
| 520 |
|
|
return Converter.toTimezones(timezones);
|
| 521 |
49236
|
panagiotis
|
}
|
| 522 |
|
|
|
| 523 |
|
|
@Override
|
| 524 |
|
|
public String updateManagedStatus(@RequestParam(value = "id") String id,
|
| 525 |
|
|
@RequestParam(value = "managed") String managed) {
|
| 526 |
49397
|
panagiotis
|
|
| 527 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 528 |
|
|
.fromHttpUrl(baseAddress + "/ds/manage/")
|
| 529 |
|
|
.queryParam("id",id)
|
| 530 |
|
|
.queryParam("managed",managed)
|
| 531 |
|
|
.build().encode();
|
| 532 |
|
|
|
| 533 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 534 |
49236
|
panagiotis
|
}
|
| 535 |
|
|
|
| 536 |
|
|
@Override
|
| 537 |
|
|
public String updateEnglishName(@RequestParam(value = "id") String id,
|
| 538 |
|
|
@RequestParam(value = "englishname") String englishName) {
|
| 539 |
49397
|
panagiotis
|
|
| 540 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 541 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/englishname/")
|
| 542 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
| 543 |
|
|
.queryParam("englishname",englishName)
|
| 544 |
|
|
.build().encode();
|
| 545 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 546 |
|
|
|
| 547 |
|
|
|
| 548 |
49236
|
panagiotis
|
}
|
| 549 |
|
|
|
| 550 |
|
|
@Override
|
| 551 |
|
|
public String updateLatitude(@RequestParam(value = "id") String id,
|
| 552 |
|
|
@RequestParam(value = "managed") String latitude) {
|
| 553 |
49397
|
panagiotis
|
|
| 554 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 555 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/latitude/")
|
| 556 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
| 557 |
|
|
.queryParam("latitude",latitude)
|
| 558 |
|
|
.build().encode();
|
| 559 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 560 |
49236
|
panagiotis
|
}
|
| 561 |
|
|
|
| 562 |
|
|
@Override
|
| 563 |
|
|
public String updateLongitude(@RequestParam(value = "id") String id,
|
| 564 |
|
|
@RequestParam(value = "longitude") String longitude) {
|
| 565 |
49397
|
panagiotis
|
|
| 566 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 567 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/longitude/")
|
| 568 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
| 569 |
|
|
.queryParam("longitude",longitude)
|
| 570 |
|
|
.build().encode();
|
| 571 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 572 |
49236
|
panagiotis
|
}
|
| 573 |
|
|
|
| 574 |
|
|
@Override
|
| 575 |
|
|
public String updateOfficialName(@RequestParam(value = "id") String id,
|
| 576 |
|
|
@RequestParam(value = "officialname") String officialname) {
|
| 577 |
49397
|
panagiotis
|
|
| 578 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 579 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/officialname/")
|
| 580 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
| 581 |
|
|
.queryParam("officialname",officialname)
|
| 582 |
|
|
.build().encode();
|
| 583 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 584 |
49236
|
panagiotis
|
}
|
| 585 |
|
|
|
| 586 |
|
|
@Override
|
| 587 |
49898
|
panagiotis
|
public String updateTimezone(@RequestParam(value = "id") String id,
|
| 588 |
|
|
@RequestParam(value = "timezone") String timezone) {
|
| 589 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 590 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/timezone")
|
| 591 |
49898
|
panagiotis
|
.queryParam("dsId",id)
|
| 592 |
|
|
.queryParam("timezone",timezone)
|
| 593 |
|
|
.build().encode();
|
| 594 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 595 |
|
|
}
|
| 596 |
|
|
|
| 597 |
|
|
@Override
|
| 598 |
|
|
public String updateTypology(@RequestParam(value = "id") String id,
|
| 599 |
|
|
@RequestParam(value = "typology") String typology) {
|
| 600 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 601 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/typology")
|
| 602 |
49898
|
panagiotis
|
.queryParam("dsId",id)
|
| 603 |
|
|
.queryParam("typology",typology)
|
| 604 |
|
|
.build().encode();
|
| 605 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 606 |
|
|
}
|
| 607 |
|
|
|
| 608 |
|
|
@Override
|
| 609 |
|
|
public String updateLogoUrl(@RequestParam(value = "id") String id,
|
| 610 |
|
|
@RequestParam(value = "logoUrl") String logoUrl) {
|
| 611 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 612 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/logourl")
|
| 613 |
49898
|
panagiotis
|
.queryParam("dsId",id)
|
| 614 |
|
|
.queryParam("logourl",logoUrl)
|
| 615 |
|
|
.build().encode();
|
| 616 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 617 |
|
|
}
|
| 618 |
|
|
|
| 619 |
|
|
@Override
|
| 620 |
49988
|
panagiotis
|
public String updatePlatform(String id, String platform) {
|
| 621 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 622 |
|
|
.fromHttpUrl(baseAddress + "/ds/platform")
|
| 623 |
|
|
.queryParam("dsId",id)
|
| 624 |
|
|
.queryParam("platform",platform)
|
| 625 |
|
|
.build().encode();
|
