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package eu.dnetlib.repo.manager.service.controllers;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import com.fasterxml.jackson.databind.DeserializationFeature;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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import eu.dnetlib.domain.enabling.Vocabulary;
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import eu.dnetlib.repo.manager.service.utils.Converter;
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import eu.dnetlib.repo.manager.service.utils.RequestFilter;
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import eu.dnetlib.repo.manager.shared.*;
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import gr.uoa.di.driver.enabling.vocabulary.VocabularyLoader;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.log4j.Logger;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.json.JSONObject;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.core.ParameterizedTypeReference;
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import org.springframework.http.*;
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import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
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import org.springframework.stereotype.Component;
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import org.springframework.web.bind.annotation.PathVariable;
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import org.springframework.web.bind.annotation.RequestBody;
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import org.springframework.web.bind.annotation.RequestParam;
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import org.springframework.web.client.RestClientException;
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import org.springframework.web.client.RestTemplate;
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import org.springframework.web.util.UriComponents;
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import org.springframework.web.util.UriComponentsBuilder;
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import javax.annotation.PostConstruct;
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import java.sql.Timestamp;
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import java.text.Normalizer;
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import java.util.*;
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import java.util.concurrent.ConcurrentHashMap;
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@Component
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public class RepositoryApiImpl implements RepositoryApi {
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@Value("${api.baseAddress}")
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private String baseAddress;
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private RestTemplate restTemplate = null;
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private HttpHeaders httpHeaders;
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private final String[] vocabularyNames = {"dnet:countries", "dnet:datasource_typologies", "dnet:compatibilityLevel"};
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private static final Logger LOGGER = Logger.getLogger(RepositoryApiImpl.class);
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@Value("${services.repomanager.usageStatisticsDiagramsBaseURL}")
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private String usageStatisticsDiagramsBaseURL;
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@Value("${services.repomanager.usageStatisticsNumbersBaseURL}")
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private String usageStatisticsNumbersBaseURL;
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@Autowired
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private VocabularyLoader vocabularyLoader;
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@Autowired
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private PiWikApi piWikApi;
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private Map<String, Vocabulary> vocabularyMap = new ConcurrentHashMap<String, Vocabulary>();
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private Map<String, String> countriesMap = new HashMap<>();
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private Map<String, String> inverseCountriesMap = new HashMap<>();
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@PostConstruct
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private void init() {
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LOGGER.debug("Initialization method of repository api!");
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restTemplate = new RestTemplate();
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restTemplate.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
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httpHeaders = new HttpHeaders();
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httpHeaders.set("Content-Type", "application/json");
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for (String vocName : vocabularyNames) {
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vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
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}
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Country[] countries = getCountries();
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for (Country c : countries) {
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countriesMap.put(c.getName(), c.getCode());
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inverseCountriesMap.put(c.getCode(), c.getName());
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}
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}
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@Override
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public List<String> testAggregations() throws JSONException {
