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Revision 52912

added Mapper for tranform scholexplorer links into actionsets

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modules/dnet-mapreduce-jobs/branches/beta/src/test/java/eu/dnetlib/data/mapreduce/actions/ScholexplorerActionMapperTest.java
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package eu.dnetlib.data.mapreduce.actions;
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import com.google.gson.JsonObject;
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import com.google.gson.JsonParser;
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import eu.dnetlib.actionmanager.actions.ActionFactory;
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import eu.dnetlib.actionmanager.actions.AtomicAction;
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import eu.dnetlib.actionmanager.common.Agent;
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import eu.dnetlib.data.mapreduce.hbase.dataimport.ScholExplorerConfiguration;
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import eu.dnetlib.data.mapreduce.hbase.dataimport.ScholixToActions;
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import eu.dnetlib.data.transform.xml.AbstractDNetXsltFunctions;
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import eu.dnetlib.miscutils.datetime.DateUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.junit.Assert;
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import org.junit.Before;
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import org.junit.Test;
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import java.io.BufferedReader;
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import java.io.IOException;
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import java.io.InputStream;
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import java.io.InputStreamReader;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import static org.junit.Assert.assertEquals;
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public class ScholexplorerActionMapperTest {
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    private Map<String, ScholExplorerConfiguration> configurationMap;
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    private String setName;
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    private Agent agent;
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    private String nsPrefix;
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    private String dsName;
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    private String dsId;
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    @Before
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    public void initializeCofiguration(){
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        configurationMap= new HashMap<>();
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        configurationMap.put("issn", new ScholExplorerConfiguration(null, false));
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        configurationMap.put("openaire", new ScholExplorerConfiguration(null, false));
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        configurationMap.put("pmid", new ScholExplorerConfiguration("pmid", true,"https://www.ncbi.nlm.nih.gov/pubmed/%s"));
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        configurationMap.put("doi", new ScholExplorerConfiguration("doi", true,"http://dx.doi.org/%s"));
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        configurationMap.put("pbmid", new ScholExplorerConfiguration("pmid", true,"https://www.ncbi.nlm.nih.gov/pubmed/%s"));
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        configurationMap.put("openaire ", new ScholExplorerConfiguration(null, false));
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        configurationMap.put("pmcid", new ScholExplorerConfiguration("pmc", true,"https://europepmc.org/articles/%s"));
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        configurationMap.put("pubmedid", new ScholExplorerConfiguration("pmid", true,"https://www.ncbi.nlm.nih.gov/pubmed/%s"));
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        configurationMap.put("icpsr", new ScholExplorerConfiguration(null, false));
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        configurationMap.put("dnet", new ScholExplorerConfiguration(null, false));
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        configurationMap.put("url ", new ScholExplorerConfiguration(null, true,"%s"));
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        setName = "DLI";
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        agent= new Agent("agentId","agentName", Agent.AGENT_TYPE.service);
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        nsPrefix = "scholexplore";
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        dsName = "ScholExplorer";
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        dsId = "scholexplorer";
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    }
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    @Test
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    public void testSubString () {
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        final String dnetId ="50|dli_resolver::7b7b9a57a40818d10cf2532d71f012fa";
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        assertEquals("7b7b9a57a40818d10cf2532d71f012fa", dnetId.substring(17));
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        System.out.println(AbstractDNetXsltFunctions.md5("SNSF - Swiss National Science Foundation"));
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    }
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    @Test
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    public void testSingleScholixAction() throws IOException {
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        final InputStream is = this.getClass().getResourceAsStream("/eu/dnetlib/data/mapreduce/actions/part-00000");
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        final BufferedReader in = new BufferedReader(new InputStreamReader(is));
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//        in.readLine();
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//        in.readLine();
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        String line = in.readLine();
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        System.out.println(line);
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        final JsonParser parser = new JsonParser();
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        JsonObject root = parser.parse(line).getAsJsonObject();
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        List<AtomicAction> actions = ScholixToActions.generateActionsFromScholix(root, configurationMap, setName, agent, new ActionFactory(), nsPrefix, dsName, dsId, DateUtils.now_ISO8601());
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        actions.forEach(it-> System.out.println(String.format("%s    cf:%s    qualifier:%s", it.getTargetRowKey(), it.getTargetColumnFamily(), it.getTargetColumn())));
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    }
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    @Test
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    public void testScholixAction() throws IOException {
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        final InputStream is = this.getClass().getResourceAsStream("/eu/dnetlib/data/mapreduce/actions/part-00000");
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        final BufferedReader in = new BufferedReader(new InputStreamReader(is));
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        String line = in.readLine();
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        while (StringUtils.isNotEmpty(line)){
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            final JsonParser parser = new JsonParser();
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            JsonObject root = parser.parse(line).getAsJsonObject();
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            try {
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                List<AtomicAction> actions = ScholixToActions.generateActionsFromScholix(root, configurationMap, setName, agent, new ActionFactory(), nsPrefix, dsName, dsId, DateUtils.now_ISO8601());
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                Assert.assertNotNull(actions);
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                Assert.assertTrue(actions.size() > 0);
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            } catch (Throwable e) {
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                System.out.println(line);
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                throw (new RuntimeException(e));
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            }
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            line = in.readLine();
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        }
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    }
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}
modules/dnet-mapreduce-jobs/branches/beta/src/test/resources/eu/dnetlib/data/mapreduce/actions/part-00000
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{"publisher": ["Mammalian genome : official journal of the International Mammalian Genome Society"], "datasources": [{"completionStatus": "incomplete", "datasourceId": "r3d100010527", "datasourceName": "European Nucleotide Archive"}, {"completionStatus": "complete", "datasourceId": "dli_________::pubmed", "datasourceName": "PubMed"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::71ca0bb7cd1bf367edae9f8fff58e986", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10920245&result=sequence_release", "schema": "url"}}], "abstract": "", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "10920245"}], "author": ["Bentolila S", "Tiret L", "Fauré S", "Weissenbach J", "Bach J M", "Kessler J L", "Panthier J J"], "relatedPublications": 0, "id": "50|r3d100010527::b8772cb54a09d447f8bb023c1e5e86a3", "title": ["Assignation of highly polymorphic markers on a canine purebred pedigree."], "typology": "publication"}
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{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::66eb19bfdb1e70f17e0b7f2293a502b6", "id": {"identifier": "10.5517/ccp32d7", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::df7c3de3e453b805947094aa4dab5654", "id": {"identifier": "10.5517/ccpgbp4", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::596044649f2740dd69f86f3759c898d7", "id": {"identifier": "10.5517/ccpj92k", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "New complexes with 5(3)-(2-hydroxyphenyl)-3(5)-methylpyrazole (H(2)phpz), [Co-2(H(2)phpz)(Hphpz)(2)(phpz)(2)](.)3CH(3)CN (1), [Ni(Hphpz)(2)] (2) and [Cu(HphpZ)(2)] (3), were synthesized and structurally characterized. The ligand coordinates in the form of 3-(2-hydroxyphenyl)-5-methylpyrazole in all cases, except for one ligand in the Co-III complex, where it coordinates in the 5-(2-hydroxyphenyl)-3-methylpyrazole mode. Crystallographic analysis revealed that 1 contains two chemically and crystallographically distinct cobalt(III) ions triply bridged by one phenoxide and two pyrazolate groups, giving rise to a [Co-2(N-N)(2)O] core with a (CoCo)-Co-... distance of 3.154 angstrom. Additionally, the H(2)phpz ligand shows four different coordination modes with the metal ions, demonstrating its versatility. The dinuclear unit of 1 is stabilized by strong intramolecular N-(HO)-O-... hydrogen-bonding interactions involving the phenol oxygen atom of the H(2)phpz ligand and the N-H functionality of the pyrazole ring. The crystal structure of the isomorphous complexes 2 and 3 reveals the presence of centrosymmetric mononuclear units with the MN2O2 [M = Ni-II (2), Cu-II (3)] chromophore displaying a slightly distorted square-planar geometry. The mononuclear structures of 2 and 3 are further stabilized by intramolecular hydrogen bonds established between the acid N-H group as donor and the phenoxide group of the H(2)phpz ligand as acceptor. Spectroscopic studies, ESI-MS and cyclic voltammetry were performed, supporting the crystallographic analysis. ((c) Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2007).", "author": ["de Gelder René", "Tanase Stefania", "Viciano-Chumillas Marta", "Aromí Guillem", "Bouwman Elisabeth", "Smits Jan M. M.", "Solans Xavier", "Reedijk Jan"], "localIdentifier": [{"type": "doi", "id": "10.1002/ejic.200700313"}], "id": "50|dli_resolver::7b7b9a57a40818d10cf2532d71f012fa", "relatedPublications": 0, "date": ["2015-08-29T15:00:03Z","2015","2015-08-29"], "title": ["\"Coordination Versatility of 5(3)-(2-Hydroxyphenyl)-3(5)-methylpyrazole: Synthesis, Crystal Structure and Properties of CoIII, NiII and CuII Complexes\""], "relatedDatasets": 3}
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{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0ba3406094e50f43df2ea84264c90dc1", "id": {"identifier": "10.5517/ccswg58", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e407766d64ed4878de6f9596807f1767", "id": {"identifier": "10.5517/ccswg47", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The homoleptic [M(MeCN) 4 ] 2+  cations (M = Pd, Pt) as the tetrafluoroborato derivatives were reacted with NHEt 2 . The platinum species affords the amidino derivative {Pt[( E )-HN    C(NEt 2 )Me] 4 }[BF 4 ] 2 ,  1 , as the only detected product of the addition of the amine to the coordinated nitrile. On the contrary, for [Pd(MeCN) 4 ][BF 4 ] 2  competition between the substitution of the nitrile and addition of the amine to the nitrile group is operative: by carrying out the reaction in acetonitrile as solvent, complete conversion was obtained to the crystallographically defined {Pd[( E )-HN    C(NEt 2 )Me] 4 }[BF 4 ] 2 . Consistent with these findings, PdCl 2 (MeCN) 2  reacts with NHEt 2  in acetonitrile yielding the substitution complex PdCl 2 (NHEt 2 ) 2 , whereas the amidino complex  cis -PtCl 2 [( E )-HN    C(NEt 2 )Me] 2 ,  3  was obtained from PtCl 2 (MeCN) 2 . Complex  3  was characterized by X-ray diffractometry.", "author": ["Labella Luca", "Belli Dell’ Amico Daniela", "Samaritani Simona", "Marchetti Fabio", "Pelizzi Giancarlo", "Bacchi Alessia", "Calderazzo Fausto"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ica.2010.04.001"}], "id": "50|dli_resolver::2d27fbd31cc53e37cad82f83dda7fa86", "relatedPublications": 0, "date": [""], "title": ["\"Reactions of the homoleptic acetonitrile complexes of palladium and platinum with diethylamine\""], "relatedDatasets": 2}
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{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::ae3e5e7cbb7edbff1822a51fda4ab84d", "id": {"identifier": "q6b856", "schema": "ncbi-p"}}], "abstract": "", "title": ["Cytotoxic activities of substituted 3-(3,4,5-trimethoxybenzylidene)-1,3-dihydroindol-2-ones and studies on their mechanisms of action"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ejmech.2013.03.033"}], "id": "50|elsevier____::e463ad2b90baddd604fcb947807ef5d3", "relatedPublications": 0, "date": ["2013"], "relatedDatasets": 1}
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{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2649dbe1f417f881f145025b9d5c8dd4", "id": {"identifier": "10.5517/cc9tmwl", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "In the title dinuclear complex, [Cu2(C5H10NO2)2(C10H8N2)3(H2O)2](NO3)2·2H2O, each of the two l-valinate anions chelates a CuII center through the amino N and carboxyl­ate O atom, forming a five-membered ring. A 4,4′-bipyridine mol­ecule bridges two water-coordinated Cu atoms, each of which is connected to another 4,4′-bipyridine, giving rise to a square-pyramidal coordination geometry for the CuII centers. The dinuclear dications, nitrate anions and uncoord­inated water mol­ecules are linked into a two-dimensional structure.", "author": ["Hong Mao-Chun", "Lou Ben-Yong"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536808002109"}], "id": "50|dli_resolver::d4911d91b889dca4061caa3476fae9ca", "relatedPublications": 0, "date": [""], "title": ["\"μ-4,4′-Bipyridine-κ2N:N′-bisaqua(4,4′-bipyridine-κN)(L-valinato-κ2N,O)copper(II) dinitrate dihydrate\""], "relatedDatasets": 1}
6
{"typology": "publication", "publisher": ["SAGE Publications"], "doiRels": [{"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::78756971e26cc899d87a35252af515a6", "id": {"identifier": "10.3886/icpsr08317", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::387bc23890f424104698074088b5799d", "id": {"identifier": "10.3886/icpsr08317.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::9d489afaa17ea4887dbbb3a08301b50a", "id": {"identifier": "10.3886/icpsr09331", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::540225a7f2bd3dd444105154b7f6fcc6", "id": {"identifier": "10.3886/icpsr08317.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "All other industrialized countries have some version of a children's allowance, a grant provided to all families based on the number of children they have. In contrast, the United States provides tax deductions for children, which provide the most benefit to the rich and provide no benefit at all to most poor families. The authors argue that a children's allowance could be instituted in this country that would decrease poverty and welfare participation while not costing the federal government any additional resources. A microsimulation model shows the effects of three levels of children's allowances on government revenues, family incomes, welfare use, and labor supply.", "author": ["PHILLIPS ELIZABETH", "Meyer Daniel, R.", "Maritato Nancy, L."], "localIdentifier": [{"type": "doi", "id": "10.1177/019251391012004005"}], "id": "50|dli_resolver::b82478541ca47747248cf87b112927ed", "relatedPublications": 0, "date": [""], "title": ["The Effects of Replacing Income Tax Deductions for Children With Children's Allowances"], "relatedDatasets": 4}
7
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "references", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1314232c765f4f27d958b109667b4169", "id": {"identifier": "10.5061/dryad.3bd65", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1314232c765f4f27d958b109667b4169", "id": {"identifier": "10.5061/dryad.3bd65", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Perl Craig D.", "Niven Jeremy E."], "localIdentifier": [{"type": "doi", "id": "10.1038/srep24204"}], "id": "50|dli_resolver::237d47fb3706bca32ed3f3830db80933", "relatedPublications": 0, "date": [""], "title": ["Colony-Level Differences in the Scaling Rules Governing Wood Ant Compound Eye Structure"], "relatedDatasets": 2}
8
{"typology": "publication", "publisher": ["Parasitology research"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::52efa98a0893f745495fc21e46be7ad8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7624289&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5d72b7ab35d159055ab3b729cf6bbda8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7624289&result=noncoding_release", "schema": "url"}}], "abstract": "", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "7624289"}], "author": ["Luton K", "Johnson A M", "Gleeson M"], "relatedPublications": 0, "id": "50|r3d100010527::9e2063986720cf59ad3269d4a84a0785", "title": ["rRNA gene sequence heterogeneity among Toxoplasma gondii strains."], "relatedDatasets": 2}
9
{"typology": "publication", "publisher": ["Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::802cfc3618ac6f6c26fe1cd0f8c0489e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20207192&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::4b4d055b1618ef1521b5d79260817817", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20207192&result=sequence_release", "schema": "url"}}], "abstract": "BACKGROUND: Occupational exanthematic diseases represent an important cause of public health impact and economical losses. Among the viral exanthematic diseases, two caused by poxviruses are noteworthy: the bovine vaccinia (BV), caused by the Vaccinia virus (VACV); and the milker's nodule, in which the agent is the Pseudocowpox virus (PCPV). Both agents are zoonotic and have been associated with several cases of bovine infection. In Brazilian rural areas BV has been highly prevalent, particularly in milk herds. Farmers, milkers and their close contacts developed lesions on the hands, forearms, legs and face accompanied by several systemic symptoms. Although VACV and PCPV present with similar epidemiological and transmission patterns, no VACV and PCPV co-infection cases have to date been described. OBJECTIVES: To describe the first case of zoonotic VACV and PCVP co-infection, based on serological and molecular methods. STUDY DESIGN AND RESULTS: In this work we report a case of a Brazilian rural worker who presented with a large severely ulcerated-pustule skin lesion, associated with fever, headache, malaise, myalgia and axillary, inguinal and cervical limphadenopathy. The worker declared occupational contact with cattle that had notable injuries on their teats. Human and bovine clinical samples were collected and submitted to serological and molecular tests. PCR and phylogenetic analysis revealed the presence of VACV DNA and PCPV DNA in the patient's lesion. Serological tests indicated anti-VACV neutralizing antibodies and molecular assays showed the presence of VACV and PCPV DNA in the patient sera. VACV and PCPV also were detected in dairy cattle. CONCLUSION: Together, these results indicate a case of zoonotic VACV/PCPV co-infection. Epidemiological surveillance and appropriate medical treatment are essential for the control of both diseases, especially in the most severe cases, as described in the present study.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jcv.2010.02.001"}, {"type": "pbmid", "id": "20207192"}], "author": ["Lobato Zélia I P", "Drumond Betânia P", "Kroon Erna G", "Ferreira Paulo C", "Trindade Giliane S", "Guedes Maria I", "Bonjardim Cláudio A", "Silva-Fernandes André T", "Assis Felipe L", "Madureira Marieta", "Abrahão Jônatas S", "Turrini Filippo", "Leite Juliana A", "Coelho Luiz F L", "Fonseca Flávio G"], "relatedPublications": 0, "id": "50|r3d100010527::a8fd6fec08ec1d8da00245154f88e25b", "title": ["Human Vaccinia virus and Pseudocowpox virus co-infection: clinical description and phylogenetic characterization."], "relatedDatasets": 2}
10
{"typology": "publication", "publisher": ["Systematic and applied microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::e0642068916cbcc5c50b56984d3eacb9", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=11542149&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3c6db6c84beebcbadc10b8f2653934fc", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=11542149&result=noncoding_release", "schema": "url"}}], "abstract": "None: Sequences for the spacer regions that separate the 16S and 23S ribosomal RNA genes have been determined for four more (strategically placed) archaebacteria. These confirm the general rule that methanogens and extreme halophiles have spacers that contain a single tRNAala gene, while tRNA genes are not found in the spacer region of the true extreme thermophiles. The present study also shows that the spacer regions from the sulfate reducing Archaeglobus and the extreme thermophile Thermococcus (both of which cluster phylogenetically with the methanogens and extreme halophiles) contain each a tRNAala gene. Thus, not only all methanogens and extreme halophiles show this characteristic, but all organisms on the \"methanogen branch\" of the archaebacterial tree appear to do so. The finding of a tRNA gene in the spacer region of the extreme thermophile Thermococcus celer is the first known phenotypic property that links this organism with its phylogenetic counterparts, the methanogens, rather than with its phenotypic counterparts, the sulfur-dependent extreme thermophiles.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "11542149"}], "author": ["Woese C R", "Achenbach-Richter L"], "relatedPublications": 0, "id": "50|r3d100010527::1793df639a83dc97c209af4161f81bf0", "title": ["The ribosomal gene spacer region in archaebacteria."], "relatedDatasets": 2}
11
{"typology": "publication", "publisher": ["BMC genomics"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::e225095802d6a7d6a71bac6de3e07111", "id": {"identifier": "hm189212", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::a42473c32e27164392b48fef4b622157", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20969792&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3ef1e4bdd9795a61be5731fb54a34644", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20969792&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::95cc0988210b95c700ede23b554fb544", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20969792&result=sequence_release", "schema": "url"}}], "abstract": "BACKGROUND: The family Tetranychidae (Chelicerata: Acari) includes ~1200 species, many of which are of agronomic importance. To date, mitochondrial genomes of only two Tetranychidae species have been sequenced, and it has been found that these two mitochondrial genomes are characterized by many unusual features in genome organization and structure such as gene order and nucleotide frequency. The scarcity of available sequence data has greatly impeded evolutionary studies in Acari (mites and ticks). Information on Tetranychidae mitochondrial genomes is quite important for phylogenetic evaluation and population genetics, as well as the molecular evolution of functional genes such as acaricide-resistance genes. In this study, we sequenced the complete mitochondrial genome of Panonychus citri (Family Tetranychidae), a worldwide citrus pest, and provide a comparison to other Acari. RESULTS: The mitochondrial genome of P. citri is a typical circular molecule of 13,077 bp, and contains the complete set of 37 genes that are usually found in metazoans. This is the smallest mitochondrial genome within all sequenced Acari and other Chelicerata, primarily due to the significant size reduction of protein coding genes (PCGs), a large rRNA gene, and the A + T-rich region. The mitochondrial gene order for P. citri is the same as those for P. ulmi and Tetranychus urticae, but distinctly different from other Acari by a series of gene translocations and/or inversions. The majority of the P. citri mitochondrial genome has a high A + T content (85.28%), which is also reflected by AT-rich codons being used more frequently, but exhibits a positive GC-skew (0.03). The Acari mitochondrial nad1 exhibits a faster amino acid substitution rate than other genes, and the variation of nucleotide substitution patterns of PCGs is significantly correlated with the G + C content. Most tRNA genes of P. citri are extremely truncated and atypical (44-65, 54.1 ± 4.1 bp), lacking either the T- or D-arm, as found in P. ulmi, T. urticae, and other Acariform mites. CONCLUSIONS: The P. citri mitochondrial gene order is markedly different from those of other chelicerates, but is conserved within the family Tetranychidae indicating that high rearrangements have occurred after Tetranychidae diverged from other Acari. Comparative analyses suggest that the genome size, gene order, gene content, codon usage, and base composition are strongly variable among Acari mitochondrial genomes. While extremely small and unusual tRNA genes seem to be common for Acariform mites, further experimental evidence is needed.", "author": ["Jin-Jun Wang", "Yuan Ming-Long", "Ming-Long Yuan", "Dou Wei", "Bao-Jun Wang", "Wang Jin-Jun", "Wei Dan-Dan", "Dan-Dan Wei", "Wei Dou", "Wang Bao-Jun"], "localIdentifier": [{"type": "doi", "id": "10.1186/1471-2164-11-597"}, {"type": "pbmid", "id": "20969792"}, {"type": "pmid", "id": "20969792"}], "id": "50|dedup_wf_001::818957b52a5f5872d210e5743a56cdfd", "relatedPublications": 0, "date": ["2010-10-23"], "title": ["The complete mitochondrial genome of the citrus red mite Panonychus citri (Acari: Tetranychidae): high genome rearrangement and extremely truncated tRNAs."], "relatedDatasets": 4}
12
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3f01241b7c0cfb48026e048b8ee5d682", "id": {"identifier": "ay701336", "schema": "genbank"}}], "abstract": "", "title": ["Involvement of Gly 311 residue on substrate discrimination, pH and temperature dependency of recombinant"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.pep.2007.04.008"}], "id": "50|elsevier____::d7121d561d04d5914a5ef2a81b2895ac", "relatedPublications": 0, "date": ["2007"], "relatedDatasets": 1}
13
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::3c39237578624ee2594c377fab93fef2", "id": {"identifier": "10.5517/cc8bjz2", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9d5ca070e5b9d1ed0d60eb4922aa9f93", "id": {"identifier": "10.5517/cc8bk04", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The monohydrate of the title phenolic diacid (C 8 H 6 O 5 .H 2 O, 2-hydroxybenzene-1,3-dioic acid or 3-carboxysalicylic acid) adopts a planar conformation, with the phenol hydrogen internally hydrogen-bonded to the carbonyl of one highly ordered carboxyl, which, in turn, donates a hydrogen bond to the oxygen of water. The second carboxyl is disordered and hydrogen-bonded both to water and to the disordered carboxyl of a centrosymmetrically related neighbor in a static disorder arrangement extending over two full asymmetric units. The water accepts either one or two hydrogen bonds and donates a long bifurcated hydrogen bond shared equally by O atoms of the phenol and the disordered carboxyl. The hydrogen bonding includes no standard carboxyl pairing and is entirely two-dimensional. The resulting planar ribbons stack translationally at a distance of 3.413 (8) A, in an offset arrangement having non-translational interplanar distances of 0.821 (5) and 2.592 (6) A. This structure is compared with two previously reported for this compound. The title compound forms a monoanion, whose tetraphenylphosphonium salt is described (C 32 H 25 O 5 P, tetraphenylphosphonium 2,6-dicarboxyphenolate, tetraphenylphosphonium 2-oxidoisophthalic acid or tetraphenylphosphonium 3-carboxysalicylate). The phenol oxygen is the site of formal negative charge on the anion, which is stabilized in a planar arrangement by symmetrical hydrogen bonds from both ortho-carboxyl groups. The energetics of this arrangement, the phenol and carboxyl acidities, and factors affecting those acidities and providing anion stabilization are discussed.", "author": ["Dubois Patrick", "Bawa Shaleen", "Coté Marie L.", "Thompson Hugh W.", "Lalancette Roger A."], "localIdentifier": [{"type": "doi", "id": "10.1107/s0108768104012686"}], "id": "50|dli_resolver::47d539a7e7941f7154edb643a36f0565", "relatedPublications": 0, "date": [""], "title": ["\"2-Hydroxyisophthalic acid: hydrogen-bonding patterns in the monohydrate and the tetraphenylphosphonium salt. An instance of dramatic acidity enhancement by symmetric, internally hydrogen-bonded anion stabilization\""], "relatedDatasets": 2}
14
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0111057080ba6422f207a541187e5787", "id": {"identifier": "10.5517/ccdc.csd.cc1zvc4b", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Parkin Gerard", "Rauch Michael"], "localIdentifier": [{"type": "doi", "id": "10.1039/c8dt01947a"}], "id": "50|dli_resolver::4e6b8fb32caccc0ed147bda098887ebd", "relatedPublications": 0, "date": [""], "title": ["Insertion of CS2 into the Mg–H bond: synthesis and structural characterization of the magnesium dithioformate complex, [TismPriBenz]Mg(κ2-S2CH)"], "relatedDatasets": 1}
15
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::dd706aa3c2107d33caa17c5946feed21", "id": {"identifier": "10.5517/cc119zbn", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::23d506c005ddf2fefb011aff10d91b4c", "id": {"identifier": "10.5517/cc119z9m", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8df73614fa6365969dd7743fee017787", "id": {"identifier": "10.5517/cc119zcp", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The three transition-metal complexes, (meso-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N)bis(perchlorato-κO)copper(II), [Cu(ClO4)2(C18H40N4)], (I), (meso-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N)bis(nitrato-κO)zinc(II), [Zn(NO3)2(C18H40N4)], (II), and aquachlorido(meso-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N)copper(II) chloride, [CuCl(C18H40N4)(H2O)]Cl, (III), are described. The molecules display a very similarly distorted 4+2 octahedral environment for the cation [located at an inversion centre in (I) and (II)], defined by the macrocycle N4 group in the equatorial sites and two further ligands in trans-axial positions [two O–ClO3 ligands in (I), two O–NO2 ligands in (II) and one chloride and one aqua ligand in (III)]. The most significant difference in molecular shape resides in these axial ligands, the effect of which on the intra- and intermolecular hydrogen bonding is discussed. In the case of (I), all strong hydrogen-bond donors are saturated in intramolecular interactions, while weak intermolecular C—H...O contacts result in a three-dimensional network. In (II) and (III), instead, there are N—H and O—H donors left over for intermolecular interactions, giving rise to the formation of strongly linked but weakly interacting chains.", "author": ["Doctorovich Fabio", "Roy Tapashi G.", "Baggio Ricardo", "Suarez Sebastián", "Yasmin Sabina"], "localIdentifier": [{"type": "doi", "id": "10.1107/s0108270113018465"}], "id": "50|dli_resolver::2fc4173a58324336f391bc68c2dd0cb8", "relatedPublications": 0, "date": [""], "title": ["\"Three transition-metal complexes with the macrocyclic ligandmeso-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane (L): Cu(ClO4)2(L), Zn(NO3)2(L) and CuCl(L)(H2O)Cl\""], "relatedDatasets": 3}
