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package eu.dnetlib.enabling.datasources;
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michele.ar
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import java.io.StringWriter;
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claudio.at
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import java.util.*;
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import java.util.stream.Collectors;
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import com.google.common.collect.ImmutableMap;
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import eu.dnetlib.enabling.datasources.DatasourceManagerClients.AfterSqlUpdate;
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import eu.dnetlib.enabling.datasources.common.*;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.lang3.math.NumberUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.springframework.beans.factory.annotation.Required;
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import org.springframework.core.io.ClassPathResource;
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import org.springframework.core.io.Resource;
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import org.springframework.transaction.annotation.Transactional;
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public class LocalOpenaireDatasourceManagerImpl implements LocalOpenaireDatasourceManager {
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private DatasourceManagerClients datasourceManagerClients;
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private List<DbBrowsableField> browsableFields;
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public static final String QUERY_BASEDIR = "/eu/dnetlib/enabling/datasources/queries/";
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private static final Resource searchDsByType = new ClassPathResource(QUERY_BASEDIR + "searchDsByType.sql");
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private static final Resource searchApis = new ClassPathResource(QUERY_BASEDIR + "searchApisNormal.sql");
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private static final Resource searchApisUsingField = new ClassPathResource(QUERY_BASEDIR + "searchApisUsingField.sql");
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private static final Resource addDs = new ClassPathResource(QUERY_BASEDIR + "addDatasource.sql");
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private static final Resource addOrg = new ClassPathResource(QUERY_BASEDIR + "addOrganization.sql");
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private static final Resource deleteDs = new ClassPathResource(QUERY_BASEDIR + "deleteDatasource.sql");
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private static final Resource setActive = new ClassPathResource(QUERY_BASEDIR + "setActive.sql");
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private static final Resource setManaged = new ClassPathResource(QUERY_BASEDIR + "setManaged.sql");
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private static final Resource setCompliance = new ClassPathResource(QUERY_BASEDIR + "setCompliance.sql");
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private static final Resource overrideCompliance = new ClassPathResource(QUERY_BASEDIR + "overrideCompliance.sql");
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private static final Resource resetCompliance = new ClassPathResource(QUERY_BASEDIR + "resetCompliance.sql");
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private static final Resource setLastCollectionInfo = new ClassPathResource(QUERY_BASEDIR + "setLastCollectionInfo.sql");
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private static final Resource setLastAggregationInfo = new ClassPathResource(QUERY_BASEDIR + "setLastAggregationInfo.sql");
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private static final Resource setLastDownloadInfo = new ClassPathResource(QUERY_BASEDIR + "setLastDownloadInfo.sql");
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private static final Resource resetLastOperationsInfo = new ClassPathResource(QUERY_BASEDIR + "resetLastOperationsInfo.sql");
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private static final Resource insertApiParam = new ClassPathResource(QUERY_BASEDIR + "insertApiParam.sql");
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private static final Resource insertApi = new ClassPathResource(QUERY_BASEDIR + "insertApi.sql");
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private static final Log log = LogFactory.getLog(LocalOpenaireDatasourceManagerImpl.class);
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private static final String REPO_PROFILEID_SUFFIX = "_UmVwb3NpdG9yeVNlcnZpY2VSZXNvdXJjZXMvUmVwb3NpdG9yeVNlcnZpY2VSZXNvdXJjZVR5cGU=";
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@Override
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@Transactional(readOnly = true)
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public Set<String> listManagedDatasourceIds() throws DsmRuntimeException {
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try {
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return datasourceManagerClients.searchSQL("SELECT id FROM dsm_datasources WHERE managed = true", new HashMap<>())
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.stream()
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.map(m -> (String) m.get("id"))
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.collect(Collectors.toCollection(HashSet::new));
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} catch (final DsmException e) {
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throw new DsmRuntimeException(e);