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int page = 0;
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int size = 1000;
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/list/")
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.path("/{page}/{size}/")
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.build().expand(page, size).encode();
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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List<String> ids = new ArrayList<>();
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while (!rs.equals("[]")) {
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ids.addAll(getIdsWithNonEmptyAggregations(rs));
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LOGGER.debug("Checked " + (page + 1) * size + " records!");
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page += 1;
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uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/list/")
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.path("/{page}/{size}/")
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.build().expand(page, size).encode();
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rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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}
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return ids;
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}
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private List<String> getIdsWithNonEmptyAggregations(String rs) throws JSONException {
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JSONArray ids = new JSONArray(rs);
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List<String> agg_ids = new ArrayList<>();
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for (int i = 0; i < ids.length(); i++) {
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String id = ids.getString(i);
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Aggregations aggregations = getRepositoryAggregations(id);
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if (aggregations.getAggregationHistory() != null)
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agg_ids.add(id);
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}
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return agg_ids;
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}
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@Override
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public Country[] getCountries() {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/countries")
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.build().encode();
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return restTemplate.getForObject(uriComponents.toUri(), Country[].class);
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}
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@Override
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public List<Repository> getRepositoriesByCountry(@PathVariable("country") String country,
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@PathVariable("mode") String mode,
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@RequestParam(value = "managed",required=false) Boolean managed) throws JSONException {
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LOGGER.debug("Getting repositories by country!");
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int page = 0;
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int size = 100;
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String countryCode = countriesMap.get(country);
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String filterKey = "UNKNOWN";
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if (mode.equalsIgnoreCase("opendoar")) {
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filterKey = "openaire____::opendoar";
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} else if (mode.equalsIgnoreCase("re3data")) {
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filterKey = "openaire____::re3data";
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} else if (mode.equalsIgnoreCase("jour_aggr")) {
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filterKey = "infrastruct_::openaire";
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}
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LOGGER.debug("Country code equals : " + countryCode);
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LOGGER.debug("Filter mode equals : " + filterKey);
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/search/country/")
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.path("/{page}/{size}/")
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.queryParam("country", countryCode)
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.queryParam("managed", managed)
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.build().expand(page, size).encode();
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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List<Repository> resultSet = new ArrayList<>();
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while (jsonArray.length() > 0 ) {
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List<Repository> rep = Converter.jsonToRepositoryList(new JSONObject(rs));
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Collection<Repository> repos = this.getRepositoriesByMode(filterKey, rep);
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resultSet.addAll(repos);
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page += 1;
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uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/search/country/")
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.path("/{page}/{size}/")
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.queryParam("country", countryCode)
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.queryParam("managed", managed)
