1 |
42545
|
alessia.ba
|
package eu.dnetlib.data.transform.xml;
|
2 |
|
|
|
3 |
|
|
import java.lang.reflect.Type;
|
4 |
|
|
import java.util.List;
|
5 |
|
|
|
6 |
|
|
import com.google.gson.Gson;
|
7 |
|
|
import com.google.gson.reflect.TypeToken;
|
8 |
|
|
import org.apache.commons.lang.StringUtils;
|
9 |
|
|
|
10 |
48001
|
claudio.at
|
|
11 |
42545
|
alessia.ba
|
/**
|
12 |
|
|
* * <xsl:stylesheet ... xmlns:openTrials="eu.dnetlib.miscutils.functional.xml.OpenTrialsFunctions"> ... </xsl:stylesheet>
|
13 |
|
|
* Created by alessia on 13/05/16.
|
14 |
|
|
*/
|
15 |
|
|
public class OpenTrialsXsltFunctions {
|
16 |
|
|
|
17 |
|
|
/**
|
18 |
|
|
* Parses a json to get the first url item.
|
19 |
|
|
*
|
20 |
|
|
* @param jsonProvList A json string in the following format: [{"url" : "theUrl", "sourceID" : "theSourceId", "sourceName" : "theSourceName"}]
|
21 |
|
|
* @return the url value in the first object in the list
|
22 |
|
|
*/
|
23 |
48001
|
claudio.at
|
@Deprecated
|
24 |
42545
|
alessia.ba
|
public static String getMainIdentifierURL(String jsonProvList) {
|
25 |
|
|
List<JsonProv> provs = getProvs(jsonProvList);
|
26 |
|
|
for (JsonProv prov : provs) {
|
27 |
|
|
if (StringUtils.isNotBlank(prov.getUrl())) return prov.getUrl();
|
28 |
|
|
}
|
29 |
|
|
return "";
|
30 |
|
|
}
|
31 |
|
|
|
32 |
48001
|
claudio.at
|
/**
|
33 |
|
|
* Parses a Json to get the url item associated to the primary record if any
|
34 |
|
|
* @param jsonRecordsList A json string in the format [{"source_id","theSourceId","source_url","theUrlOfTheTrialForThisSource", "is_primary","typeOfTheTrial")}]
|
35 |
|
|
* @return the url value of the primary record
|
36 |
|
|
*/
|
37 |
|
|
public static String getPrimaryRecordUrl(String jsonRecordsList){
|
38 |
|
|
List<JsonRecord> records = getRecords(jsonRecordsList);
|
39 |
|
|
for (JsonRecord record : records) {
|
40 |
|
|
if(record.isIs_primary() && StringUtils.isNotBlank(record.getSource_url()))
|
41 |
|
|
return record.getSource_url();
|
42 |
|
|
}
|
43 |
|
|
if (!records.isEmpty() && StringUtils.isNotBlank(records.get(0).getSource_url())){
|
44 |
|
|
return records.get(0).getSource_url();
|
45 |
|
|
}
|
46 |
|
|
return "";
|
47 |
|
|
}
|
48 |
42545
|
alessia.ba
|
|
49 |
48001
|
claudio.at
|
/**
|
50 |
|
|
* Parses a Json to get the id of the source associated to the primary record if any
|
51 |
|
|
* @param jsonRecordsList A json string in the format [{"source_id","theSourceId","source_url","theUrlOfTheTrialForThisSource", "is_primary","typeOfTheTrial")}]
|
52 |
|
|
* @return the id of the source of the primary record
|
53 |
|
|
*/
|
54 |
|
|
public static String getPrimaryRecordIdentifier(String jsonRecordsList){
|
55 |
|
|
List<JsonRecord> records = getRecords(jsonRecordsList);
|
56 |
|
|
for (JsonRecord record : records) {
|
57 |
|
|
if(record.isIs_primary() && StringUtils.isNotBlank(record.getSource_id()))
|
58 |
|
|
return record.getSource_id();
|
59 |
|
|
}
|
60 |
|
|
if (!records.isEmpty() && StringUtils.isNotBlank(records.get(0).getSource_url())){
|
61 |
|
|
return records.get(0).getSource_id();
|
62 |
|
|
}
|
63 |
|
|
return "";
|
64 |
|
|
}
|
65 |
|
|
|
66 |
|
|
/**
|
67 |
|
|
* Parses a Json to get the list of the not primary url associated to the trial if any