16
{"publisher": ["Biochemical genetics"], "datasources": [{"completionStatus": "incomplete", "datasourceId": "r3d100010527", "datasourceName": "European Nucleotide Archive"}, {"completionStatus": "complete", "datasourceId": "dli_________::pubmed", "datasourceName": "PubMed"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::24a877b50b7c3c159cc933536342b19f", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24449181&result=sequence_release", "schema": "url"}}], "abstract": "None: The big-headed turtle (Platysternon megacephalum) is critically endangered because of overharvesting, illegal trade, and habitat destruction. Assessment of genetic variability in existing populations becomes very important to the taxonomy and conservation of this species. Here we describe 14 microsatellite loci isolated from an enriched genomic library of the big-headed turtle, and the polymorphisms of these loci were assessed in 28 individuals from Huizhou, Heyuan, Zhaoqing, and Shaoguan of Guangdong, China. The range of polymorphism information content is 0.305-0.738, and no evidence of significant linkage disequilibrium was found among any pairs of loci. These 14 new polymorphic microsatellite loci can be used in population genetics, taxonomy, phylogeography, behavior ecology, and conservation efforts of Platysternon megacephalum.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1007/s10528-014-9640-2"}, {"type": "pbmid", "id": "24449181"}], "author": ["Gong Shiping", "Ge Yan", "Wang Fumin", "Chen Jinping", "Chen Guoling", "Hua Liushuai"], "relatedPublications": 0, "id": "50|r3d100010527::0afb88abbfd7ba0e8a1056681bef4891", "title": ["Isolation and characterization of 14 polymorphic microsatellite loci in the big-headed turtle (Platysternon megacephalum)."], "typology": "publication"}
17
{"typology": "publication", "publisher": ["Genomics"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::45a357256c4cfee7188f473abae7d5a1", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10191102&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::154044c52d581f7294a93c2bf3766944", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10191102&result=sequence_release", "schema": "url"}}], "abstract": "", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "10191102"}], "author": ["Chen K S", "Potocki L", "Lupski J R"], "relatedPublications": 0, "id": "50|r3d100010527::551c76ea3641532695ba918cc1959d3b", "title": ["Subunit 3 of the COP9 signal transduction complex is conserved from plants to humans and maps within the smith-magenis syndrome critical region in 17p11.2."], "relatedDatasets": 2}
18
{"typology": "publication", "publisher": ["Genomics"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5293ae207db0fec685cfdf3a7faffa27", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8586424&result=sequence_release", "schema": "url"}}], "abstract": "None: We report here the isolation of a novel cDNA, designated LIS2, that maps to chromosome 2p11.2 by in situ hybridization and demonstrates extremely high sequence similarity to the recently identified LIS1 gene involved in Miller-Dieker lissencephaly at 17p13.3. Specific probes for LIS2 revealed a pattern of expression resembling that of LIS1, although LIS2 is less abundant. Surprisingly, LIS2 detected an additional, higher molecular weight transcript in adult skeletal muscle. Isolated YAC clones and P1 clones mapped by in situ hybridization to two loci on chromosome 2,2p11.2 and 2q13-q14. This hybridization was due to the existence of LIS2 pseudogene LIS2P on the long arm of chromosome 2.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "8586424"}], "author": ["Lindsay E A", "Reiner O", "Bar-Am I", "Cahana A", "Sapir T", "Baldini A", "Carrozzo R", "Shmueli O", "Ledbetter D H"], "relatedPublications": 0, "id": "50|r3d100010527::802f293448c543e140e3fb7f4cec90e3", "title": ["LIS2, gene and pseudogene, homologous to LIS1 (lissencephaly 1), located on the short and long arms of chromosome 2."], "relatedDatasets": 1}
19
{"typology": "publication", "publisher": ["Journal of molecular evolution"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::86a1ff0de49ae9dca1d0ff427d02180d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9847403&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::55df31a087b8b2e445a7f07a94a8ea27", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9847403&result=coding_release", "schema": "url"}}], "abstract": "None: Sequence analysis of two nuclear-encoded glyceraldehyde-3-phosphate dehydrogenase (GAPDH) genes isolated from the dinoflagellate Gonyaulax polyedra distinguishes them as cytosolic and chloroplastic forms of the enzyme. Distance analysis of the cytosolic sequence shows the Gonyaulax gene branching early within the cytosolic clade, consistent with other analyses. However, the plastid sequence forms a monophyletic group with the plastid isoforms of cryptomonads, within an otherwise cytosolic clade, distinct from all other plastid GAPDHs. This is attributed to lateral gene transfer from an ancestral cryptomonad to a dinoflagellate, providing the first example of genetic exchange accompanying symbiotic associations between the two, which are common in present day cells.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9847403"}], "author": ["Morse D", "Woodland Hastings J", "Fagan T"], "relatedPublications": 0, "id": "50|r3d100010527::e8507af0e1578871c6f25e76f49f8457", "title": ["The phylogeny of glyceraldehyde-3-phosphate dehydrogenase indicates lateral gene transfer from cryptomonads to dinoflagellates."], "relatedDatasets": 2}
20
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dedup_wf_001::56f1270b463429b958b92e5f8b2abf23", "id": {"identifier": "v01555", "schema": "genbank"}}], "abstract": "", "title": ["Follicular dendritic cell tumor of the spleen associated with diffuse large B-cell lymphoma"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.humpath.2007.08.022"}], "id": "50|elsevier____::608d686f2bc7b02585ca6a9d06f3d5a0", "relatedPublications": 0, "date": ["2008"], "relatedDatasets": 2}
21
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::031dbfc129aba89ae5b4bd73d0c92afe", "id": {"identifier": "10.5517/cc1k2fpr", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::67639a236c63f624c6a7e74e4803e02f", "id": {"identifier": "10.5517/cc1k2frt", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::808a089957e417a4f80ebb66c4ac6173", "id": {"identifier": "10.5517/cc1k2fqs", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "A series of novel heavier carbene analogs 3–8, MeN(CH2CH2NTs)(CH2CR2O)M (M = Ge (3, R = H; 4, R = Ph), Sn (5, R = H; 6, R = Ph), Pb (7, R = H; 8, R = Ph)), was prepared by the interaction of M[N(SiMe3)2]2 (M = Ge, Sn, Pb) with substituted N,N,O-ligands, 1 and 2, MeN(CH2CH2NHTs)(CH2CR2OH) (1, R = H; 2, R = Ph). All the compounds were investigated by IR and multinuclear NMR spectroscopy and it was established that in a solution tin and lead compounds are agglomerated. An X-ray diffraction analysis of 3 revealed the monomeric structure with three-coordinated Ge atom. In contrast to germylenes, plumbylenes are associated in solid state. In the crystalline phase, the steric hindrance affects the degree of association. Thus, lead derivative 7 based on unsubstituted ligand, 1, forms dimers with strong bridging Pb–O bonding which further crystallize into chains. On contrary, plumbylene 8 based on phenyl substituted ligand, 2, is monomeric and only weak Pb⋯OSO contacts are observed is the solid state.", "author": ["Zaitsev Kirill V.", "Egorov Mikhail P.", "Peregudov Alexander S.", "Zaitseva Galina S.", "Karlov Sergey S.", "Cherepakhin Valeriy S.", "Churakov Andrei V.", "Tarasevich Boris N."], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ica.2015.12.025"}], "id": "50|dli_resolver::1a30dbb82a2ed5621916de2529016960", "relatedPublications": 0, "date": [""], "title": ["\"Extending the family of stable heavier carbenes: New tetrylenes based on N,N,O-ligands\""], "relatedDatasets": 3}
22
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1b52efe10ab2262e9180184895b76b75", "id": {"identifier": "10.5517/cc4m743", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d915e86eec8830c4a7a5b9b290a021e5", "id": {"identifier": "10.5517/cc4m754", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Two types of crystals were isolated from aqueous solutions of copper(II) salts, the tetradentate diaminodiamide ligand H2L1 (H2L1 = 1,8-diamino-3,6-diazaoctane-4,5-dione) and base. Crystal structural analyses revealed that one is the expected [Cu(L1)] and the other is the corresponding dimer [Cu2(L1)2], with the two copper(II) chromophores in nearly parallel planes (Cu· · ·Cu distance = 3.35 A; angle between the two planes, θ = 18.6°), where each ligand co-ordinates to both metal centers. Relief of strain, induced by the central, flat, five-membered chelate ring with two amide donors and two fused five-membered rings, and van der Waals attractions may be responsible for the stabilization of the dimer. This is supported by force field calculations which accurately reproduce the experimentally observed structures (RMS = 0.14 (monomer), 0.19 A (dimer)), define them as the lowest strain energy conformers and find a stabilization of the dimer by 24 kJ mol–1 (ΔUstrain = 2Ustrainmonomer – Ustraindimer).", "author": ["Gavrish Sergey P.", "Comba Peter", "Peters Alexander", "Lightfoot Philip", "Lampeka Yaroslaw D."], "localIdentifier": [{"type": "doi", "id": "10.1039/a905437e"}], "id": "50|dli_resolver::775653c4df8dd6597ee5627dbf5ea098", "relatedPublications": 0, "date": [""], "title": ["\"Dimerization of a copper(II) compound with a tetradentate diaminodiamide ligand †\""], "relatedDatasets": 2}
23
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::42c6ad87cc1114e06b62366f61b57ff4", "id": {"identifier": "10.6084/m9.figshare.c.3602780.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::2fbd3fec74bf153f71f377d05b1a12ac", "id": {"identifier": "10.6084/m9.figshare.c.3602780_d1.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::7720eec6792abda6d45815435f9375c5", "id": {"identifier": "10.6084/m9.figshare.c.3602780", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::7ec9a7533160b9ede399c25e6ed13837", "id": {"identifier": "10.6084/m9.figshare.c.3602780_d2.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Background: Despite an increase in research devoted to primary care attributes, the patient benefits and educational aspects of broad scope practice of primary care physicians (PCPs) have not been well studied, due to a lack of validated measurement in each country. The objective of this study was to develop and validate the Scope of Practice Inventory (SPI) to measure physicians’ scope of practice within the Japanese primary care setting. Methods: The questionnaire was developed in seven phases: 1) item generation, 2) consensus method for necessity of each item, 3) Delphi process for the importance of each item, 4) pilot tests to limit the number of items, 5) preliminary cross-sectional study to examine factor structure and to validate the construct validity, 6) evaluation of internal consistency and intra-class reliability, and 7) evaluation of external validity. To confirm the interpretability of the SPI, the determinants of the SPI using a generalized linear model were evaluated. Results: Among 359 items generated by a focus group, 180 reached a defined consensus on face and content validity after the Delphi process. After deletion of ite ms with Kappa values less than 0.6, 120 items were selected for the preliminary study. The principle component analysis using responses from 451 PCPs eliminated 52 items. The final 68-point SPI had three subdomains: Inpatient care, 25 items; Urgent care and minor procedures, 27 items; and Ambulatory care, 16 items. Internal consistency and test-retest reliability for total SPI and each subdomain revealed acceptable reliability. Male sex, less years since graduation, working in a hospital, sub-urban or rural setting, having remote experience, and having board certification as a PCP were positively associated with higher SPI. Conclusions: We developed a self-administered 68-point scale, the SPI, which had satisfactory validity and reliability. Primary care quality and educational research using SPI are expected to contribute to comprehensive and efficient health care systems in the future.", "author": ["Ichikawa Shuhei", "Takemura Yousuke C.", "Ie Kenya"], "localIdentifier": [{"type": "doi", "id": "10.1186/s12875-015-0357-z"}], "id": "50|dli_resolver::763cff2bf6eb78a5d1208c8aa9699555", "relatedPublications": 0, "date": [""], "title": ["\"Development of a questionnaire to measure primary care physicians’ scope of practice\""], "relatedDatasets": 4}
24
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::fa98ed59380c4614f336e4997d4cbeb5", "id": {"identifier": "10.4232/1.0680", "schema": "url"}}], "abstract": "This paper attempts to explicitly integrate the idea of reference group when measuring relative deprivation. It assumes that in assessing her situation in society an individual compares herself with individuals whose environment can be considered as being similar to hers. By environment we mean the set of people with a similar set of observable characteristics such as human capital, household attributes and location. We therefore propose to measure relative deprivation by comparing the actual income of an individual with the one he could have expected on the basis of the level of these characteristics. We then aggregate these individual comparisons by computing an index of \"distributional change\" that compares, on a non anonymous basis, the distributions of the actual and \"expected\" incomes. At the difference of other approaches to relative deprivation our measure takes into account not only the difference between the actual and \"expected\" individual incomes but also that between the actual and \"expected\" individual ranks. We applied our approach to Moldova, the poorest country in Europe, using a survey which covered a period of six years (from 2000 to 2005). We then observed that our measure of deprivation, when compared to other possible measures of deprivation, had a higher correlation with the answers given by individuals in the survey we used to a question on their assessment of their housing living conditions (a higher number corresponding to a worse subjective situation).", "author": ["Jacques Silber", "Paolo Verme"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:dedup_wf_001::46ad373b6cb3d2b853cca7a54f12ff25"}], "id": "50|dli_resolver::d2592523cf6d2ed728b316207f82e980", "relatedPublications": 0, "date": [""], "title": ["Distributional change, reference groups and the measurement of relative deprivation"], "relatedDatasets": 1, "subject": [{"scheme": "keyword", "value": "jel:O15"}, {"scheme": "keyword", "value": "jel:D31"}, {"scheme": "keyword", "value": "jel:D63"}, {"scheme": "keyword", "value": "jel:I32"}, {"scheme": "keyword", "value": "deprivation, reference groups, and inequality."}, {"scheme": "keyword", "value": "Deprivation ; Inequality ; Reference group"}]}
25
{"typology": "publication", "publisher": ["Oxford University Press (OUP)"], "doiRels": [{"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::ee87b92d634b902eb56756317a0e722c", "id": {"identifier": "10.5524/review.100814", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::dcc794f34c642ff5d68e40e770deafbc", "id": {"identifier": "10.5524/review.100813", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::5dfdc135382a8eeadd4b3b86ba0c0624", "id": {"identifier": "10.5524/review.100812", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Wilson Michael H.", "Griffiths Marcus", "Pound Michael P.", "Townsend Alexandra J.", "Wells Darren M.", "Atkinson Jonathan A.", "Bulat Adrian", "Murchie Erik H.", "French Andrew P.", "Pridmore Tony P.", "Tzimiropoulos Georgios", "Jackson Aaron S."], "localIdentifier": [{"type": "doi", "id": "10.1093/gigascience/gix083"}], "id": "50|dli_resolver::29317bc627796cdf2a46034a38d3ee40", "relatedPublications": 0, "date": [""], "title": ["Deep machine learning provides state-of-the-art performance in image-based plant phenotyping"], "relatedDatasets": 3}
26
{"typology": "publication", "publisher": ["Gene"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::ed82f26ad82dba3634603a32b8b18ae2", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8293992&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::820bcebf7a6fcac2c12a06f633c7e98d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8293992&result=coding_release", "schema": "url"}}], "abstract": "None: The putative DNA polymerase-encoding gene of African swine fever virus has been sequenced. The gene, designated G1207R, is located in the central region of the viral genome, and encodes a protein of 1207 amino acids (aa) with a predicted M(r) of 139,835. The gene is transcribed at both early and late stages of infection into a 4.1-kb RNA. Transcription is initiated at tsp, 8 nucleotides (nt) upstream from the start codon. Open reading frame (ORF) G1207R contains four direct repeats in tandem close to the 3'-end. Each repeat consists of 12 nt, coding for the reiterated sequence, K/NPAG. The deduced aa sequence of G1207R shows significant similarity with DNA polymerases from cellular and viral origin, belonging to the alpha-like family of DNA polymerases. In particular, the G1207R protein presents a colinear arrangement of all the 3'-->5' exonuclease and polymerization highly conserved aa regions characteristic of this group of DNA-dependent DNA polymerases.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "8293992"}], "author": ["Rodríguez J F", "Salas M L", "Viñuela E", "Rodríguez J M", "Yáñez R J"], "relatedPublications": 0, "id": "50|r3d100010527::7916e33031f77c250257303c3c16575d", "title": ["The DNA polymerase-encoding gene of African swine fever virus: sequence and transcriptional analysis."], "relatedDatasets": 2}
27
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c0c1f9997ae59de9b7002918ca740f3b", "id": {"identifier": "10.5517/ccdc.csd.cc1nk73k", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "<p>We present a robust approach to prepare conformal Co<sub>3</sub>O<sub>4</sub> nanocoatings on high aspect ratio structures from a new cobalt metalorganic complex.</p>", "author": ["Yu Penmgei", "Büyükyazi Mehtap", "Coll Mariona", "Fischer Thomas", "Mathur Sanjay"], "localIdentifier": [{"type": "doi", "id": "10.1039/c7dt02757e"}], "id": "50|dli_resolver::528ff539c745afad4d943667ab595005", "relatedPublications": 0, "date": [""], "title": ["\"A cobalt(ii)heteroarylalkenolate precursor for homogeneous Co3O4 coatings by atomic layer deposition\""], "relatedDatasets": 1}
28
{"typology": "publication", "publisher": ["Gene"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::a4741fe296197ed71613369ff2798782", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20302924&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::e2fbea25395faefdcf206eafdc2ef6d9", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20302924&result=coding_release", "schema": "url"}}], "abstract": "None: Among the Solanum genus, Solanum quitoense Lam. (lulo) is a promising species of Neotropical Solanaceae to become a premium crop in international markets. Wild relatives of S. quitoense are a source of desirable characteristics to be exploited for genetic improvement. To enhance the understanding of and access to the genetic diversity in landrace and wild relatives of lulo, we estimated the relative sequence diversity among them and their wild relative Solanum hirtum. With the use of COSII markers, we established that diversity of cultivated lulo (S. quitoense) is significantly lower than that of its wild relative S. hirtum. In the same way, we found that diversity of lulo is similar to that previously reported for tomato, while the diversity of S. hirtum is comparable to that of other wild relatives of cultivated plants. Our results suggest that high variability of some genes associated to abiotic stress response and pathogen resistance has been favored in wild and cultivated lulo plants.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "20302924"}, {"type": "doi", "id": "10.1016/j.gene.2010.03.005"}], "author": ["Bedoya-Reina Oscar C", "Barrero Luz S"], "relatedPublications": 0, "id": "50|r3d100010527::8c9ef9ff6ac660db901ee9f68ba73ab5", "title": ["Preliminary assessment of COSII gene diversity in lulo and a relative species: initial identification of genes potentially associated with domestication."], "relatedDatasets": 2}
29
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8ccaba853a066ee9c057dc3e9cd05cd0", "id": {"identifier": "10.3886/icpsr27868.v2", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Lisha, N. E.", "Delucchi, K. L.", "Crano, W. D."], "localIdentifier": [{"type": "icpsr", "id": "113911"}], "relatedPublications": 0, "title": ["Participation in Team Sports as Related to Alcohol and Marijuana Use Growth in Youth [poster]"], "id": "50|r3d100010255::63cae21e7c47368ac67b74be0dd1f0b4"}
30
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::85a5ebf76afb483d5a8c2101f31398ec", "id": {"identifier": "10.17632/c24kn95d42.1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Quigley S.P.", "Gibbs S.J.", "Poppi D.P.", "McLennan S.R.", "Costa D.F.A.", "Sun X.Q.", "Isherwood P."], "localIdentifier": [{"type": "doi", "id": "10.1016/j.anifeedsci.2017.09.003"}], "id": "50|dli_resolver::7ac9c5420f7ec163deb24a7ef5072a67", "relatedPublications": 0, "date": [""], "title": ["\"The inclusion of low quantities of lipids in the diet of ruminants fed low quality forages has little effect on rumen function\""], "relatedDatasets": 1}
31
{"typology": "publication", "publisher": ["Nucleic acids research"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::39bbd3a83a8b60b02778bb7eabf9d4d4", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1840677&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3eb48400dd84f6f4b3b42b069b71ccfa", "id": {"identifier": "x60103", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::6b3c0f97c8aef207e1f1e85e5378e44c", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1840677&result=taxon", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f8aefffb752d117cdf67b86166f99699", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1840677&result=coding_release", "schema": "url"}}], "abstract": "None: The mouse pancreatic ribonuclease gene Rib-1 was isolated from a library of mouse genomic DNA and sequenced. This small gene contains a nontranslated exon of 52 base pairs, an intron of 791 base pairs, and a coding exon of 741 base pairs. Rib-1 transcripts were detected in parotid gland as well as in pancreas. The abundance of the transcripts were approximately 200-fold greater in pancreatic RNA than in parotid RNA. The sites of transcription initiation were mapped by primer extension and ribonuclease protection assays. One major initiation site and several minor initiation sites were identified in pancreatic RNA. Transcription in parotid appears to be initiated from the same sites. Parotid-specific transcripts were not detected. The data suggest that Rib-1 is transcribed in pancreas and parotid from the same promoter. This is in contrast with the mechanism for production of amylase in pancreas and parotid, which is accomplished by tissue specific expression of different gene copies.", "author": ["Koeplin D", "Meisler M H", "Lc, Samuelson", "Howard, G.", "Rm, Schmid", "Mh, Meisler", "Samuelson L C", "Schmid R M", "Koeplin, D.", "Wiebauer K", "Howard G", "Wiebauer, K."], "localIdentifier": [{"type": "pbmid", "id": "1840677"}, {"type": "pmid", "id": "1840677"}], "id": "50|dedup_wf_001::6fcb884133be13c456c1f57435467a3b", "relatedPublications": 0, "date": ["1991-12-01"], "title": ["Isolation of the murine ribonuclease gene Rib-1: structure and tissue specific expression in pancreas and parotid gland."], "relatedDatasets": 4}
32
{"typology": "publication", "publisher": ["Molecular microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::80d32d2470dac3c8a2985027536a429c", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=17076668&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::ea55a90d47069a5dbb8097821eba353d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=17076668&result=coding_release", "schema": "url"}}], "abstract": "None: We have previously demonstrated that the reductive carboxylation of 2-oxoglutarate in Hydrogenobacter thermophilus TK-6 is not simply a reversal of the oxidative decarboxylation catalysed by isocitrate dehydrogenase (ICDH). The reaction involves a novel biotin protein (carboxylating factor for ICDH-CFI) and ATP. In this study, we have analysed the ICDH/CFI system responsible for the carboxylation reaction. Sequence analysis revealed a close relationship between CFI and pyruvate carboxylase. Rather unexpectedly, the rate of ATP hydrolysis was greater than that of isocitrate formation or NADH oxidation. Furthermore, ATP hydrolysis catalysed by CFI was dependent on 2-oxoglutarate but not on ICDH, suggesting that a carboxylated product is formed in the absence of ICDH. The product, which was detectable only at low temperatures, was identified as oxalosuccinate. Thus, CFI was confirmed to be a novel enzyme that catalyses the carboxylation of 2-oxoglutarate to form oxalosuccinate, which corresponds to the first step of the reductive carboxylation from 2-oxoglutarate to isocitrate. The CFI-ICDH system may also be present in mammals, where it could play a significant role in modulating central metabolism.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "17076668"}], "author": ["Igarashi Yasuo", "Aoshima Miho"], "relatedPublications": 0, "id": "50|r3d100010527::aa7b5a523321908f1b5717bfcfcd3207", "title": ["A novel oxalosuccinate-forming enzyme involved in the reductive carboxylation of 2-oxoglutarate in Hydrogenobacter thermophilus TK-6."], "relatedDatasets": 2}
33
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b165ba85f4316624503a71b7fba90aab", "id": {"identifier": "ak013116", "schema": "ena"}}], "abstract": "", "author": ["Machiko Itoh", "Nobuyuki Takakura", "Masahide Asano", "Kazushi Sugihara", "Masaya Ueno", "Lingyu Kong"], "localIdentifier": [{"type": "pmid", "id": "16287864"}], "id": "50|pubmed______::fe3f74e4d35c95e93f7921b0b995e423", "relatedPublications": 0, "date": ["2005-12-01"], "title": ["PSF1 is essential for early embryogenesis in mice."], "relatedDatasets": 1}
34
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9dfc3b016436a0585df214a54525819f", "id": {"identifier": "10.5517/cc140qzv", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "With only a 2.6 A resolution laboratory powder diffraction pattern of the θ phase of Pigment Yellow 181 (P.Y. 181) available, crystal-structure solution and Rietveld refinement proved challenging; especially when the crystal structure was shown to be a triclinic dimethylsulfoxide N-methyl-2-pyrrolidone (1:1:1) solvate. The crystal structure, which in principle has 28 possible degrees of freedom, was determined in three stages by a combination of simulated annealing, partial Rietveld refinement with dummy atoms replacing the solvent molecules and further simulated annealing. The θ phase not being of commercial interest, additional experiments were not economically feasible and additional dispersion-corrected density functional theory (DFT-D) calculations were employed to confirm the correctness of the crystal structure. After the correctness of the structure had been ascertained, the bond lengths and valence angles from the DFT-D minimized crystal structure were fed back into the Rietveld refinement as geometrical restraints (`polymorph-dependent restraints') to further improve the details of the crystal structure; the positions of the H atoms were also taken from the DFT-D calculations. The final crystal structure is a layered structure with an elaborate network of hydrogen bonds.", "author": ["van de Streek Jacco"], "localIdentifier": [{"type": "doi", "id": "10.1107/s2052520615000724"}], "id": "50|dli_resolver::a86f2b41951035d06c1ea65ad0b97267", "relatedPublications": 0, "date": [""], "title": ["\"Structure of Pigment Yellow 181 dimethylsulfoxideN-methyl-2-pyrrolidone (1:1:1) solvate from XRPD + DFT-D\""], "relatedDatasets": 1}
35
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::1e5d22a2db20d1fddb5763b43e715a67", "id": {"identifier": "4jl3", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::cbdc032b9a46cef974cb828ef59091e6", "id": {"identifier": "4jyk", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::4c4301f978ceace46000e60cec2a5bfe", "id": {"identifier": "3loc", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::7990b3bd4477e33ecf1bc45b300b7862", "id": {"identifier": "4gck", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::8b6586fb1fa43111efc35262b8fc6188", "id": {"identifier": "4x1e", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::93496e176f5f5caa86b51f7e13566ee8", "id": {"identifier": "1pb6", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::8b6586fb1fa43111efc35262b8fc6188", "id": {"identifier": "4x1e", "schema": "pdb"}}], "abstract": "", "title": ["Ligand binding specificity of RutR, a member of the TetR family of transcription regulators in"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.fob.2015.01.002"}], "id": "50|elsevier____::b866efc51efcd31172c6f0f05b2d11d7", "relatedPublications": 0, "date": ["2015"], "relatedDatasets": 8}
36
{"typology": "publication", "publisher": ["Journal of clinical microbiology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "", "dnetId": "60|pubmed______::4a9c6f04b29355fd1d4f762bbbbd243e", "id": {"identifier": "ap010918.1", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "", "dnetId": "60|dli_resolver::6ff9f8e77cbf5141f605e6c1799bbb38", "id": {"identifier": "bx248342.1", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::862ae6dd4d271e75d97d2e46aa017143", "id": {"identifier": "hm135443", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::ffd14214bca7253d5c17f297f926cb88", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=20844219&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "", "dnetId": "60|pubmed______::bd1241b9ae69918fb388212b22bb5202", "id": {"identifier": "bx842579.1", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::a5a2b4058c5573206a4fde9827c219e0", "id": {"identifier": "hm135442", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::bfe7ddcdd9d5b4f9887fdbbec7550531", "id": {"identifier": "hm135444", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::565bdc0a0bcba82f88c43f531e7e4d79", "id": {"identifier": "hm135445", "schema": "ena"}}], "abstract": "None: Identification and characterization of the Mycobacterium tuberculosis strains are important for clinical and therapeutic management of tuberculosis. Real-time PCR with a high-resolution melt assay was found to improve the diagnostic process. The assay includes differentiation between M. tuberculosis and Mycobacterium bovis based on one single-nucleotide polymorphism (SNP) in the narGHJI and oxyR genes and determination of M. bovis based on the region of differences 1 (RD1). This assay correctly identified the 7 tested Mycobacterium reference strains and 52 clinical samples with a sensitivity of 2 pg DNA. This assay will help in prescribing adequate treatment and monitoring disease dynamics.", "author": ["Kifaya Azmi", "Suheir Ereqat", "Azmi Kifaya", "Abedelmajeed Nasereddin", "Mark Spigelman", "Bar-Gal Gila Kahila", "Ziad Abdeen", "Greenblatt Charles L", "Ereqat Suheir", "Greenblatt, Charles L.", "Spigelman Mark", "Qaddomi Sharif E", "Gila Kahila Bar-Gal", "Nasereddin Abedelmajeed", "Qaddomi, Sharif E.", "Abdeen Ziad"], "localIdentifier": [{"type": "doi", "id": "10.1128/jcm.00943-10"}, {"type": "pbmid", "id": "20844219"}, {"type": "pmid", "id": "20844219"}], "id": "50|dedup_wf_001::ecf6f8a9b34b3f9b1cc95674e7612ffd", "relatedPublications": 0, "date": ["2010-09-15"], "title": ["Rapid differentiation of Mycobacterium tuberculosis and M. bovis by high-resolution melt curve analysis."], "relatedDatasets": 8}
37
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d5ef12a87a3c7019648ebaa614d0cd74", "id": {"identifier": "10.5517/cc803n0", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Brucinium L-glycerate 4.75-hydrate, C 23 H 27 N 2 O 4  + .C 3 H 5 O 4  - -4.75H 2 O, was obtained by racemic resolution of DL-glyceric acid. This is the first report of triclinic crystals containing brucine. The water and L-glycerate anions form tapes built up of pentamers formed by water and carboxy O atoms, and this appears to be the reason for the low symmetry of the crystal.", "author": ["Białońska Agata", "Ciunik Zbigniew", "Popek Tomasz", "Lis Tadeusz"], "localIdentifier": [{"type": "doi", "id": "10.1107/s0108270104031853"}], "id": "50|dli_resolver::c5ff7428a6379da654fa75f98227115d", "relatedPublications": 0, "date": [""], "title": ["\"Cyclic water pentamers in triclinic crystals of bruciniumL-glycerate\""], "relatedDatasets": 1}