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}
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}
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@Override
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@Transactional(readOnly = true)
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public List<SimpleDatasource> searchDatasourcesByType(final String type) throws DsmException {
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return datasourceManagerClients.searchSQL(searchDsByType, ImmutableMap.of("type", type))
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.stream()
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.map(DatasourceFunctions::mapToSimpleDs)
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.collect(Collectors.toList());
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}
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@Override
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@Transactional(readOnly = true)
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public List<? extends SearchApisEntry> searchApis(final String field, final Object value) throws DsmException {
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try {
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final StringWriter sql = new StringWriter();
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if (field.equalsIgnoreCase("__search__")) {
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sql.append(IOUtils.toString(searchApis.getInputStream()));
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} else {
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sql.append(IOUtils.toString(searchApisUsingField.getInputStream()));
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sql.append(field);
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sql.append("::text = ");
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sql.append(":value");
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}
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return datasourceManagerClients
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.searchSQL(sql.toString(), ImmutableMap.of("value", field.equalsIgnoreCase("__search__") ? "%" + value + "%" : value))
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.stream()
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.map(DatasourceFunctions::mapToSearchApisEntry)
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.collect(Collectors.toList());
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} catch (final Exception e) {
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log.error("Error searching field " + field + " - value: " + value, e);
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}
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return new ArrayList<>();
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}
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@Override
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@Transactional
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public void saveDs(final Datasource<Organization<?>, Identity> ds) throws DsmException {
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if (StringUtils.isBlank(ds.getAggregator())) {
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ds.setAggregator("OPENAIRE");
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}
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ds.setManaged(true);
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datasourceManagerClients.updateSQL(ds.getId(), addDs, AfterSqlUpdate.NONE, DatasourceFunctions.dsToMap(ds));
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if (ds.getOrganizations() != null) {
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for (final Organization<?> org : ds.getOrganizations()) {
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final Map<String, Object> orgParams = DatasourceFunctions.orgToMap(ds.getId(), org);
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datasourceManagerClients.updateSQL(ds.getId(), addOrg, AfterSqlUpdate.NONE, orgParams);
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}
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}
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datasourceManagerClients.regenerateProfile(ds.getId());
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}
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@Override
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@Transactional
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public void deleteDs(final String dsId) throws DsmException {
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datasourceManagerClients.updateSQL(fixDsId(dsId), deleteDs, AfterSqlUpdate.DELETE_DS_PROFILE, ImmutableMap.of("dsId", dsId));
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}
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@Override
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public Datasource<Organization<?>, Identity> getDs(final String dsId) throws DsmException {
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return datasourceManagerClients.getDatasourceById(fixDsId(dsId));
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}
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@Override
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public void regenerateProfiles() throws DsmException {
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datasourceManagerClients.regenerateProfiles();
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}
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@Override
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public List<Api<ApiParam>> getApis(final String dsId) throws DsmException {
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return datasourceManagerClients.getApis(fixDsId(dsId));