|
68 |
|
|
* @param jsonRecordsList A json string in the format [{"source_id","theSourceId","source_url","theUrlOfTheTrialForThisSource", "is_primary","typeOfTheTrial")}]
|
69 |
|
|
* @return a string containing the not primary source urls divided by "@@"
|
70 |
|
|
*/
|
71 |
|
|
public static String getNotPrimaryRecordUrl(String jsonRecordsList){
|
72 |
|
|
boolean found = false;
|
73 |
|
|
String ret = "";
|
74 |
|
|
List<JsonRecord> records = getRecords(jsonRecordsList);
|
75 |
|
|
for (JsonRecord record : records) {
|
76 |
|
|
if(record.isIs_primary())
|
77 |
|
|
found = true;
|
78 |
|
|
else
|
79 |
|
|
if(StringUtils.isNotBlank(record.getSource_url()))
|
80 |
|
|
ret += record.getSource_url() + "@@";
|
81 |
|
|
}
|
82 |
|
|
if (!found && ret.length() > 0){
|
83 |
|
|
ret = ret.substring(ret.indexOf("@@")+2);
|
84 |
|
|
}
|
85 |
|
|
if(ret.endsWith("@@"))
|
86 |
|
|
ret = ret.substring(0,ret.length()-2);
|
87 |
|
|
|
88 |
|
|
return ret;
|
89 |
|
|
}
|
90 |
|
|
|
91 |
|
|
/**
|
92 |
|
|
* Parses a Json to get the names of the principal investigators of the trial if any
|
93 |
|
|
* @param jsonPeopleList A json string in the format [{"person_name", "thePersonName", "person_id","thePersonId", "person_role",thePersonRole)}]
|
94 |
|
|
* @return a string containing the names of the principal investigators divided by @@
|
95 |
|
|
*/
|
96 |
|
|
public static String getPrincipalInvestigators(String jsonPeopleList){
|
97 |
|
|
List<JsonPeople> people = getPeople(jsonPeopleList);
|
98 |
|
|
String ret ="";
|
99 |
|
|
for (JsonPeople person : people) {
|
100 |
|
|
if(StringUtils.isNotBlank(person.getPerson_role()) && (person.getPerson_role().equals("principal_investigator"))){
|
101 |
|
|
ret += conformToGuidelines(person.getPerson_name()) + "@@";
|
102 |
|
|
}
|
103 |
|
|
|
104 |
|
|
}
|
105 |
|
|
if(ret.endsWith("@@")){
|
106 |
|
|
ret=ret.substring(0,ret.length()-2);
|
107 |
|
|
}
|
108 |
|
|
return ret;
|
109 |
|
|
}
|
110 |
|
|
|
111 |
|
|
private static String conformToGuidelines(String person_name) {
|
112 |
|
|
|
113 |
|
|
if (person_name.indexOf(",") > -1)
|
114 |
|
|
person_name = person_name.substring(0,person_name.indexOf(","));
|
115 |
|
|
String[] name = person_name.split(" ");
|
116 |
|
|
person_name = name[name.length-1] + ",";
|
117 |
|
|
for(int i=0;i<name.length-1; i++)
|
118 |
|
|
person_name += " " + name[i];
|
119 |
|
|
|
120 |
|
|
return person_name;
|
121 |
|
|
}
|
122 |
|
|
|
123 |
|
|
/**
|
124 |
|
|
* Parses a Json to get the names of the organizations supporting the trial if any
|
125 |
|
|
* @param jsonOrganizationList A json string in the format [{"organization_name", "theOrganizationName", "organization_id","theOrganizationId", "organization_role",theOrganizationRole)}]
|
126 |
|
|
* @return a string containing the names and roles of the organizations
|
127 |
|
|
*/
|
128 |
|
|
public static String getTrialOrganizations(String jsonOrganizationList){
|
129 |
|
|
List<JsonOrganization> organizations = getOrganizations(jsonOrganizationList);
|
130 |
|
|
String ret ="";
|
131 |
|
|
for (JsonOrganization o : organizations) {
|
132 |
|
|
if (StringUtils.isNotBlank(o.getOrganization_id())) {
|
133 |
|
|
ret += o.getOrganization_name() + "@";
|