38
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::12454b1bcecbeb4a380bb7aa8ad00863", "id": {"identifier": "10.5517/cc795j6", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title complex, [Ru2(C11H9N2)4(H2O)][SbF6]·C2H10O, has a diruthenium(II,III) unit bridged by four PhNpy ligands. There is an axial aqua ligand on the ruthenium(III) atom. The Ru⋯Ru distance is 2.288 (1) A.", "author": ["Gao LiBin", "Zhang Liyi", "Chen Zhongning"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536803011760"}], "id": "50|dli_resolver::dcb875f75089033913aacf75ffbdca8f", "relatedPublications": 0, "date": [""], "title": ["\"Tetrakis(μ2-anilinopyridinato-κ2N:N′)aquadiruthenium(II,III) hexafluoroantimonate diethyl ether solvate\""], "relatedDatasets": 1}
39
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c74e40191fc27c09e241363cdc44ec74", "id": {"identifier": "u32519", "schema": "ena"}}], "abstract": "", "author": ["Ochem, A.", "Falaschi, A.", "Staub, A.", "Costa, M."], "localIdentifier": [{"type": "pmid", "id": "9889278"}], "id": "50|pubmed______::018ae2065f03573e6a9c85e5dd7a528e", "relatedPublications": 0, "date": ["1999-02-01"], "title": ["Human DNA helicase VIII: a DNA and RNA helicase corresponding to the G3BP protein, an element of the ras transduction pathway."], "relatedDatasets": 1}
40
{"typology": "publication", "publisher": ["Journal of virology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::6caa56558d921c4ba29e3e04f402eb03", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=17005695&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::48305e86f042ab57b751f735e725b875", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=17005695&result=sequence_release", "schema": "url"}}], "abstract": "None: Cytomegaloviruses carry the US22 family of genes, which have common sequence motifs but diverse functions. Only two of the 12 US22 family genes of murine cytomegalovirus (MCMV) are essential for virus replication, but their functions have remained unknown. In the present study, we deleted the essential US22 family genes, m142 and m143, from the MCMV genome and propagated the mutant viruses on complementing cells. The m142 and the m143 deletion mutants were both unable to replicate in noncomplementing cells at low and high multiplicities of infection. In cells infected with the deletion mutants, viral immediate-early and early proteins were expressed, but viral DNA replication and synthesis of the late-gene product glycoprotein B were inhibited, even though mRNAs of late genes were present. Global protein synthesis was impaired in these cells, which correlated with phosphorylation of the double-stranded RNA-dependent protein kinase R (PKR) and its target protein, the eukaryotic translation initiation factor 2alpha, suggesting that m142 and m143 are necessary to block the PKR-mediated shutdown of protein synthesis. Replication of the m142 and m143 knockout mutants was partially restored by expression of the human cytomegalovirus TRS1 gene, a known double-stranded-RNA-binding protein that inhibits PKR activation. These results indicate that m142 and m143 are both required for inhibition of the PKR-mediated host antiviral response.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "17005695"}], "author": ["Valchanova Ralitsa S", "Picard-Maureau Marcus", "Budt Matthias", "Brune Wolfram"], "relatedPublications": 0, "id": "50|r3d100010527::3dd534e272097a1d583acabb17a9ddb3", "title": ["Murine cytomegalovirus m142 and m143 are both required to block protein kinase R-mediated shutdown of protein synthesis."], "relatedDatasets": 2}
41
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::38e023a5d9ee6cc8ffd0a21995f60706", "id": {"identifier": "10.3334/cdiac/otg.cdiac_158", "schema": "url"}}], "abstract": "This paper presents a wavelet multiresolution analysis of a time series dataset to study the correlation between the real temperature data and three temperature model reconstructions at different scales. We show that the Mann et.al. model reconstructs the temperature better at all temporal resolutions. We show and discuss the wavelet multiresolution analysis of the Mann's temperature reconstruction for the period from 1400 to 2000 A.D.E.", "author": ["Roberts, Jim", "Scafetta, Nicola", "Imholt, Tim", "Grigolini, Paolo"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:od________18::34ac2ffee66a330d7f73f5ba0ead5072"}], "id": "50|dli_resolver::deff8238976bfca887ffaa0cc1ba8390", "relatedPublications": 0, "date": [""], "title": ["Temperature reconstruction analysis"], "relatedDatasets": 1, "subject": [{"scheme": "keyword", "value": "Physics - Data Analysis, Statistics and Probability"}, {"scheme": "keyword", "value": "Physics - Atmospheric and Oceanic Physics"}]}
42
{"typology": "publication", "publisher": ["Gene"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f12d6b08478adae26eff8854b00f8fda", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9602172&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::4d7a51cdaadc19ac2a53b7f795435f8e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9602172&result=sequence_release", "schema": "url"}}], "abstract": "None: We report the sequences of seven new cytoplasmic intermediate filament (IF) proteins of the cephalochordate Branchiostoma. The eight sequences currently known describe four subfamilies (A, B, C and D). All eight IF proteins show the short-length version of the coil 1b subdomain found in vertebrates and lack the additional 42 residues present in all nuclear lamins and the protostomic IF proteins. Although the lancelet is considered to be the closest relative of the vertebrates, it is difficult to relate its IF subfamilies unambiguously to a particular type I-IV subfamily of vertebrates. C1 and C2 have tail domains with two 64 residue repeats of coiled coil-forming ability, a structural feature unknown for IF proteins from vertebrates or protostomia. The epidermal protein D1 shows only a slightly better identity score with vertebrate type II keratins than with type III proteins, but the D1 gene organization is that of type III proteins. The same holds for A1, A2, B1, B2 and C2 genes, although the latter has an additional and uniquely positioned intron. Antibodies (Ab) raised against recombinant C2 and D1 proteins reveal these proteins in epidermis, some internal epithelia and parts of the spinal cord. The results on exonic sequences, gene organization and expression suggest that Branchiostoma IF proteins may retain a largely archetypal condition, whereas the vertebrates have established the well-known type I-IV IF system.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9602172"}], "author": ["Weber K", "Karabinos A", "Riemer D"], "relatedPublications": 0, "id": "50|r3d100010527::b641e8acab9a687c18df6b50bcb235e5", "title": ["Analysis of eight cDNAs and six genes for intermediate filament (IF) proteins in the cephalochordate Branchiostoma reveals differences in the IF multigene families of lower chordates and the vertebrates."], "relatedDatasets": 2}
43
{"typology": "publication", "publisher": ["GN1 Genesis Network"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::865fd4b580370332fa6bffa9d4e37f44", "id": {"identifier": "10.6084/m9.figshare.5670550.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Canziani Maria Eugênia Fernandes", "Bonato Fabiana Oliveira Bastos"], "localIdentifier": [{"type": "doi", "id": "10.5935/0101-2800.20170033"}], "id": "50|dli_resolver::ca04b98afb6d11c7385164cbee494955", "relatedPublications": 0, "date": [""], "title": ["\"Ventricular arrhythmia in chronic kidney disease patients\""], "relatedDatasets": 1}
44
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4be7797a853235d0231b011dcca719fc", "id": {"identifier": "10.5517/cc1jhf9r", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4768448a06d7395f411a835d0ff2784e", "id": {"identifier": "10.5517/cc1jhf6n", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::37c902c70e57e883eb11619bfd9171fd", "id": {"identifier": "10.5517/cc1jhf7p", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a0d9bd317d8abdbfc3f44e96cc4d6a33", "id": {"identifier": "10.5517/cc1jhf8q", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Treatment of [{Ti(η5-C5Me5)(μ-NH)}3(μ3-N)] (1) with zirconium or hafnium tetrachloride adducts [MCl4(thf)2] affords complexes [Cl3M{(μ3-N)(μ3-NH)2Ti3(η5-C5Me5)3(μ3-N)}] (M = Zr (2), Hf (3)). Titanium chloride complexes [Cl2Ti{(μ3-N)2(μ3-NH)Ti3(η5-C5Me5)3(μ3-N)}] (4) and [(Me2NH)ClTi{(μ3-N)3Ti3(η5-C5Me5)3(μ3-N)}] (5) are obtained by reaction of 1 with [TiCl4−x(NMe2)x] (x = 2, 3). The dimethylamine ligand in 5 is displaced by pyridine to give the analogue complex [(py)2ClTi{(μ3-N)3Ti3(η5-C5Me5)3(μ3-N)}] (6). Treatment of the titanium chloride complexes 4 and 5 with sodium cyclopentadienide or lithium bis(trimethylsilyl)amide reagents leads to the cube-type nitrido derivatives [RTi{(μ3-N)3Ti3(η5-C5Me5)3(μ3-N)}] (R = η5-C5H5 (7), N(SiMe3)2 (8)). The reaction of the zirconium trichloride complex 2 with [Tl(C5H5)] yields exclusively the dichloride-monocyclopentadienyl derivative [(η5-C5H5)Cl2Zr{(μ3-N)(μ3-NH)2Ti3(η5-C5Me5)3(μ3-N)}] (9). However, the treatment of 2 with excess [Na(C5H5)] causes further chloride replacement in 9 and subsequent cyclopentadiene elimination to give [(η5-C5H5)Zr{(μ3-N)3Ti3(η5-C5Me5)3(μ3-N)}] (10) via intermediates [(η5-C5H5)2ClZr{(μ3-N)Ti3(η5-C5Me5)3(μ-NH)2(μ3-N)}] (11) and [(η5-C5H5)ClZr{(μ3-N)2(μ3-NH)Ti3(η5-C5Me5)3(μ3-N)}] (12). Treatment of 2 or 9 with [Mg(C5H5)2] leads to the magnesium derivative [(η5-C5H5)Mg(μ-Cl)2(η5-C5H5)Zr{(μ4-N)(μ3-N)(μ3-NH)Ti3(η5-C5Me5)3(μ3-N)}] (13), which can be visualized as a result of the incorporation of one [Mg(η5-C5H5)Cl] moiety to complex 12. In contrast to the metathesis process with [M(C5H5)x] derivatives and subsequent C5H6 eliminations, the reaction of 2 with potassium pentamethylcyclopentadienide in toluene produces the paramagnetic derivative [K(μ-Cl)3Zr{(μ3-N)(μ3-NH)2Ti3(η5-C5Me5)3(μ3-N)}] (14) and C10Me10. Complex 14 reacts with one equivalent of 18-crown-6 or cryptand-222 to give the molecular complex [(18-crown-6)K(μ-Cl)3Zr{(μ3-N)(μ3-NH)2Ti3(η5-C5Me5)3(μ3-N)}] (15) or the ion pair [K(crypt-222)][Cl3Zr{(μ3-N)(μ3-NH)2Ti3(η5-C5Me5)3(μ3-N)}] (16). The X-ray crystal structures of 2, 8, 13 and 15 have been determined.", "author": ["Caballo Jorge", "Yélamos Carlos", "Mena Miguel", "Greño Maider", "Pérez-Redondo Adrián"], "localIdentifier": [{"type": "doi", "id": "10.1039/c5dt02836a"}], "id": "50|dli_resolver::bfdd10c59ce55d4bbc76d9b759b35908", "relatedPublications": 0, "date": [""], "title": ["\"Homo and heteropolymetallic Group 4 molecular nitrides\""], "relatedDatasets": 4}
45
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::405bf8b149d1f63303e1626438e73083", "id": {"identifier": "261d", "schema": "pdb"}}], "abstract": "The crystal structure of netropsin bound to the decamer d(CGCAATTGCG) has been determined at 2.4 A resolution. This is the first example of a crystal structure of netropsin bound to decamer DNA. The central eight bases of each DNA single-strand base pair with a self-complementary strand to form an octamer B-DNA duplex. These duplexes lie end to end within the unit cell. The terminal 5‘-C and G-3‘ bases are unpaired and interact with the neighboring duplexes via interactions within both the major and minor groove to form base triplet interactions of the type C+−G·C and G*(G·C), respectively. The triplet interaction of the type C+−G·C is known to exist within triplex DNA with the C+ base oriented parallel with the Watson−Crick guanine base to which it hydrogen bonds. The netropsin molecule lies within the minor groove of the octamer duplex and assumes a class I type position, with bifurcated hydrogen-bonding interactions from the amide groups of the netropsin to the A·T base pairs of the minor groove. The netropsin molecule fits within a five base pair long minor groove site by bending of the flexible amidinium group at one end of the drug.", "author": ["Garman Elspeth", "Neidle Stephen", "Nunn Christine M."], "localIdentifier": [{"type": "doi", "id": "10.1021/bi9628228"}], "id": "50|dli_resolver::c83ce424661ae604a2a026c572ffcff5", "relatedPublications": 0, "date": [""], "title": ["\"Crystal Structure of the DNA Decamer d(CGCAATTGCG) Complexed with the Minor Groove Binding Drug Netropsin†\""], "relatedDatasets": 1}
46
{"typology": "publication", "publisher": ["Journal of molecular biology", "Elsevier BV"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::0dfc80c3505289eae0a5323b80521c90", "id": {"identifier": "dq890518", "schema": "genbank"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::7985fb8c4e713a899edb7d2995a8f73e", "id": {"identifier": "2j4w", "schema": "pdb"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::cbf60c1009c28322e3dca16bb77a4198", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=17229439&result=sequence_release", "schema": "url"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::f33d521a3c3802798d2c3ed46a42012f", "id": {"identifier": "2j5l", "schema": "pdb"}}], "abstract": "None: Apical membrane antigen 1 (AMA1) has an important, but as yet uncharacterised, role in host cell invasion by the malaria parasite, Plasmodium. The protein, which is quite conserved between Plasmodium species, comprises an ectoplasmic region, a single transmembrane segment and a small cytoplasmic domain. The ectoplasmic region, which can induce protective immunity in animal models of human malaria, is a leading vaccine candidate that has entered clinical trials. The monoclonal antibody F8.12.19, raised against the recombinant ectoplasmic region of AMA1 from Plasmodium vivax, cross-reacts with homologues from Plasmodium knowlesi, Plasmodium cynomolgi, Plasmodium berghei and Plasmodium falciparum, as shown by immunofluorescence assays on mature schizonts. The binding of F8.12.19 to recombinant AMA1 from both P. vivax and P. falciparum was measured by surface plasmon resonance, revealing an apparent affinity constant that is about 100-fold weaker for the cross-reacting antigen when compared to the cognate antigen. Crystal structure analysis of Fab F8.12.19 complexed to AMA1 from P. vivax and P. falciparum shows that the monoclonal antibody recognises a discontinuous epitope located on domain III of the ectoplasmic region, the major component being a loop containing a cystine knot. The structures provide a basis for understanding the cross-reactivity. Antibody contacts are made mainly to main-chain and invariant side-chain atoms of AMA1; contact antigen residues that differ in sequence are located at the periphery of the antigen-binding site and can be accommodated at the interface between the two components of the complex. The implications for AMA1 vaccine development are discussed.", "author": ["Vulliez-Le Normand Brigitte", "Faure Grazyna", "Thomas Alan W", "Kocken Clemens H.M.", "Bentley Graham A.", "Bentley Graham A", "Igonet Sébastien", "Kocken Clemens H M", "Thomas Alan W.", "Riottot Marie-Madeleine"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jmb.2006.12.028"}, {"type": "pbmid", "id": "17229439"}], "id": "50|dedup_wf_001::beff52663f22f98a58c0d1e8f5250692", "relatedPublications": 0, "date": [""], "title": ["\"Cross-reactivity Studies of an Anti-Plasmodium vivax Apical Membrane Antigen 1 Monoclonal Antibody: Binding and Structural Characterisation\""], "relatedDatasets": 3}
47
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::8e2afff48605c614df4b8e007f1a16b1", "id": {"identifier": "3cae", "schema": "pdb"}}], "abstract": "Numerous human disorders are associated with the formation of protein fibrils. The fibril-forming capacity of a protein has been found in recent studies to be determined by a short segment of residues that forms a dual β-sheet, called a steric zipper, in the spine of the fibril. The question arises as to whether a fibril-forming segment, when inserted within the sequence of a globular protein, will invariably cause the protein to form fibrils. Here we investigate this question by inserting the known fibril-forming segment NNQQNY into the globular enzyme, T7 endonuclease I. From earlier studies, we know that in its fibril form, NNQQNY is in an extended conformation. We first found that the inserted NNQQNY stimulates fibril formation of T7 endonuclease I in solution. Thus NNQQNY within T7 endonuclease I can exist in an extended conformation, capable of forming the steric zipper in the core of a fibril. We also found that T7 endonuclease I folds into a decamer that does not form fibrils. We determined the structure of the decamer by X-ray crystallography, finding an unusual oligomer without point group symmetry, and finding that the NNQQNY segments within the decamer adopt two twisted conformations, neither is apparently able to fibrillize. We conclude that twisting of fibril forming sequences from the fully extended conformation, imposed by the context of their placement in proteins, can interfere with fibril formation.", "author": ["Guo Zhefeng", "Eisenberg David"], "localIdentifier": [{"type": "doi", "id": "10.1110/ps.036368.108"}], "id": "50|dli_resolver::bfce0851aed245eab5794daeb06a4dea", "relatedPublications": 0, "date": [""], "title": ["\"The structure of a fibril-forming sequence, NNQQNY, in the context of a globular fold\""], "relatedDatasets": 1}
48
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a874512a8be97f9262676264509d30ad", "id": {"identifier": "10.5517/ccpqfh9", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Weber Edwin", "Schwarzer Anke", "Hauptvogel Ines Maria"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536807013669"}], "id": "50|dli_resolver::68e580311ab873c10f9bb09ada461108", "relatedPublications": 0, "date": [""], "title": ["\"1-Bromo-2-(bromomethyl)naphthalene\""], "relatedDatasets": 1}
49
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1e6bd738b43fb7d2baa777643f3de550", "id": {"identifier": "10.5517/cc6prf1", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Abstract#R##N##R##N#This paper reports on several new optically active organometallic [60]fullerene complexes that contain a chiral (+)-DIOP or (−)-DIOP ligand [DIOP = 2,3-O,O′-isopropylidene-2,3-dihydroxy-1,4-bis(diphenylphosphanyl)butane]. The Mo/W complexes mer-[(η2-C60)M(CO)3{(−)-DIOP}] (1, M = Mo; 2, M = W) and mer-[(η2-C60)M(CO)3{(+)-DIOP}] (3, M = Mo; 4, M = W) were synthesized by a photochemical reaction of a mixture of [M(CO)6], (−)-DIOP or (+)-DIOP and C60 in chlorobenzene in 42−51% yields, whereas the Pd/Pt complexes [(η2-C60)M{(−)-DIOP}] (5, M = Pd; 6, M = Pt) were prepared by a thermal reaction of C60 with [M(PPh3)4], followed by in situ treatment of the intermediate [(η2-C60)M(PPh3)2] with (−)-DIOP, in toluene in > 90% yields. All the new complexes 1−6 were fully characterized by elemental analysis, 1H (31P, 13C) NMR, IR, UV/Vis and circular dichroism (CD) spectroscopy. The structure of [(η2-C60)Pt{(−)-DIOP}] (6) was further confirmed by X-ray diffraction techniques. The electrochemical properties of complexes 1, 2, 5 and 6 were studied in dichloromethane solution. Complexes 1 and 2 display the reversible, four-membered, one-electron reduction sequence typical of fullerene ligands, as well as the reversible (in the cyclic voltammetric time scale) one-electron oxidation of the outer metal fragment. Complexes 5 and 6 are less stable to the same electron transfer processes. EPR measurements suggest that in the different electrogenerated monoanions, the added electrons enter the LUMO orbitals partially contributed by the metal fragment. In addition, they confirm that the instability of the reduction intermediates is due to the release of free C60. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2003)", "author": ["Laschi Franco", "Liu Peng-Chong", "Liu Jin-Ting", "Song Li-Cheng", "Zanello Piero", "Su Fu-Hai", "Wang Guang-Feng", "Hu Qing-Mei", "Fontani Marco"], "localIdentifier": [{"type": "doi", "id": "10.1002/ejic.200300106"}], "id": "50|dli_resolver::f61bd8dbef1eabb1abb23f08c22eebbe", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis, Characterization and Electrochemical Properties of Optically Active 60Fullerene Organotransition Metal Complexesmer-(η2-C60)M(CO)3{(−)-DIOP} (M = Mo, W),mer-(η2-C60)M(CO)3{(+)-DIOP} (M = Mo, W) and (η2-C60)M{(−)-DIOP} (M = Pd, Pt)− Crystal Structure of (η2-C60)Pt{(−)-DIOP}\""], "relatedDatasets": 1}
50
{"publisher": ["Nucleic acids research"], "datasources": [{"completionStatus": "incomplete", "datasourceId": "r3d100010527", "datasourceName": "European Nucleotide Archive"}, {"completionStatus": "complete", "datasourceId": "dli_________::pubmed", "datasourceName": "PubMed"}], "relatedDatasets": 2, "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::85c38a6ca2661fa3855bd67ea44a52f2", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3317277&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::01200e1150d7495c45690a704088e3db", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3317277&result=coding_release", "schema": "url"}}], "abstract": "", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "3317277"}], "author": ["Frank R", "Madern D", "Härtlein M"], "relatedPublications": 0, "id": "50|r3d100010527::fef15570f2372fe59e7bf31cb14ed843", "title": ["Nucleotide sequence of Escherichia coli valyl-tRNA synthetase gene valS."], "typology": "publication"}
51
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5964a0af078687023bc2ad0de426df71", "id": {"identifier": "10.6084/m9.figshare.6164585", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::f65db2f8006ef1e88e7219c57eb39b8c", "id": {"identifier": "10.6084/m9.figshare.6164585.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::f9e8c090e4484392911b49dab91de09a", "id": {"identifier": "10.6084/m9.figshare.6164612.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::a78a892a602f70ce03f2c594aa1368c8", "id": {"identifier": "10.6084/m9.figshare.6164621.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::affecf09e9bb94c63aa47af14c663ec1", "id": {"identifier": "10.6084/m9.figshare.6164621", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::fb4efb5aca57ad1f69fbe7d43a92b27e", "id": {"identifier": "10.6084/m9.figshare.c.4075736", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::fd1a59a11dea7022aceff77998491c03", "id": {"identifier": "10.6084/m9.figshare.6164573.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::7d50c5cf9e8c0240ad3c9f6b8d04b190", "id": {"identifier": "10.6084/m9.figshare.6164600.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::20b7924b9667e3a1b0cc63204d060ba0", "id": {"identifier": "10.6084/m9.figshare.c.4075736.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::99b4488d89e8e9d48ee884addb5c6ad1", "id": {"identifier": "10.6084/m9.figshare.6164612", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2cee7b02ebbdac9c0970d8952bb335fb", "id": {"identifier": "10.6084/m9.figshare.6164573", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::207062a74d7dc7615ff1583a444ed3b2", "id": {"identifier": "10.6084/m9.figshare.6164600", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Eltanany Marwa", "Lühken Gesine", "Molaee Vahid"], "localIdentifier": [{"type": "doi", "id": "10.1186/s13567-018-0533-y"}], "id": "50|dli_resolver::a2860e479c0b32437f8d9b15dc86219f", "relatedPublications": 0, "date": [""], "title": ["First survey on association of TMEM154 and CCR5 variants with serological maedi-visna status of sheep in German flocks"], "relatedDatasets": 12}
52
{"typology": "publication", "publisher": ["Ovid Technologies (Wolters Kluwer Health)"], "doiRels": [{"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::2acdcb4dec617a1c4cf6da0cc0e42bb5", "id": {"identifier": "10.3886/icpsr06153", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::57555a019060011ae07492599fc1116b", "id": {"identifier": "10.3886/icpsr06153.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The association of alcoholism with antisocial personality is important from a research and a therapeutic standpoint. In a sample of urban black men, it was found that those with antisocial personality had a higher rate of alcoholism than those without. In addition, a family history of problem drinking, low educational level, and excessive irritability were also closely associated with alcoholism. The clinical, genetic, and neurophysiological implications of these findings are discussed. Language: en", "author": ["ROBINS LEE", "RICE JOHN", "Lewis Collins, E."], "localIdentifier": [{"type": "doi", "id": "10.1097/00005053-198503000-00006"}], "id": "50|dli_resolver::d1f205c9ec5f409ccb7ca37e5b18b5b2", "relatedPublications": 0, "date": [""], "title": ["Association of Alcoholism with Antisocial Personality in Urban Men"], "relatedDatasets": 2}
53
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::de8ff7157e0c59e8ded673f8d728df7a", "id": {"identifier": "10.5517/ccdc.csd.cc1nrf2x", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::18e688c154b49bdd626378b6b34ca5dd", "id": {"identifier": "10.5517/ccdc.csd.cc1nrggb", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e422d2dc257c33ddf6220a33abf5dc03", "id": {"identifier": "10.5517/ccdc.csd.cc1p9w40", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::55d09cc0615d1b8e2c4254a7c1faf6c6", "id": {"identifier": "10.5517/ccdc.csd.cc1p9w3z", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "<p>In the trigonal CCl<sub>4</sub><italic>quasi</italic>racemic clathrate, space group <italic>R</italic>3, formed from host components <italic>S</italic>-(−)-Dianin's compound, <bold>4</bold>, and its (+)-2<italic>R</italic>,4<italic>R</italic> 2-<italic>nor</italic> methyl analogue, <bold>2</bold>, the unprecedented complete ordering of a C–Cl bond of the guest with respect to the <italic>c</italic>-axial direction and the participation of an unexpected host conformation is reported for the first time.</p>", "author": ["Frampton Christopher S.", "Gall James H.", "MacNicol David D."], "localIdentifier": [{"type": "doi", "id": "10.1039/c7ce01275f"}], "id": "50|dli_resolver::e733fc80590e1b06773cb86150c48df1", "relatedPublications": 0, "date": [""], "title": ["\"Total CCl4 guest alignment in a quasiracemic clathrate closely related to Dianin's compound\""], "relatedDatasets": 4}
54
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::a22314559382fb701970fc09fd8a516c", "id": {"identifier": "10.3886/icpsr02038.v5", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Hansen, Ginger L."], "localIdentifier": [{"type": "icpsr", "id": "41007"}], "relatedPublications": 0, "title": ["Equal, is it just a word? A focus on women's sentencing"], "id": "50|r3d100010255::bef5d04dc5acc5a5ccf7a9f24a5d361c"}
55
{"typology": "publication", "publisher": ["Fish & shellfish immunology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::87a4859658e26cd4f45fe0dda459813b", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10938738&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::35e77deceb2da4a89f3ee762ea60641f", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10938738&result=coding_release", "schema": "url"}}], "abstract": "None: Although transforming growth factor-beta (TGF-beta) genes have been described in several species of fish, whether an individual fish possesses more than one member of this multigene family has yet to be established. During this study, three DNA fragments were isolated from the plaice (Pleuronectes platessa) by homology cloning. Sequence analysis revealed that each fragment closely resembled a distinct member of the TGF-beta family. Each putative plaice TGF-beta clustered individually with a different TGF-beta subgroup during phylogenetic analysis suggesting that these may be the plaice homologues of vertebrate TGF-beta 1/4/5, -beta 2 or -beta 3. The first direct evidence for the presence of multiple TGF-beta genes in a single fish species is presented.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "10938738"}], "author": ["Laing K J", "Secombes C J", "Cunningham C"], "relatedPublications": 0, "id": "50|r3d100010527::6166e6e5ca73d97ccec10e0d39ecbffa", "title": ["Genes for three different isoforms of transforming growth factor-beta are present in plaice (Pleuronectes platessa) DNA."], "relatedDatasets": 2}
56
{"typology": "publication", "publisher": ["Veterinary research"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b34c1a37fc4808207e6e81041c3bafb8", "id": {"identifier": "gu124628", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5100f81be4a103e7c3b67c2f21c7a93d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22136667&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5180718f35d199623e3dc28ad51ef99e", "id": {"identifier": "gu124629", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::478f77a56dd1b1024153348069076452", "id": {"identifier": "gu124615", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6fc0eb053ed318827e775608fa8b63eb", "id": {"identifier": "dq192504", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::d75a1593c76b1b0c2e061fd188fd5bcf", "id": {"identifier": "ay120911", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::aacdd72e9c242d04dbcf1674f8c8a213", "id": {"identifier": "ab514090", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::24f772168d64ba6e239f3001f46e4f33", "id": {"identifier": "af308600", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7edfcbeee7c6ecf6181276282f55a105", "id": {"identifier": "gu124618", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::bbe97214b4717f47616c11e8b1a3ba9b", "id": {"identifier": "gq983359", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5a5fca577d0dbe67cf89b61cf3adf046", "id": {"identifier": "dq192502", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::dd7a42bccbb1b9b42b3245594bba6d96", "id": {"identifier": "dq192506", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3593bf77c6336e0ff4baf8fa1ccdec01", "id": {"identifier": "af093490", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::68ba6ae0e4cd3b767a185d3cc468f7d9", "id": {"identifier": "gu124617", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::8de57f7b115988d58952cac758cc45fc", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22136667&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::8584e9819080b493c118abb6af49c8f9", "id": {"identifier": "gu124620", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::94a0ea97b23892b6a1b5b83e29dcb665", "id": {"identifier": "dq192505", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::0131f51168f313d5a5ead98658617054", "id": {"identifier": "gu124621", "schema": "ena"}}], "abstract": "None: Feces from 142 animals were collected on 15 farms in the region of Brittany, France. Each sample was directly collected from the rectum of the animal and identified with the ear tag number. Animals were sampled three times, at 5, 15 and 22 weeks of age. After DNA extraction from stool samples, nested PCR was performed to amplify partial 18S-rDNA and 60 kDa glycoprotein genes of Cryptosporidium. The parasite was detected on all farms. One hundred out of 142 calves (70.4%) were found to be parasitized by Cryptosporidium. Amplified fragments were sequenced for Cryptosporidium species identification and revealed the presence of C. parvum (43.8%), C. ryanae (28.5%), and C. bovis (27%). One animal was infected with Cryptosporidium ubiquitum. The prevalence of these species was related to the age of the animal. C. parvum caused 86.7% of Cryptosporidium infections in 5-week-old calves but only 1.7% in 15-week-old animals. The analysis of the results showed that animals could be infected successively by C. parvum, C. ryanae, and C. bovis for the study period. C. parvum gp60 genotyping identifies 6 IIa subtypes of which 74.5% were represented by IIaA15G2R1. This work confirms previous studies in other countries showing that zoonotic C. parvum is the dominant species seen in young calves.", "author": ["Leruste Hélène", "Dei-Cas Eduardo", "Patrice Halama", "Hélène Leruste", "Hammouma-Ghelboun Ourida", "Ourida Hammouma-Ghelboun", "Anne Follet-Dumoulin", "Gabriela Certad", "Follet-Dumoulin Anne", "Eduardo Dei-Cas", "Guyot Karine", "Follet Jérôme", "Jérôme Follet", "Halama Patrice", "Certad Gabriela", "Karine Guyot"], "localIdentifier": [{"type": "pmid", "id": "22136667"}, {"type": "pbmid", "id": "22136667"}, {"type": "doi", "id": "10.1186/1297-9716-42-116"}], "id": "50|dedup_wf_001::e0b0ea689c4ecae81da478a76661deb3", "relatedPublications": 0, "date": ["2011-12-02"], "title": ["Cryptosporidium infection in a veal calf cohort in France: molecular characterization of species in a longitudinal study."], "relatedDatasets": 18}
57
