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package eu.dnetlib.enabling.datasources;
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import java.io.IOException;
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import java.sql.Array;
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import java.sql.Date;
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import java.sql.SQLException;
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import java.sql.Timestamp;
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import java.util.*;
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import java.util.stream.Collectors;
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import eu.dnetlib.enabling.datasources.common.*;
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import eu.dnetlib.miscutils.datetime.DateUtils;
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import org.apache.commons.lang.BooleanUtils;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.dom4j.Document;
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import org.dom4j.DocumentException;
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import org.dom4j.Element;
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import org.dom4j.io.SAXReader;
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import org.springframework.core.io.ClassPathResource;
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import org.springframework.core.io.Resource;
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public class DatasourceFunctions {
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private static final Log log = LogFactory.getLog(DatasourceFunctions.class);
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private static final Resource baseDsProfile = new ClassPathResource("/eu/dnetlib/enabling/datasources/templates/datasource_base.xml");
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public static SimpleDatasource mapToSimpleDs(final Map<String, Object> map) {
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final SimpleDatasource ds = new SimpleDatasource();
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ds.setId(castObject(map.get("id"), String.class));
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ds.setName(castObject(map.get("name"), String.class));
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ds.setOrigId(castObject(map.get("id"), String.class));
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ds.setTypology(castObject(map.get("typology"), String.class));
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ds.setValid(true);
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try {
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final Array arr = castObject(map.get("apis"), Array.class);
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for (Object o : (Object[]) (arr).getArray()) {
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log.info(o);
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}
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if (arr != null && ((Object[]) arr.getArray()).length > 0) {
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ds.setApis(Arrays.stream((Object[]) arr.getArray())
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.filter(Objects::nonNull)
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.map(Object::toString)
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.collect(Collectors.toSet()));
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}
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} catch (final SQLException e) {
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log.error("Error parsing array (apis)", e);
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throw new RuntimeException("Error parsing array (apis)", e);
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}
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return ds;
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}
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public static Datasource<Organization<?>, Identity> mapToDatasource(final Map<String, Object> map) {
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final Datasource<Organization<?>, Identity> ds = new Datasource<>();
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ds.setId(castObject(map.get("id"), String.class));
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ds.setOfficialname(castObject(map.get("officialname"), String.class));
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ds.setEnglishname(castObject(map.get("englishname"), String.class));
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ds.setWebsiteurl(castObject(map.get("websiteurl"), String.class));
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ds.setLogourl(castObject(map.get("logourl"), String.class));
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ds.setContactemail(castObject(map.get("contactemail"), String.class));
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ds.setLatitude(castObject(map.get("latitude"), Double.class));
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ds.setLongitude(castObject(map.get("longitude"), Double.class));
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ds.setTimezone(castObject(map.get("timezone"), String.class));
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ds.setNamespaceprefix(castObject(map.get("namespaceprefix"), String.class));
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ds.setLanguages(castObject(map.get("languages"), String.class));
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ds.setOd_contenttypes(castObject(map.get("od_contenttypes"), String.class));
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ds.setCollectedfrom(castObject(map.get("collectedfrom"), String.class));
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ds.setDateofvalidation(castObject(map.get("dateofvalidation"), Date.class));
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ds.setTypology(castObject(map.get("typology"), String.class));
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ds.setProvenanceaction(castObject(map.get("provenanceaction"), String.class));
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ds.setDateofcollection(castObject(map.get("dateofcollection"), Date.class));
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ds.setPlatform(castObject(map.get("platform"), String.class));
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ds.setActivationId(castObject(map.get("activationId"), String.class));
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ds.setDescription(castObject(map.get("description"), String.class));
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ds.setReleasestartdate(castObject(map.get("releasestartdate"), Date.class));
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ds.setReleaseenddate(castObject(map.get("releaseenddate"), Date.class));
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ds.setMissionstatementurl(castObject(map.get("missionstatementurl"), String.class));