134 |
|
|
if (o.getOrganization_role().equalsIgnoreCase("primary_sponsor"))
|
135 |
|
|
ret += "sponsor@@";
|
136 |
|
|
else
|
137 |
|
|
ret += o.getOrganization_role() + "@@";
|
138 |
|
|
}
|
139 |
|
|
}
|
140 |
|
|
if(ret.endsWith("@@")){
|
141 |
|
|
ret=ret.substring(0,ret.length()-2);
|
142 |
|
|
}
|
143 |
|
|
return ret;
|
144 |
|
|
}
|
145 |
|
|
|
146 |
|
|
/**
|
147 |
|
|
* Parses a Json to get the names of the locations where the trial take place if any
|
148 |
|
|
* @param jsonLocationsList A json string in the format [{"location_name","theLocationName"}]
|
149 |
|
|
* @return a string containing the locations associated to the trial divided by "@@"
|
150 |
|
|
*/
|
151 |
|
|
public static String getTrialLocations(String jsonLocationsList){
|
152 |
|
|
List<JsonLocation> locations = getLocations(jsonLocationsList);
|
153 |
|
|
String ret ="";
|
154 |
|
|
for (JsonLocation l : locations) {
|
155 |
|
|
if (StringUtils.isNotBlank(l.getLocation_name()))
|
156 |
|
|
ret += l.getLocation_name() + "@@";
|
157 |
|
|
|
158 |
|
|
}
|
159 |
|
|
if(ret.endsWith("@@")){
|
160 |
|
|
ret=ret.substring(0,ret.length()-2);
|
161 |
|
|
}
|
162 |
|
|
return ret;
|
163 |
|
|
}
|
164 |
|
|
|
165 |
|
|
@Deprecated
|
166 |
42545
|
alessia.ba
|
public static List<JsonProv> getProvs(String jsonProvList) {
|
167 |
|
|
Gson gson = new Gson();
|
168 |
|
|
Type type = new TypeToken<List<JsonProv>>() {
|
169 |
|
|
}.getType();
|
170 |
|
|
return gson.fromJson(jsonProvList, type);
|
171 |
|
|
}
|
172 |
|
|
|
173 |
48001
|
claudio.at
|
public static List<JsonRecord> getRecords(String jsonRecordsList) {
|
174 |
|
|
Gson gson = new Gson();
|
175 |
|
|
Type type = new TypeToken<List<JsonRecord>>() {
|
176 |
|
|
}.getType();
|
177 |
|
|
return gson.fromJson(jsonRecordsList, type);
|
178 |
|
|
}
|
179 |
|
|
|
180 |
|
|
|
181 |
|
|
public static List<JsonPeople> getPeople(String jsonPeopleList) {
|
182 |
|
|
Gson gson = new Gson();
|
183 |
|
|
Type type = new TypeToken<List<JsonPeople>>() {
|
184 |
|
|
}.getType();
|
185 |
|
|
return gson.fromJson(jsonPeopleList, type);
|
186 |
|
|
}
|
187 |
|
|
|
188 |
|
|
public static List<JsonOrganization> getOrganizations(String jsonOrganizationsList) {
|
189 |
|
|
Gson gson = new Gson();
|
190 |
|
|
Type type = new TypeToken<List<JsonOrganization>>() {
|
191 |
|
|
}.getType();
|
192 |
|
|
return gson.fromJson(jsonOrganizationsList, type);
|
193 |
|
|
}
|
194 |
|
|
|
195 |
|
|
public static List<JsonLocation> getLocations(String jsonLocationsList) {
|
196 |
|
|
Gson gson = new Gson();
|
197 |
|
|
Type type = new TypeToken<List<JsonLocation>>() {
|
198 |
|
|
}.getType();
|
199 |
|
|
return gson.fromJson(jsonLocationsList, type);
|
200 |
|
|
}
|
201 |
|
|
|
202 |
|
|
@Deprecated
|
203 |
42545
|
alessia.ba
|
static class JsonProv {
|
204 |
|
|
|
205 |
|
|
String url, sourceId, sourceName;
|
206 |
|
|
|
207 |
|
|
public String getUrl() {
|
208 |
|
|
return url;
|
209 |
|
|
}
|
210 |
|
|
|
211 |
|
|
public void setUrl(final String url) {
|
212 |
|
|
this.url = url;
|
213 |
|
|
}
|
214 |
|
|
|
215 |
|
|
public String getSourceId() {
|
216 |
|
|
return sourceId;
|
217 |
|
|
}
|
218 |
|
|
|
219 |
|
|
public void setSourceId(final String sourceId) {
|
220 |
|
|
this.sourceId = sourceId;