{"typology": "publication", "publisher": ["Marine biotechnology (New York, N.Y.)"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::52b1e019369bfce6385f2b703b219ffd", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18330643&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c9bb4787209793bcf4e08d39478a81f5", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18330643&result=sequence_release", "schema": "url"}}], "abstract": "None: Color morphs of the temperate, nonsymbiotic corallimorpharian Corynactis californica show variation in pigment pattern and coloring. We collected seven distinct color morphs of C. californica from subtidal locations in Monterey Bay, California, and found that tissue- and color-morph-specific expression of at least six different genes is responsible for this variation. Each morph contains at least three to four distinct genetic loci that code for these colors, and one morph contains at least five loci. These genes encode a subfamily of new GFP-like proteins, which fluoresce across the visible spectrum from green to red, while sharing between 75% to 89% pairwise amino-acid identity. Biophysical characterization reveals interesting spectral properties, including a bright yellow protein, an orange protein, and a red protein exhibiting a \"fluorescent timer\" phenotype. Phylogenetic analysis indicates that the FP genes from this species evolved together but that diversification of anthozoan fluorescent proteins has taken place outside of phylogenetic constraints, especially within the Corallimorpharia. The discovery of more examples of fluorescent proteins in a non-bioluminescent, nonsymbiotic anthozoan highlights possibilities of adaptive ecological significance unrelated to light regulation for algal symbionts. The patterns and colors of fluorescent proteins in C. californica and similar species may hold meaning for organisms that possess the visual pigments to distinguish them.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "18330643"}, {"type": "doi", "id": "10.1007/s10126-007-9072-7"}], "author": ["Schnitzler Christine E", "McCord Robert", "Matysik Artur", "Haddock Steven H D", "Keenan Robert J", "Christianson Lynne M"], "relatedPublications": 0, "id": "50|r3d100010527::fc5000720cac7783c60fc19670c4464a", "title": ["Spectral diversity of fluorescent proteins from the anthozoan Corynactis californica."], "relatedDatasets": 2}
58
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::60f477aecf14cb1028e53a4019df89f6", "id": {"identifier": "10.5517/ccsbt74", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4d682687a3a760160a2389c3e013d55b", "id": {"identifier": "10.5517/ccrmssx", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4b2848d6e50f573b959013abd0a0e86f", "id": {"identifier": "10.5517/ccsbt63", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Calixarene-capped Co-32 clusters are constructed by a sodalite Co-24(II) cage and an encapsulated Co-8(III) cube. The spherical units are arranged into three isomeric structures, two of which are stacked by the bcc lattices and the third of which is assembled by the cubic closest packing of the spherical units.", "author": ["Bi Yanfeng", "Wang Xiaofei", "Liao Wuping", "Wang Xiu-Teng", "Gao Song", "Wang Xinwu", "Zhang Hongjie"], "localIdentifier": [{"type": "doi", "id": "10.1021/ja9034939"}], "id": "50|dli_resolver::37d4824fcdd527b43ad94aa02e4cc52c", "relatedPublications": 0, "date": [""], "title": ["\"A {Co32} Nanosphere Supported byp-tert-Butylthiacalix4arene\""], "relatedDatasets": 3}
59
{"typology": "publication", "publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f64e3d30808551895df8ec67639f1331", "id": {"identifier": "10.6084/m9.figshare.5010839", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::2d3ada4fa196cb47ecdc36df3f90eeab", "id": {"identifier": "10.6084/m9.figshare.5010839.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "AbstractForest resources conserved at Mt. Kasigau, an Eastern Arc peak in southeastern Kenya, show a complex legacy of unique cultural adaptations influenced by profound effects from outside interventions. We compiled place-name maps, landscape narratives, and semi-structured interviews (2002–2015) to spatially interpret a dynamic history of biogeographical change since early settlement by the Kasigau Taita, influenced by regional trade networks, colonial ‘war-time’ authority, export markets, conservation enterprises, and a persistently growing need for incomes to offset livelihood insecurity. Adaptive co-management, if empowered through local participation, needs to better recognize and account for extra-local influences on livelihood strategies and their ecological effects.", "author": ["Maingi John K.", "Medley Kimberly E.", "Maingi Kenny", "Henkin Michael"], "localIdentifier": [{"type": "doi", "id": "10.1080/19376812.2017.1325757"}], "id": "50|dli_resolver::cbf2715aea83b66924f91c0345f49508", "relatedPublications": 0, "date": [""], "title": ["\"Embedded histories and biogeographic interpretations of forest diversity at Mt. Kasigau, Kenya\""], "relatedDatasets": 2}
60
{"typology": "publication", "publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::6fcdf4fa2904c82e6681490d5548b074", "id": {"identifier": "10.3886/icpsr08929", "schema": "doi"}}, {"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::cae88d27aa3a3c48421ba34e20ce70fa", "id": {"identifier": "10.3886/icpsr08929.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The defendant's prior criminal record has been shown to be an important factor in explaining sentencing decisions and in accounting for sentencing disparity. Yet little attention has been paid to the appropriate measurement of this variable. Researchers have not agreed on a common measure, but have used misdemeanor or felony arrests, misdemeanor or felony convictions, prison terms, or some combination of these. This paper examined the impact of various measure of prior record on sentences for male and female defendants convicted of violent and nonviolent crimes. We found that prior incarceration had a strong and consistent impact on sentence severity, but that prior arrest and prior conviction had much weaker effects. We also found that the effect of prior record on judge's decisions to sentence and incarcerate varied by gender and that the choice of a measure influenced conclusions concerning the existence and extent of gender discrimination in sentencing.", "author": ["Welch Susan", "Welch, S.", "Spohn, C.", "Spohn Cassia"], "localIdentifier": [{"type": "doi", "id": "10.1080/07418828700089331"}], "id": "50|dedup_wf_001::20d78a468a5f421ea25090847acc598d", "relatedPublications": 0, "date": [""], "title": ["The Effect of Prior Record in Sentencing Research: An Examination of the Assumption That Any Measure is Adequate"], "relatedDatasets": 2}
61
{"publisher": ["Molecular immunology"], "datasources": [{"completionStatus": "incomplete", "datasourceId": "r3d100010527", "datasourceName": "European Nucleotide Archive"}, {"completionStatus": "complete", "datasourceId": "dli_________::pubmed", "datasourceName": "PubMed"}], "relatedDatasets": 2, "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::0d6af2ab481bdc6d57850be8a84fc4b5", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9307062&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::00c6bb09db2b3f9b341bf2e842ba2672", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9307062&result=coding_release", "schema": "url"}}], "abstract": "None: The human germline Vlambda repertoire consists of about 30 functional genes that have been classified into 10 families on the basis of homologies in nucleotide sequences that encode approximately the first 96 to 104 residues of lambda light chains. One family, termed Vlambda5, is of special interest because the lambda light chain products of these genes have unique structural features. We have now isolated from genomic DNA one member of this family, designated IGLV5-1, using as a molecular probe a partial Vlambda5-germline-gene fragment generated by polymerase chain reaction. IGLV5-1 contains all the requisite elements of a potentially functional gene, including a Vlambda exon with an open reading frame specifying 104 residues. A Vlambda5-related cDNA (ZW) was also cloned from a bone marrow-derived plasma-cell population obtained from a patient with light-chain-associated (AL) amyloidosis. Comparison of the predicted protein sequences encoded by the IGLV5-1-germline gene, cDNA ZW, and three other reported Vlambda5-related cDNAs with those of the deduced or expressed products of the other nine known human Vlambda-gene families revealed that Vlambda5 proteins contain distinctive primary structural features. These include the presence within the second complementarity determining region (CDR2) and the third framework region (FR3) of 11 and 34 amino acids, respectively, rather than the 7 and 32 that occur in the most commonly expressed Vlambda1-, Vlambda2- and Vlambda3-type light chains. Although certain of the Vlambda-gene families encode either an elongated CDR2 or FR3, Vlambda5 proteins are remarkable in that they have additional residues in both regions of the molecule. In this respect, these polypeptides are most similar to surrogate light-chain-associated human and mouse VpreB components that also have these unusual primary structural features. Further, the four additional CDR2 residues and the two-residue FR3 insertion have been found among lambda-type light chains of certain non-mammalian species. The evolutionarily conserved nature of human Vlambda5-related genes and, in particular, the presumably novel tertiary structural effects induced by the unique features of the lambda light chains encoded by these elements suggest that the Vlambda5-gene family has biological and functional importance.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9307062"}], "author": ["Ringelberg C", "Klebig M L", "Weiss D T", "Ch'ang L Y", "Schell M", "Solomon A"], "relatedPublications": 0, "id": "50|r3d100010527::002dc8d146c4e94c11075fc4f7015bf1", "title": ["Identification and characterization of a human Vlambda5 (T1) germline gene that encodes structurally unique lambda light chains."], "typology": "publication"}
62
{"typology": "publication", "publisher": ["Blood"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::01283d36f1a2c6ef4322ab7669ce1e24", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9166829&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::d598f75f91b46091f6f149e8d2f68c09", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9166829&result=sequence_release", "schema": "url"}}], "abstract": "None: Mammalian globin gene expression is activated through NF-E2 elements recognized by basic-leucine zipper proteins of the AP-1 superfamily. The specificity of NF-E2 DNA binding is determined by several nucleotides adjacent to a core AP-1 motif, comprising a recognition site for transcription factors of the Maf subfamily. Earlier work proposed that p18(MafK) forms a heterodimer with hematopoietic-specific protein p45 NF-E2 to activate transcription through NF-E2 sites. However, there was no direct evidence that p18(MafK) serves this function in vivo; in fact, mice lacking p18(MafK) have no phenotype. Here we describe a novel cDNA clone that encodes the human homolog of chicken MafG. Human MafG heterodimerizes with p45 NF-E2 and binds DNA with specificity identical to that of purified NF-E2 DNA binding activity. A tethered heterodimer of p45 and MafG is fully functional in supporting expression of alpha- and beta-globin, and in promoting erythroid differentiation in CB3, a p45-deficient mouse erythroleukemia cell line. These results indicate that human MafG can serve as a functional partner for p45 NF-E2, and suggest that the p45/MafG heterodimer plays a role in the regulation of erythropoiesis.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9166829"}], "author": ["Kim M J", "Blank V", "Andrews N C"], "relatedPublications": 0, "id": "50|r3d100010527::2f214191962b5bdb7a0d1a0d742b355f", "title": ["Human MafG is a functional partner for p45 NF-E2 in activating globin gene expression."], "relatedDatasets": 2}
63
{"typology": "publication", "publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::f437fb9fe8f866cabba5ff9462f48b64", "id": {"identifier": "10.6084/m9.figshare.5436448.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::67f2e93bd775c4fa45100ac909c923e4", "id": {"identifier": "10.6084/m9.figshare.5436448", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Qiao Qianglong", "Zeng Linghan", "Chen Xu", "Stevenson Mark A."], "localIdentifier": [{"type": "doi", "id": "10.1080/0269249x.2017.1371082"}], "id": "50|dli_resolver::cf6646682ed86fec29e2928bcace79d0", "relatedPublications": 0, "date": [""], "title": ["Diatom distribution in an alpine basin (central China) in relation to environmental factors and substrata"], "relatedDatasets": 2}
64
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::12bb23fbd97a59af2c21347c2349bea4", "id": {"identifier": "10.5517/ccsjzr0", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "In the title compound, C13H9BrO2, the benzene and furan rings form a dihedral angle of 44.35 (14)°. The crystal packing exhibits no significantly short inter­molecular contacts.", "author": ["Li Guang-Jun", "Qin Jian-Chun", "Zhang Ya-Mei", "Gao Jin-Ming"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536809014299"}], "id": "50|dli_resolver::0c5124166e5609dc9e9c1ea21e06a1db", "relatedPublications": 0, "date": [""], "title": ["\"(E)-1-(4-Bromophenyl)-3-(2-furyl)prop-2-en-1-one\""], "relatedDatasets": 1}
65
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::91258a6a0c0397b4ad0bc9c22e23fa86", "id": {"identifier": "aa275288", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::d7d8d5ec784bb8743b2b9d89e14f66db", "id": {"identifier": "aa267296", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::be5f7e8cb4a4ea6d1db9c67cb6efcb17", "id": {"identifier": "aa051583", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::1dea929b6539ee3fa528422d8fd8f66a", "id": {"identifier": "y07836", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::675d84060bd18742a156e6a7a4f943c6", "id": {"identifier": "aa689977", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::2c4ca252c52d95d99f301e9a3eed4c6e", "id": {"identifier": "u42386", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::37f208bf6bd3f18c4df951e81cb16cbc", "id": {"identifier": "l21973", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7df2f87fed5b1bba5cb7cc96d9882ae3", "id": {"identifier": "x03919", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b0bffc90d6929ca9d697dec25ad4c544", "id": {"identifier": "c76791", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::f3ad281f40e028af338faea0a4e0280a", "id": {"identifier": "z26580", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::f0fc2a2ab05ca16cd020e905f0600dde", "id": {"identifier": "u80932", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::28d1128f501ec38fdd41f4ebeaad5155", "id": {"identifier": "aa166088", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::24b4c45d39b06bf2cca72746421e70b7", "id": {"identifier": "aa174970", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::1903b242fee8a96ce3a9d69692c1677f", "id": {"identifier": "af004105", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ce4a1efde5a1a3883b7db208d5127b99", "id": {"identifier": "w78604", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::aed735cf152998a8ede56cbbeb7c27e6", "id": {"identifier": "w08016", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3be70ad727134fda9885c39afc326348", "id": {"identifier": "x66032", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::f58097af94127ccb1ecb3d4d0f2bb9b6", "id": {"identifier": "m14233", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::cb8166ff00859d6cdb8364382d1bd719", "id": {"identifier": "x72310", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::9b17a5433347c2e606924763d3189611", "id": {"identifier": "aa050055", "schema": "ena"}}], "abstract": "", "author": ["Isaac Kohane", "Rowitch, David H.", "Qing Zhao", "Alvin Kho", "Anna Marie Kenney", "Dong-in Yuk Di"], "localIdentifier": [{"type": "pmid", "id": "11960025"}], "id": "50|pubmed______::de7389f99af162b5fe34b860e6fac0e6", "relatedPublications": 0, "date": ["2002-04-01"], "title": ["Identification of genes expressed with temporal-spatial restriction to developing cerebellar neuron precursors by a functional genomic approach."], "relatedDatasets": 26}
66
{"typology": "publication", "publisher": ["Biochimica et biophysica acta"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 1, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::df6908d8d2fafd547b63d72b4d6e42b3", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24361608&result=sequence_release", "schema": "url"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::eef355c4073376a3a3b3b9ad2edeef87", "id": {"identifier": "2w12", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::280a08d60b74e05df9402ab0f92a9ad7", "id": {"identifier": "ef442045.1", "schema": "ncbi-n"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::e3f10ee76866086a9ff3607236c439a2", "id": {"identifier": "3k7n", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::141294298cebb6a663601e58ea8dde0f", "id": {"identifier": "ef442046.1", "schema": "ncbi-n"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::55a1805164b098aa8aad7730b4c1d5ba", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24361608&result=coding_release", "schema": "url"}}], "abstract": "BACKGROUND: The venoms of several scorpion species have long been associated with pancreatitis in animal models and humans. Antarease, a Zn-metalloprotease from Tityus serrulatus, is able to penetrate intact pancreatic tissue and disrupts the normal vesicular traffic necessary for secretion, so it could play a relevant role in the onset of acute pancreatitis. METHODS: The cDNA libraries from five different scorpion species were screened for antarease homologs with specific primers. The amplified PCR products were cloned and sequenced. A structural model was constructed to assess the functionality of the putative metalloproteases. A phylogenetic analysis was performed to identify clustering patterns of these venom components. RESULTS: Antarease-like sequences were amplified from all the screened cDNA libraries. The complete sequence of the antarease from T. serrulatus was obtained. The structural model of the putative antarease from Tityus trivittatus shows that it may adopt a catalytically active conformation, sharing relevant structural elements with previously reported metalloproteases of the ADAM family. The phylogenetic analysis reveals that the reported sequences cluster in groups that correlate with the geographical localization of the respective species. CONCLUSIONS: Antareases are ubiquitous to a broad range of scorpion species, where they could be catalytically active enzymes. These molecules can be used to describe the evolution of scorpion venoms under different ecogeographic constrains. GENERAL SIGNIFICANCE: For the first time the complete sequence of the antareases is reported. It is demonstrated that antareases are common in the venom of different scorpion species. They are now proposed as targets for antivenom therapies.", "author": ["Schwartz Elisabeth Ferroni", "Rendón-Anaya Martha", "Possani Lourival Domingos", "Ortiz Ernesto", "Rego Solange Cristina"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.bbagen.2013.12.012"}, {"type": "pbmid", "id": "24361608"}], "id": "50|dedup_wf_001::27b71858ebcee2ec470377488079116b", "relatedPublications": 0, "date": ["2014"], "title": ["Antarease-like Zn-metalloproteases are ubiquitous in the venom of different scorpion genera"], "relatedDatasets": 8}
67
{"typology": "publication", "publisher": ["Bentham Science Publishers Ltd."], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c38cee3569b68f92796382a57e6636ae", "id": {"identifier": "10.5517/cc12h6tl", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::48b3b9c70ae117f07f5686ff37e48103", "id": {"identifier": "10.5517/cc12h6sk", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Yang Ping", "Wang Fasong", "Wang Yan", "Gao Hui", "Song Xinjian"], "localIdentifier": [{"type": "doi", "id": "10.2174/1570178611666140609225422"}], "id": "50|dli_resolver::a750498f8b69ba732eb7cd4defadfa2a", "relatedPublications": 0, "date": [""], "title": ["\"Facile Synthesis of Novel N<sup>4</sup>-Substituted 2-(Trifluoromethyl)-tetrahydrobenzothieno 2,3-dpyrimidine Derivatives\""], "relatedDatasets": 2}
68
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6736a77d0b1dfacf2e5b377b64be63b0", "id": {"identifier": "10.5061/dryad.p1r40", "schema": "doi"}}, {"relationSemantic": "references", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6736a77d0b1dfacf2e5b377b64be63b0", "id": {"identifier": "10.5061/dryad.p1r40", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Summary 1. Neonate survival is a key life history trait, yet remains challenging to measure in wild populations because neonates can be difficult to capture at birth. Estimates of survival from neonates that are opportunistically captured might be inaccurate because some individuals die before sampling, resulting in data that are left truncated. The resulting overestimation of survival rates can further affect ecological inference through biased estimates of covariate effects in survival models, yet is not addressed in most studies of animal survival. Here, we quantify the effects of left truncation on survival estimates and subsequent ecological inference. 2. Vaginal implant transmitters (VITs) enable capture of ungulates at birth, yielding data without left truncation. The effects of left truncation on survival estimation were quantified using age-dependent survival models for VIT and opportunistically captured neonatal deer. Differences in daily survival rates (DSRs) and cumulative survival probability were calculated for the first 70 days of life. In addition, left truncation was simulated by removing fawns that died during the first 1 or 2 days of life from the VIT-caught sample, isolating the effect of left truncation. 3. Cumulative probability of survival during the first 70 days of life was overestimated by 7–23% for fawns caught opportunistically compared with those caught by VIT, depending on model design. Differences in DSRs were large at age 1 day, but had converged by age 30 days. Simulated left truncation resulted in overestimates of survival of up to 31%. Model selection and covariate coefficients were strongly affected by left truncation, producing spurious ecological inference, including changes to sign and/or magnitude of inferred effects of all covariates. 4. We recommend (i) every effort be made to capture neonates; (ii) consistent capture methods, using at least in part non-truncating techniques, be implemented across years and study areas; and (iii) exclusion of left-truncated data from survival estimates until DSRs converge with those calculated from non-truncated data. This work emphasizes the importance of accounting for left truncation in survival estimation for any species with strong age-dependent survival in order to prevent biased conclusions produced by sampling method rather than true ecological effects.", "author": ["Person David K.", "Lindberg Mark S.", "Gilbert Sophie L.", "Hundertmark Kris J."], "localIdentifier": [{"type": "doi", "id": "10.1111/2041-210x.12234"}], "id": "50|dli_resolver::ac3a7e434b822532c507c119bb0dedb0", "relatedPublications": 0, "date": [""], "title": ["\"Dead before detection: addressing the effects of left truncation on survival estimation and ecological inference for neonates\""], "relatedDatasets": 2}
69
{"typology": "publication", "publisher": ["Genome announcements"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::a3bb64790e88585e50568e1aacfd3b05", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26358608&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::d44874cdf3c4d2b2a376843d4ba1d372", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26358608&result=study", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::90fff5a5a3144fe5834d7855a0c0c11c", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26358608&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::aedd6ab999269d86de872345da5f7684", "id": {"identifier": "cp012027", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::550d38c9f442de475fa0387c604ebe5e", "id": {"identifier": "cp012028", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::335bc9f8e83c19b63d1fbc970d78c68b", "id": {"identifier": "cp012026", "schema": "ena"}}], "abstract": "None: Neisseria gonorrhoeae, the etiological agent that causes the sexually transmitted infection gonorrhea, is a significant public health concern due to the emergence of antimicrobial resistance. We report the complete genome sequences of three reference isolates with varied antimicrobial susceptibility that will aid in elucidating the genetic mechanisms that confer resistance.", "author": ["Jeanine, Abrams A.", "Nicholas, Robert A.", "Trees, David L.", "Nicholas Robert A", "Trees David L", "Jeanine Abrams, A."], "localIdentifier": [{"type": "pbmid", "id": "26358608"}, {"type": "pmid", "id": "26358608"}, {"type": "doi", "id": "10.1128/genomea.01052-15"}], "id": "50|dedup_wf_001::81587d3414e683eee3c5fbef2f5e70f9", "relatedPublications": 0, "date": ["2015-09-10"], "title": ["Complete Genome Sequences of Three Neisseria gonorrhoeae Laboratory Reference Strains, Determined Using PacBio Single-Molecule Real-Time Technology."], "relatedDatasets": 6}
70
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8861f95182d98a96180aa7b95a7b77e5", "id": {"identifier": "10.5517/cc11q5nl", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "An open-framework gallium borate with intrinsic photocatalytic activities to water splitting has been discovered. Small inorganic molecules, H3BO3 and H3B3O6, are confined inside structural channels by multiple hydrogen bonds. It is the first example to experimentally show the structural template effect of boric acid in flux synthesis.", "author": ["Zhou Zhengyang", "Cong Rihong", "Yang Jia", "Yang Tao", "Jing Yan", "Sun Junliang", "Gao Wenliang", "Yang Dingfeng", "Lin Jianhua"], "localIdentifier": [{"type": "doi", "id": "10.1021/ic403175w"}], "id": "50|dli_resolver::31e1924a70ded0513e7c096c1320ca56", "relatedPublications": 0, "date": [""], "title": ["\"Open-Framework Gallium Borate with Boric and Metaboric Acid Molecules inside Structural Channels Showing Photocatalysis to Water Splitting\""], "relatedDatasets": 1}
71
{"typology": "publication", "publisher": ["Journal of bacteriology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::bd492f72ca9456b0dd1c92eea1a8a7cf", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=15375143&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::7c8df76ac65bd2629260acd57ecd4792", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=15375143&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::e36c1220ac2fc603962c87ab440b7e2b", "id": {"identifier": "ay312509", "schema": "ena"}}], "abstract": "None: Analysis of two exopolysaccharide-deficient mutants of Rhizobium leguminosarum, RBL5808 and RBL5812, revealed independent Tn5 transposon integrations in a single gene, designated exo5. As judged from structural and functional homology, this gene encodes a UDP-glucose dehydrogenase responsible for the oxidation of UDP-glucose to UDP-glucuronic acid. A mutation in exo5 affects all glucuronic acid-containing polysaccharides and, consequently, all galacturonic acid-containing polysaccharides. Exo5-deficient rhizobia do not produce extracellular polysaccharide (EPS) or capsular polysaccharide (CPS), both of which contain glucuronic acid. Carbohydrate composition analysis and nuclear magnetic resonance studies demonstrated that EPS and CPS from the parent strain have very similar structures. Lipopolysaccharide (LPS) molecules produced by the mutant strains are deficient in galacturonic acid, which is normally present in the core and lipid A portions of the LPS. The sensitivity of exo5 mutant rhizobia to hydrophobic compounds shows the involvement of the galacturonic acid residues in the outer membrane structure. Nodulation studies with Vicia sativa subsp. nigra showed that exo5 mutant rhizobia are impaired in successful infection thread colonization. This is caused by strong agglutination of EPS-deficient bacteria in the root hair curl. Root infection could be restored by simultaneous inoculation with a Nod factor-defective strain which retained the ability to produce EPS and CPS. However, in this case colonization of the nodule tissue was impaired.", "author": ["Van Brussel Anton A N", "Logman, Trudy J.", "Mu-Yun Gao", "Carlson Russell W", "Laus, Marc C.", "Laus Marc C", "Carlson, Russell W.", "Brussel, Anton A. N.", "Kijne Jan W", "Azadi Parastoo", "Parastoo Azadi", "Logman Trudy J", "Gao Mu-Yun", "Kijne, Jan W."], "localIdentifier": [{"type": "pbmid", "id": "15375143"}, {"type": "pmid", "id": "15375143"}], "id": "50|dedup_wf_001::bddb75b5ef0f071d79ce1091f4e45ee7", "relatedPublications": 0, "date": ["2004-10-01"], "title": ["Involvement of exo5 in production of surface polysaccharides in Rhizobium leguminosarum and its role in nodulation of Vicia sativa subsp. nigra."], "relatedDatasets": 3}
72
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::7d4cb2763d17ed5d05a533e08faff117", "id": {"identifier": "10.5517/ccvrx1j", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2de0b9f2fee4e73977b1907dc587e691", "id": {"identifier": "10.5517/ccvrx2k", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "A general route for the synthesis of novel NHC stabilized nickel bis(silyl) and nickel hydrido silyl complexes is presented. The reaction of [Ni2(iPr2Im)4(COD)] 1 (iPr2Im = 1,3-di-isopropyl-imidazolin-2-ylidene) with hydrosilanes HnSiR4-n leads to complexes of the type [Ni(iPr2Im)2(SiHn-1R4-n)(H)] or [Ni(iPr2Im)2(SiHn-1R4-n)2].", "author": ["Radius Udo", "Zell Thomas", "Radacki Krzysztof", "Schaub Thomas"], "localIdentifier": [{"type": "doi", "id": "10.1039/c0dt01442g"}], "id": "50|dli_resolver::0b7480e8d136ff71d34dc75604b23790", "relatedPublications": 0, "date": [""], "title": ["\"Si–H Activation of hydrosilanes leading to hydrido silyl and bis(silyl) nickel complexes\""], "relatedDatasets": 2}
73
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::eac8804e3e36fd152ff8d239e5da72a8", "id": {"identifier": "kf285999", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::358ac9d095392a69e9732bd424262399", "id": {"identifier": "gu073316", "schema": "ncbi-n"}}], "abstract": "", "title": ["Identification of a C-type lectin from"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.aspen.2017.03.010"}], "id": "50|elsevier____::b99d56a2afdeaf4fec06a8608bef3f53", "relatedPublications": 0, "date": ["2017"], "relatedDatasets": 2}
74
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::0b9899516bea7a78290c222c123bdd5d", "id": {"identifier": "1t3b", "schema": "pdb"}}], "abstract": "Bacterial DsbC proteins are involved in rearranging or reducing mismatched disulfide bonds folding within the periplasm. The X-ray structure of the enzyme from Haemophilus influenzae has been solved and compared with the known structure of the Escherichia coli protein. The proteins act as V-shaped dimers with a large cleft to accommodate substrate proteins. The dimers are anchored by a small N-­terminal domain, but have a flexible linker region which allows the larger C-terminal domain, with its reactive sulfhydryls, to clamp down on substrates. The overall folds are very similar, but the comparison shows a wider range of hinge motions than previously thought. The crystal packing of the H. influenzae protein allows the movement of the N-­terminal domain with respect to the C-terminal domain through motions in the flexible hinge, generating high thermal parameters and unusually high anisotropy in the crystallographic data.", "author": ["Zhang Man", "Monzingo Arthur F.", "Georgiou George", "Segatori Laura", "Robertus Jon D."], "localIdentifier": [{"type": "doi", "id": "10.1107/s0907444904014593"}], "id": "50|dli_resolver::2a7393e2d700154c1f94691cd30971ce", "relatedPublications": 0, "date": [""], "title": ["\"Structure of DsbC fromHaemophilus influenzae\""], "relatedDatasets": 1}
75
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "pubmed______", "datasourceId": ""}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::640224fb49f0e29ad7b1df374b2b5416", "id": {"identifier": "1l0y", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::96a0df72bc45ca4e3b21fd87f9d00bcd", "id": {"identifier": "1ktk", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::cdeb7afab414c32d1c131737bd8f4adb", "id": {"identifier": "1l0x", "schema": "pdb"}}], "abstract": "", "author": ["Ra, Mariuzza", " Karjalainen K", " Li H", "Ej, Sundberg", " Tormo J", "As, Llera", "Jk, Mccormick", "Pm, Schlievert"], "localIdentifier": [{"type": "pubmedid", "id": "12015151"}], "id": "50|dli_resolver::81777f9b12a76dc0d681722237fe883e", "relatedPublications": 0, "date": [""], "title": ["Structures of two streptococcal superantigens bound to TCR beta chains reveal diversity in the architecture of T cell signaling complexes."], "relatedDatasets": 3}
76
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::7fea0a39d31bf5a2ae702c26ee025902", "id": {"identifier": "10.3886/icpsr03546.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Durate, Yeda Aparecida Oliveira", "Lima, Fernao D. D.", "Lebrao, Maria L."], "localIdentifier": [{"type": "icpsr", "id": "67617"}], "relatedPublications": 0, "title": ["The contribution of living arrangements in the provision of care for elderly persons with functional impairments in Sao Paulo, Brazil"], "id": "50|r3d100010255::15ddf8173cfab8f1a7a7e0ed98805808"}
77