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}
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@Override
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public void setManaged(final String dsId, final boolean managed) throws DsmException {
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final String id = fixDsId(dsId);
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final Map<String, Object> params = new HashMap<>();
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params.put("managed", managed);
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params.put("dsId", id);
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datasourceManagerClients.updateSQL(id, setManaged, AfterSqlUpdate.UPDATE_DS_PROFILE, params);
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}
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@Override
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public boolean isManaged(final String dsId) throws DsmException {
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final String q = "SELECT * from dsm_datasources WHERE id = :dsId AND managed = true";
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return !datasourceManagerClients.searchSQL(q, ImmutableMap.of("dsId", fixDsId(dsId))).isEmpty();
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}
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@Override
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@Transactional
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public void setActive(final String dsId, final String apiId, final boolean active) throws DsmException {
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final String id = fixDsId(dsId);
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final Map<String, Object> params = new HashMap<>();
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params.put("active", active);
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params.put("apiId", apiId);
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params.put("dsId", id);
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datasourceManagerClients.updateSQL(id, setActive, AfterSqlUpdate.NONE, params);
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if (!active) {
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datasourceManagerClients.updateSQL(dsId, resetLastOperationsInfo, AfterSqlUpdate.NONE, params);
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}
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setManaged(id, true); // It also update the IS profile
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}
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@Override
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@Transactional(readOnly = true)
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public boolean isActive(final String dsId, final String apiId) throws DsmException {
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final String q = "SELECT * from dsm_api WHERE id = :apiId AND datasource = :dsId AND active = true";
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return !datasourceManagerClients.searchSQL(q, ImmutableMap.of("dsId", fixDsId(dsId), "apiId", apiId)).isEmpty();
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}
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@Override
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@Transactional(readOnly = true)
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public boolean isRemovable(final String dsId, final String apiId) throws DsmException {
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final String q = "SELECT * from dsm_api WHERE id = :apiId AND datasource = :dsId AND active != true AND removable = true";
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return !datasourceManagerClients.searchSQL(q, ImmutableMap.of("dsId", fixDsId(dsId), "apiId", apiId)).isEmpty();
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}
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@Override
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@Transactional
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public void updateCompliance(final String dsId, final String apiId, final String level, final boolean override) throws DsmException {
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final String id = fixDsId(dsId);
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if (!override) {
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datasourceManagerClients.updateSQL(id, setCompliance, AfterSqlUpdate.NONE, ImmutableMap.of("level", level, "apiId", apiId, "dsId", id));
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} else if (level != null) {
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datasourceManagerClients.updateSQL(id, overrideCompliance, AfterSqlUpdate.NONE, ImmutableMap.of("level", level, "apiId", apiId, "dsId", id));
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} else {
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datasourceManagerClients.updateSQL(id, resetCompliance, AfterSqlUpdate.NONE, ImmutableMap.of("apiId", apiId, "dsId", id));
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}
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setManaged(id, true); // It also update the IS profile
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}
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@Override
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public void setLastCollectionInfo(final String dsId, final String apiId, final String mdId, final Integer size, final Date date)
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throws DsmException {
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setLastOperationInfo(setLastCollectionInfo, fixDsId(dsId), apiId, mdId, size, date);