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ds.setDataprovider(castObject(map.get("dataprovider"), Boolean.class));
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ds.setServiceprovider(castObject(map.get("serviceprovider"), Boolean.class));
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ds.setDatabaseaccesstype(castObject(map.get("databaseaccesstype"), String.class));
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ds.setDatauploadtype(castObject(map.get("datauploadtype"), String.class));
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ds.setDatabaseaccessrestriction(castObject(map.get("databaseaccessrestriction"), String.class));
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ds.setDatauploadrestriction(castObject(map.get("datauploadrestriction"), String.class));
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ds.setVersioning(castObject(map.get("versioning"), Boolean.class));
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ds.setCitationguidelineurl(castObject(map.get("citationguidelineurl"), String.class));
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ds.setQualitymanagementkind(castObject(map.get("qualitymanagementkind"), String.class));
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ds.setPidsystems(castObject(map.get("pidsystems"), String.class));
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ds.setCertificates(castObject(map.get("certificates"), String.class));
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ds.setAggregator(castObject(map.get("aggregator"), String.class));
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ds.setIssn(castObject(map.get("issn"), String.class));
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ds.setEissn(castObject(map.get("eissn"), String.class));
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ds.setLissn(castObject(map.get("lissn"), String.class));
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ds.setRegisteredby(castObject(map.get("registeredby"), String.class));
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ds.setSubjects(castObject(map.get("subjects"), String.class));
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ds.setManaged(castObject(map.get("managed"), Boolean.class));
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return ds;
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}
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public static Identity mapToDsIdentity(final Map<String, Object> map) {
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final Identity id = new Identity();
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id.setPid(castObject(map.get("pid"), String.class));
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id.setIssuertype(castObject(map.get("issuertype"), String.class));
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return id;
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}
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public static Organization<Datasource<?, ?>> mapToDsOrganization(final Map<String, Object> map) {
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final Organization<Datasource<?, ?>> org = new Organization<>();
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org.setId(castObject(map.get("id"), String.class));
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org.setLegalshortname(castObject(map.get("legalshortname"), String.class));
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org.setLegalname(castObject(map.get("legalname"), String.class));
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org.setWebsiteurl(castObject(map.get("websiteurl"), String.class));
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org.setLogourl(castObject(map.get("logourl"), String.class));
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org.setCountry(castObject(map.get("country"), String.class));
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org.setCollectedfrom(castObject(map.get("collectedfrom"), String.class));
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org.setDateofcollection(castObject(map.get("dateofcollection"), Date.class));
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org.setProvenanceaction(castObject(map.get("provenanceaction"), String.class));
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return org;
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}
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public static SearchApisEntry mapToSearchApisEntry(final Map<String, Object> map) {
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final SearchApisEntry a = new SearchApisEntry();
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a.setId(castObject(map.get("id"), String.class));
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a.setCompliance(castObject(map.get("compliance"), String.class));
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a.setActive(castObject(map.get("active"), Boolean.class));
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a.setRepoId(castObject(map.get("dsId"), String.class));
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a.setRepoName(castObject(map.get("name"), String.class));
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a.setRepoCountry(castObject(map.get("country"), String.class));
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a.setRepoPrefix(castObject(map.get("prefix"), String.class));
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a.setAggrDate(castObject(map.get("aggrDate"), String.class));
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a.setAggrTotal(castObject(map.get("aggrTotal"), Integer.class));
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a.setProtocol(castObject(map.get("protocol"), String.class));
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a.setAlternativeName(castObject(map.get("alternativeName"), String.class));
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a.setRepoOrganization(castObject(map.get("organization"), String.class));
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return a;
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}
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public static Api<ApiParam> mapToApi(final Map<String, Object> map) {
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final Api<ApiParam> a = new Api<>();
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a.setId(castObject(map.get("id"), String.class));
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a.setProtocol(castObject(map.get("protocol"), String.class));
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a.setDatasource(castObject(map.get("datasource"), String.class));
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a.setContentdescription(castObject(map.get("contentdescription"), String.class));
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a.setActive(castObject(map.get("active"), Boolean.class));
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a.setRemovable(castObject(map.get("removable"), Boolean.class));
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a.setTypology(castObject(map.get("typology"), String.class));