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::1447df3ffbb203477203d215db597676", "id": {"identifier": "10.3886/icpsr02876", "schema": "url"}}, {"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::44e1b09f8e47643ecd20fefeb04fecf8", "id": {"identifier": "10.3886/icpsr03028.v1", "schema": "url"}}], "abstract": "The relationship between hate group activity and hate crime is theoretically ambiguous. Hate groups may incite criminal behavior in support of their beliefs. On the other hand, hate groups may reduce hate crime by serving as a forum for members to verbally vent their frustrations or as protection from future biased violence. I find that the presence of an active white supremacist hate group chapter is associated with an 18.7 percent higher hate crime rate. White supremacist groups are not associated with the level of anti-white hate crimes committed by non-whites, nor do they form in expectation of future hate crimes by non-whites.", "author": ["Mulholland, Sean E."], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:dedup_wf_001::00a78dcb7d7a4fadc9b48529fe15577d"}], "id": "50|dli_resolver::a3c723560be9a9f5f96277e4c2c28307", "relatedPublications": 0, "date": [""], "title": ["Hate Source: White Supremacist Hate Groups and Hate Crime"], "relatedDatasets": 2, "subject": [{"scheme": "keyword", "value": "J15 - Economics of Minorities, Races, Indigenous Peoples, and Immigrants ; Non-labor Discrimination"}, {"scheme": "keyword", "value": "D71 - Social Choice ; Clubs ; Committees ; Associations"}, {"scheme": "keyword", "value": "jel:D71"}, {"scheme": "keyword", "value": "jel:J15"}, {"scheme": "keyword", "value": "jel:K14"}, {"scheme": "keyword", "value": "K14 - Criminal Law"}, {"scheme": "keyword", "value": "hate crime, hate groups, white supremacist"}]}
78
{"typology": "publication", "publisher": ["Development (Cambridge, England)"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::fca15aa213b2e62a11e9ab8a86995934", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9310327&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::cbaae4d2f28b7452084c70af28ed4d2c", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9310327&result=coding_release", "schema": "url"}}], "abstract": "None: Only a few genes have been identified that participate in the developmental pathways which modulate homeotic (HOX) protein specificity or mediate HOX morphogenetic function. To identify more HOX pathway genes, we screened for mutations on loci on the Drosophila second chromosome that interact with the homeotic gene Deformed (Dfd). Genetic and molecular tests on the eight genes isolated in the screen place them in three general categories. Two genes appear to encode trithorax group functions, i.e. they are general activators of Hox gene expression or function. Four genes encode abundant, widely expressed proteins that may be required to mediate Dfd morphogenetic functions in certain tissues, including two genes for collagen IV protein variants. Finally, two of the genes are required for the development of a subset of embryonic Dfd-dependent structures, while leaving many other segmental structures intact. We cloned and characterized one of these two, which we have named apontic (apt). apt is required for the elaboration of dorsal and ventral head structures. It encodes a 484-amino-acid protein with no significant similarity to known protein sequences. The apt transcript pattern is normal in Dfd and Scr mutants, and the Dfd and Scr transcript patterns are normal in apt mutants. We propose that apt acts in parallel to, or as a cofactor with, HOX proteins to regulate homeotic targets in the ventral gnathal region.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9310327"}], "author": ["McGinnis N", "Harding K W", "Martin M M", "McGinnis W", "Gellon G"], "relatedPublications": 0, "id": "50|r3d100010527::f123179a899da6b7b206b9d274c68945", "title": ["A genetic screen for modifiers of Deformed homeotic function identifies novel genes required for head development."], "relatedDatasets": 2}
79
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::17d8a895ea0d1a149359789c8f281a3b", "id": {"identifier": "10.5517/ccq6wb3", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8d78e20bb10a497fbd7b5061269f0bf9", "id": {"identifier": "10.5517/ccq6wc4", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "To explore the photophysics of platinum acetylide chromophores with strong two-photon absorption cross-sections, we have investigated the synthesis and spectroscopic characterization of a series of platinum acetylide complexes that feature highly π-conjugated ligands substituted with π-donor or -acceptor moieties. The molecules (numbered 1-4) considered in the present work are analogs of bis(phenylethynyl)bis(tributylphosphine)platinum(II) complexes. Molecule 1 carries two alkynyl-benzothiazolylfluorene ligands, and molecule 2 has two alkynyl-diphenylaminofluorene ligands bound to the central platinum atom. Compounds 3 and 4 possess two dihexylaminophenyl substituents at their ends and differ by the number of platinum atoms in the oligomer \"core\" (one vs two in 3 and 4, respectively). The ligands have strong effective two-photon absorption cross-sections, while the heavy metal platinum centers give rise to efficient intersystem crossing to long-lived triplet states. Ultrafast transient absorption and emission spectra demonstrate that one-photon excitation of the chromophores produces an S 1  state delocalized across the two conjugated ligands, with weak (excitonic) coupling through the platinum centers. Intersystem crossing occurs rapidly (K isc  ≈10 11  s -1 ) to produce the T 1  state, which is possibly localized on a single conjugated fluorenyl ligand. The triplet state is strongly absorbing (∈ TT  > 5 x 10 4  M -1  cm -1 ), and it is very long-lived (τ > 100 μs). Femtosecond pulses were used to characterize the two-photon absorption properties of the complexes, and all of the chromophores are relatively efficient two-photon absorbers in the visible and near-infrared region of the spectrum (600-800 nm). The complexes exhibit maximum two-photon absorption at a shorter wavelength than 2λ for the one-photon band, consistent with the dominant two-photon transition arising from a two-photon-allowed gerade-gerade transition. Nanosecond transient absorption experiments carried out on several of the complexes with excitation at 803 nm confirm that the long-lived triplet state can be produced efficiently via a sequence involving two-photon excitation to produce S 1 , followed by intersystem crossing to the T 1 .", "author": ["Cooper Thomas M.", "Schanze Kirk S.", "Fleitz Paul A.", "McLean Daniel G.", "Makarov Nikolay S.", "Rogers Joy E.", "Fratini Albert", "Farley Richard", "Drobizhev Mikhail", "Rebane Aleksander", "Slagle Jonathan E.", "Kim Kye-Young", "Hall Benjamin C.", "Krein Douglas M.", "Burke Aaron R."], "localIdentifier": [{"type": "doi", "id": "10.1021/ic700549n"}], "id": "50|dli_resolver::771ddccce90cf48ddd07a39584b09b57", "relatedPublications": 0, "date": [""], "title": ["\"Platinum Acetylide Two-Photon Chromophores\""], "relatedDatasets": 2}
80
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::44e9478985b019c4ad46b8f102de409f", "id": {"identifier": "10.5517/ccywxqf", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::34033b895404ff9760c90fea6d79c9df", "id": {"identifier": "10.5517/ccywxtj", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d97c85310cee0ec497d6f7f880e5f017", "id": {"identifier": "10.5517/ccywxk8", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2f4bd6db5ac09a5f60b112ab7ea46143", "id": {"identifier": "10.5517/ccywxxm", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5e70ac903615c7ff71a7770877f4d806", "id": {"identifier": "10.5517/ccywxl9", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::06af5ceb54e1d3cb1f5e38b206723bb7", "id": {"identifier": "10.5517/ccywxzp", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0a1a9cd4725e65b20c714000a854035e", "id": {"identifier": "10.5517/ccywxj7", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c1de965a95ecc18af0aa32ec3f20d0a5", "id": {"identifier": "10.5517/ccywxnc", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::30f37842e00669fc40c7972884740b21", "id": {"identifier": "10.5517/ccywxrg", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::afc0df09c2c3246546e7f48a1a96399f", "id": {"identifier": "10.5517/ccywxwl", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::7f52fb39f7cfb75fea4b8bdc3a80c3a2", "id": {"identifier": "10.5517/ccywxpd", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::875d7c0bf98043fb8a1d0419f535edc9", "id": {"identifier": "10.5517/ccywxsh", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::66672804dafc8916657ef9c8ca6776c4", "id": {"identifier": "10.5517/ccywxmb", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::fe227232f04def38b0ff0409dfb36f9b", "id": {"identifier": "10.5517/ccywxyn", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1ba3e160f94bb6e416a7b61dfcf93727", "id": {"identifier": "10.5517/ccywxvk", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The synthesis and structures of fifteen new cobalt complexes containing phosphonate ligands are reported. The compounds also utilize carboxylates and 6-chloro-2-pyridonate (chp) as co-ligands. The majority of the compounds are decametallic: [Co10(chp)12(O3PPh)2(O2CPh)4(H2O)4], [Co10(chp)12(O3PPh)2(O2CtBu)4(H2O)4], [Co10(chp)12(O3PPh)2(O2CPhtBu)4(H2O)4], [Co10(chp)6(O3PCH2Ph)2(O2CPh)8(F)2 (H2O)2(EtOAc)2], [Co10(chp)8(O3PCH2Ph)2(O2CPh)8(F)2(MeCN)2](HNEt3)2, [Co10(chp)6(O3PCH2Ph)2(O2CtBu)8(F)2(H2O)2(MeCOMe)2], [Co10(chp)6(O3PMe)2 (O2CtBu)8(F)2(MeCN)4], [Co10(chp)6(O3PEt)2(O2CPh)8(F)2(MeCN)4], [Co10(chp)6(O3POct)2(O2CPh)8(F)2(MeCN)4], [Co10(chp)8(Hchp)2(O3PCH2Nap) (O2CPh)7(OH)3(H2O)], [Co10(chp)12(O3PPh)2(O2CPh-2-Ph)4(H2O)4] and [Co10(chp)12(O3PMe)2(O2CPh-2-Ph)4(H2O)4]. Two nine-metal cages and one hexametallic cage are also reported: [Co9(chp)9(O3PtBu)(O2CtBu)6(OH)], [Co9(chp)7(O3PCH2Ph)2(O3PCH2Ph)(O2CCPh3)5(OH)(H2O)2(MeCN)] and [Co6(chp)6(Hchp)2(O3PtBu)(O2CPh-2-Ph)3(F)(H2O)](HNEt3)(Cl). Magnetic studies show predominantly anti-ferromagnetic exchange interactions between the cobalt(II) sites, with diamagnetic ground states for most of the compounds studied.", "author": ["Winpenny Richard E. P.", "Teat Simon J.", "Langley Stuart K.", "Helliwell Madeleine"], "localIdentifier": [{"type": "doi", "id": "10.1039/c2dt31612a"}], "id": "50|dli_resolver::cf0edf002d758ddf5e28d85cf7d06eb7", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis and characterisation of cobalt(ii) phosphonate cage complexes utilizing carboxylates and pyridonates as co-ligands\""], "relatedDatasets": 15}
81
{"typology": "publication", "publisher": ["BMJ"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ae1752047cf5ac30a7707663ab98e3ad", "id": {"identifier": "10.5061/dryad.52mt5", "schema": "doi"}}, {"relationSemantic": "references", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ae1752047cf5ac30a7707663ab98e3ad", "id": {"identifier": "10.5061/dryad.52mt5", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Objective To assess the effectiveness of dietary counselling and complementary food supplements on anaemia and stunting prevalence in children aged 6–23 months.#N##N#Design A controlled intervention study with measurements of height and haemoglobin levels, and cross-sectional surveys in August 2012 (baseline), 2013 (mid-term) and 2014 (end-line).#N##N#Setting One intervention county and one control county in rural Qinghai Province, China.#N##N#Intervention Complementary food supplements (containing protein, fat, carbohydrate, vitamin A, B1, B2, B12, D3, folic acid, iron, zinc and calcium) and complementary feeding counselling were given in the intervention county.#N##N#Participants Caregivers and their children aged 6–23 months.#N##N#Primary and secondary outcome measures Effect of the interventions on the prevalence of anaemia (haemoglobin <110 g/L) and stunting (z-score of height-for-age <−2.0) (controlled for differences between the counties), and on infant feeding practices.#N##N#Results The surveys were conducted on 1804, 2187 and 2186 children aged 6–23 months in the intervention county in August 2012, 2013 and 2014, respectively, and 804, 680 and 790 children in the control county, respectively. Between the baseline and end-line surveys, anaemia prevalence decreased more in the intervention county than in the control county (71.1% to 47.8% vs 86.3% to 75.3%, respectively; p<0.0001). There was no difference in the decrease in stunting prevalence between the counties (9.7% to 7.1% vs 17.0% to 15.0%; p=0.7954). The proportions of children given iron-rich or iron-fortified food, introduced to (semi-) solid food at 6–8 months, and given food with minimum dietary diversity increased from 43.2% to 88.8% (p<0.0001), 81.4% to 96% (p=0.0470) and 53.0% to 59.8% (p<0.0001), respectively in the intervention county.#N##N#Conclusions We found much higher anaemia prevalence in poor rural areas of Qinghai Province compared with the national data. Community-based complementary food supplements combined with dietary counselling can improve feeding practices and reduce anaemia prevalence. Future studies should use longer follow-up to assess the effects on stunting.#N##N#Strengths and limitations We included a large number of participants and assessed a combined complementary food supplements and dietary counselling intervention in a poor rural area in China with high anaemia prevalence. Although the study took place in only one intervention county and one control county, we conducted an analysis that controlled for differences between the two counties. Also, although we made significant efforts to train village doctors, their education was not systematically assessed after training and thus their delivery of the interventions may have been variable.#N##N#Trial registration number [ChiCTRPRC12002444][1]; Pre-results.#N##N# [1]: http://www.chictr.org.cn/showproj.aspx?proj=7106", "author": ["Zhang Yanfeng", "Chen Li", "Chang Suying", "Xing Min", "Scherpbier Robert W.", "Wang Wei", "van Velthoven Michelle Helena", "Wu Qiong", "Han Huijun"], "localIdentifier": [{"type": "doi", "id": "10.1136/bmjopen-2016-011234"}], "id": "50|dli_resolver::59e44bcbe575ddd3739d6accc022abb2", "relatedPublications": 0, "date": [""], "title": ["\"Effectiveness of complementary food supplements and dietary counselling on anaemia and stunting in children aged 6–23 months in poor areas of Qinghai Province, China: a controlled interventional study\""], "relatedDatasets": 2}
82
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::5fcd0400c3437f6678ddefa56ce84b77", "id": {"identifier": "10.6084/m9.figshare.c.3635174.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::e936d89179f6d00fdce4fa5fd892fa80", "id": {"identifier": "10.6084/m9.figshare.c.3635174_d1.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::dee1fda47f5a0bff07683802f90d0f77", "id": {"identifier": "10.6084/m9.figshare.c.3635174_d1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::02e7445a489907b9502f90169e6a31fb", "id": {"identifier": "10.6084/m9.figshare.c.3635174", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Increasing evidence suggests that the immune system has a beneficial role in the progression of amyotrophic lateral sclerosis (ALS) although the mechanism remains unclear. Recently, we demonstrated that motor neurons (MNs) of C57SOD1G93A mice with slow disease progression activate molecules classically involved in the cross-talk with the immune system. This happens a lot less in 129SvSOD1G93A mice which, while expressing the same amount of transgene, had faster disease progression and earlier axonal damage. The present study investigated whether and how the immune response is involved in the preservation of motor axons in the mouse model of familial ALS with a more benign disease course. First, the extent of axonal damage, Schwann cell proliferation, and neuromuscular junction (NMJ) denervation were compared between the two ALS mouse models at the disease onset. Then, we compared the expression levels of different immune molecules, the morphology of myelin sheaths, and the presence of blood-derived immune cell infiltrates in the sciatic nerve of the two SOD1G93A mouse strains using immunohistochemical, immunoblot, quantitative reverse transcription PCR, and rotating-polarization Coherent Anti-Stokes Raman Scattering techniques. Muscle denervation, axonal dysregulation, and myelin disruption together with reduced Schwann cell proliferation are prominent in 129SvSOD1G93A compared to C57SOD1G93A mice at the disease onset, and this correlates with a faster disease progression in the first strain. On the contrary, a striking increase of immune molecules such as CCL2, MHCI, and C3 was seen in sciatic nerves of slow progressor C57SOD1G93A mice and this was accompanied by heavy infiltration of CD8+ T lymphocytes and macrophages. These phenomena were not detectable in the peripheral nervous system of fast-progressing mice. These data show for the first time that damaged MNs in SOD1-related ALS actively recruit immune cells in the peripheral nervous system to delay muscle denervation and prolong the lifespan. On the contrary, the lack of this response has a negative impact on the disease course.", "author": ["Heath Paul R.", "Trolese Maria Chiara", "Shaw Pamela J.", "Bendotti Caterina", "Riva Nilo", "de Vito Giuseppe", "Dina Giorgia", "Piazza Vincenzo", "Cecchi Roberta", "Quattrini Angelo", "Nardo Giovanni"], "localIdentifier": [{"type": "doi", "id": "10.1186/s12974-016-0732-2"}], "id": "50|dli_resolver::d76983824e2adc63a8718a0f200aea64", "relatedPublications": 0, "date": [""], "title": ["\"Immune response in peripheral axons delays disease progression in SOD1G93A mice\""], "relatedDatasets": 4}
83
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::764007c8b4b803063077555ffeadef35", "id": {"identifier": "z50172", "schema": "ena"}}], "abstract": "", "author": ["Schouls, Leo M.", "Bergmans, Anneke M. C.", "Winfried Kern", "Dirk Wagner", "Buiting, Anton G. M.", "Annerose Serr", "Margreet Vos"], "localIdentifier": [{"type": "pmid", "id": "16710989"}], "id": "50|pubmed______::d68b820549641c51d030828118c38dcc", "relatedPublications": 0, "date": ["2006-03-01"], "title": ["\"Mycobacterium tilburgii\" infections."], "relatedDatasets": 1}
84
{"typology": "publication", "publisher": ["FEMS microbiology letters"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::64f7446797da949ecb7e39c7a38510d6", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9453160&result=sequence_release", "schema": "url"}}], "abstract": "None: The insertion sequence ISRm8 was identified by sequence analysis of the cryptic plasmid pRmeGR4b of Sinorhizobium meliloti GR4. ISRm8 is 1451 bp in length and carries 22/24-bp terminal imperfect inverted repeats with seven mismatches and a direct target site duplication of 3 bp. ISRm8 carries a unique open reading frame whose putative protein showed significant similarity to the insertion sequences IS1357 and IS1452, isolated from Methylobacterium sp. and Acetobacter pasteurianus, respectively. Two copies of this IS element were found in strain GR4; one of them is linked to plasmid pRmeGR4b, whereas the other is localized out of the non-pSym plasmids. In S. meliloti field populations ISRm8 shows a limited distribution (50% of the strains tested carry the IS element), with a copy number ranging from 1 to 6.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9453160"}], "author": ["Zekri S", "Toro N"], "relatedPublications": 0, "id": "50|r3d100010527::16504809e76327bc274058530ef0f4cd", "title": ["A new insertion sequence from Sinorhizobium meliloti with homology to IS1357 from Methylobacterium sp. and IS1452 from Acetobacter pasteurianus."], "relatedDatasets": 1}
85
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::480c9e0b50f2954bdbd8263231ebfdbe", "id": {"identifier": "10.5517/cc12xrsj", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f415cb8cd13a9a30fb983522677303f8", "id": {"identifier": "10.5517/cc12xrqg", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::18b2b103b4edcabf6af0431eda3363da", "id": {"identifier": "10.5517/cc12xrrh", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Three silver coordination polymers, [Ag 2 (L)](NO 3 ) 2 (H 2 O) 2  ( 1 ), [Ag(L)](PF 6 ) ( 2 ), and [Ag 2 I 2 L](CH 2 Cl 2 ) ( 3 ), were prepared from AgX (X = NO 3  − , PF 6  − , I − ) and a tetrakis(pyridine)-type linking ligand (L = 1,1,2,2-tetrakis(4-(pyridin-3-yl)phenyl)ethane). Polymers  1  and  2  are homoleptic coordination polymers, whereas polymer  3  is a mixed polymer. Polymer  3  exhibits a rather reversible desorption–resorption behavior of the guest CH 2 Cl 2  molecules. Solid-state photoluminescence spectra of all polymers appear to display ligand-based fluorescence. Compared with the free ligand, polymer  1  exhibits a red shift, whereas polymers  2  and  3  exhibit a blue shift. The final structures and emission properties of the polymers may be attributed to the distinct coordination modes of the ligand and the anion in the starting silver compound.", "author": ["Lee Gang Min", "Lee Soon W."], "localIdentifier": [{"type": "doi", "id": "10.1016/j.poly.2014.11.024"}], "id": "50|dli_resolver::c12b990aaddddd37f84b0f37aeebd69a", "relatedPublications": 0, "date": [""], "title": ["\"Silver-tetrapyridyl coordination polymers: Ag2(L)(NO3)2(H2O)2, Ag(L)(PF6), and Ag2I2L(CH2Cl2) {L=1,1,2,2-tetrakis(4-(pyridin-3-yl)phenyl)ethene}\""], "relatedDatasets": 3}
86
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::75b5b3cc931de972c849e7b8431e0e60", "id": {"identifier": "4uv8", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::18d25b6feef41b698da9f707b2692f1e", "id": {"identifier": "4uv9", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::dcbb7101083550942b65a9b1cdce6178", "id": {"identifier": "4uva", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::8aeea28426cb329d217e1e0a242c3862", "id": {"identifier": "4uvc", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::1b4ce2a71b4f08b9ddd27a1859277a3c", "id": {"identifier": "4uvb", "schema": "pdb"}}], "abstract": "", "author": ["Botrugno Oronza A.", "Tortorici Marcello", "Varasi Mario", "Mai Antonello", "Thaler Florian", "Trifiró Paolo", "Meroni Giuseppe", "Cappa Anna", "Dessanti Paola", "Vianello Paola", "Mercurio Ciro", "Ciossani Giuseppe", "Mattevi Andrea", "Valente Sergio", "Villa Manuela", "Minucci Saverio"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ejmech.2014.08.068"}], "id": "50|dedup_wf_001::5d5978c043374b711c560f920e995370", "relatedPublications": 0, "date": [""], "title": ["Synthesis, biological activity and mechanistic insights of 1-substituted cyclopropylamine derivatives: A novel class of irreversible inhibitors of histone demethylase KDM1A"], "relatedDatasets": 10}
87
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0ea9ed430dd0829fb70202d68de921d5", "id": {"identifier": "10.3886/icpsr06453.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Alvarez, R. Michael", "Bowler, Shaun", "Nagler, Jonathan"], "localIdentifier": [{"type": "icpsr", "id": "1650"}], "relatedPublications": 0, "title": ["Issues, Economics, and the Dynamics of Multiparty Elections: The British 1987 General Election"], "id": "50|r3d100010255::462b142ea1c15d59362926976340fc48"}
88
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1e105e4f94d9e3dfe260732254999189", "id": {"identifier": "10.5517/ccxnzj1", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "A total synthesis of both diastereomers of the originally proposed structure for streptophenazine A (1) has been achieved. However, both synthetic compounds are different from the natural product. Re-examination of NMR data reported for streptophenazine A and a concise total synthesis of both diastereomers of 17 (17a and 17b) led to the structural revision of streptophenazine A to 17b. Asymmetric synthesis of (−)-streptophenazine A was also conducted, and its absolute configuration was determined to be 1′S,2′R.", "author": ["Guaciaro Michael", "Mocek Ursula", "Yang Zhicai", "Morley Tim", "Molino Bruce F.", "Reategui Ricardo", "Jin Xiaomin", "Rhea Joshua"], "localIdentifier": [{"type": "doi", "id": "10.1021/ol202005u"}], "id": "50|dli_resolver::f9874d4f73fa0f94f6a1534bc0b2bc2b", "relatedPublications": 0, "date": [""], "title": ["\"The Revised Structure, Total Synthesis, and Absolute Configuration of Streptophenazine A\""], "relatedDatasets": 1}
89
{"typology": "publication", "publisher": ["Molecular biology of the cell"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::6effe6d41770ea0bd101b62b8b6c9e14", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9398674&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::64878396a327ea9edbd299828932b5cd", "id": {"identifier": "m76585", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::f2dbc8da0003250c2cd22325b36a4030", "id": {"identifier": "l01038", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f5eefbc74ae36b0d0b1b76360f25e4c1", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9398674&result=coding_release", "schema": "url"}}], "abstract": "None: Mitogen-activated protein (MAP) kinases are pivotal components of eukaryotic signaling cascades. Phosphorylation of tyrosine and threonine residues activates MAP kinases, but either dual-specificity or monospecificity phosphatases can inactivate them. The Candida albicans CPP1 gene, a structural member of the VH1 family of dual- specificity phosphatases, was previously cloned by its ability to block the pheromone response MAP kinase cascade in Saccharomyces cerevisiae. Cpp1p inactivated mammalian MAP kinases in vitro and acted as a tyrosine-specific enzyme. In C. albicans a MAP kinase cascade can trigger the transition from the budding yeast form to a more invasive filamentous form. Disruption of the CPP1 gene in C. albicans derepressed the yeast to hyphal transition at ambient temperatures, on solid surfaces. A hyphal growth rate defect under physiological conditions in vitro was also observed and could explain a reduction in virulence associated with reduced fungal burden in the kidneys seen in a systemic mouse model. A hyper-hyphal pathway may thus have some detrimental effects on C. albicans cells. Disruption of the MAP kinase homologue CEK1 suppressed the morphological effects of the CPP1 disruption in C. albicans. The results presented here demonstrate the biological importance of a tyrosine phosphatase in cell-fate decisions and virulence in C. albicans.", "author": ["Röllinghoff, M.", "Meloche S", "Dignard, D.", "Dignard D", "Schröppel, K.", "Makris C", "Röllinghoff M", "Whiteway, M.", "Whiteway M", "Csank, C.", "Dy, Thomas", "Csank C", "Makris, C.", "Schröppel K", "Thomas D Y", "Meloche, S."], "localIdentifier": [{"type": "pbmid", "id": "9398674"}, {"type": "pmid", "id": "9398674"}], "id": "50|dedup_wf_001::b82eb64683abb181759fabdb18e38917", "relatedPublications": 0, "date": ["1997-12-01"], "title": ["Derepressed hyphal growth and reduced virulence in a VH1 family-related protein phosphatase mutant of the human pathogen Candida albicans."], "relatedDatasets": 4}
90
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::51f789d286605efa502826e1e4ce3094", "id": {"identifier": "10.5517/cct4w3x", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::add4a00687a12040eb8249b9b2445bc8", "id": {"identifier": "10.5517/cct4w4y", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "abstract The synthesis and anticonvulsant properties of new N-Mannich bases of [7,8-f]benzo-2-aza-spiro[4.5]decane-1,3-diones (5a–h) and [7,8-f]benzo-1,3-diaza-spiro[4.5]decane-2,4-diones (7a–h) weredescribed. Initial anticonvulsant screening was performed using intraperitoneal (ip) maximal electro-shock (MES) and subcutaneous pentylenetetrazole (scPTZ) seizures tests. The neurotoxicity was deter-mined applying the rotarod test. The majority of compounds were effective in the MES or/and scPTZscreen. The quantitative studies showed that several molecules were more potent than phenytoin, usedas reference drug. Selected derivatives were screened in the 6-Hz test and also assessed for potentialactivity against nerve agents using the Pilocarpine Induced Status Prevention model. To explain the pos-sible mechanism of anticonvulsant action, for chosen active derivatives, theirinfluence on voltage-depen-dent Na + channel were tested in vitro. 2010 Elsevier Ltd. All rights reserved. 1. IntroductionThe past decades have demonstrated many attempts to identifythe structural features of compounds crucial for anticonvulsantactivity. It’s well documented that one of the important corefragments of anticonvulsants is defined by nitrogen heteroatomicsystem, usually a cyclic imide, at least of one carbonyl group andphenyl or alkyl groups attached to the heterocyclic system.", "author": ["Szczesio Małgorzata", "Obniska Jolanta", "Pawłowski Maciej", "Kamiński Krzysztof", "Byrtus Hanna", "Karolak-Wojciechowska Janina"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.bmc.2010.06.064"}], "id": "50|dli_resolver::55c42d627a0130dcf15d05829dcec3ff", "relatedPublications": 0, "date": [""], "title": ["\"Design, synthesis, and anticonvulsant activity of new N-Mannich bases derived from spirosuccinimides and spirohydantoins\""], "relatedDatasets": 2}
91
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5599fbd70b8f8828bcb7bdedeb627b35", "id": {"identifier": "10.17882/42182", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Faure Vincent", "Kawai Yoshimi"], "localIdentifier": [{"type": "doi", "id": "10.1007/s10872-015-0318-0"}], "id": "50|dli_resolver::c9aab2317bfb93e136f7021d8b689c1a", "relatedPublications": 0, "date": [""], "title": ["Heat and salt budgets of the mixed layer around the Subarctic Front of the North Pacific Ocean"], "relatedDatasets": 1}
92
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5fed73c961e9c8145861ca1d47f91bca", "id": {"identifier": "10.5517/cczgcqh", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9204b86c12f60b9182ce386156bcbfb3", "id": {"identifier": "10.5517/cczgctl", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5f91bfa3bcd3a5d10217507bd5905110", "id": {"identifier": "10.5517/cczgcpg", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c1f564a0577f7f8bd23edb1f1c6d11b5", "id": {"identifier": "10.5517/cczgcsk", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::82b92f35dcc777baa112704d1be40738", "id": {"identifier": "10.5517/cczgcrj", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Five novel compounds {[Cu(CMA)]·0.8H2O}n (1), {[Cu(CMA)(bpy)0.5]·0.5DMF}n (2), {[Cu(CMA)(bpy)(H2O)]·0.5H2O}n (3), {[Cu2(CMA)(DPA)(bpy)2(H2O)]ClO4}n (4) and {[Cu3(CMA)(DPA)(bpy)4(OH)](ClO4)2·3H2O)}n (5) (H2CMA = 3-(carboxymethoxy)-5-methylbenzoic acid, HDPA = 2-(3,5-dimethylphenoxy)acetic acid, bpy = 4,4′-bipyridine) were synthesized and characterized by single crystal X-ray diffraction. Interestingly, the kinds of ligands included in these compounds are different: 1 contains single-ligand CMA2−; 2 and 3 comprise two kinds of ligands (CMA2− and bpy); 4 and 5 cover three kinds of ligands (CMA2−, DPA− and bpy). Structural analyses reveal that 1–3, and 5 are three-dimensional (3D) frameworks, while 4 is a 2D layer. Noteworthily, 1 possesses two types of channels: six-star and hexagonal ones. 3 displays a three-fold interpenetrating 3D framework. The structural diversity of the compounds may have originated from different anions, solvents and temperatures. Variable-temperature magnetic susceptibility measurements were carried out on compounds 1, 2 and 4, and the magnetic properties are dramatically different due to the structural diversities. The magnetic data of 1 shows an antiferromagnetic interaction with J = −54.84 cm−1 estimated from the Bonner–Fisher model. The magnetic data of 2 was least-square fitted to the Blenaey–Bowers equation with J = −131.01 cm−1, indicating the existence of a strong antiferromagnetic interaction between two adjacent Cu2+. The magnetic data of linear tetranuclear structure 4 was best fitted to the expression derived from the Hamiltonian H = −2(2J1S1S2 + J2S1S1*). The best fitting parameters are J1 = −17.48 cm−1 and J2 = −65.26 cm−1, which also indicate an antiferromagnetic interaction. Simultaneously, the magneto-structural relationship was discussed.", "author": ["Shi Peng-Fei", "Zhao Bin", "Shen Bo", "Wan Fan-Fan", "Hou Yin-Ling", "Gao Dong-Liang"], "localIdentifier": [{"type": "doi", "id": "10.1039/c2dt32515b"}], "id": "50|dli_resolver::d99da6b1723df126466834ccd7dcc9f7", "relatedPublications": 0, "date": [""], "title": ["\"Structural diversity and magnetic properties of five copper–organic frameworks containing one-, two-, and three-types of organic ligands\""], "relatedDatasets": 5}
93
{"typology": "publication", "publisher": ["Acta tropica"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::cef534109c1dbd4cbee4e2be40fe04f6", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1359760&result=sequence_release", "schema": "url"}}], "abstract": "None: We have sequenced single kinetoplast DNA minicircles from three species and part of a minicircle from the fourth major species within the Leishmania braziliensis complex. Alignment of these sequences with each other and with those of other kinetoplastids allowed the selection of a pair of oligonucleotides suitable as primers in a polymerase chain reaction which is highly specific for the Leishmania braziliensis complex. The reaction is capable of detecting less than one femtogramme of kinetoplast DNA. It has been tested with crude specimens from South American leishmaniasis patients, potential wild animal reservoirs and sandfly vectors. The tests indicate that these primers are suitable for diagnosis of leishmaniasis and potentially useful in epidemiological surveys.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "1359760"}], "author": ["Barker D C", "de Bruijn M H"], "relatedPublications": 0, "id": "50|r3d100010527::499d89f9bf45ed84b49cb1fae678e118", "title": ["Diagnosis of New World leishmaniasis: specific detection of species of the Leishmania braziliensis complex by amplification of kinetoplast DNA."], "relatedDatasets": 1}