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.build().expand(page, size).encode();
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rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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}
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for (Repository r : resultSet)
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this.getRepositoryInfo(r);
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return resultSet;
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}
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199 |
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private void getRepositoryInfo(Repository r) throws JSONException {
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r.setInterfaces(this.getRepositoryInterface(r.getId()));
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r.setPiwikInfo(piWikApi.getPiwikSiteForRepo(r.getId()));
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r.setCountryName(getCountryName(r.getCountryCode()));
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}
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206 |
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private Collection<Repository> getRepositoriesByMode(String mode, List<Repository> rs) {
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207 |
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208 |
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List<Repository> reps = new ArrayList<>();
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209 |
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for (Repository r : rs) {
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if (r.getCollectedFrom().equals(mode))
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reps.add(r);
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}
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return reps;
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}
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@Override
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public List<Repository> getRepositoriesOfUser(@PathVariable("userEmail") String userEmail,
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218 |
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@PathVariable("page") String page,
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@PathVariable("size") String size) throws JSONException {
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220 |
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LOGGER.debug("Retreiving repositories of user : " + userEmail );
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222 |
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UriComponents uriComponents = UriComponentsBuilder
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223 |
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.fromHttpUrl(baseAddress + "/ds/search/")
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224 |
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.path("/{page}/{size}/")
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225 |
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.queryParam("requestSortBy","id")
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226 |
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.queryParam("order","ASCENDING")
|
227 |
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.build().expand(page, size).encode();
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228 |
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setRegisteredby(userEmail);
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231 |
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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233 |
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
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235 |
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for (Repository r : repos)
|
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this.getRepositoryInfo(r);
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237 |
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|
238 |
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return repos;
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239 |
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}
|
240 |
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241 |
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@Override
|
242 |
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public Repository getRepositoryById(@PathVariable("id") String id) throws JSONException {
|
243 |
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|
244 |
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UriComponents uriComponents = UriComponentsBuilder
|
245 |
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.fromHttpUrl(baseAddress + "/ds/get/")
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246 |
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.path("/{id}/")
|
247 |
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.build().expand(id).encode();
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248 |
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249 |
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
|
250 |
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Repository repo = Converter.jsonToRepositoryObject(new JSONObject(rs));
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251 |
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if (repo != null)
|
252 |
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getRepositoryInfo(repo);
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253 |
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return repo;
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254 |
49236
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}
|
255 |
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|
256 |
49988
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|
257 |