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a.setCompatibility(castObject(map.get("compatibility"), String.class));
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a.setCompatibilityOverrided(castObject(map.get("isCompatibilityOverrided"), Boolean.class));
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a.setMetadataIdentifierPath(castObject(map.get("metadataIdentifierPath"), String.class));
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a.setLastCollectionTotal(castObject(map.get("lastCollectionTotal"), Integer.class));
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a.setLastCollectionDate(castObject(map.get("lastCollectionDate"), Timestamp.class));
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a.setLastCollectionMdid(castObject(map.get("lastCollectionMdid"), String.class));
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a.setLastAggregationTotal(castObject(map.get("lastAggregationTotal"), Integer.class));
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a.setLastAggregationDate(castObject(map.get("lastAggregationDate"), Timestamp.class));
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a.setLastAggregationMdid(castObject(map.get("lastAggregationMdid"), String.class));
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a.setLastDownloadTotal(castObject(map.get("lastDownloadTotal"), Integer.class));
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a.setLastDownloadDate(castObject(map.get("lastDownloadDate"), Timestamp.class));
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a.setLastDownloadObjid(castObject(map.get("lastDownloadObjid"), String.class));
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a.setLastValidationJob(castObject(map.get("lastValidationJob"), String.class));
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a.setBaseurl(castObject(map.get("baseUrl"), String.class));
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try {
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final Array arr = castObject(map.get("params"), Array.class);
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if (arr != null) {
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a.setApiParams(Arrays.stream((Object[]) arr.getArray())
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.filter(Objects::nonNull)
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.map(Object::toString)
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.map(s -> {
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final ApiParam p = new ApiParamImpl();
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p.setParam(StringUtils.substringBefore(s, "="));
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p.setValue(StringUtils.substringAfter(s, "="));
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return p;
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})
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.collect(Collectors.toSet()));
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}
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} catch (final SQLException e) {
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log.error("Error parsing array params", e);
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throw new RuntimeException("Error parsing array params", e);
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}
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return a;
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}
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public static String dsToProfile(final Datasource<Organization<?>, Identity> ds, final List<Api<ApiParam>> apis, final String profId)
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throws DocumentException, IOException {
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final Document doc = new SAXReader().read(baseDsProfile.getInputStream());
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189
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setValue(doc, "//DATASOURCE_TYPE", ds.getPlatform());
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setValue(doc, "//DATASOURCE_ORIGINAL_ID", ds.getId());
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setValue(doc, "//TYPOLOGY", ds.getTypology());
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setValue(doc, "//OFFICIAL_NAME", ds.getOfficialname());
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setValue(doc, "//ENGLISH_NAME", ds.getEnglishname());
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setValue(doc, "//ICON_URI", ds.getLogourl());
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setValue(doc, "//COUNTRY", ds.getOrganizations().stream().map(Organization::getCountry).findFirst().orElse(""));
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setValue(doc, "//LONGITUDE", ds.getLongitude());
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setValue(doc, "//LATITUDE", ds.getLatitude());
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setValue(doc, "//TIMEZONE", ds.getTimezone());
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setValue(doc, "//REPOSITORY_WEBPAGE", ds.getWebsiteurl());
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setValue(doc, "//REPOSITORY_INSTITUTION", ds.getOrganizations().stream().map(Organization::getLegalname).findFirst().orElse(""));
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setValue(doc, "//ADMIN_INFO", ds.getContactemail());
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setValue(doc, "//REGISTERED_BY", ds.getRegisteredby());
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setValue(doc, "//LAST_UPDATE/@value", DateUtils.now_ISO8601());
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205
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final Element ef = (Element) doc.selectSingleNode("//EXTRA_FIELDS");
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addExtraField(ef, "OpenAireDataSourceId", ds.getId());
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addExtraField(ef, "NamespacePrefix", ds.getNamespaceprefix());
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addExtraField(ef, "VERIFIED", "NO");
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210
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addExtraField(ef, "aggregatorName", ds.getAggregator());
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addExtraField(ef, "dateOfValidation", ds.getDateofvalidation());
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212
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addExtraField(ef, "dateOfCollection", ds.getDateofcollection());
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213
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addExtraField(ef, "mergeHomonyms", "NO");
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214
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addExtraField(ef, "ACTID", ds.getActivationId());
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215
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216