94
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::cf692754feadf553aa30cc6898974db7", "id": {"identifier": "2vda", "schema": "pdb"}}], "abstract": "SUMMARY Recognition of signal sequences by cognate receptors controls the entry of virtually all proteins to export pathways. Despite its importance, this process remains poorly understood. Here, we present the solution structure of a signal peptide bound to SecA, the 204 kDa ATPase motor of the Sec translocase. Upon encounter, the signal peptide forms an a-helix that inserts into a flexible and elongated groove in SecA. The mode of binding is bimodal, with both hydrophobic and electrostatic interactions mediating recognition. The same groove is used by SecA to recognize a diverse set of signal sequences. Impairment of the signal-peptide binding to SecA results in significant translocation defects. The C-terminal tail of SecA occludes the groove and inhibits signal-peptide binding, but autoinhibition is relieved by the SecB chaperone. Finally, it is shown that SecA interconverts between two conformations in solution, suggesting a simple mechanism for polypeptide translocation.", "author": ["Keramisanou Dimitra", "Karamanou Spyridoula", "Economou Anastassios", "Bonvin Alexandre M.J.J.", "Kalodimos Charalampos G.", "Koukaki Marina", "Gelis Ioannis", "Gouridis Giorgos"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.cell.2007.09.039"}], "id": "50|dli_resolver::17e3a6fd6dd139fc1bcfbd08efdda51a", "relatedPublications": 0, "date": [""], "title": ["\"Structural Basis for Signal-Sequence Recognition by the Translocase Motor SecA as Determined by NMR\""], "relatedDatasets": 1}
95
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::0f0c7c67fea550519b11b68809dcba7a", "id": {"identifier": "10.6084/m9.figshare.c.3884041_d1.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::18132f1e17c1271d6e6e2ff720922301", "id": {"identifier": "10.6084/m9.figshare.c.3884041_d3.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2ac75335ad7b75c5f9449355ed2b927a", "id": {"identifier": "10.6084/m9.figshare.c.3884041_d2", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::905401ce942a7a70518163ea0161ab51", "id": {"identifier": "10.6084/m9.figshare.c.3884041", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::47e58d6089aad92154f5bae6f572ce2f", "id": {"identifier": "10.6084/m9.figshare.c.3884041_d2.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::fcf5949e65b07f30c27803dd08abdae6", "id": {"identifier": "10.6084/m9.figshare.c.3884041.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b99920324634a1d9c4215fe67d4a4466", "id": {"identifier": "10.6084/m9.figshare.c.3884041_d1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f679e0483c95b4453f12519c6a5a695f", "id": {"identifier": "10.6084/m9.figshare.c.3884041_d3", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Wilks Angela", "Huang Weiliang"], "localIdentifier": [{"type": "doi", "id": "10.1186/s12866-017-1112-5"}], "id": "50|dli_resolver::d5a3d8ee4ea1ac0e6a69915f59a6af7b", "relatedPublications": 0, "date": [""], "title": ["\"A rapid seamless method for gene knockout in Pseudomonas aeruginosa\\n        \""], "relatedDatasets": 8}
96
{"typology": "publication", "publisher": ["Molecular and cellular endocrinology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::0b7bd58bd43bdb2179e46e411700940d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1338725&result=taxon", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::ec91db133a86b1b6db6d9d897324a826", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1338725&result=sample", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::d9ce75f9522c48e62f889dfc74307a33", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1338725&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::cec6564f11371cabec50c378892d479a", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1338725&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3f555ca3f24c909ca12daeb6e69cda53", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1338725&result=coding_release", "schema": "url"}}], "abstract": "None: We have isolated a bovine prolactin (bPRL) receptor cDNA from an endometrial cDNA library, which predicts a 557 amino acid transmembrane protein similar to the long forms of other characterized prolactin receptors. The predicted cytoplasmic domain is slightly truncated primarily by a stop codon located 36 codons 5' from the stop utilized in the human hepatic transcript. When expressed in COS cells, this cDNA was shown to encode a protein which bound bovine placental lactogen (bPL) and bPRL with nearly equal affinity (KD for bPL, 2.03 x 10(-10) M; bPRL, 3.07 x 10(-10) M). Northern analysis demonstrated multiple transcripts, with maternal liver, corpus luteum, intestine, endometrium and fetal liver containing a major transcript of about 3.8 kb, and maternal corpus luteum and endometrium, a second sized transcript of apparently equal abundance of 4.4 kb. This difference did not appear to be within the coding region. Primer extension analysis of maternal hepatic and endometrial transcripts revealed considerable heterogeneity. Examination of the distribution of prolactin and growth hormone receptor transcripts at mid-pregnancy by semi-quantitative reverse transcriptase polymerase chain reaction showed that both are widespread in bovine fetal and placental tissues. This isolation of bovine prolactin receptor cDNA, and description of receptor distribution will facilitate study of the action of the placental and pituitary members of this gene family during pregnancy.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "1338725"}], "author": ["Kessler M A", "Scott P", "Schuler L A"], "relatedPublications": 0, "id": "50|r3d100010527::de70d52a77edabd527ecbf40ed706dae", "title": ["Molecular cloning of the bovine prolactin receptor and distribution of prolactin and growth hormone receptor transcripts in fetal and utero-placental tissues."], "relatedDatasets": 5}
97
{"typology": "publication", "publisher": ["PeerJ"], "doiRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::2bab542db8598e5b23af4a389ceb1d23", "id": {"identifier": "10.7287/peerj.239v0.1/reviews/2", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::86ccc9e4b30c297981fa13aec9786d2b", "id": {"identifier": "10.7287/peerj.239v0.1/reviews/1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "State of the art high-throughput technologies allow comprehensive experimental studies of organism metabolism and induce the need for a convenient presentation of large heterogeneous datasets. Especially, the combined analysis and visualization of data from different high-throughput technologies remains a key challenge in bioinformatics. We present here the MarVis-Graph software for integrative analysis of metabolic and transcriptomic data. All experimental data is investigated in terms of the full metabolic network obtained from a reference database. The reactions of the network are scored based on the associated data, and sub-networks, according to connected high-scoring reactions, are identified. Finally, MarVis-Graph scores the detected sub-networks, evaluates them by means of a random permutation test and presents them as a ranked list. Furthermore, MarVis-Graph features an interactive network visualization that provides researchers with a convenient view on the results. The key advantage of MarVis-Graph is the analysis of reactions detached from their pathways so that it is possible to identify new pathways or to connect known pathways by previously unrelated reactions. The MarVis-Graph software is freely available for academic use and can be downloaded at: http://marvis.gobics.de/marvis-graph.", "author": ["Gatz Christiane", "Feussner Ivo", "Meinicke Peter", "Landesfeind Manuel", "Feussner Kirstin", "Thurow Corinna", "Kaever Alexander"], "localIdentifier": [{"type": "doi", "id": "10.7717/peerj.239"}], "id": "50|dli_resolver::52dbf01e98fa7d8b4f82955b4bc0ccae", "relatedPublications": 0, "date": [""], "title": ["\"Integrative study ofArabidopsis thalianametabolomic and transcriptomic data with the interactive MarVis-Graph software\""], "relatedDatasets": 2}
98
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::19999f213166d852764abbbed9882556", "id": {"identifier": "fj550089", "schema": "ncbi-n"}}], "abstract": "", "title": ["Large kelp-rafted rocks as potential dropstones in the Southern Ocean"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.margeo.2017.07.016"}], "id": "50|elsevier____::db83501b489764426c0be607301fc8cd", "relatedPublications": 0, "date": ["2017"], "relatedDatasets": 1}
99
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c789be3863e2eae02eed20dfa2905819", "id": {"identifier": "10.6084/m9.figshare.c.3803614_d1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4299b5f26ed9a0a31baeb64069e8f3be", "id": {"identifier": "10.6084/m9.figshare.c.3803614", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::47f4ebfc29aef0e126042ce837c5b30a", "id": {"identifier": "10.6084/m9.figshare.c.3803614.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::d575e680f1729169810085258162ae35", "id": {"identifier": "10.6084/m9.figshare.c.3803614_d1.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Shaw Sara", "Greenhalgh Trisha", "A’Court Christine"], "localIdentifier": [{"type": "doi", "id": "10.1186/s12872-017-0594-2"}], "id": "50|dli_resolver::1a6315695273f3327867ac1b2114778b", "relatedPublications": 0, "date": [""], "title": ["\"Understanding heart failure; explaining telehealth – a hermeneutic systematic review\""], "relatedDatasets": 4}
100
{"typology": "publication", "publisher": ["Journal of virology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::77142bd0dd8ac7845454a9239efc18c1", "id": {"identifier": "z97730", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::1a8649175cec8adb92a9bad05e0c5b49", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9343198&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::17777cda3cce45fe665c9e8b03fd30be", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9343198&result=sequence_release", "schema": "url"}}], "abstract": "None: The NS5B protein of the hepatitis C virus (HCV) is an RNA-dependent RNA polymerase (RdRp) (S.-E. Behrens, L. Tomei, and R. De Francesco, EMBO J. 15:12-22, 1996) that is assumed to be required for replication of the viral genome. To further study the biochemical and structural properties of this enzyme, an NS5B-hexahistidine fusion protein was expressed with recombinant baculoviruses in insect cells and purified to near homogeneity. The enzyme was found to have a primer-dependent RdRp activity that was able to copy a complete in vitro-transcribed HCV genome in the absence of additional viral or cellular factors. Filter binding assays and competition experiments showed that the purified enzyme binds RNA with no clear preference for HCV 3'-end sequences. Binding to homopolymeric RNAs was also examined, and the following order of specificity was observed: poly(U) > poly(G) > poly(A) > poly(C). An inverse order was found for the RdRp activity, which used poly(C) most efficiently as a template but was inactive on poly(U) and poly(G), suggesting that a high binding affinity between polymerase and template interferes with processivity. By using a mutational analysis, four amino acid sequence motifs crucial for RdRp activity were identified. While most substitutions of conserved residues within these motifs severely reduced the enzymatic activities, a single substitution in motif D which enhanced the RdRp activity by about 50% was found. Deletion studies indicate that amino acid residues at the very termini, in particular the amino terminus, are important for RdRp activity but not for RNA binding. Finally, we found a terminal transferase activity associated with the purified enzyme. However, this activity was also detected with NS5B proteins with an inactive RdRp, with an NS4B protein purified in the same way, and with wild-type baculovirus, suggesting that it is not an inherent activity of NS5B.", "author": ["Körner F", "Herian U", "Bartenschlager, R.", "Körner, F.", "Lohmann V", "Herian, U.", "Lohmann, V.", "Bartenschlager R"], "localIdentifier": [{"type": "pmid", "id": "9343198"}, {"type": "pbmid", "id": "9343198"}], "id": "50|dedup_wf_001::714157fa2d83c99e1b6df83b0c2819ae", "relatedPublications": 0, "date": ["1997-11-01"], "title": ["Biochemical properties of hepatitis C virus NS5B RNA-dependent RNA polymerase and identification of amino acid sequence motifs essential for enzymatic activity."], "relatedDatasets": 3}
101
{"typology": "publication", "publisher": ["Pleiades Publishing Ltd"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::85ad1e4cd247b56372ea2e23601527c4", "id": {"identifier": "10.5517/cc1132ks", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9204234ac8b1bb55fd074649042f63ff", "id": {"identifier": "10.5517/cc1132lt", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Crystal structures of two S-alkylated complexes generated from the reaction of iodoacetamide and iodoethanol with an air and moisture sensitive high spin Ni(II) pentacoordinate triaminodithiolate complex, 1 are determined by X-ray structure analysis. Crystals of complex 2, [NiC16H31N5O2S2]I2, are triclinic, sp. gr. \\(P\\bar 1\\), Z = 2. Crystals of complex 3, [NiC16H28N3O2S2]I2, are monoclinic, sp. gr. P21/c, Z = 4. Structures of complexes 2 and 3 are very similar: one of the S-acetamide (2) or S-ethanol (3) groups coordinates to the Ni center through the oxygen atom forming N3S2O hexacoordination; the other group remains unbound to the Ni and left dangling. Crystal packing shows that complexes 2 and 3 interact with the iodide counterions, and that only complex 2 interact with neighboring molecules; some of these close intermolecular contacts include H-bonding interactions.", "author": ["Chohan B. S."], "localIdentifier": [{"type": "doi", "id": "10.1134/s1063774513080014"}], "id": "50|dli_resolver::c6f9ba38b46a6220c4a87912f0f244ca", "relatedPublications": 0, "date": [""], "title": ["\"Alkylation of a bioinspired high spin Ni(II)N3S2 complex with bifunctional reagents\""], "relatedDatasets": 2}
102
{"typology": "publication", "publisher": ["Oxford University Press (OUP)"], "doiRels": [{"relationSemantic": "isCitedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8e6140e721bc3f57b8a407c2504730d6", "id": {"identifier": "10.5281/zenodo.830905", "schema": "doi"}}, {"relationSemantic": "isCitedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4d9251ffe4f51a699ec29ccf08fdbd59", "id": {"identifier": "10.5281/zenodo.830906", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Bowman Thomas E."], "localIdentifier": [{"type": "doi", "id": "10.2307/1547891"}], "id": "50|dli_resolver::890b19f98e46d1e10be88817b9f7fe8e", "relatedPublications": 0, "date": [""], "title": ["Stalking the Wild Crustacean: the Significance of Sessile and Stalked Eyes in Phylogeny"], "relatedDatasets": 2}
103
{"typology": "publication", "publisher": ["Animal genetics"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c2ef5266a872f9d85c214a6fb42072fa", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8161016&result=sequence_release", "schema": "url"}}], "abstract": "None: Ten (TG)n positive clones, isolated from an equine genomic library and sequenced, contained 12-19 uninterrupted TG repeats. Primers for polymerase chain reaction (PCR) were synthesized and nine of these (TG)n loci (HTG7-15) were successfully amplified and utilized in this study together with five previously reported equine microsatellite loci (HTG2-6). The PCR products were analysed by polyacrylamide gel electrophoresis followed by automated laser fluorescence detection or autoradiography. All microsatellites showed polymorphism and stable Mendelian inheritance. Differences in microsatellite variability between horse breeds were detected. A linkage analysis comprising HTG2-15, one coat colour gene and 16 genetic blood markers enabled addition of HTG2 to linkage group U2 and a new linkage group (U6) was established comprising the loci HTG7 and HTG12. Close linkage was excluded within a set of eight microsatellites. The estimated probability of exclusion in four breeds for a parentage test based on these eight loci varied between 0.96 and 0.99.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "8161016"}], "author": ["Eriksson S", "Andersson L", "Marklund S", "Sandberg K", "Ellegren H"], "relatedPublications": 0, "id": "50|r3d100010527::7454c4d3e681018ad0ebea7d56a56afe", "title": ["Parentage testing and linkage analysis in the horse using a set of highly polymorphic microsatellites."], "relatedDatasets": 1}
104
{"typology": "publication", "publisher": ["Carcinogenesis"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::128408de790a10408707299c468231e8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10383892&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::e4e54f4a3e0cb61a463f1db485021a1d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10383892&result=sequence_release", "schema": "url"}}], "abstract": "None: The aflatoxin B1 (AFB1) aldehyde metabolite of AFB1 may contribute to the cytotoxicity of this hepatocarcinogen via protein adduction. Aflatoxin B1 aldehyde reductases, specifically the NADPH-dependent aldo-keto reductases of rat (AKR7A1) and human (AKR7A2), are known to metabolize the AFB1 dihydrodiol by forming AFB1 dialcohol. Using a rat AKR7A1 cDNA, we isolated and characterized a distinct aldo-keto reductase (AKR7A3) from an adult human liver cDNA library. The deduced amino acid sequence of AKR7A3 shares 80 and 88% identity with rat AKR7A1 and human AKR7A2, respectively. Recombinant rat AKR7A1 and human AKR7A3 were expressed and purified from Escherichia coli as hexa-histidine tagged fusion proteins. These proteins catalyzed the reduction of several model carbonyl-containing substrates. The NADPH-dependent formation of AFB1 dialcohol by recombinant human AKR7A3 was confirmed by liquid chromatography coupled to electrospray ionization mass spectrometry. Rabbit polyclonal antibodies produced using recombinant rat AKR7A1 protein were shown to detect nanogram amounts of rat and human AKR7A protein. The amount of AKR7A-related protein in hepatic cytosols of 1, 2-dithiole-3-thione-treated rats was 18-fold greater than in cytosols from untreated animals. These antibodies detected AKR7A-related protein in normal human liver samples ranging from 0.3 to 0.8 microg/mg cytosolic protein. Northern blot analysis showed varying levels of expression of AKR7A RNA in human liver and in several extrahepatic tissues, with relatively high levels in the stomach, pancreas, kidney and liver. Based on the kinetic parameters determined using recombinant human AKR7A3 and AFB1 dihydrodiol at pH 7.4, the catalytic efficiency of this reaction (k2/K, per M/s) equals or exceeds those reported for other enzymes, for example cytochrome P450s and glutathione S-transferases, known to metabolize AFB1 in vivo. These findings indicate that, depending on the extent of AFB1 dihydrodiol formation, AKR7A may contribute to the protection against AFB1-induced hepatotoxicity.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "10383892"}], "author": ["Sutter T R", "Primiano T", "Knight L P", "Groopman J D", "Kensler T W"], "relatedPublications": 0, "id": "50|r3d100010527::da51ace88a8afe843d81bc3ff3d75afb", "title": ["cDNA cloning, expression and activity of a second human aflatoxin B1-metabolizing member of the aldo-keto reductase superfamily, AKR7A3."], "relatedDatasets": 2}
105
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f102d17929ff15503434f2fef14067b0", "id": {"identifier": "10.5517/cc13vvtm", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::fadc82f2e40cba8c00b8a719b57f6f2f", "id": {"identifier": "10.5517/cc13vvvn", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6eb6ff72c852403b79b48ca039d97d0d", "id": {"identifier": "10.5517/cc13vvwp", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::35b519245b6f7d934152949586a5f714", "id": {"identifier": "10.5517/cc13vvxq", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Haloarenes undergo direct borylation using amine:BCl3:AlCl3 in the ratio of 1:1:2. After esterification the pinacol boronate esters are isolated in good yield with regioselectivity controlled by steric and electronic effects.", "author": ["Ingleson Michael J.", "Ayuso Carrillo Josue", "Del Grosso Alessandro"], "localIdentifier": [{"type": "doi", "id": "10.1039/c4cc10153g"}], "id": "50|dli_resolver::995c4d989cb7bc845d43851c868522cb", "relatedPublications": 0, "date": [""], "title": ["\"Regioselective electrophilic borylation of haloarenes\""], "relatedDatasets": 4}
106
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::dcbe48d95d53e2c66d1d515b54141891", "id": {"identifier": "aaf39550", "schema": "ncbi-p"}}], "abstract": "", "title": ["Protective immunity against mouse upper genital tract pathology correlates with high IFNγ but low IL-17 T cell and anti-secretion protein antibody responses induced by replicating chlamydial organisms in the airway"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.vaccine.2011.10.059"}], "id": "50|elsevier____::593a964ebc1c518542525e284d52bdb3", "relatedPublications": 0, "date": ["2012"], "relatedDatasets": 1}
107
{"typology": "publication", "publisher": ["International journal of biological sciences"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f7b07787245069760d6810c05d9566c4", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=23289015&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::8b82a07cf16c56f8330df3a1391b263e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=23289015&result=sequence_release", "schema": "url"}}], "abstract": "None: Pine wilt disease (PWD) caused by the pine wood nematode (PWN), Bursaphelenchus xylophilus, is one of the most devastating diseases of Pinus spp. The PWN was therefore listed as one of the most dangerous forest pests in China meriting quarantine. Virulence of the PWN is closely linked with the spread of PWD. However, main factors responsible for the virulence of PWNs are still unclear. Recently epiphytic bacteria carried by PWNs have drawn much attention. But little is known about the relationship between endophytic bacteria and virulence of B. xylophilus. In this research, virulence of ten strains of B. xylophilus from different geographical areas in six provinces of China and four pine species were tested with 2-year-old seedlings of Pinus thunbergii. Endophytic bacteria were isolated from PWNs with different virulence to investigate the relationship between the bacteria and PWN virulence. Meanwhile, the carbon metabolism of endophytic bacteria from highly and low virulent B. xylophilus was analyzed using Biolog plates (ECO). The results indicated that ten strains of PWNs showed a wide range of virulence. Simultaneously, endophytic bacteria were isolated from 90% of the B. xylophilus strains. The dominant endophytic bacteria in the nematodes were identified as species of Stenotrophomonas, Achromobacter, Ewingella, Leifsonia, Rhizobium, and Pseudomonas using molecular and biochemical methods. Moreover, S. maltophilia, and A. xylosoxidans subsp. xylosoxidans were the predominant strains. Most of the strains (80%) from P. massoniana contained either S. maltophilia, A. xylosoxidans, or both species. There was a difference between the abilities of the endophytic bacteria to utilize carbon sources. Endophytic bacteria from highly virulent B. xylophilus had a relatively high utilization rate of carbohydrate and carboxylic acids, while bacteria from low virulent B. xylophilus made better use of amino acids. In conclusion, endophytic bacteria widely exist in B. xylophilus from different pines and areas; and B. xylophilus strains with different virulence possessed various endophytic bacteria and diverse carbon metabolism which suggested that the endophytic bacteria species and carbon metabolism might be related with the B. xylophilus virulence.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.7150/ijbs.5071"}, {"type": "pbmid", "id": "23289015"}], "author": ["Tian Xiao-Jing", "Ding Xiao-Lei", "Ye Jian-Ren", "Yuan Wei-Min", "Fan Ben", "Fang Xin", "Wu Xiao-Qin"], "relatedPublications": 0, "id": "50|r3d100010527::5ccce5dd6b176efc9349b10ba9f87cb4", "title": ["Specific and functional diversity of endophytic bacteria from pine wood nematode Bursaphelenchus xylophilus with different virulence."], "relatedDatasets": 2}
108
{"typology": "publication", "publisher": ["Nature"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::660b4db0e33886d55d3b6b5d0d3c02ee", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3683556&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::bed74be4663f8d3b8e0152a084a4ce67", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3683556&result=sequence_release", "schema": "url"}}], "abstract": "None: Pattern formation in the Drosophila embryo requires the concerted expression of maternal and zygotic genes. At least nineteen genes, twelve of which are maternally expressed, are involved in the establishment of dorsal-ventral polarity. Mutations in any one of these genes result in distinct alterations of cell fates and in the formation of an abnormal dorsal-ventral pattern. Mutants of the 'dorsal group', eleven of the maternal genes, have a common recessive phenotype similar to that described for dorsal, in that cells located at ventral and lateral positions assume dorsal fates and ventral structures fail to develop. Thus the dorsal group gene products may be involved in the establishment of a gradient of positional information along the dorsal-ventral axis. We have cloned snail (sna), a zygotic gene, whose expression is essential for the correct specification of dorsal-ventral pattern. In this report, we present evidence that the complementary DNA-deduced protein product of sna contains five copies of a nucleic acid-binding finger motif previously identified in two transcription factors, and in the protein product of several putative regulatory genes.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "3683556"}], "author": ["Boulay J L", "Dennefeld C", "Alberga A"], "relatedPublications": 0, "id": "50|r3d100010527::b24db7c56d7084db8531b38296291e41", "title": ["The Drosophila developmental gene snail encodes a protein with nucleic acid binding fingers."], "relatedDatasets": 2}
109
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::d70f7edb3290fff65f1f60fae3a60f94", "id": {"identifier": "10.3886/icpsr01011.v1", "schema": "url"}}], "abstract": "This paper analyzes the implications of effective taxation of labor for profits and, hence, the location decision of a multinational enterprise. We set up a stylized partial equilibrium model and, presuming that worker effort is a function of net wages, assume that a higher employee-borne tax burden reduces effort. In turn, this raises a firm's production costs and reduces efficiency. Accordingly, we show that a higher employee-borne income tax negatively influences a multinational's profit by reducing manager effort. Furthermore, we compile data on personal income tax profiles for 49 economies and the year 2002. We decompose tax profiles into the component borne by employers and that borne by employees. We then determine effective tax rates for employees across four centiles of the distribution of gross wages: 33, 100, 167, and 500 percent of the average, following the OECD's Taxing Wages Approach. Apart from describing features of the personal income tax data, we use them to shed light on their role for bilateral foreign direct investment (FDI) stocks among the economies considered. Not surprisingly, personal income tax rates turn out relatively less important than profit tax rates for bilateral FDI stocks. The employee-borne part of labor taxes determines bilateral FDI significantly different from zero: both a higher employee-borne tax rate on average wages and, in particular, an increase in the progression from the average wage to five times the average wage is less conducive to headquarters location and, hence, reduces a country's bilateral outward FDI stocks.", "author": ["Radulescu, Doina Maria", "Egger, Peter"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:dedup_wf_001::c71fc607f40f97ce285969164c273365"}], "id": "50|dli_resolver::1007b82a73467b13b458251f38dd35d8", "relatedPublications": 0, "date": [""], "title": ["Labour Taxation and Foreign Direct Investment"], "relatedDatasets": 1, "subject": [{"scheme": "keyword", "value": "Direktinvestition"}, {"scheme": "keyword", "value": "labour taxation"}, {"scheme": "keyword", "value": "F21"}, {"scheme": "keyword", "value": "jel:F23"}, {"scheme": "keyword", "value": "jel:J30"}, {"scheme": "keyword", "value": "F23"}, {"scheme": "keyword", "value": "jel:F21"}, {"scheme": "keyword", "value": "Standortwahl"}, {"scheme": "keyword", "value": "J3"}, {"scheme": "keyword", "value": "effort"}, {"scheme": "keyword", "value": "H24"}, {"scheme": "keyword", "value": "J22"}, {"scheme": "keyword", "value": "OECD-Staaten"}, {"scheme": "keyword", "value": "foreign direct investment"}, {"scheme": "keyword", "value": "labour taxation, effort, foreign direct investment, multinational firms"}, {"scheme": "keyword", "value": "multinational firms"}, {"scheme": "keyword", "value": "Lohnsteuer"}, {"scheme": "keyword", "value": "ddc:330"}, {"scheme": "keyword", "value": "Steuerbelastung"}, {"scheme": "keyword", "value": "Multinationales Unternehmen"}, {"scheme": "keyword", "value": "jel:H24"}, {"scheme": "keyword", "value": "jel:J22"}, {"scheme": "keyword", "value": "Leistungsmotivation"}, {"scheme": "keyword", "value": "Gewinn"}]}
110
{"typology": "publication", "publisher": ["Virology journal"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::fde3b095a9f8289704055056c7f9ed4c", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24468270&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c5d8fa52558955e27ddf352a864301b3", "id": {"identifier": "kf787095", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5eb252455bf0d310580613fa3a32a4bd", "id": {"identifier": "hq317387", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::744e867155ba2a8557d841480cdc873c", "id": {"identifier": "kf787094", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::9c571dcc0e7da9f986303f8be964b5b2", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24468270&result=sequence_release", "schema": "url"}}], "abstract": "BACKGROUND: Multi-resistant Achromobacter xylosoxidans has been recognized as an emerging pathogen causing nosocomially acquired infections during the last years. Phages as natural opponents could be an alternative to fight such infections. Bacteriophages against this opportunistic pathogen were isolated in a recent study. This study shows a molecular analysis of two podoviruses and reveals first insights into the genomic structure of Achromobacter phages so far. METHODS: Growth curve experiments and adsorption kinetics were performed for both phages. Adsorption and propagation in cells were visualized by electron microscopy. Both phage genomes were sequenced with the PacBio RS II system based on single molecule, real-time (SMRT) technology and annotated with several bioinformatic tools. To further elucidate the evolutionary relationships between the phage genomes, a phylogenomic analysis was conducted using the genome Blast Distance Phylogeny approach (GBDP). RESULTS: In this study, we present the first detailed analysis of genome sequences of two Achromobacter phages so far. Phages JWAlpha and JWDelta were isolated from two different waste water treatment plants in Germany. Both phages belong to the Podoviridae and contain linear, double-stranded DNA with a length of 72329 bp and 73659 bp, respectively. 92 and 89 putative open reading frames were identified for JWAlpha and JWDelta, respectively, by bioinformatic analysis with several tools. The genomes have nearly the same organization and could be divided into different clusters for transcription, replication, host interaction, head and tail structure and lysis. Detailed annotation via protein comparisons with BLASTP revealed strong similarities to N4-like phages. CONCLUSIONS: Analysis of the genomes of Achromobacter phages JWAlpha and JWDelta and comparisons of different gene clusters with other phages revealed that they might be strongly related to other N4-like phages, especially of the Escherichia group. Although all these phages show a highly conserved genomic structure and partially strong similarities at the amino acid level, some differences could be identified. Those differences, e.g. the existence of specific genes for replication or host interaction in some N4-like phages, seem to be interesting targets for further examination of function and specific mechanisms, which might enlighten the mechanism of phage establishment in the host cell after infection.", "author": ["Johannes Wittmann", "Brigitte Dreiseikelmann", "Dreiseikelmann Brigitte", "Rohde Manfred", "Manfred Rohde", "Rohde Christine", "Christine Rohde", "Bunk Boyke", "Wittmann Johannes", "Meier-Kolthoff, Jan P.", "Boyke Bunk", "Meier-Kolthoff Jan P"], "localIdentifier": [{"type": "pmid", "id": "24468270"}, {"type": "pbmid", "id": "24468270"}, {"type": "doi", "id": "10.1186/1743-422x-11-14"}], "id": "50|dedup_wf_001::b1302ca7763ca4c1ca9494bc614e67f5", "relatedPublications": 0, "date": ["2014-01-27"], "title": ["First genome sequences of Achromobacter phages reveal new members of the N4 family."], "relatedDatasets": 5}