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@Override
|
258 |
49763
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public Aggregations getRepositoryAggregations(@PathVariable("id") String id) throws JSONException {
|
259 |
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|
260 |
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UriComponents uriComponents = UriComponentsBuilder
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261 |
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.fromHttpUrl(baseAddress + "/ds/get/")
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262 |
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.path("/{id}/")
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263 |
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.build().expand(id).encode();
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264 |
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265 |
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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266 |
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JSONObject repository = new JSONObject(rs);
|
267 |
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|
268 |
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|
Aggregations aggregations = new Aggregations();
|
269 |
49935
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|
270 |
49960
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try {
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271 |
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aggregations.setAggregationHistory(Converter.getAggregationHistoryFromJson(repository));
|
272 |
|
|
aggregations.setLastCollection(Converter.getLastCollectionFromJson(repository));
|
273 |
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|
aggregations.setLastTransformation(Converter.getLastTransformationFromJson(repository));
|
274 |
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|
return aggregations;
|
275 |
49960
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panagiotis
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} catch (JSONException e) {
|
276 |
|
|
LOGGER.debug("JSON aggregation exception ", e);
|
277 |
49935
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panagiotis
|
throw e;
|
278 |
|
|
}
|
279 |
|
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|
280 |
49763
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panagiotis
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}
|
281 |
|
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|
282 |
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|
@Override
|
283 |
49236
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panagiotis
|
public List<Repository> getRepositoriesByName(@PathVariable("name") String name,
|
284 |
|
|
@PathVariable("page") String page,
|
285 |
49362
|
panagiotis
|
@PathVariable("size") String size) throws JSONException {
|
286 |
49397
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
287 |
|
|
.fromHttpUrl(baseAddress + "/ds/search/name/")
|
288 |
|
|
.path("/{page}/{size}")
|
289 |
49960
|
panagiotis
|
.queryParam("name", name)
|
290 |
|
|
.build().expand(page, size).encode();
|
291 |
49397
|
panagiotis
|
|
292 |
|
|
String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
|
293 |
50219
|
panagiotis
|
List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
|
294 |
|
|
for (Repository r : repos)
|
295 |
|
|
getRepositoryInfo(r);
|
296 |
49898
|
panagiotis
|
return repos;
|
297 |
49236
|
panagiotis
|
}
|
298 |
|
|
|
299 |
|
|
@Override
|
300 |
49988
|
panagiotis
|
public List<RepositoryInterface> getRepositoryInterface(@PathVariable("id") String id) throws JSONException {
|
301 |
49397
|
panagiotis
|
|
302 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
303 |
49813
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/api/")
|
304 |
49397
|
panagiotis
|
.path("/{id}/")
|
305 |
|
|
.build().expand(id).encode();
|
306 |
|
|
|
307 |
49960
|
panagiotis
|
String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
|
308 |
49988
|
panagiotis
|
return Converter.jsonToRepositoryInterfaceList(new JSONArray(rs));
|
309 |
49236
|
panagiotis
|
}
|
310 |
|
|
|
311 |
|
|
@Override
|
312 |
50075
|
panagiotis
|
public void addRepository(@RequestParam("datatype") String datatype,
|
313 |
|
|
@RequestBody Repository repository) throws Exception {
|
314 |
49898
|
panagiotis
|
|
315 |
50075
|
panagiotis
|
/*JSONObject json_params = new JSONObject(params);
|
316 |
49960
|
panagiotis
|
String datatype = json_params.getString("datatype");
|
317 |
|
|
String json_repository = json_params.getString("repository");
|
318 |
50075
|
panagiotis
|
Repository repository = null;*/
|
319 |
49960
|
panagiotis
|
ObjectMapper mapper = new ObjectMapper();
|
320 |
49975
|
panagiotis
|
mapper.disable(DeserializationFeature.FAIL_ON_UNK‌​NOWN_PROPERTIES);
|
321 |
49960
|
panagiotis
|
try {
|
322 |
50075
|
panagiotis
|
String json_repo = mapper.writerWithDefaultPrettyPrinter().writeValueAsString(repository);
|
323 |
|
|
LOGGER.debug("repository -> " + json_repo);
|
324 |
|
|
// repository = mapper.readValue(json_repository, Repository.class);
|
325 |
49960
|
panagiotis
|
} catch (Exception e) {
|
326 |
|
|
LOGGER.debug("Error parsing repository ", e);
|
327 |
49975
|
panagiotis
|
throw e;
|
328 |
49960
|
panagiotis
|
}
|
329 |
49963
|
panagiotis
|
repository = this.setRepositoryFeatures(datatype,repository);
|
330 |
49960
|
panagiotis
|
|
331 |
|
|
LOGGER.debug("storing " + datatype + " repository with id: " + repository.getId());
|
332 |
49963
|
panagiotis
|
if (!datatype.equalsIgnoreCase("opendoar") && !datatype.equalsIgnoreCase("re3data")) {
|
333 |
|
|
if (datatype.equalsIgnoreCase("journal") || datatype.equalsIgnoreCase("aggregator")) {
|
334 |
|
|
LOGGER.debug("looking if " + datatype + " " + repository.getOfficialName() + " is already in datasources");
|
335 |
|
|
if (getRepositoryById(repository.getId()) != null) {
|
336 |
|
|