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}
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| 216 |
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@Override
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public void setLastAggregationInfo(final String dsId, final String apiId, final String mdId, final Integer size, final Date date)
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throws DsmException {
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| 219 |
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setLastOperationInfo(setLastAggregationInfo, fixDsId(dsId), apiId, mdId, size, date);
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}
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@Override
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public void setLastDownloadInfo(final String dsId, final String apiId, final String objId, final Integer size, final Date date)
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throws DsmException {
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| 225 |
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setLastOperationInfo(setLastDownloadInfo, fixDsId(dsId), apiId, objId, size, date);
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}
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@Transactional
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protected void setLastOperationInfo(final Resource sqlResource, final String dsId, final String apiId, final String mdId, final Integer size, final Date date)
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| 230 |
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throws DsmException {
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final Map<String, Object> params = new HashMap<>();
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| 232 |
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params.put("dsId", dsId);
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| 233 |
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params.put("apiId", apiId);
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| 234 |
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params.put("mdId", mdId);
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params.put("total", size);
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if (date != null) {
|
| 237 |
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params.put("date", new java.sql.Timestamp(date.getTime()));
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| 238 |
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}
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| 239 |
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| 240 |
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datasourceManagerClients.updateSQL(dsId, sqlResource, AfterSqlUpdate.NONE, params);
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| 241 |
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| 242 |
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setManaged(dsId, true); // It also update the IS profile
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| 243 |
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}
|
| 244 |
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| 245 |
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@Override
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| 246 |
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@Transactional
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| 247 |
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public void updateApiDetails(final String dsId,
|
| 248 |
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final String apiId,
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| 249 |
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final String metadataIdentifierPath,
|
| 250 |
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final String baseUrl,
|
| 251 |
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final Map<String, String> params)
|
| 252 |
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throws DsmException {
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| 253 |
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|
| 254 |
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final String id = fixDsId(dsId);
|
| 255 |
|
|
|
| 256 |
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// Delete old params
|
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datasourceManagerClients.updateSQL(id, "DELETE FROM dsm_apiparams WHERE api = :api", AfterSqlUpdate.NONE, ImmutableMap.of("api", apiId));
|
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|
| 259 |
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// Insert new params
|
| 260 |
|
|
for (final Map.Entry<String, String> e : params.entrySet()) {
|
| 261 |
|
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final Map<String, Object> sqlParams = ImmutableMap.of("param", e.getKey(), "value", e.getValue(), "api", apiId);
|
| 262 |
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datasourceManagerClients.updateSQL(id, insertApiParam, AfterSqlUpdate.NONE, sqlParams);
|
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}
|
| 264 |
|
|
|
| 265 |
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// Update the BaseURL
|
| 266 |
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datasourceManagerClients.updateSQL(id,
|
| 267 |
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"UPDATE dsm_api SET baseurl = :baseurl WHERE id = :api",
|
| 268 |
|
|
AfterSqlUpdate.NONE,
|
| 269 |
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ImmutableMap.of("baseurl", baseUrl, "api", apiId));
|
| 270 |
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|