111
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::7a36f22c2c562cb2d1eb31353fb4cab9", "id": {"identifier": "10.5517/cczxmyf", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "In the title two-dimensional coordination polymer, {[Cu2(C9H3O6)(OH)(C10H8N2)2]·3H2O}n, each of the two independent CuII atoms is coordinated by a bridging OH group, two O atoms from two benzene-1,3,5-tri­carboxyl­ate (L) ligands and two N atoms from a 2,2- bi­pyridine (bipy) ligand in a distorted square-pyramidal geometry. Each L ligand coordinates four CuII atoms, thus forming a polymeric layer parallel to the bc plane with bipy molecules protruding up and down. The lattice water mol­ecules involved in O—H⋯· O hydrogen bonding are situated in the inner part of each layer. The crystal packing is consolidated by π–π inter­actions between the aromatic rings of bipy ligands from neigbouring layers [inter­centroid distance = 3.762 (3) A].", "author": ["Abuhmaiera Ramadan G.", "Treish Fathia A.", "El-kaheli Mohamed N.", "El-mehdawi Ramadan M.", "Guerri Annalisa", "Bazzicalupi Carla", "Ben Younes Mufida M."], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536814013877"}], "id": "50|dli_resolver::323ff78bf011457cec523d6361f9d18e", "relatedPublications": 0, "date": [""], "title": ["\"Poly(μ4-benzene-1,3,5-tricarboxylato-κ4O1:O1′:O2:O3)bis(2,2-bipyridine-κ2N,N′)(μ2-hydroxido)dicopper(II) trihydrate\""], "relatedDatasets": 1}
112
{"typology": "publication", "publisher": ["Pensoft Publishers"], "doiRels": [{"relationSemantic": "isNewVersionOf", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a8a23d6ab21b63ab192aa3b4607dd017", "id": {"identifier": "10.15468/mauwy1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Peng Xianjin", "Wang Cheng"], "localIdentifier": [{"type": "doi", "id": "10.3897/zookeys.464.8403"}], "id": "50|dli_resolver::48f303b8b40e8f9b07042a8c24c63f8c", "relatedPublications": 0, "date": [""], "title": ["Three species of Hitobia Kamura, 1992 (Araneae, Gnaphosidae) from south-west China"], "relatedDatasets": 1}
113
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::9446f089514b99d712d350471b10f1fd", "id": {"identifier": "10.3886/icpsr20520.v2", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Hollander, Paul"], "localIdentifier": [{"type": "icpsr", "id": "68627"}], "relatedPublications": 0, "title": ["New insights: A review of Ruben Rumbaut's 'transformations: 'The post immigrant generation in age of diversity'"], "id": "50|r3d100010255::77af475d9c7a303e215448a870ccbaac"}
114
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6c081a7a17ff89ff24b9f96c70dfb9eb", "id": {"identifier": "dq339686", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5921b2eefbc8549eb0997423039fa943", "id": {"identifier": "dq339646", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5918277ec5f36f0e841c4827da41518b", "id": {"identifier": "dq339694", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::0206c9b722ce47306a3fa7c629080f31", "id": {"identifier": "dq339669", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ccfc5dbaf096fc8f00d645efc03707f9", "id": {"identifier": "dq339644", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::94daabe7a8484c6fdce400bacb79e6b2", "id": {"identifier": "dq339667", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::de3390a105ef964d89a338718629052d", "id": {"identifier": "dq339654", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::a7c5831d0f052601b4c12585f341a409", "id": {"identifier": "dq339693", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::effd5da609265df36a0351fd542eac23", "id": {"identifier": "dq339649", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3afb3be86ba56c31240b617f7df698f7", "id": {"identifier": "dq339685", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::33f99251a63870ac4784b52c9a07e3d2", "id": {"identifier": "dq339680", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::bc22d0e62f3aaf1497ad122b018ca71f", "id": {"identifier": "dq339682", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::19cb2da43f35547e2d367eae9fd641cc", "id": {"identifier": "dq339663", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c6c07ca1e5ad807bfb0f8c7ec8eaf6c6", "id": {"identifier": "dq339658", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c2648a6e77232f0fa9f296b062e6a6af", "id": {"identifier": "dq339651", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::94c6151e94dc1655ea2d6bc4319ff21e", "id": {"identifier": "dq339664", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::283bc4ba319e52bc8f1a44f2a0c0dfd7", "id": {"identifier": "dq339674", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::0ffc1eb557caeed4557221f4fa42f5c2", "id": {"identifier": "dq339641", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::a50a3088eacb7f7d4aba5f420de9c672", "id": {"identifier": "dq339642", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::1d6b9ee70a2f0da34d7555d066e670da", "id": {"identifier": "dq339653", "schema": "ena"}}], "abstract": "", "author": ["Evans, Jay D.", "Tamieka-Nicole Armstrong"], "localIdentifier": [{"type": "pmid", "id": "16551367"}], "id": "50|pubmed______::4b3865e29569633366da2cf3e57e8f35", "relatedPublications": 0, "date": ["2006-03-21"], "title": ["Antagonistic interactions between honey bee bacterial symbionts and implications for disease."], "relatedDatasets": 60}
115
{"typology": "publication", "publisher": ["Molecular phylogenetics and evolution"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::da4be3e158abcefd97d68a6c50ac6df2", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26850687&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::147b6eb09a817dbbbca851d0bb02a400", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26850687&result=noncoding_release", "schema": "url"}}], "abstract": "None: Wood-decaying fungi are essential components of degradation systems in forest ecosystems. However, their species diversity and ecological features are largely unknown. Three methods are commonly used to investigate fungal diversity: fruiting body collection, culturing, and environmental DNA analysis. Because no single method fully characterises fungal diversity, complementary approaches using two or more methods are required. However, few studies have compared the different methods and determined the best way to characterise fungal diversity. To this end, we investigated wood-decomposing Dacrymycetes (Agaricomycotina, Basidiomycota) using a complementary approach combining fruiting body collection, culturing, and environmental DNA analysis, thereby offering an effective approach for investigating the diversity of saprotrophic mushrooms. Fruiting body collection, culturing, and environmental DNA analysis detected 11, 10, and 16 operational taxonomic units (OTUs; 25 OTUs in total) and identified three, seven, and seven novel lineages, respectively. The three methods were complementary to each other to detect greater Dacrymycetes diversity. The culturing and environmental DNA analysis identified three early-diverging lineages that were not identified in the fruiting body collection suggesting that diverse lineages lacking observable fruiting bodies remain undiscovered. Such lineages may be important to understand Dacrymycetes evolution. To detect early branches of Dacrymycetes more efficiently, we recommend a combined approach consisting of a primary environmental DNA survey to detect novel lineages and a secondary culture survey to isolate their living mycelia. This approach would be helpful for identifying otherwise-undetectable lineages, and could thus uncover missing links that are important for understanding the evolution of mushroom-forming fungi.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "26850687"}, {"type": "doi", "id": "10.1016/j.ympev.2016.01.015"}], "author": ["Uno Kunihiko", "Hosaka Kentaro", "Shirouzu Takashi", "Hosoya Tsuyoshi"], "relatedPublications": 0, "id": "50|r3d100010527::e12214411fd5e2dadc5b0490f860c5cf", "title": ["Early-diverging wood-decaying fungi detected using three complementary sampling methods."], "relatedDatasets": 2}
116
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b903baf232804d90a75e2ce7a46fe034", "id": {"identifier": "10.5517/cc6m813", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The stoichiometric reaction of NiCl2·6H2O with sodium 4-imidazoleacetate Na(IA) in absolute MeOH yields blue crystals of Ni(IA)2·4H2O·2MeOH (1). This product decomposes rapidly in air, losing two MeOH molecules and producing Ni(IA)2·4H2O (2). Compound (1) when left in the mother liquor, slowly recrystallizes forming [Ni(IA)2(MeOH)2] (3), which is stable in air and suitable for single crystal X-ray diffraction studies. These crystals consist of slightly distorted octahedral coordination units in which the carboxylic oxygen, imidazole N3 nitrogen and the MeOH oxygen atoms act as coordination centers. The i.r. features, due to MeOH molecules, were employed to characterize the compounds studied. The reflectance spectrum of (3) was interpreted on the basis of octahedral and tetragonal symmetry of the NiO4N2 chromophore.", "author": ["Głowiak Tadeusz", "Drożdżewski Piotr", "Pawlak Barbara"], "localIdentifier": [{"type": "doi", "id": "10.1023/a:1025471710528"}], "id": "50|dli_resolver::8ae99f79f56497e435e799fcbb686109", "relatedPublications": 0, "date": [""], "relatedDatasets": 1}
117
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::a84e6c093ad0cca6a3032dbf3a6e7676", "id": {"identifier": "dq479427", "schema": "ncbi-n"}}], "abstract": "", "title": ["Development of an endoplasmic reticulum calcium sensor based on fluorescence resonance energy transfer"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.snb.2017.03.083"}], "id": "50|elsevier____::889476d6510791c2e2b5fc4f2674a08c", "relatedPublications": 0, "date": ["2017"], "relatedDatasets": 1}
118
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ab08da67dca4522d25e9896a67b29940", "id": {"identifier": "10.3886/icpsr02258.v5", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Schramka, Gregory D."], "localIdentifier": [{"type": "icpsr", "id": "35420"}], "relatedPublications": 0, "title": ["The relationship between client characteristics and retention in a metropolitan drug treatment center (DTC)"], "id": "50|r3d100010255::1743ef210b474f305a445f7b9870c2ff"}
119
{"typology": "publication", "publisher": ["Nature"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::12eac31b2d2fac1e1b0e899d686c1876", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3753747&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::642da1f62c51b9f2129a8636147b9121", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3753747&result=sequence_release", "schema": "url"}}], "abstract": "None: Acetylcholinesterase, an essential enzyme of the nervous system, rapidly terminates the action of acetylcholine released into the synapse. Acetylcholinesterase is also found (in lower abundance) in extrajunctional areas of muscle and nerve and on erythrocyte membranes. Hydrodynamic analyses of the native enzyme and characterization of its dissociated subunits have revealed multiple enzyme forms which can be divided into two classes: dimensionally asymmetric forms which are usually found within the synapse and contain a collagen-like structural subunit disulphide-linked to the catalytic subunits; and globular forms which appear to be widely distributed on the outer surface of cell membranes. Both forms have been characterized in the ray Torpedo californica and, although their catalytic behaviours seem to be identical, they differ slightly in amino-acid composition, peptide maps and reactivity with certain monoclonal antibodies. Here, we report the complete amino-acid sequence of an acetylcholinesterase inferred from the sequence of a complementary DNA clone. The 575-residue protein shows significant homology with the C-terminal portion of thyroglobulin.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "3753747"}], "author": ["Newton M", "Camp S", "Schumacher M", "Friedmann T", "Maulet Y", "Taylor P", "MacPhee-Quigley K", "Taylor S S"], "relatedPublications": 0, "id": "50|r3d100010527::1dbd935160329c7a718160e2999ea1f2", "title": ["Primary structure of Torpedo californica acetylcholinesterase deduced from its cDNA sequence."], "relatedDatasets": 2}
120
{"typology": "publication", "datasources": [{"completionStatus": "complete", "datasourceId": "dli_________::r3d100010255", "datasourceName": "ICPSR"}], "relatedUnknown": 0, "externalRels": [], "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f1eeafb8583536a3883853504a18914f", "id": {"identifier": "10.3886/icpsr07439.v1", "schema": "doi"}}], "localIdentifier": [{"type": "icpsr", "id": "7145"}], "author": ["Corcoran, Mary"], "relatedPublications": 0, "id": "50|r3d100010255::829585b30f8a35c511ed74fee908243f", "title": ["Measurement Error in Status Attainment Models"], "relatedDatasets": 1}
121
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::00bda02dff7e0379a1eaabf31eea4a20", "id": {"identifier": "10.5517/ccr0yc1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e13f519a070894d4f7090c0111b93b3c", "id": {"identifier": "10.5517/ccnqbvj", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e47c9117a562aab661e7065a3d2dcf21", "id": {"identifier": "10.5517/ccnqbwk", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Chancellor Christopher J.", "Olmstead Marilyn M.", "Beavers Christine M.", "Balch Alan L.", "Thorn Adrienne A."], "localIdentifier": [{"type": "doi", "id": "10.1021/cg070643r"}], "id": "50|dli_resolver::977d0fffc041864eec032de0b8c5003a", "relatedPublications": 0, "date": [""], "title": ["\"Bilayer Packing of Amphiphilic Cationic Fullerenes in Crystalline Salts: Models for Self-Assembled Nanostructures\""], "relatedDatasets": 3}
122
{"typology": "publication", "publisher": ["Biotechnology letters"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::a0ef9d85a46959e3818e54b4227e7fbf", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21671091&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::0d9f1d5b807f1a96d2930462708c33f1", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21671091&result=sequence_release", "schema": "url"}}], "abstract": "None: The main toxicity mechanism of Lysinibacillus sphaericus, which is used in the control of mosquitoes, is its binary toxin produced during sporulation; additionally the Mtx1, Mtx2 and Mtx 3 toxins are expressed in vegetative cells. Mosquito larvicidal potency of the S-layer protein that is expressed in vegetative cells has been determined. The protein is similar to other S-layer proteins of mosquitocidal L. sphaericus strains. The LC50 values of the S-layer protein of the L. sphaericus OT4b25, OT4b26, and III(3)7 strains against third-instar larvae of Culex quinquefasciatus were 8.7, 24 and 0.68 μg/ml, respectively. To our knowledge this is the first study showing the mosquito larvicidal potency of the S-layer protein from Lysinibacillus sphaericus.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1007/s10529-011-0666-9"}, {"type": "pbmid", "id": "21671091"}], "author": ["Lozano Lucía C", "Dussán Jenny", "Ayala Juan A"], "relatedPublications": 0, "id": "50|r3d100010527::8dcf421c84d3449ed64eac99937ddbed", "title": ["Lysinibacillus sphaericus S-layer protein toxicity against Culex quinquefasciatus."], "relatedDatasets": 2}
123
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4a5da6d0b2277a0411be93027466e38d", "id": {"identifier": "10.5517/ccqgc5p", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::344fd36e4dd191cfbd9d99dfd6fe0b74", "id": {"identifier": "10.5517/ccqgc6q", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The molecules of 2-amino-4,6-bis[N-methyl-N-(4-methylphenyl)amino]pyrimidine-5-carbaldehyde, C21H23N5O, (I), and 2-amino-4-(indolin-1-yl)-6-methoxypyrimidine-5-carbaldehyde, C14H14N4O2, (II), which crystallizes with Z′ = 2 in the space group P, exhibit polarized electronic structures. Molecules of (I) are linked by a combination of N—H...O, C—H...O and C—H...π(arene) hydrogen bonds into a three-dimensional framework structure, while those of (II) are linked into sheets by a combination of two N—H...O hydrogen bonds and one N—H...π(arene) hydrogen bond.", "author": ["Trilleras Jorge", "Low John N.", "Cobo Justo", "Marchal Antonio", "Glidewell Christopher"], "localIdentifier": [{"type": "doi", "id": "10.1107/s0108270107048809"}], "id": "50|dli_resolver::d0b1dc2197e22876f1327391528973a1", "relatedPublications": 0, "date": [""], "title": ["\"A three-dimensional hydrogen-bonded framework in 2-amino-4,6-bisN-methyl-N-(4-methylphenyl)aminopyrimidine-5-carbaldehyde and hydrogen-bonded sheets in 2-amino-4-(indolin-1-yl)-6-methoxypyrimidine-5-carbaldehyde\""], "relatedDatasets": 2}
124
{"typology": "publication", "publisher": ["Journal of microbiology (Seoul, Korea)"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::0b690a696331b93cfda7fd6bd2f4273b", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21717335&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::634088a9405e710a0d39b034b69f63fa", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21717335&result=coding_release", "schema": "url"}}], "abstract": "None: The reducing polyketide synthases found in filamentous fungi are involved in the biosynthesis of many drugs and toxins. Lichens produce bioactive polyketides, but the roles of reducing polyketide synthases in lichens remain to be clearly elucidated. In this study, a reducing polyketide synthase gene (U1PKS3) was isolated and characterized from a cultured mycobiont of Usnea longissima. Complete sequence information regarding U1PKS3 (6,519 bp) was obtained by screening a fosmid genomic library. A U1PKS3 sequence analysis suggested that it contains features of a reducing fungal type I polyketide synthase with β-ketoacyl synthase (KS), acyltransferase (AT), dehydratase (DH), enoyl reductase (ER), ketoacyl reducatse (KR), and acyl carrier protein (ACP) domains. This domain structure was similar to the structure of ccRadsl, which is known to be involved in resorcylic acid lactone biosynthesis in Chaetomium chiversii. The results of phylogenetic analysis located U1PKS3 in the clade of reducing polyketide synthases. RT-PCR analysis results demonstrated that UIPKS3 had six intervening introns and that UIPKS3 expression was upregulated by glucose, sorbitol, inositol, and mannitol.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1007/s12275-011-0362-4"}, {"type": "pbmid", "id": "21717335"}], "author": ["Cheong Yong Hwa", "Joshi Yogesh", "Hur Jae-Seoun", "Wang Yi", "Koh Young Jin", "Kim Jung A"], "relatedPublications": 0, "id": "50|r3d100010527::4d277b8c78f6fe0bfcd4d5ee982ab77b", "title": ["Isolation and characterization of a reducing polyketide synthase gene from the lichen-forming fungus Usnea longissima."], "relatedDatasets": 2}
125
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::cf0719d230c87ac06186aae0666c83bd", "id": {"identifier": "10.5517/ccdc.csd.cc1zsdv0", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Lin Hou-Wen", "Yang Fan", "Tang Jie", "Sun Fan", "Wang Shu-Ping", "Yang Zhong-Zhen", "Tang Wei-Zhuo", "Cheng Chun-Wei", "Wu Wei"], "localIdentifier": [{"type": "doi", "id": "10.1021/acs.jnatprod.7b01006"}], "id": "50|dli_resolver::ce37eef2dbb7a456f0fd8d32e4cab221", "relatedPublications": 0, "date": [""], "title": ["Imidazole Alkaloids and Their Zinc Complexes from the Calcareous Marine Sponge Leucetta chagosensis"], "relatedDatasets": 1}
126
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8ac6cd28b9c0b4a854b78d430dc1ae47", "id": {"identifier": "10.5517/ccdc.csd.cc1llntn", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::cc14235d8172340e1491e2667a0bf086", "id": {"identifier": "10.5517/ccdc.csd.cc1llp40", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8c96aa7ff2827192dfb0dfcdc89d20d7", "id": {"identifier": "10.5517/ccdc.csd.cc1llp62", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0aa3ed5765d79a0b514d82c51a578544", "id": {"identifier": "10.5517/ccdc.csd.cc1llp95", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::44f58c4e0fc817bdeafff2c06e39751c", "id": {"identifier": "10.5517/ccdc.csd.cc1llp1x", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d29fa5f40236807ee079aff4fd6f7b38", "id": {"identifier": "10.5517/ccdc.csd.cc1llpb6", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::bcab3be0dfc999e6384f109c37cae985", "id": {"identifier": "10.5517/ccdc.csd.cc1llnys", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::30272126681c6b609b6e1054c2672223", "id": {"identifier": "10.5517/ccdc.csd.cc1llpc7", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::871a42b634557c9bdd35f63c0df41096", "id": {"identifier": "10.5517/ccdc.csd.cc1llnvp", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6e890f6cf23834c44d2697482c5203bc", "id": {"identifier": "10.5517/ccdc.csd.cc1llnzt", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::03414a264ce07d08e1f413884867d56b", "id": {"identifier": "10.5517/ccdc.csd.cc1llp0w", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b875c4f32067bf1478246304ed2bd287", "id": {"identifier": "10.5517/ccdc.csd.cc1llp3z", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c0a80a83081a5dc6040752f8a7961e2c", "id": {"identifier": "10.5517/ccdc.csd.cc1llnwq", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d932cf27703ef6217fb4aae2c5e08590", "id": {"identifier": "10.5517/ccdc.csd.cc1llp51", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::17136219788bf008e2e5c2b997871f3d", "id": {"identifier": "10.5517/ccdc.csd.cc1llp84", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::3e4d1f425b20d4ae78c76257f7d4b894", "id": {"identifier": "10.5517/ccdc.csd.cc1llnxr", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f963f9fb3f811bedcf2f67d8d335dfb4", "id": {"identifier": "10.5517/ccdc.csd.cc1llp2y", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6de9856687a95be15f6fa6533b2b9fda", "id": {"identifier": "10.5517/ccdc.csd.cc1llnsm", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::78a3e5f90e4a0b0fefd113d3c32dd5f4", "id": {"identifier": "10.5517/ccdc.csd.cc1llp73", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Dange Deepak", "Boutland Aaron J.", "Stasch Andreas", "Maron Laurent", "Jones Cameron"], "localIdentifier": [{"type": "doi", "id": "10.1002/anie.201604362"}], "id": "50|dli_resolver::af3ece4c47ff380dacdcf56c5491c1f9", "relatedPublications": 0, "date": [""], "title": ["\"Two-Coordinate Magnesium(I) Dimers Stabilized by Super Bulky Amido Ligands\""], "relatedDatasets": 19}
127
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::9446f089514b99d712d350471b10f1fd", "id": {"identifier": "10.3886/icpsr20520.v2", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Serdarevic, Mirsad"], "localIdentifier": [{"type": "icpsr", "id": "86360"}], "relatedPublications": 0, "title": ["Mediating Effects of Parenting on Immigrant Youth Educational and Psychological Outcomes"], "id": "50|r3d100010255::7d9e9dace0e5c2452195069dfaed8b3d"}
128
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::99393e91287f543feed49e362a9836f6", "id": {"identifier": "m32638", "schema": "ena"}}], "abstract": "", "author": ["Wu, M.", "Js, Kao"], "localIdentifier": [{"type": "pmid", "id": "2349113"}], "id": "50|pubmed______::4701e3423c9bc949fda47d65dc3861e6", "relatedPublications": 0, "date": ["1990-05-01"], "title": ["The sequence of the plastid encoded rpl22 protein in marine macroalgae, Gracilaria tenuistipitata."], "relatedDatasets": 1}
129
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::91e7f1b5fc25eff262235a066caf0219", "id": {"identifier": "5b5l", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::5cc687bebb53ba8529c9a8198cbefb81", "id": {"identifier": "4tx1", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::b6861dce5add9fb7a5564844332b0794", "id": {"identifier": "5b5s", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::937430c56549dd10289b3ffbdc81f25e", "id": {"identifier": "3x0h", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::d7369d877b78cc9a5bc60eb9d8281a8c", "id": {"identifier": "4k7j", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::54a8081efd7be65bd02a2adc98300d66", "id": {"identifier": "3cl5", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::329eec73c8d218e3526abc8eea1da65b", "id": {"identifier": "1wab", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::d3a90c0eb4e75e3583f191128c201498", "id": {"identifier": "2vpt", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::38850b442ddc6cd2875318700d66a943", "id": {"identifier": "bap90856", "schema": "ncbi-p"}}], "abstract": "", "title": ["Crystal structure of an acetyl esterase complexed with acetate ion provides insights into the catalytic mechanism"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.bbrc.2016.06.093"}], "id": "50|elsevier____::4401c0a554cf106c9dbfb574cf31788b", "relatedPublications": 0, "date": ["2016"], "relatedDatasets": 14}
130
{"typology": "publication", "publisher": ["Journal of bacteriology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::65a8125337183d1fd566282cbb484fb7", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21685274&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "", "dnetId": "60|pubmed______::de2f4576033522253d29ab0b73efb461", "id": {"identifier": "cp002329", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::68a8918ecca89d4b07a482a1bf63fcf8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21685274&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c12461bbde36a7d444ae0b400dbcb316", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21685274&result=study", "schema": "url"}}], "abstract": "None: Mycobacteriosis is on the increase. Nontuberculous mycobacteria (NTM) are resistant to most antituberculosis drugs naturally. We determined the complete genome sequence of a novel NTM strain, JDM601, of the Mycobacterium terrae complex, which was isolated from a patient with tuberculosis-like disease and with various antibiotic resistances.", "author": ["Sun Zhan-Qiang", "Zhuo-Yang Zhang", "Jun-Wei Zhao", "Wen Zi-Lu", "Hong-Hai Wang", "Sun Qing-Wen", "Song Yan-Zheng", "Zhang Zhuo-Yang", "Wang Zi-Ling", "Guo Xiao-Kui", "Zhang Shu-Lin", "Wang Hong-Hai", "Zi-Lu Wen", "Qing-Wen Sun", "Yan-Zheng Song", "Xiao-Kui Guo", "Zhao Jun-Wei", "Zhao-Qin Zhu", "Zhu Zhao-Qin", "Zhan-Qiang Sun", "Zi-Ling Wang", "Shu-Lin Zhang"], "localIdentifier": [{"type": "pbmid", "id": "21685274"}, {"type": "doi", "id": "10.1128/jb.05291-11"}, {"type": "pmid", "id": "21685274"}], "id": "50|dedup_wf_001::8466429106d804a72fb5b9ef98af93a4", "relatedPublications": 0, "date": ["2011-06-17"], "title": ["Complete genome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."], "relatedDatasets": 4}
131
{"typology": "publication", "publisher": ["Parasitology research"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::d15eb355b49cded0d71e2423bec81077", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=17048002&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f39003574a081ac5506047f378522671", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=17048002&result=noncoding_release", "schema": "url"}}], "abstract": "None: We studied six species of lice from three of the four suborders of lice. These lice were infected with Wolbachia bacteria from supergroups A and F. This is the first report of an infection of supergroup F Wolbachia in lice. To date, Wolbachia from supergroup F have been found in filarial nematodes, Mansonella spp., and, rarely, in insects. We inferred the phylogeny of the Wolbachia from lice and representatives of all Wolbachia supergroups, with nucleotide sequences from the small subunit ribosomal RNA gene (SSU rRNA). There was no evidence of congruence between the taxon of louse and the Wolbachia bacteria that infect lice. There is no evidence that Wolbachia and their louse hosts co-evolved at least at the level of Wolbachia supergroups. We propose a novel mechanism for the horizontal transfer of Wolbachia between different species of lice from birds: transfer of Wolbachia during phoresis by hippoboscid flies.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "17048002"}], "author": ["Covacin Catherine", "Barker Stephen C"], "relatedPublications": 0, "id": "50|r3d100010527::ee0f691bb71c1a5cd249afdd836e9a28", "title": ["Supergroup F Wolbachia bacteria parasitise lice (Insecta: Phthiraptera)."], "relatedDatasets": 2}
132
{"typology": "publication", "publisher": ["Neuroreport"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5c829746b16c3cf8deb7057f98494d48", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10424669&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3e1409c875e733a678b52c398870c5a3", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10424669&result=coding_release", "schema": "url"}}], "abstract": "None: The cDNAs for glyceraldehyde-3-phosphate dehydrogenase (GAPDH; EC 1.2.1.12) were cloned from cerebellar neurons undergoing age-induced apoptosis and/or healthy cells. COS-7 cells were transfected with the isolated GAPDH cDNAs using to the Lipofectamine method. Assessment of cell death in this paradigm was performed by monitoring the co-transfected luciferase activities and the characterization of cell death was examined by the DNA fragmentation assay and Hoechst dye nuclear staining. These observations show that over-expression of GAPDH occurring from both cDNAs robustly induces apoptotic death in the transfected COS-7 cell cultures. Confocal-immunocytochemical studies using this GAPDH-specific monoclonal antibody revealed that nuclear translocation of overexpressed GAPDH is a primary apoptotic event. Our results directly demonstrate that over-expressed GAPDH functions as a 'killing protein' in apoptosis.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "10424669"}], "author": ["Tsuchiya K", "Ishitani R", "Tajima H", "Kondo K", "Katsube N", "Yamada M"], "relatedPublications": 0, "id": "50|r3d100010527::7254b01502c13f80de3842992b4eb0f5", "title": ["Over-expression of GAPDH induces apoptosis in COS-7 cells transfected with cloned GAPDH cDNAs."], "relatedDatasets": 2}
133
{"typology": "publication", "publisher": ["American Society for Biochemistry & Molecular Biology (ASBMB)"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::8bb9a802aea35152fea42ce1d00f9bc3", "id": {"identifier": "3onw", "schema": "pdb"}}], "abstract": "Abstract GoLoco motif proteins bind to the inhibitory Gi subclass of G-protein α subunits and slow the release of bound GDP; this interaction is considered critical to asymmetric cell division and neuro-epithelium and epithelial progenitor differentiation. To provide protein tools for interrogating the precise cellular role(s) of GoLoco motif/Gαi complexes, we have employed structure-based protein design strategies to predict gain-of-function mutations that increase GoLoco motif binding affinity. Here, we describe fluorescence polarization and isothermal titration calorimetry measurements showing three predicted Gαi1 point mutations, E116L, Q147L, and E245L; each increases affinity for multiple GoLoco motifs. A component of this affinity enhancement results from a decreased rate of dissociation between the Gα mutants and GoLoco motifs. For Gαi1Q147L, affinity enhancement was seen to be driven by favorable changes in binding enthalpy, despite reduced contributions from binding entropy. The crystal structure of Gαi1Q147L bound to the RGS14 GoLoco motif revealed disorder among three peptide residues surrounding a well defined Leu-147 side chain. Monte Carlo simulations of the peptide in this region showed a sampling of multiple backbone conformations in contrast to the wild-type complex. We conclude that mutation of Glu-147 to leucine creates a hydrophobic surface favorably buried upon GoLoco peptide binding, yet the hydrophobic Leu-147 also promotes flexibility among residues 511–513 of the RGS14 GoLoco peptide.", "author": ["Muller Robin E.", "Kimple Adam J.", "Miley Michael J.", "Siderovski David P.", "Sammond Deanne W.", "Willard Francis S.", "Machius Mischa", "Bosch Dustin E.", "Kuhlman Brian"], "localIdentifier": [{"type": "doi", "id": "10.1074/jbc.m110.190496"}], "id": "50|dli_resolver::f1d6452abf772f4e3a6c19750491c467", "relatedPublications": 0, "date": [""], "title": ["\"Structural Determinants of Affinity Enhancement between GoLoco Motifs and G-Protein α Subunit Mutants\""], "relatedDatasets": 1}
134