String retMessage = datatype + " '" + repository.getOfficialName() + "' is already in datasources.";
|
337 |
|
|
repository.getInterfaces().clear();
|
338 |
|
|
LOGGER.debug(retMessage);
|
339 |
|
|
} else {
|
340 |
|
|
LOGGER.debug(datatype + " " + repository.getOfficialName() + " is not in datasources. Inserting..");
|
341 |
49975
|
panagiotis
|
this.storeRepository(repository);
|
342 |
49960
|
panagiotis
|
}
|
343 |
|
|
}
|
344 |
49963
|
panagiotis
|
} else {
|
345 |
50075
|
panagiotis
|
this.updateRepository(repository);
|
346 |
49960
|
panagiotis
|
}
|
347 |
|
|
|
348 |
|
|
LOGGER.debug("Inserting Interfaces");
|
349 |
49963
|
panagiotis
|
Iterator var11 = repository.getInterfaces().iterator();
|
350 |
49960
|
panagiotis
|
|
351 |
|
|
while (var11.hasNext()) {
|
352 |
|
|
RepositoryInterface iFace = (RepositoryInterface) var11.next();
|
353 |
|
|
if (!iFace.getBaseUrl().isEmpty() && !iFace.getDesiredCompatibilityLevel().isEmpty()) {
|
354 |
|
|
if (iFace.getId() != null && !iFace.getId().isEmpty()) {
|
355 |
|
|
LOGGER.debug("updating iface..");
|
356 |
49963
|
panagiotis
|
this.updateInterface(datatype,iFace);
|
357 |
49960
|
panagiotis
|
LOGGER.debug("updated successfully");
|
358 |
|
|
} else {
|
359 |
|
|
LOGGER.debug("adding new iface..");
|
360 |
49975
|
panagiotis
|
this.registerRepositoryInterface(repository.getId(),iFace,datatype);
|
361 |
49963
|
panagiotis
|
}
|
362 |
|
|
}
|
363 |
|
|
}
|
364 |
|
|
}
|
365 |
49960
|
panagiotis
|
|
366 |
50075
|
panagiotis
|
private void updateRepository(Repository repository) {
|
367 |
|
|
this.updateRegisteredByValue(repository.getId(),repository.getRegisteredBy());
|
368 |
50614
|
panagiotis
|
this.updateEnglishName(repository.getId(),repository.getOfficialName(),repository.getEnglishName());
|
369 |
50075
|
panagiotis
|
this.updateLogoUrl(repository.getId(),repository.getLogoUrl());
|
370 |
|
|
this.updateTimezone(repository.getId(), String.valueOf(repository.getTimezone()));
|
371 |
|
|
//TODO update datasource type
|
372 |
|
|
}
|
373 |
|
|
|
374 |
49975
|
panagiotis
|
private void updateRegisteredByValue(String id, String registeredBy) {
|
375 |
|
|
|
376 |
|
|
LOGGER.debug("Updating registered by value with : " + registeredBy );
|
377 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
378 |
49986
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/registeredby/")
|
379 |
49975
|
panagiotis
|
.queryParam("dsId",id)
|
380 |
|
|
.queryParam("registeredBy", registeredBy)
|
381 |
|
|
.build()
|
382 |
|
|
.encode();
|
383 |
49986
|
panagiotis
|
|
384 |
49975
|
panagiotis
|
restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
385 |
|
|
}
|
386 |
|
|
|
387 |
49963
|
panagiotis
|
private Repository setRepositoryFeatures(String datatype, Repository repository) {
|
388 |
49960
|
panagiotis
|
|
389 |
49963
|
panagiotis
|
//TODO update map
|
390 |
|
|
repository.setCountryCode(countriesMap.get(repository.getCountryName()));
|
391 |
49960
|
panagiotis
|
|
392 |
49963
|
panagiotis
|
repository.setActivationId(UUID.randomUUID().toString());
|
393 |
|
|
// repo.setRegisteredBy((String) session.get(LocalVocabularies.loggedInField));
|
394 |
|
|
|
395 |
|
|
if (datatype.equals("opendoar") || datatype.equals("re3data")) {
|
396 |
|
|
repository.setProvenanceActionClass("sysimport:crosswalk:entityregistry");
|
397 |
|
|
} else if (datatype.equals("journal")) {
|
398 |
|
|
repository.setProvenanceActionClass("user:insert");
|
399 |
|
|
repository.setCollectedFrom("infrastruct_::openaire");
|
400 |
|
|
if (repository.getIssn() != null && repository.getIssn().length() == 0)
|
401 |
|
|
repository.setIssn(com.unboundid.util.Base64.encode(repository.getOfficialName()).substring(0, 8));
|
402 |
|
|
repository.setId("openaire____::issn" + repository.getIssn());
|
403 |
|
|
repository.setNamespacePrefix("issn" + repository.getIssn());
|
404 |
|
|
} else if (datatype.equals("aggregator")) {
|
405 |
|
|
repository.setProvenanceActionClass("user:insert");
|
406 |
|
|
repository.setCollectedFrom("infrastruct_::openaire");
|
407 |
|
|
repository.setId("openaire____::" + com.unboundid.util.Base64.encode(repository.getOfficialName()));
|
408 |
|
|
repository.setNamespacePrefix(Normalizer.normalize(repository.getOfficialName().toLowerCase().replace(" ", "_"), Normalizer.Form.NFD).replaceAll("[^a-zA-Z0-9]", ""));
|
409 |
|
|
if (repository.getNamespacePrefix().length() > 12) {
|
410 |
|
|
repository.setNamespacePrefix(repository.getNamespacePrefix().substring(0, 12));
|
411 |
|
|
} else {
|
412 |
|
|
while (repository.getNamespacePrefix().length() < 12)
|
413 |
|
|
repository.setNamespacePrefix(repository.getNamespacePrefix().concat("_"));
|
414 |
49960
|
panagiotis
|
}
|
415 |
|
|
}
|
416 |
49963
|
panagiotis
|
return repository;
|
417 |
49960
|
panagiotis
|
}
|
418 |
|
|
|
419 |
49963
|
panagiotis
|
private void updateInterface(String datatype,RepositoryInterface iFace) {
|
420 |
|
|
//TODO call update base url
|
421 |
|
|
//((DatasourceManagerService) this.dmService.getService()).updateBaseUrl(repo.getId(), iFace.getId(), iFace.getBaseUrl());
|
422 |
|
|
if (!iFace.getAccessSet().isEmpty()) {
|
423 |
|
|
LOGGER.debug("set not empty: " + iFace.getAccessSet());
|
424 |
|
|
//TODO call update method for access params
|
425 |
|
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "set", iFace.getAccessSet(), false);
|
426 |
|
|
} else {
|
427 |
|
|
//TODO call deleteAccessParamOrExtraField
|
428 |
|
|
//((DatasourceManagerService) this.dmService.getService()).deleteAccessParamOrExtraField(repo.getId(), iFace.getId(), "set");
|
429 |
|
|
}
|
430 |
|
|
//TODO update content description
|
431 |
|
|
//((DatasourceManagerService) this.dmService.getService()).updateContentDescription(repo.getId(), iFace.getId(), "metadata");
|
432 |
|
|
if (datatype.equals("re3data")) {
|
433 |
|
|
//TODO call update access params
|
434 |
|
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_datacite", false);
|
435 |
|
|
iFace.setAccessFormat("oai_datacite");
|
436 |
|
|
} else {
|
437 |
|
|
//TODO call update access params
|
438 |
|
|