| 626 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
| 627 |
|
|
}
|
| 628 |
|
|
|
| 629 |
|
|
@Override
|
| 630 |
49763
|
panagiotis
|
public List<String> getUrlsOfUserRepos(@PathVariable("user_email") String user_email,
|
| 631 |
|
|
@PathVariable("page") String page,
|
| 632 |
|
|
@PathVariable("size") String size) throws JSONException {
|
| 633 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 634 |
|
|
.fromHttpUrl(baseAddress + "/api/baseurl/")
|
| 635 |
|
|
.path("/{page}/{size}")
|
| 636 |
|
|
.queryParam("userEmail",user_email)
|
| 637 |
|
|
.build().expand(page,size).encode();
|
| 638 |
|
|
return Arrays.asList(restTemplate.getForObject(uriComponents.toUri(), String[].class));
|
| 639 |
49236
|
panagiotis
|
}
|
| 640 |
|
|
|
| 641 |
49450
|
panagiotis
|
@Override
|
| 642 |
|
|
public List<String> getDatasourceVocabularies(@PathVariable("mode") String mode) {
|
| 643 |
|
|
|
| 644 |
|
|
List<String> resultSet = new ArrayList<>();
|
| 645 |
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
| 646 |
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
| 647 |
|
|
if (entry.getKey().contains("aggregator"))
|
| 648 |
|
|
resultSet.add(entry.getValue());
|
| 649 |
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
| 650 |
|
|
if (entry.getKey().contains("journal"))
|
| 651 |
|
|
resultSet.add(entry.getValue());
|
| 652 |
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
| 653 |
|
|
if (entry.getKey().contains("pubsrepository"))
|
| 654 |
|
|
resultSet.add(entry.getValue());
|
| 655 |
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
| 656 |
|
|
if (entry.getKey().contains("datarepository"))
|
| 657 |
|
|
resultSet.add(entry.getValue());
|
| 658 |
|
|
}
|
| 659 |
|
|
}
|
| 660 |
|
|
|
| 661 |
|
|
|
| 662 |
|
|
return resultSet;
|
| 663 |
|
|
}
|
| 664 |
|
|
|
| 665 |
|
|
private Vocabulary getVocabulary(String vocName) {
|
| 666 |
|
|
|
| 667 |
|
|
if (!vocabularyMap.containsKey(vocName)) {
|
| 668 |
|
|
vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
|
| 669 |
|
|
}
|
| 670 |
|
|
return vocabularyMap.get(vocName);
|
| 671 |
|
|
}
|
| 672 |
|
|
|
| 673 |
49790
|
panagiotis
|
|
| 674 |
|
|
@Override
|
| 675 |
|
|
public Map<String, String> getCompatibilityClasses(@PathVariable("mode") String mode) {
|
| 676 |
|
|
|
| 677 |
|
|
LOGGER.debug("Getting compatibility classes for mode: " + mode);
|
| 678 |
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
| 679 |
|
|
|
| 680 |
|
|
Map<String, String> compatibilityClasses = this.getVocabulary("dnet:compatibilityLevel").getAsMap();
|
| 681 |
|
|
boolean foundData = false;
|
| 682 |
|
|
for (Map.Entry<String, String> entry : compatibilityClasses.entrySet()) {
|
| 683 |
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_ALL))
|
| 684 |
|
|
return compatibilityClasses;
|
| 685 |
|
|
else if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA)) {
|
| 686 |
|
|
if (entry.getKey().matches("^openaire[1-9].0_data$")) {
|
| 687 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 688 |
|
|
foundData = true;
|
| 689 |
|
|
}
|
| 690 |
|
|
} else {
|
| 691 |
|
|
if (entry.getKey().matches("^openaire[1-9].0$") || entry.getKey().equals("driver"))
|
| 692 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 693 |
|
|
}
|
| 694 |
|
|
}
|
| 695 |
|
|
|
| 696 |
|
|
//TODO TO BE REMOVED WHEN VOCABULARIES ARE UPDATED
|
| 697 |
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA) && !foundData)
|
| 698 |
|
|
retMap.put("openaire2.0_data", "OpenAIRE Data (funded, referenced datasets)");
|
| 699 |
|
|
|
| 700 |
|
|
return retMap;
|
| 701 |
|
|
}
|
| 702 |
|
|
|
| 703 |
|
|
@Override
|
| 704 |
|
|
public Map<String, String> getDatasourceClasses(@PathVariable("mode") String mode) {
|
| 705 |
|
|
|
| 706 |
|
|
LOGGER.debug("Getting datasource classes for mode: " + mode);
|
| 707 |
|
|
|
| 708 |
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
| 709 |
|
|
|
| 710 |
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
| 711 |
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
| 712 |
|
|
if (entry.getKey().contains("aggregator"))
|
| 713 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 714 |
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
| 715 |
|
|
if (entry.getKey().contains("journal"))
|
| 716 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 717 |
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
| 718 |
|
|
if (entry.getKey().contains("pubsrepository"))
|
| 719 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 720 |
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
| 721 |
|
|
if (entry.getKey().contains("datarepository"))
|
| 722 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 723 |
|
|
}
|
| 724 |
|
|
}
|
| 725 |
|
|
return retMap;
|
| 726 |
|
|
|
| 727 |
|
|
}
|
| 728 |
|
|
|
| 729 |
49898
|
panagiotis
|
@Override
|
| 730 |
|
|
public String getCountryName(String countryCode) {
|
| 731 |
|
|
return inverseCountriesMap.get(countryCode);
|
| 732 |
|
|
}
|
| 733 |
|
|
|
| 734 |
49236
|
panagiotis
|
}
|