|
221 |
|
|
}
|
222 |
|
|
|
223 |
|
|
public String getSourceName() {
|
224 |
|
|
return sourceName;
|
225 |
|
|
}
|
226 |
|
|
|
227 |
|
|
public void setSourceName(final String sourceName) {
|
228 |
|
|
this.sourceName = sourceName;
|
229 |
|
|
}
|
230 |
|
|
}
|
231 |
48001
|
claudio.at
|
|
232 |
|
|
static class JsonRecord{
|
233 |
|
|
String source_id, source_url;
|
234 |
|
|
boolean is_primary;
|
235 |
|
|
|
236 |
|
|
public String getSource_id() {
|
237 |
|
|
return source_id;
|
238 |
|
|
}
|
239 |
|
|
|
240 |
|
|
public String getSource_url() {
|
241 |
|
|
return source_url;
|
242 |
|
|
}
|
243 |
|
|
|
244 |
|
|
public void setSource_id(String source_id) {
|
245 |
|
|
this.source_id = source_id;
|
246 |
|
|
}
|
247 |
|
|
|
248 |
|
|
public void setSource_url(String source_url) {
|
249 |
|
|
this.source_url = source_url;
|
250 |
|
|
}
|
251 |
|
|
|
252 |
|
|
public boolean isIs_primary() {
|
253 |
|
|
return is_primary;
|
254 |
|
|
}
|
255 |
|
|
|
256 |
|
|
public void setIs_primary(final boolean is_primary) {
|
257 |
|
|
this.is_primary = is_primary;
|
258 |
|
|
}
|
259 |
|
|
}
|
260 |
|
|
|
261 |
|
|
static class JsonPeople{
|
262 |
|
|
String person_name, person_id, person_role;
|
263 |
|
|
|
264 |
|
|
public String getPerson_name() {
|
265 |
|
|
return person_name;
|
266 |
|
|
}
|
267 |
|
|
|
268 |
|
|
public void setPerson_name(String person_name) {
|
269 |
|
|
this.person_name = person_name;
|
270 |
|
|
}
|
271 |
|
|
|
272 |
|
|
public String getPerson_id() {
|
273 |
|
|
return person_id;
|
274 |
|
|
}
|
275 |
|
|
|
276 |
|
|
public void setPerson_id(String person_id) {
|
277 |
|
|
this.person_id = person_id;
|
278 |
|
|
}
|
279 |
|
|
|
280 |
|
|
public String getPerson_role() {
|
281 |
|
|
return person_role;
|
282 |
|
|
}
|
283 |
|
|
|
284 |
|
|
public void setPerson_role(String person_role) {
|
285 |
|
|
this.person_role = person_role;
|
286 |
|
|
}
|
287 |
|
|
}
|
288 |
|
|
|
289 |
|
|
static class JsonOrganization{
|
290 |
|
|
String organization_name, organization_id, organization_role;
|
291 |
|
|
|
292 |
|
|
public String getOrganization_name() {
|
293 |
|
|
return organization_name;
|
294 |
|
|
}
|
295 |
|
|
|
296 |
|
|
public void setOrganization_name(String organization_name) {
|
297 |
|
|
this.organization_name = organization_name;
|
298 |
|
|
}
|
299 |
|
|
|
300 |
|
|
public String getOrganization_id() {
|
301 |
|
|
return organization_id;
|
302 |
|
|
}
|
303 |
|
|
|
304 |
|
|
public void setOrganization_id(String organization_id) {
|
305 |
|
|
this.organization_id = organization_id;
|
306 |
|
|
}
|
307 |
|
|
|
308 |
|
|
public String getOrganization_role() {
|
309 |
|
|
return organization_role;
|
310 |
|
|
}
|
311 |
|
|
|
312 |
|
|
public void setOrganization_role(String organization_role) {
|
313 |
|
|
this.organization_role = organization_role;
|
314 |
|
|
}
|
315 |
|
|
}
|
316 |
|
|
|
317 |
|
|
static class JsonLocation{
|
318 |
|
|
String location_name;
|
319 |
|
|
|
320 |
|
|
public String getLocation_name() {
|
321 |
|
|
return location_name;
|
322 |
|
|
}
|
323 |
|
|
|
324 |
|
|
public void setLocation_name(String location_name) {
|
325 |
|
|
this.location_name = location_name;
|
326 |
|
|
}
|
327 |
|
|
}
|
328 |
42545
|
alessia.ba
|
}
|