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if (apis != null) {
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217
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final Element ifaces = (Element) doc.selectSingleNode("//INTERFACES");
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218
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apis.forEach(api -> addInterface(ifaces, api));
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}
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220
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return doc.asXML();
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221
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}
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222
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223
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private static void setValue(final Document doc, final String xpath, final Object value) {
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224
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if (value != null) {
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225
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doc.selectSingleNode(xpath).setText(value.toString());
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226
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}
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227
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}
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228
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229
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private static void addInterface(final Element ifaces, final Api<?> api) {
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230
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231
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final Element ifc = ifaces.addElement("INTERFACE");
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232
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ifc.addAttribute("id", api.getId());
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233
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ifc.addAttribute("label", String.format("%s (%s)",
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234
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StringUtils.defaultIfBlank(api.getTypology(), "-"),
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235
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StringUtils.defaultIfBlank(api.getCompatibility(), "-")));
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236
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ifc.addAttribute("typology", StringUtils.defaultIfBlank(api.getTypology(), ""));
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237
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ifc.addAttribute("active", "" + BooleanUtils.toBooleanDefaultIfNull(api.getActive(), false));
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238
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ifc.addAttribute("compliance", StringUtils.defaultIfBlank(api.getCompatibility(), ""));
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239
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ifc.addAttribute("contentDescription", StringUtils.defaultIfBlank(api.getContentdescription(), ""));
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240
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ifc.addAttribute("removable", "" + BooleanUtils.toBooleanDefaultIfNull(api.getRemovable(), false));
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241
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242
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final Element ap = ifc.addElement("ACCESS_PROTOCOL");
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243
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api.getApiParams().forEach(p -> ap.addAttribute(p.getParam(), p.getValue()));
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244
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ap.setText(StringUtils.defaultIfBlank(api.getProtocol(), ""));
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245
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ifc.addElement("BASE_URL").setText(StringUtils.defaultIfBlank(api.getBaseurl(), ""));
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246
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247
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if (api.isCompatibilityOverrided()) {
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248
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addInterfaceExtraField(ifc, "overriding_compliance", true);
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249
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}
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250
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251
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addInterfaceExtraField(ifc, "metadata_identifier_path", api.getMetadataIdentifierPath());
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252
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addInterfaceExtraField(ifc, "last_collection_date", api.getLastCollectionDate());
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253
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addInterfaceExtraField(ifc, "last_collection_mdId", api.getLastCollectionMdid());
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254
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addInterfaceExtraField(ifc, "last_collection_total", api.getLastCollectionTotal());
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255
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addInterfaceExtraField(ifc, "last_aggregation_date", api.getLastAggregationDate());
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256
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addInterfaceExtraField(ifc, "last_aggregation_mdId", api.getLastAggregationMdid());
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257
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addInterfaceExtraField(ifc, "last_aggregation_total", api.getLastAggregationTotal());
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258
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addInterfaceExtraField(ifc, "last_download_date", api.getLastDownloadDate());
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259
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addInterfaceExtraField(ifc, "last_download_objId", api.getLastDownloadObjid());
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260
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addInterfaceExtraField(ifc, "last_download_total", api.getLastDownloadTotal());
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261
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}
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262
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263