//((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_dc", false);
|
439 |
|
|
iFace.setAccessFormat("oai_dc");
|
440 |
|
|
}
|
441 |
|
|
|
442 |
|
|
}
|
443 |
|
|
|
444 |
|
|
private RepositoryInterface createRepositoryInterface(Repository repo, RepositoryInterface iFace, String datatype) {
|
445 |
|
|
|
446 |
|
|
iFace.setContentDescription("metadata");
|
447 |
|
|
iFace.setCompliance("UNKNOWN");
|
448 |
|
|
if (datatype.equals("re3data")) {
|
449 |
|
|
iFace.setAccessFormat("oai_datacite");
|
450 |
|
|
} else {
|
451 |
|
|
iFace.setAccessFormat("oai_dc");
|
452 |
|
|
}
|
453 |
|
|
|
454 |
|
|
if (repo.getDatasourceClass() != null && !repo.getDatasourceClass().isEmpty()) {
|
455 |
|
|
iFace.setTypology(repo.getDatasourceClass());
|
456 |
|
|
} else if (datatype.equalsIgnoreCase("journal")) {
|
457 |
|
|
iFace.setTypology("pubsrepository::journal");
|
458 |
|
|
} else if (datatype.equalsIgnoreCase("aggregator")) {
|
459 |
|
|
iFace.setTypology("aggregator::pubsrepository::unknown");
|
460 |
|
|
} else if (datatype.equalsIgnoreCase("opendoar")) {
|
461 |
|
|
iFace.setTypology("pubsrepository::unknown");
|
462 |
|
|
} else if (datatype.equalsIgnoreCase("re3data")) {
|
463 |
|
|
iFace.setTypology("datarepository::unknown");
|
464 |
|
|
}
|
465 |
|
|
|
466 |
|
|
iFace.setRemovable(true);
|
467 |
|
|
iFace.setAccessProtocol("oai");
|
468 |
|
|
iFace.setMetadataIdentifierPath("//*[local-name()='header']/*[local-name()='identifier']");
|
469 |
50051
|
panagiotis
|
// iFace.setId("api_________::" + repo.getId() + "::" + UUID.randomUUID().toString().substring(0, 8));
|
470 |
49963
|
panagiotis
|
if (iFace.getAccessSet().isEmpty()) {
|
471 |
|
|
LOGGER.debug("set is empty: " + iFace.getAccessSet());
|
472 |
|
|
iFace.removeAccessSet();
|
473 |
|
|
}
|
474 |
|
|
return iFace;
|
475 |
|
|
}
|
476 |
|
|
|
477 |
49960
|
panagiotis
|
private void storeRepository(Repository repository) throws JSONException {
|
478 |
|
|
|
479 |
49963
|
panagiotis
|
Date utilDate = new Date();
|
480 |
|
|
Timestamp date = new Timestamp(utilDate.getTime());
|
481 |
|
|
repository.setDateOfCollection(date);
|
482 |
|
|
repository.setAggregator("OPENAIRE");
|
483 |
|
|
|
484 |
49397
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
485 |
|
|
.fromHttpUrl(baseAddress + "/ds/add/")
|
486 |
|
|
.build()
|
487 |
|
|
.encode();
|
488 |
50051
|
panagiotis
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
489 |
|
|
HttpEntity<String> httpEntity = new HttpEntity <String> (json_repository,httpHeaders);
|
490 |
|
|
restTemplate.postForObject(uriComponents.toUri(),httpEntity,String.class);
|
491 |
49236
|
panagiotis
|
}
|
492 |
|
|
|
493 |
|
|
@Override
|
494 |
49813
|
panagiotis
|
public void deleteRepositoryInterface(@PathVariable("id") String id){
|
495 |
49397
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
496 |
49813
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/api/")
|
497 |
|
|
.path("/{id}/")
|
498 |
|
|
.build().expand(id).encode();
|
499 |
|
|
restTemplate.delete(uriComponents.toUri());
|
500 |
|
|
}
|
501 |
|
|
|
502 |
|
|
@Override
|
503 |
50075
|
panagiotis
|
public RepositoryInterface addRepositoryInterface(@RequestParam("datatype") String datatype,
|
504 |
|
|
@RequestParam("repoId") String repoId,
|
505 |
|
|
@RequestBody RepositoryInterface repositoryInterface) throws JSONException {
|
506 |
49813
|
panagiotis
|
|
507 |
50075
|
panagiotis
|
/* JSONObject json_params = new JSONObject(params);
|
508 |
|
|
// LOGGER.debug(params);
|
509 |
50051
|
panagiotis
|
//TODO iFace parameter from gui. Object to json
|
510 |
49963
|
panagiotis
|
String datatype = json_params.getString("datatype");
|
511 |
|
|
String repoId = json_params.getString("repoId");
|
512 |
|
|
String json_iFace = json_params.getString("iFace");
|
513 |
|
|
RepositoryInterface iFace = null;
|
514 |
|
|
|
515 |
|
|
ObjectMapper mapper = new ObjectMapper();
|
516 |
49908
|
panagiotis
|
try {
|
517 |
49963
|
panagiotis
|
iFace = mapper.readValue(json_iFace, RepositoryInterface.class);
|
518 |
|
|
} catch (Exception e1) {
|
519 |
|
|
LOGGER.debug("Error parsing repository interface ", e1);
|
520 |
50075
|
panagiotis
|
}*/
|
521 |
|
|
return registerRepositoryInterface(repoId,repositoryInterface,datatype);
|
522 |
49236
|
panagiotis
|
}
|
523 |
|
|
|
524 |
49975
|
panagiotis
|
private RepositoryInterface registerRepositoryInterface(String repoId, RepositoryInterface iFace, String datatype) {
|
525 |
49963
|
panagiotis
|
Repository e = null;
|
526 |
|
|
try {
|
527 |
|
|
e = this.getRepositoryById(repoId);
|
528 |
|
|
iFace = createRepositoryInterface(e,iFace,datatype);
|
529 |
50051
|
panagiotis
|
ObjectMapper mapper = new ObjectMapper();
|
530 |
49963
|
panagiotis
|
|
531 |
50051
|
panagiotis
|
String json_interface = Converter.repositoryInterfaceObjectToJson(e,iFace);
|
532 |
|
|
LOGGER.debug("iFace equals -> " + json_interface);
|
533 |
49963
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
534 |
|
|
.fromHttpUrl(baseAddress + "/ds/api/add/")
|
535 |
|
|
.build()
|
536 |
|
|
.encode();
|
537 |
|
|
|
538 |
50051
|
panagiotis
|
|
539 |
|
|
HttpEntity<String> httpEntity = new HttpEntity <String> (json_interface,httpHeaders);
|
540 |
|
|
restTemplate.postForObject(uriComponents.toUri(),httpEntity,String.class);
|
541 |
|
|
return iFace;
|
542 |
|
|
|
543 |
49963
|
panagiotis
|
} catch (JSONException e1) {
|
544 |
|
|
LOGGER.debug("Error parsing json ",e1);
|
545 |
|
|
}
|
546 |
|
|
return null;
|
547 |
|
|
}
|
548 |
|
|
|
549 |
49236
|
panagiotis
|
@Override
|
550 |
|
|
public List<String> getDnetCountries() {
|
551 |
49770
|
panagiotis
|
LOGGER.debug("Getting dnet-countries!");
|
552 |
49236
|
panagiotis
|
return Converter.readFile("countries.txt");
|
553 |
|
|
}
|
554 |
|
|
|
555 |
|
|
@Override
|
556 |
|
|
public List<String> getTypologies() {
|
557 |
|
|
return Converter.readFile("typologies.txt");
|
558 |
|
|
}
|
559 |
|
|
|
560 |
|
|
@Override
|
561 |
49763
|
panagiotis
|
public List<Timezone> getTimezones() {
|
562 |
|
|
List<String> timezones = Converter.readFile("timezones.txt");