| 271 |
|
|
// Update the metadata_identifier_path
|
| 272 |
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datasourceManagerClients.updateSQL(id,
|
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"UPDATE dsm_api SET metadata_identifier_path = :path WHERE id = :api",
|
| 274 |
|
|
AfterSqlUpdate.NONE,
|
| 275 |
|
|
ImmutableMap.of("path", metadataIdentifierPath, "api", apiId));
|
| 276 |
|
|
|
| 277 |
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setManaged(id, true); // It also update the IS profile
|
| 278 |
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}
|
| 279 |
|
|
|
| 280 |
|
|
@Override
|
| 281 |
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public List<? extends BrowsableField> listBrowsableFields() throws DsmException {
|
| 282 |
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return getBrowsableFields();
|
| 283 |
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}
|
| 284 |
|
|
|
| 285 |
|
|
@Override
|
| 286 |
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|
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public List<BrowseTerm> browseField(final String field) throws DsmException {
|
| 287 |
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|
michele.ar
|
final Optional<DbBrowsableField> bf = getBrowsableFields()
|
| 288 |
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|
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|
.stream()
|
| 289 |
|
|
.filter(f -> f.getId().equals(field))
|
| 290 |
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|
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|
.findFirst();
|
| 291 |
|
|
|
| 292 |
|
|
if (bf.isPresent()) {
|
| 293 |
|
|
return datasourceManagerClients.searchSQL(bf.get().getSql(), new HashMap<>())
|
| 294 |
|
|
.stream()
|
| 295 |
|
|
.filter(m -> m.get("term") != null)
|
| 296 |
|
|
.filter(m -> m.get("count") != null)
|
| 297 |
|
|
.filter(m -> StringUtils.isNotBlank(m.get("term").toString()))
|
| 298 |
|
|
.map(m -> new BrowseTermImpl(m.get("term").toString(), NumberUtils.toInt(m.get("count").toString(), 0)))
|
| 299 |
|
|
.collect(Collectors.toList());
|
| 300 |
|
|
} else {
|
| 301 |
|
|
log.error("Not browsable field:" + field);
|
| 302 |
|
|
throw new DsmException("Not browsable field:" + field);
|
| 303 |
|
|
}
|
| 304 |
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|
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|
}
|
| 305 |
|
|
|
| 306 |
|
|
@Override
|
| 307 |
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|
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|
@Transactional
|
| 308 |
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|
michele.ar
|
public void addApi(final Api<ApiParam> api) throws DsmException {
|
| 309 |
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|
michele.ar
|
|
| 310 |
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|
michele.ar
|
datasourceManagerClients.updateSQL(api.getDatasource(), insertApi, AfterSqlUpdate.NONE, DatasourceFunctions.apiToMap(api));
|
| 311 |
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|
michele.ar
|
|
| 312 |
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|
claudio.at
|
if (api.getApiParams() != null) {
|
| 313 |
|
|
api.getApiParams().forEach(p -> {
|
| 314 |
|
|
final ImmutableMap<String, Object> sqlParams = ImmutableMap.of("param", p.getParam(), "value", p.getValue(), "api", api.getId());
|
| 315 |
|
|
try {
|
| 316 |
|
|
datasourceManagerClients.updateSQL(api.getDatasource(), insertApiParam, AfterSqlUpdate.NONE, sqlParams);
|
| 317 |
|
|
} catch (final DsmException e) {
|
| 318 |
|
|
throw new RuntimeException(e);
|
| 319 |
|
|
}
|
| 320 |
|
|
});
|
| 321 |
|
|
}
|
| 322 |
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|
michele.ar
|
|
| 323 |
50435
|
michele.ar
|
setManaged(api.getDatasource(), true); // It also update the IS profile
|
| 324 |
33829
|
michele.ar
|
}
|
| 325 |
|
|
|
| 326 |
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|
michele.ar
|
@Override
|
| 327 |
50509
|
sandro.lab
|
@Transactional
|
| 328 |
50251
|
michele.ar
|
public void deleteApi(final String dsId, final String apiId) throws DsmException {
|
| 329 |
|
|
if (!isRemovable(dsId, apiId)) { throw new DsmException("The api " + apiId + " can't be deleted"); }
|
| 330 |
33829
|
michele.ar
|
|
| 331 |
49928
|
michele.ar
|
datasourceManagerClients.updateSQL(dsId, "DELETE FROM dsm_apiparams WHERE api = :api", AfterSqlUpdate.NONE, ImmutableMap.of("api", apiId));
|
| 332 |
50435
|
michele.ar
|
datasourceManagerClients.updateSQL(dsId, "DELETE FROM dsm_api WHERE id = :api", AfterSqlUpdate.NONE, ImmutableMap.of("api", apiId));
|
| 333 |
|
|
|
| 334 |
|
|
setManaged(dsId, true); // It also update the IS profile
|
| 335 |
33829
|
michele.ar
|
}
|
| 336 |
|
|
|
| 337 |
|
|
public DatasourceManagerClients getDatasourceManagerClients() {
|
| 338 |
|
|
return datasourceManagerClients;
|
| 339 |
|
|
}
|
| 340 |
|
|
|
| 341 |
50355
|
michele.ar
|
private String fixDsId(final String dsId) throws DsmException {
|
| 342 |
|
|
return dsId.endsWith(REPO_PROFILEID_SUFFIX) ? datasourceManagerClients.findDatasourceId(dsId) : dsId;
|
| 343 |
|
|
}
|
| 344 |
|
|
|
| 345 |
26600
|
sandro.lab
|
@Required
|
| 346 |
|
|
public void setDatasourceManagerClients(final DatasourceManagerClients datasourceManagerClients) {
|
| 347 |
|
|
this.datasourceManagerClients = datasourceManagerClients;
|
| 348 |
|
|
}
|
| 349 |
|
|
|
| 350 |
33829
|
michele.ar
|
public List<DbBrowsableField> getBrowsableFields() {
|
| 351 |
|
|
return browsableFields;
|
| 352 |
|
|
}
|
| 353 |
|
|
|
| 354 |
|
|
@Required
|
| 355 |
|
|
public void setBrowsableFields(final List<DbBrowsableField> browsableFields) {
|
| 356 |
|
|
this.browsableFields = browsableFields;
|
| 357 |
|
|
}
|
| 358 |
49890
|
michele.ar
|
|
| 359 |
26600
|
sandro.lab
|
}
|