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private static void addExtraField(final Element parent, final String field, final Object value) {
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264
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if (value != null && StringUtils.isNotBlank(value.toString())) {
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265
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final Element f = parent.addElement("FIELD");
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266
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f.addElement("key").setText(field);
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f.addElement("value").setText(value.toString());
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268
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}
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269
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}
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270
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271
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private static void addInterfaceExtraField(final Element parent, final String field, final Object value) {
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272
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if (value != null && StringUtils.isNotBlank(value.toString())) {
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273
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final Element f = parent.addElement("INTERFACE_EXTRA_FIELD");
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274
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f.addAttribute("name", field);
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275
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f.setText(value.toString());
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276
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}
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277
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}
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278
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279
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public static Map<String, Object> dsToMap(final Datasource<Organization<?>, Identity> ds) {
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280
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final Map<String, Object> map = new HashMap<>();
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281
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282
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map.put("id", ds.getId());
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283
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map.put("officialname", ds.getOfficialname());
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284
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map.put("englishname", ds.getEnglishname());
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285
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map.put("websiteurl", ds.getWebsiteurl());
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map.put("logourl", ds.getLogourl());
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287
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map.put("contactemail", ds.getContactemail());
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288
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map.put("latitude", ds.getLatitude());
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289
|
map.put("longitude", ds.getLongitude());
|
|
290
|
map.put("timezone", ds.getTimezone());
|
|
291
|
map.put("namespaceprefix", ds.getNamespaceprefix());
|
|
292
|
map.put("languages", ds.getLanguages());
|
|
293
|
map.put("od_contenttypes", ds.getOd_contenttypes());
|
|
294
|
map.put("collectedfrom", ds.getCollectedfrom());
|
|
295
|
map.put("dateofvalidation", ds.getDateofvalidation());
|
|
296
|
map.put("typology", ds.getTypology());
|
|
297
|
map.put("provenanceaction", ds.getProvenanceaction());
|
|
298
|
map.put("platform", ds.getPlatform());
|
|
299
|
map.put("activationid", ds.getActivationId());
|
|
300
|
map.put("description", ds.getDescription());
|
|
301
|
map.put("releasestartdate", ds.getReleasestartdate());
|
|
302
|
map.put("releaseenddate", ds.getReleaseenddate());
|
|
303
|
map.put("missionstatementurl", ds.getMissionstatementurl());
|
|
304
|
map.put("dataprovider", ds.isDataprovider());
|
|
305
|
map.put("serviceprovider", ds.isServiceprovider());
|
|
306
|
map.put("databaseaccesstype", ds.getDatabaseaccesstype());
|
|
307
|
map.put("datauploadtype", ds.getDatauploadtype());
|
|
308
|
map.put("databaseaccessrestriction", ds.getDatabaseaccessrestriction());
|
|
309
|
map.put("datauploadrestriction", ds.getDatauploadrestriction());
|
|
310
|
map.put("versioning", ds.isVersioning());
|
|
311
|
map.put("citationguidelineurl", ds.getCitationguidelineurl());
|
|
312
|
map.put("qualitymanagementkind", ds.getQualitymanagementkind());
|
|
313
|
map.put("pidsystems", ds.getPidsystems());
|
|
314
|
map.put("certificates", ds.getCertificates());
|
|
315
|
map.put("aggregator", ds.getAggregator());
|
|
316
|
map.put("issn", ds.getIssn());
|
|
317
|
map.put("eissn", ds.getEissn());
|
|
318
|
map.put("lissn", ds.getLissn());
|
|
319
|
map.put("registeredby", ds.getRegisteredby());
|
|
320
|
map.put("subjects", ds.getSubjects());
|
|
321
|
map.put("managed", ds.isManaged());
|
|
322
|
|
|
323
|
return map;
|
|
324
|
}
|
|
325
|
|
|
326
|
public static Map<String, Object> orgToMap(final String dsId, final Organization<?> org) {
|
|
327
|
final Map<String, Object> map = new HashMap<>();
|
|
328
|
map.put("dsId", dsId);
|
|
329
|
map.put("orgId", org.getId());
|
|
330
|
map.put("legalname", org.getLegalname());
|
|
331
|
map.put("legalshortname", org.getLegalshortname());
|
|
332
|
map.put("websiteurl", org.getWebsiteurl());
|
|
333
|
map.put("logourl", org.getLogourl());
|
|
334
|
map.put("country", org.getCountry());
|
|
335
|
return map;
|
|
336
|
}
|
|
337
|
|
|
338
|
public static Map<String, Object> apiToMap(final Api<?> api) {
|
|
339
|
final Map<String, Object> map = new HashMap<>();
|
|
340
|
map.put("apiId", api.getId());
|
|
341
|
map.put("protocol", api.getProtocol());
|
|
342
|
map.put("baseUrl", api.getBaseurl());
|
|
343
|
map.put("dsId", api.getDatasource());
|
|
344
|
map.put("contentDescription", api.getContentdescription());
|
|
345
|
map.put("typology", api.getTypology());
|
|
346
|
map.put("compatibility", api.getCompatibility());
|
|
347
|
map.put("metadataIdentifierPath", api.getMetadataIdentifierPath());
|
|
348
|
// The other fields are not required in the INSERT operation
|
|
349
|
return map;
|
|
350
|
}
|
|
351
|
|
|
352
|
@SuppressWarnings("unchecked")
|
|
353
|
private static <T> T castObject(final Object o, final Class<T> clazz) {
|
|
354
|
if (o == null) {
|
|
355
|
return null;
|
|
356
|
}
|
|
357
|
if (clazz.isInstance(o)) {
|
|
358
|
return (T) o;
|
|
359
|
}
|
|
360
|
throw new IllegalArgumentException("Type not managed: " + clazz.getSimpleName());
|
|
361
|
}
|
|
362
|
|
|
363
|
}
|