|
563 |
|
|
return Converter.toTimezones(timezones);
|
564 |
49236
|
panagiotis
|
}
|
565 |
|
|
|
566 |
|
|
@Override
|
567 |
|
|
public String updateManagedStatus(@RequestParam(value = "id") String id,
|
568 |
|
|
@RequestParam(value = "managed") String managed) {
|
569 |
49397
|
panagiotis
|
|
570 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
571 |
|
|
.fromHttpUrl(baseAddress + "/ds/manage/")
|
572 |
|
|
.queryParam("id",id)
|
573 |
|
|
.queryParam("managed",managed)
|
574 |
|
|
.build().encode();
|
575 |
|
|
|
576 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
577 |
49236
|
panagiotis
|
}
|
578 |
|
|
|
579 |
|
|
@Override
|
580 |
|
|
public String updateEnglishName(@RequestParam(value = "id") String id,
|
581 |
50614
|
panagiotis
|
@RequestParam(value = "officialName") String officialName,
|
582 |
49236
|
panagiotis
|
@RequestParam(value = "englishname") String englishName) {
|
583 |
49397
|
panagiotis
|
|
584 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
585 |
50614
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/name/")
|
586 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
587 |
50614
|
panagiotis
|
.queryParam("officialname",officialName)
|
588 |
49397
|
panagiotis
|
.queryParam("englishname",englishName)
|
589 |
|
|
.build().encode();
|
590 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
591 |
|
|
|
592 |
|
|
|
593 |
49236
|
panagiotis
|
}
|
594 |
|
|
|
595 |
|
|
@Override
|
596 |
|
|
public String updateLatitude(@RequestParam(value = "id") String id,
|
597 |
50570
|
panagiotis
|
@RequestParam(value = "latitude") String latitude) {
|
598 |
49397
|
panagiotis
|
|
599 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
600 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/latitude/")
|
601 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
602 |
|
|
.queryParam("latitude",latitude)
|
603 |
|
|
.build().encode();
|
604 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
605 |
49236
|
panagiotis
|
}
|
606 |
|
|
|
607 |
|
|
@Override
|
608 |
|
|
public String updateLongitude(@RequestParam(value = "id") String id,
|
609 |
|
|
@RequestParam(value = "longitude") String longitude) {
|
610 |
49397
|
panagiotis
|
|
611 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
612 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/longitude/")
|
613 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
614 |
|
|
.queryParam("longitude",longitude)
|
615 |
|
|
.build().encode();
|
616 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
617 |
49236
|
panagiotis
|
}
|
618 |
|
|
|
619 |
|
|
@Override
|
620 |
|
|
public String updateOfficialName(@RequestParam(value = "id") String id,
|
621 |
|
|
@RequestParam(value = "officialname") String officialname) {
|
622 |
49397
|
panagiotis
|
|
623 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
624 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/officialname/")
|
625 |
49397
|
panagiotis
|
.queryParam("dsId",id)
|
626 |
|
|
.queryParam("officialname",officialname)
|
627 |
|
|
.build().encode();
|
628 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
629 |
49236
|
panagiotis
|
}
|
630 |
|
|
|
631 |
|
|
@Override
|
632 |
49898
|
panagiotis
|
public String updateTimezone(@RequestParam(value = "id") String id,
|
633 |
|
|
@RequestParam(value = "timezone") String timezone) {
|
634 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
635 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/timezone")
|
636 |
49898
|
panagiotis
|
.queryParam("dsId",id)
|
637 |
|
|
.queryParam("timezone",timezone)
|
638 |
|
|
.build().encode();
|
639 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
640 |
|
|
}
|
641 |
|
|
|
642 |
|
|
@Override
|
643 |
|
|
public String updateTypology(@RequestParam(value = "id") String id,
|
644 |
|
|
@RequestParam(value = "typology") String typology) {
|
645 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
646 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/typology")
|
647 |
49898
|
panagiotis
|
.queryParam("dsId",id)
|
648 |
|
|
.queryParam("typology",typology)
|
649 |
|
|
.build().encode();
|
650 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
651 |
|
|
}
|
652 |
|
|
|
653 |
|
|
@Override
|
654 |
|
|
public String updateLogoUrl(@RequestParam(value = "id") String id,
|
655 |
|
|
@RequestParam(value = "logoUrl") String logoUrl) {
|
656 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
657 |
49975
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/logourl")
|
658 |
49898
|
panagiotis
|
.queryParam("dsId",id)
|
659 |
|
|
.queryParam("logourl",logoUrl)
|
660 |
|
|
.build().encode();
|
661 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
662 |
|
|
}
|
663 |
|
|
|
664 |
|
|
@Override
|
665 |
49988
|
panagiotis
|
public String updatePlatform(String id, String platform) {
|
666 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
667 |
|
|
.fromHttpUrl(baseAddress + "/ds/platform")
|
668 |
|
|
.queryParam("dsId",id)
|
669 |
|
|
.queryParam("platform",platform)
|
670 |
|
|
.build().encode();
|
671 |
|
|
return restTemplate.postForObject(uriComponents.toUri(), null,String.class);
|
672 |
|
|
}
|
673 |
|
|
|
674 |
|
|
@Override
|
675 |
50614
|
panagiotis
|
public List<String> getUrlsOfUserRepos(@PathVariable("user_email") String userEmail,
|
676 |
49763
|
panagiotis
|
@PathVariable("page") String page,
|
677 |
|
|
@PathVariable("size") String size) throws JSONException {
|
678 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
679 |
|
|
.fromHttpUrl(baseAddress + "/api/baseurl/")
|
680 |
|
|
.path("/{page}/{size}")
|
681 |
|
|
.build().expand(page,size).encode();
|
682 |
50614
|
panagiotis
|
|
683 |
|
|
|
684 |
|
|
RequestFilter requestFilter = new RequestFilter();
|
685 |
|
|
requestFilter.setRegisteredby(userEmail);
|
686 |
|
|
return Arrays.asList(restTemplate.postForObject(uriComponents.toUri(),requestFilter, String[].class));
|
687 |
49236
|
panagiotis
|
}
|
688 |
|
|
|
689 |
49450
|
panagiotis
|
@Override
|
690 |
|
|
public List<String> getDatasourceVocabularies(@PathVariable("mode") String mode) {
|
691 |
|
|
|
692 |
|
|
List<String> resultSet = new ArrayList<>();
|
693 |
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
694 |
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
695 |
|
|
if (entry.getKey().contains("aggregator"))
|
696 |
|
|
resultSet.add(entry.getValue());
|
697 |
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
698 |
|
|
if (entry.getKey().contains("journal"))
|
699 |
|
|
resultSet.add(entry.getValue());
|
700 |
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
701 |
|
|
if (entry.getKey().contains("pubsrepository"))
|
702 |
|
|
resultSet.add(entry.getValue());
|
703 |
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
704 |
|
|
if (entry.getKey().contains("datarepository"))
|
705 |
|
|
resultSet.add(entry.getValue());
|
706 |
|
|
}
|
707 |
|
|
}
|
708 |
|
|
|
709 |
|
|
|
710 |
|
|
return resultSet;
|
711 |
|
|
}
|
712 |
|
|
|
713 |
|
|
private Vocabulary getVocabulary(String vocName) {
|
714 |
|
|
|
715 |
|
|
if (!vocabularyMap.containsKey(vocName)) {
|
716 |
|
|
vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
|
717 |
|
|
}
|
718 |
|
|
return vocabularyMap.get(vocName);
|
719 |
|
|
}
|
720 |
|
|
|
721 |
49790
|
panagiotis
|
|
722 |
|
|
@Override
|
723 |
|
|
public Map<String, String> getCompatibilityClasses(@PathVariable("mode") String mode) {
|
724 |
|
|
|
725 |
|
|
LOGGER.debug("Getting compatibility classes for mode: " + mode);
|
726 |
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
727 |
|
|
|
728 |
|
|
Map<String, String> compatibilityClasses = this.getVocabulary("dnet:compatibilityLevel").getAsMap();
|
729 |
|
|
boolean foundData = false;
|
730 |
|
|
for (Map.Entry<String, String> entry : compatibilityClasses.entrySet()) {
|
731 |
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_ALL))
|
732 |
|
|
return compatibilityClasses;
|
733 |
|
|
else if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA)) {
|
734 |
|
|
if (entry.getKey().matches("^openaire[1-9].0_data$")) {
|
735 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
736 |
|
|
foundData = true;
|
737 |
|
|
}
|
738 |
|
|
} else {
|
739 |
|
|
if (entry.getKey().matches("^openaire[1-9].0$") || entry.getKey().equals("driver"))
|
740 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
741 |
|
|
}
|
742 |
|
|
}
|
743 |
|
|
|
744 |
|
|
//TODO TO BE REMOVED WHEN VOCABULARIES ARE UPDATED
|
745 |
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA) && !foundData)
|
746 |
|
|
retMap.put("openaire2.0_data", "OpenAIRE Data (funded, referenced datasets)");
|
747 |
|
|
|
748 |
|
|
return retMap;
|
749 |
|
|
}
|
750 |
|
|
|
751 |
|
|
@Override
|
752 |
|
|
public Map<String, String> getDatasourceClasses(@PathVariable("mode") String mode) {
|
753 |
|
|
|
754 |
|
|
LOGGER.debug("Getting datasource classes for mode: " + mode);
|
755 |
|
|
|
756 |
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
757 |
|
|
|
758 |
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
759 |
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
760 |
|
|
if (entry.getKey().contains("aggregator"))
|
761 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
762 |
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
763 |
|
|
if (entry.getKey().contains("journal"))
|
764 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
765 |
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
766 |
|
|
if (entry.getKey().contains("pubsrepository"))
|
767 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
768 |
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
769 |
|
|
if (entry.getKey().contains("datarepository"))
|
770 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
771 |
|
|
}
|
772 |
|
|
}
|
773 |
|
|
return retMap;
|
774 |
|
|
|
775 |
|
|
}
|
776 |
|
|
|
777 |
49898
|
panagiotis
|
@Override
|
778 |
|
|
public String getCountryName(String countryCode) {
|
779 |
|
|
return inverseCountriesMap.get(countryCode);
|
780 |
|
|
}
|
781 |
|
|
|
782 |
50570
|
panagiotis
|
@Override
|
783 |
|
|
public MetricsInfo getMetricsInfoForRepository(@PathVariable("repoId") String repoId) throws RepositoryServiceException {
|
784 |
|
|
try {
|
785 |
|
|
|
786 |
|
|
MetricsInfo metricsInfo = new MetricsInfo();
|
787 |
|
|
metricsInfo.setDiagramsBaseURL(this.usageStatisticsDiagramsBaseURL);
|
788 |
|
|
metricsInfo.setMetricsNumbers(getMetricsNumbers(getOpenAIREId(repoId)));
|
789 |
|
|
return metricsInfo;
|
790 |
|
|
|
791 |
|
|
} catch (Exception e) {
|
792 |
|
|
LOGGER.error("Error while getting metrics info for repository: ", e);
|
793 |
|
|
//emailUtils.reportException(e);
|
794 |
|
|
throw new RepositoryServiceException("General error", RepositoryServiceException.ErrorCode.GENERAL_ERROR);
|
795 |
|
|
}
|
796 |
|
|
}
|
797 |
|
|
|
798 |
|
|
private MetricsNumbers getMetricsNumbers(String openAIREID) throws BrokerException {
|
799 |
|
|
|
800 |
|
|
//build the uri params
|
801 |
|
|
UriComponentsBuilder builder = UriComponentsBuilder.fromHttpUrl(this.usageStatisticsNumbersBaseURL + openAIREID + "/clicks");
|
802 |
|
|
|
803 |
|
|
//create new template engine
|
804 |
|
|
RestTemplate template = new RestTemplate();
|
805 |
|
|
template.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
|
806 |
|
|
ResponseEntity<MetricsNumbers> resp;
|
807 |
|
|
try {
|
808 |
|
|
//communicate with endpoint
|
809 |
|
|
resp = template.exchange(
|
810 |
|
|
builder.build().encode().toUri(),
|
811 |
|
|
HttpMethod.GET,
|
812 |
|
|
null,
|
813 |
|
|
new ParameterizedTypeReference<MetricsNumbers>() {
|
814 |
|
|
});
|
815 |
|
|
} catch (RestClientException e) {
|
816 |
|
|
throw e;
|
817 |
|
|
}
|
818 |
|
|
|
819 |
|
|
return resp.getBody();
|
820 |
|
|
}
|
821 |
|
|
|
822 |
|
|
private String getOpenAIREId(String repoId) {
|
823 |
|
|
|
824 |
|
|
if (repoId != null && repoId.contains("::")) {
|
825 |
|
|
return repoId.split("::")[0] + "::" + DigestUtils.md5Hex(repoId.split("::")[1]);
|
826 |
|
|
}
|
827 |
|
|
|
828 |
|
|
return null;
|
829 |
|
|
}
|
830 |
|
|
|
831 |
|
|
|
832 |
49236
|
panagiotis
|
}
|