{"typology": "publication", "publisher": ["Biology of reproduction"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::b901a059fc8395b3051455be2db83c3e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=12672658&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::819e71a465ffc88e3c076d710b0acc32", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=12672658&result=coding_release", "schema": "url"}}], "abstract": "None: We isolated cDNA clones for the novel actin-like proteins T-ACTIN 1 and T-ACTIN 2, which are expressed specifically in the mouse testis. These clones were from a subtracted cDNA library that was enriched for haploid germ cell-specific cDNAs. The mRNA sizes and deduced molecular masses of t-actin 1/mACTl7b and t-actin 2/mACTl7a were 2.2 kilobases (kb) and 1.8 kb, and Mr 43.1 x 10(3) and Mr 47.2 x 10(3), respectively. The two deduced amino acid sequences had 60% homology, and they had approximately 40% homology with other actins. The T-ACTINs contained some of the conserved regions seen in other actins. Although the cellular locations of these two proteins are quite different (T-ACTIN-1 was found in the cytoplasm and T-ACTIN-2 was located in the nucleus), the expression of their proteins and mRNAs is controlled during development and limited during spermiogenesis. In contrast, only T-ACTIN-2 was present in sperm heads and tails. These results suggest that T-ACTINs play important roles in sperm function and in the specific morphogenesis of spermatozoa during spermiogenesis.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "12672658"}], "author": ["Nishimune Yoshitake", "Tadokoro Yuko", "Tanaka Hiromitsu", "Yomogida Kentaro", "Egydio de Carvalho Carlos", "Iguchi Naoko"], "relatedPublications": 0, "id": "50|r3d100010527::8f0edc21a595b8865da7314d982ac3fb", "title": ["Novel actin-like proteins T-ACTIN 1 and T-ACTIN 2 are differentially expressed in the cytoplasm and nucleus of mouse haploid germ cells."], "relatedDatasets": 2}
135
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b76b2ed9aa32690040f34da4bb19a518", "id": {"identifier": "aanu01128648.1", "schema": "ena"}}, {"relationSemantic": "unknown", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::ba40bf9197d64db347e1cea37ca31be2", "id": {"identifier": "aanu01128648.1", "schema": "ncbi-wgs"}}], "abstract": "", "author": ["Mei-Yun Zhang", "Jingjing Li", "Yu Zhang", "Dimitrov, Dimiter S.", "Tingting Yuan", "Yanping Wang", "Emily Streaker"], "localIdentifier": [{"type": "pmid", "id": "21807049"}, {"type": "doi", "id": "10.1016/j.vaccine.2011.07.046"}], "id": "50|dedup_wf_001::1d5a1b279dbb60b03ee1f2430ff51bfe", "relatedPublications": 0, "date": ["2011-07-30"], "title": ["Putative rhesus macaque germline predecessors of human broadly HIV-neutralizing antibodies: differences from the human counterparts and implications for HIV-1 vaccine development."], "relatedDatasets": 2}
136
{"typology": "publication", "publisher": ["Journal of animal science"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::308420f51504db8cc7aec84836c724c6", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18407985&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3d6bbf5104a75e2961a30aeb114c5a5d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18407985&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::d41d59926c9908ebfd79aaa7dde08269", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18407985&result=read_experiment", "schema": "url"}}], "abstract": "None: Adipose triglyceride lipase (ATGL) was recently identified and described as a major novel triglyceride lipase in animals. In this study, we aimed to study the tissue-specific and developmental expression pattern of porcine ATGL (pATGL) and the effect of resveratrol (RES) on expression of pATGL in vitro. The full-length cDNA sequence of pATGL was 1,958 bp (accession no. EF583921), with a 1,458-bp open reading frame encoding a 486-AA protein (the predicted molecular mass of 53.2 kDa, accession no. ABS58651). Comparison of the deduced AA sequence with the bovine, mouse, rat, dog, and human adipose triglyceride lipase showed 87, 84, 83, 81, and 80% similarity, respectively. Furthermore, the pATGL was highly expressed in porcine adipose tissue, to a lesser degree in kidney, heart, and muscle, and least but detectable in brain. In s.c. adipose tissue, pATGL mRNA was low at birth (1 kg of BW) and then increased, reaching a maximal value at 20 kg of BW (approximately 8 wk old; P < 0.01). In peritoneal and omental adipose tissue, the greatest expression of pATGL was observed at 40 kg of BW (approximately 12 wk old). In vitro, exposure of cultured adipocytes to 40 and 80 muM RES for 24 h increased the mRNA levels of pATGL by 95.3% (P < 0.05) and 146.8% (P < 0.01), respectively. Accordingly, lipid accumulation was decreased by 25.7% (P < 0.05) and 60.8% (P < 0.01), respectively. When treated with RES for 48 h, the mRNA levels of pATGL were increased by 104.1% (P < 0.05) and 163.1% (P < 0.01), respectively. As expected, lipid accumulation was decreased by 9.7% (P > 0.05) and 29.0% (P < 0.05), respectively. These results add to our understanding of the role of pATGL in adipose tissue development and as a potential target for regulating fat deposition and meat quality.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.2527/jas.2007-0659"}, {"type": "pbmid", "id": "18407985"}], "author": ["Liu J", "Guo J", "Feng J", "Wu T", "Wang Y", "Xu Z", "Shan T"], "relatedPublications": 0, "id": "50|r3d100010527::4ae07cfa9bbc1b5002cfaa144e404676", "title": ["Porcine adipose triglyceride lipase complementary deoxyribonucleic acid clone, expression pattern, and regulation by resveratrol."], "relatedDatasets": 3}
137
{"typology": "publication", "publisher": ["Studies in mycology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::09065710cad810dbf0036e0f561ac000", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=27872508&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::52ba21a5636936547fd871312bff2fb8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=27872508&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::9fac204e50e3e505c64b39119b68f18b", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=27872508&result=noncoding_release", "schema": "url"}}], "abstract": "None: A multigene analysis of a combined ITS-LSU-SSU-rpb2-tef1 sequence data matrix was applied to infer the phylogenetic position of the genus Thyridaria in the Pleosporales. The generic type of Thyridaria, T. broussonetiae (syn. T. incrustans), is situated in a clade currently named Roussoellaceae, which becomes a synonym of Thyridariaceae. However, Thyridaria rubronotata does not belong to this clade, but is here recognised as Cyclothyriella rubronotata in its own family Cyclothyriellaceae. The Thyridariaceae contain the genera Thyridaria, Roussoella, Roussoellopsis, Neoroussoella and the new genus Parathyridaria. Roussoella acaciae is combined in Thyridaria and Roussoella percutaenea in Parathyridaria. Ohleria modesta and an additional new thyridaria-like genus, Hobus, are found to represent isolated lineages with unresolved phylogenetic affinites within the Pleosporales. For Ohleria the new family Ohleriaceae is established. Melanomma fuscidulum belongs to Nigrograna, and three new species are described in this genus. A strain named Biatriospora marina clusters with Nigrograna. Based on the newly recognised species in Nigrograna, morphology and ecology do in no way correlate among these genera, therefore we erect the new family Nigrogranaceae for Nigrograna and recommend to discontinue the use of the family name Biatriosporaceae until fresh material of B. marina becomes available for sequencing.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "27872508"}], "author": ["Voglmayr H", "Jaklitsch W M"], "relatedPublications": 0, "id": "50|r3d100010527::6fbb4b38e4d1d645abcfe1b989a27635", "title": ["Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae."], "relatedDatasets": 3}
138
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9317bb74d77cba3092305be588c0987b", "id": {"identifier": "10.3886/icpsr07896.v2", "schema": "doi"}}, {"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::b1042d83fb4874231e5534b49ff668cb", "id": {"identifier": "10.3886/icpsr06961.v1", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::b9b7cf95e87bbe470957aaa1b73a4be0", "id": {"identifier": "10.3886/icpsr06961", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9317bb74d77cba3092305be588c0987b", "id": {"identifier": "10.3886/icpsr07896.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::b1042d83fb4874231e5534b49ff668cb", "id": {"identifier": "10.3886/icpsr06961.v1", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::4c8459e53a3a061c7e589ec6cf44d926", "id": {"identifier": "10.3886/icpsr07896", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2d4510f5a97135a16785f50eba19bb1b", "id": {"identifier": "10.3886/icpsr07896.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Two nationally representative cohorts—from the National Educational Longitudinal Study (NELS) and High School and Beyond (HSB)—were used to examine the effects of generation and duration of residence on students’ performance on standardized tests over a two-year period. In multivariate models, generational status predicts variation in students’ performance on baseline (sophomore) tests, with effects stronger for the later age cohort (NELS) than for the earlier age cohort (HSB). With regard to the trajectory of achievement, generational status has a greatly reduced role for both cohorts. The best predictors of the trajectory of achievement are not those that are based on nativity per se, but those that reflect the social environment experienced in the United States (i.e., ethnicity and family’s socioeconomic status).", "author": ["Glick Jennifer E.", "White Michael J.", "White, Michael J.", "Glick, Jennifer E."], "localIdentifier": [{"type": "doi", "id": "10.1353/dem.2003.0034"}], "id": "50|dedup_wf_001::d1643d535013ba46cdd1a5cde68a3b07", "relatedPublications": 0, "date": [""], "title": ["The Academic Trajectories of Immigrant Youths: Analysis Within and Across Cohorts"], "relatedDatasets": 7}
139
{"typology": "publication", "publisher": ["The EMBO journal"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3fa485e4703d465767eb5736e97f2b21", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=2249652&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::273c6bbaa8b20648ac12d141ac8a6e35", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=2249652&result=coding_release", "schema": "url"}}], "abstract": "None: Among the best characterized non-classical mouse major histocompatibility antigens are the Qa-2 molecules. These proteins can serve as targets for allogenic cytotoxic T cells and as signal transducing molecules. They are structurally similar to H-2 transplantation antigens in their N-terminal and beta 2-microglobulin binding domains but differ at their C-termini. While the H-2 antigens span the cell membrane, the Qa-2 molecules are attached to the cell surface via phospholipid anchors. The genetic information encoding this attachment is contained in exon 5. In concanavalin A activated splenocytes the expression of membrane bound Qa-2 antigens declines and, simultaneously, soluble forms of Qa-2 molecules are secreted. We demonstrate here that the soluble Qa-2 polypeptides are translated from alternatively spliced mRNAs lacking exon 5, while the membrane forms are encoded by the full-size transcripts. In cultured cells the alternative splicing of the Qa-2 message is induced by T-cell activation splicing of the Qa-2 message is induced by T-cell activation with concanavalin A. The canonical mRNA encoding the membrane form of Qa-2 predominates in unstimulated mouse tissues but the cultured cell lines, like activated T cells, express enhanced levels of the truncated mRNA. In some cell lines almost all Qa-2 transcripts lack exon 5. For example, in L cells, mRNAs encoding soluble Qa-2 molecules are at least 10 times more abundant than Qa-2 transcripts encoding phospholipid anchored antigens. These findings are discussed in terms of potential functions of membrane bound and secreted Qa-2 molecules.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "2249652"}], "author": ["Stroynowski I", "Lewis K D", "Hood L E", "Ulker N"], "relatedPublications": 0, "id": "50|r3d100010527::6e4e14038e6750fb40a8e47b0bb3f054", "title": ["Activated T cells transcribe an alternatively spliced mRNA encoding a soluble form of Qa-2 antigen."], "relatedDatasets": 2}
140
{"typology": "publication", "publisher": ["The Journal of biological chemistry"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::d8636839af0078124bed70ababa2abd4", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7961903&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::871d793472775ea99c0c49e621d04b83", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7961903&result=sequence_release", "schema": "url"}}], "abstract": "None: In order to facilitate structure-function studies of the glucagon receptor by site-directed mutagenesis, we have designed and synthesized a gene for the rat glucagon receptor. The gene codes for the native 485-amino-acid protein but contains 91 unique restriction sites. To characterize gene expression, a highly specific, high affinity antipeptide antibody was prepared against the receptor. The synthetic gene was expressed in transiently transfected monkey kidney (COS-1) cells. COS cells expressing the synthetic receptor gene bound glucagon with affinity and specificity similar to that of hepatocytes containing native receptor. The transfected COS cells also showed increased intracellular cAMP levels in response to glucagon. The functional role of an aspartic acid residue in the NH2-terminal tail of the receptor was tested by site-directed mutagenesis. This site in the related growth hormone releasing factor receptor was shown to be responsible for the little mouse (lit) genetic defect that results in mice of small size with hypoplastic pituitary glands. Mutant glucagon receptors with amino acid replacements of Asp64 were expressed at normal levels in COS cells but failed to bind glucagon. These results indicate that amino acid Asp64 may play a key role in glucagon binding to receptor.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "7961903"}], "author": ["Kim H N", "Sakmar T P", "Carruthers C J", "Unson C G"], "relatedPublications": 0, "id": "50|r3d100010527::0b0a00a85569a81624f6319a70a407c9", "title": ["Synthesis and expression of a gene for the rat glucagon receptor. Replacement of an aspartic acid in the extracellular domain prevents glucagon binding."], "relatedDatasets": 2}
141
{"typology": "publication", "publisher": ["Virology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 1, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6c1d24f42f250a425bc0ccdb87a65b32", "id": {"identifier": "eu785961", "schema": "genbank"}}, {"relationSemantic": "unknown", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dedup_wf_001::9ce37af140ea017e8383e14a6de801fb", "id": {"identifier": "k03455", "schema": "genbank"}}, {"relationSemantic": "unknown", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6d4c613c1f6307bea0460d3b89dc3799", "id": {"identifier": "eu785944", "schema": "genbank"}}, {"relationSemantic": "unknown", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::06b75d00bf46742dcdfb595039d78233", "id": {"identifier": "dq366661", "schema": "genbank"}}, {"relationSemantic": "unknown", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5ffda7c000559a971370a099556c8834", "id": {"identifier": "dq366659", "schema": "genbank"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::e45e75e00cced21070e812e27bdc8170", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=19272628&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::b2b897a51b27d60e8c440cade26a3759", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=19272628&result=sequence_release", "schema": "url"}}], "abstract": "None: HIV is capable of frequent genetic exchange through recombination. Despite the pandemic spread of HIV-1 recombinants, their times of origin are not well understood. We investigate the epidemic history of a HIV-1 circulating recombinant form (CRF) by estimating the time of the recombination event that lead to the emergence of CRF33_01B, a recently described recombinant descended from CRF01_AE and subtype B. The gag, pol and env genes were analyzed using a combined coalescent and relaxed molecular clock model, implemented in a Bayesian Markov chain Monte Carlo framework. Using linked genealogical trees we calculated the time interval between the common ancestor of CRF33_01B and the ancestors it shares with closely related parental lineages. The recombination event that generated CRF33_01B (t(rec)) occurred sometime between 1991 and 1993, suggesting that recombination is common in the early evolutionary history of HIV-1. The proof-of-concept approach provides a new tool for the investigation of HIV molecular epidemiology and evolution.", "author": ["Takebe Yutaka", "Ng Kee Peng", "Kamarulzaman Adeeba", "Parker Joe", "Tee Kok Keng", "Pybus Oliver G"], "localIdentifier": [{"type": "pbmid", "id": "19272628"}, {"type": "doi", "id": "10.1016/j.virol.2009.02.020"}], "id": "50|dedup_wf_001::4120e0f359522b1ddd3ecce3ea8af22d", "relatedPublications": 0, "date": ["2009"], "title": ["Estimating the date of origin of an HIV-1 circulating recombinant form"], "relatedDatasets": 8}
142
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::b7c7781e264170080bcb8923717d1669", "id": {"identifier": "10.3886/icpsr07629.v2", "schema": "url"}}], "abstract": "This paper uses time series data from Syria for the period 1965 to 1997 to test the aid and ¡°Dutch disease¡± hypothesis. We employ the relatively new approach to cointegration, known as the Auto Regressive Distributed Lag (ARDL) approach. We find no support for this hypothesis neither in the long run nor in the short run. On the contrary, our results indicate that foreign aid flows are associated with depreciation of the real exchange rate. The main policy implication, based on the long run results, is that Syria can continue to receive aid without fears of impairing its export competitiveness.", "author": ["Ouattara, B.", "Issa, H."], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:dedup_wf_001::97eaefda9fa992bb0b216027b5c6b906"}], "id": "50|dli_resolver::85a8446fe0eadf3d766e379449a3131f", "relatedPublications": 0, "date": [""], "title": ["FOREIGN AID FLOWS AND REAL EXCHANGE RATE: EVIDENCE FROM SYRIA"], "relatedDatasets": 1, "subject": [{"scheme": "keyword", "value": "jel:C32"}, {"scheme": "keyword", "value": "Aid Flows, Dutch Disease, Real Exchange Rate, Cointegration, Error Correction, Syria"}, {"scheme": "keyword", "value": "jel:F35"}]}
143
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::20873e4734d99adb1b152d5b5254d423", "id": {"identifier": "10.5517/cc118zjt", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title salt, (C6H14N)2[Sn(C2O4)Cl4], was obtained as a by-product from the reaction between 2C6H14N+·C2O42−·1.5H2O and SnCl2·2H2O. The cyclo­hexyl­ammonium cation has a chair conformation. The complex anion consists of an oxalate anion chelating the SnCl4 moiety, resulting in a distorted octa­hedral coordination sphere of the SnIV atom with the O atoms in equatorial cis positions. In the crystal, cations and anions are linked through N—H⋯O and N—H⋯Cl inter­actions into a layered arrangement parallel to (100).", "author": ["Sarr Modou", "Plasseraud Laurent", "Diasse-Sarr Aminata", "Diallo Waly", "Cattey Hélène"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536813019284"}], "id": "50|dli_resolver::3db3f0738332c2c12509114fca8cf43f", "relatedPublications": 0, "date": [""], "title": ["\"Bis(cyclohexylammonium) tetrachlorido(oxalato)stannate(IV)\""], "relatedDatasets": 1}
144
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::2f2057536f5291b70d7ee5be40d42a2e", "id": {"identifier": "10.3886/icpsr09681.v5", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Manton, Kenneth G.", "Dowd E."], "localIdentifier": [{"type": "icpsr", "id": "44186"}], "relatedPublications": 0, "title": ["Models for forecasting chronic disease processes in adult and elderly populations: Effects of stochasticity"], "id": "50|r3d100010255::e5d540a602d62172f1656ea6b3e9f9e0"}
145
{"typology": "publication", "publisher": ["Veterinary parasitology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::1bcc6026d4675f0d30e89c750f85214d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18819752&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::1991ccba18868375d3675a459c75089d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18819752&result=noncoding_release", "schema": "url"}}], "abstract": "None: A cross-sectional survey was conducted to estimate the prevalence of Echinococcus multilocularis and E. granulosus infections in domestic dogs and cats from Germany and other European countries. Faecal samples of 21,588 dogs and 10,650 cats routinely submitted to a private veterinary laboratory between June 2004 and June 2005 were examined using the ZnSO(4)-NaCl flotation method. Taeniid eggs were detected in 54 (0.25%) and 37 (0.34%) of the canine and feline faecal samples, respectively. Taeniid eggs were separated and subjected to a DNA preparation and a modified two-step PCR for the detection of Echinococcus spp. based on mitochondrial 12S rRNA genes. PCR products from Echinococcus-negative but cestode-positive reactions were cloned and sequenced to determine the Taenia species. E. multilocularis DNA was specifically amplified in 43 (0.24%) and 25 (0.23%) of the samples from dogs and cats, respectively. E. granulosus DNA was not detected in any sample, while, E. multilocularis-positive samples were detected in dogs from Germany only, those of cats originated from Germany, Denmark and The Netherlands. The prevalence of E. multilocularis egg-positive canine samples was significantly higher in southern (0.35%) than in northern Germany (0.13%). In contrast, no significant regional difference was observed in cats from Germany. Taeniid eggs from Echinococcus-negative samples and from a few samples with macroscopically detected Taenia sp. proglottids were identified as eggs of T. crassiceps (n=8), T. martis, T. serialis, T. polyacantha, T. taeniaeformis and T. pisiformis in dogs (n=1 of each) and T. taeniaeformis (n=11) in cats. The spectrum of cestodes detected in domestic dogs and cats indicate the consumption of small rodents as infection source. The high proportion of E. multilocularis-positive samples, suggest domestic dogs and cats as a possible source of E. multilocularis infection for humans.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1016/j.vetpar.2008.07.030"}, {"type": "pbmid", "id": "18819752"}], "author": ["Pantchev Nikola", "Bauer Christian", "Gawlowska Sandra", "Vrhovec Majda Globokar", "Dyachenko Viktor"], "relatedPublications": 0, "id": "50|r3d100010527::bc84da0704e5ed795ecf99e2c1002f13", "title": ["Echinococcus multilocularis infections in domestic dogs and cats from Germany and other European countries."], "relatedDatasets": 2}
146
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::7619ac01bb59f024ffaef358170b7b5c", "id": {"identifier": "10.17632/bn5nb2r3g5.1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Delefortrie Samuël", "De Smedt Philippe", "Hanssens Daan"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jappgeo.2018.03.003"}], "id": "50|dli_resolver::cb885658e43c11dad570689921ee11d3", "relatedPublications": 0, "date": [""], "title": ["Low signal-to-noise FDEM in-phase data: Practical potential for magnetic susceptibility modelling"], "relatedDatasets": 1}
147
{"typology": "publication", "publisher": ["Japan Society for Analytical Chemistry"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0a256b8d02e8faedd9f201cf0919fe58", "id": {"identifier": "10.5517/ccnxydw", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title compound, (C26H23N)3·CHCl3, was synthesized by the reaction of trityl bromide with m-toluidine in chloroform and crystalized in the trigonal R3 space group (Z = 6) with the one molecule of chloroform, and with a = 20.765(5), b = 20.765(5), c = 24.924(5)A, α = β = 90°, γ = 120°, V = 9307(4)A3, Z = 6 and Dx = 1.250 Mg m-3. A least-squares refinement gave a residual index of R = 0.065 for 3540 observed reflections. Three phenyl rings of the title compound are at angles of 60.39(13), 74.10(14) and 70.17(13)° to the six-membered ring of the planar aminophenol group. The dihedral angles between three phenyl rings are 73.60(16), 87.80(15) and 56.52(15)°.", "author": ["Demirtas, I.", "Çelik, I.", "Ersanli, C. C.", "Akkurt, M."], "localIdentifier": [{"type": "doi", "id": "10.2116/analscix.23.x231"}], "id": "50|dli_resolver::b09dca239796c03f32686b8570c07e15", "relatedPublications": 0, "date": [""], "title": ["\"Crystal and Molecular Structure of N-Trityl-m-aminophenol Chloroform Solvate\""], "relatedDatasets": 1}
148
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6bcaf65b473abfc9877554f41315eb09", "id": {"identifier": "10.5517/ccdc.csd.cc10vyxq", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c1e7c4dcfec3464284aa0ea6fb04ce8d", "id": {"identifier": "10.5517/ccdc.csd.cczwr7t", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::14930b08f59d0eac6c908027f107f7a7", "id": {"identifier": "10.5517/ccqtw9p", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The reactions of potassium salts of the dithiocarbamates L {where L = pyrazolyldithiocarbamate (L1), 3,5-dimethylpyrazolyldithiocarbamate (L2), or indazolyldithiocarbamate (L3)} with the gold precursors [AuCl(PPh3)], [Au2Cl2(dppe)], [Au2Cl2(dppp)], or [Au2Cl2(dpph)] lead to the new gold(I) complexes [AuL(PPh3)] (1–3), [Au2L2(dppe)] (4–6), [(Au2L2)(dppp)] (7–9), and [Au2(L)2(dpph)] (10–12) {where dppe = 1,2-bis(diphenylphosphino)ethane, dppp = 1,3-bis(diphenylphosphino)propane, and dpph = 1,6-bis(diphenylphosphino)hexane}. These gold compounds were characterized by a combination of NMR and infrared spectroscopy, microanalysis, and mass spectrometry; and in selected cases by single-crystal X-ray crystallography. Compounds 4–6, which have dppe ligands, are unstable in solution for prolonged periods, with 4 readily transforming to the Au18 cluster [Au18S8(dppe)6]Cl2 (4a) in dichloromethane. Compounds 1–3 and 7–12 are all active against human cervical epithelioid carcinoma (HeLa) cells, but the most active compounds are 10 and 11, with IC50 values of 0.51 μM and 0.14 μM, respectively. Compounds 10 and 11 are more selective toward HeLa cells than they are toward normal cells, with selectivities of 25.0 and 70.5, respectively. Further tests, utilizing the 60-cell-line Developmental Therapeutics Program at the National Cancer Institute (U.S.A.), showed 10 and 11 to be active against nine other types of cancers.", "author": ["Keter Frankline K.", "Guzei Ilia A.", "Zyl Werner E. van", "Nell Margo", "Darkwa James"], "localIdentifier": [{"type": "doi", "id": "10.1021/ic4025926"}], "id": "50|dli_resolver::ac161608ad4d90ecd36cb51d37f063c0", "relatedPublications": 0, "date": [""], "title": ["\"Phosphinogold(I) Dithiocarbamate Complexes: Effect of the Nature of Phosphine Ligand on Anticancer Properties\""], "relatedDatasets": 3}
149
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::6d10eaa66fa48ddbf32a5d3602963fd9", "id": {"identifier": "4a17", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::f2ab5ab40d20841d922abba141221041", "id": {"identifier": "1hr0", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::c1d3d567bfc8184981cdf22368da8b2b", "id": {"identifier": "3v11", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::e92ba293795bde0c9e05c7cf6b222dd2", "id": {"identifier": "1zo3", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::c09d75f11e935aa693c972e0dcbcc652", "id": {"identifier": "2wdl", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::516e7f56e44e363225d4e1c097bee11a", "id": {"identifier": "2wrn", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::69accb8951d003424f31db9f8ddde5e7", "id": {"identifier": "1zo1", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::247584e7ed9ae06d7361df9ee8019317", "id": {"identifier": "3u5e", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::ba19ee2ceb6e375ea038001b33c8ba60", "id": {"identifier": "2ful", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::374dc2d306dd185879c34aba95a45e4f", "id": {"identifier": "2qmu", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::9c11d86c0921ab5787ef17719991c8dc", "id": {"identifier": "2xzm", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::be04a63522864749612c24c365edb8dc", "id": {"identifier": "2wdk", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::a2ea81c2e3ea9d53476e5e8156f19fea", "id": {"identifier": "3u5d", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::08723056f7f970f32ed767f94a3beb42", "id": {"identifier": "1d7q", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::d4d48ea71d984dbe00ebeb8925ebeaae", "id": {"identifier": "4a19", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::7340c3c138330caf0f721aca150bb55c", "id": {"identifier": "1b23", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::7575213cd3a38048b897eeef1b68dbfd", "id": {"identifier": "3u5b", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::c27a47091abb5624722219c4dd56e47d", "id": {"identifier": "1g7s", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::5e4c7b53bf9486a96abdf54006506e80", "id": {"identifier": "1g7t", "schema": "pdb"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "RCSB", "dnetId": "60|dli_resolver::594aa9f28e220b86680eff1a3d7a3a88", "id": {"identifier": "3u5c", "schema": "pdb"}}], "abstract": "", "title": ["Structural insights into eukaryotic ribosomes and the initiation of translation"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.sbi.2012.07.010"}], "id": "50|elsevier____::88d3ddbcb9eede356c9b39681c17a8b0", "relatedPublications": 0, "date": ["2012"], "relatedDatasets": 37}
150
{"typology": "publication", "publisher": ["Magnolia Press"], "doiRels": [{"relationSemantic": "isNewVersionOf", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b4e82ff0c3e39249d4cb71e9159ac501", "id": {"identifier": "10.15468/l0gr8q", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6add033605b55f3c1d832f93725233b7", "id": {"identifier": "10.5281/zenodo.227141", "schema": "doi"}}, {"relationSemantic": "isNewVersionOf", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::04e82db37b1f4ea5f7b2ecb855ecbade", "id": {"identifier": "10.15468/yz9pub", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e6799af468771bf50fb31dfdda9637b5", "id": {"identifier": "10.5281/zenodo.227144", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2d2265646e7d4917eabcd605940ae338", "id": {"identifier": "10.5281/zenodo.227145", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::22781e3149bc36a5ecb42ce90efb79f6", "id": {"identifier": "10.5281/zenodo.227143", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::10bc65fe6b414972beabf2a6766e6137", "id": {"identifier": "10.5281/zenodo.227142", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["WANG YING-YONG", "TAKEUCHI HIROHIKO", "ZHU GUANG-XIANG", "ZHAO ER-MI"], "localIdentifier": [{"type": "doi", "id": "10.11646/zootaxa.3765.5.5"}], "id": "50|dli_resolver::d5eedd3b3d32efadc7c5f7d81d57f8dd", "relatedPublications": 0, "date": [""], "title": ["<strong>A new species of the genus <em>Rhabdophis</em> Fitzinger, 1843 (Squamata: Colubridae) from Guangdong Province, southern China</strong>"], "relatedDatasets": 12}
151
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::2adaf300b213f69b36f732e2edc751e3", "id": {"identifier": "u00735", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::04e2a5b6fe9687de7956e575a456f931", "id": {"identifier": "ay597011", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::72f2a53063666509f4071d4b1bd4fc02", "id": {"identifier": "ay700211", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::8b46e3a26b54953d349cab3c77bdf119", "id": {"identifier": "aj311317", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::50190517cbb136b18ebcded883fb35ab", "id": {"identifier": "ay278741", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::63d935c5dfd0f0b55e8db436b7a40e2d", "id": {"identifier": "aj271965", "schema": "ena"}}], "abstract": "", "author": ["Lili Kuo", "Masters, Paul S."], "localIdentifier": [{"type": "pmid", "id": "23449786"}], "id": "50|pubmed______::7fef245f009edbff23763f8e19665e48", "relatedPublications": 0, "date": ["2013-02-28"], "title": ["Functional analysis of the murine coronavirus genomic RNA packaging signal."], "relatedDatasets": 6}
152
{"typology": "publication", "publisher": ["The ISME journal"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::1f3223eb42a3a63f836f04d8832d96d5", "id": {"identifier": "kc603770", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c96728bcb460e75d31fdd95a0aec6cb8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24152713&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ede1f1a384ea3ce3d4ccc6d8b2919260", "id": {"identifier": "kc603846", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::1552e438620db3d674fb118351fe1483", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24152713&result=coding_release", "schema": "url"}}], "abstract": "None: Molecular fossils of 2-methylhopanoids are prominent biomarkers in modern and ancient sediments that have been used as proxies for cyanobacteria and their main metabolism, oxygenic photosynthesis. However, substantial culture and genomic-based evidence now indicates that organisms other than cyanobacteria can make 2-methylhopanoids. Because few data directly address which organisms produce 2-methylhopanoids in the environment, we used metagenomic and clone library methods to determine the environmental diversity of hpnP, the gene encoding the C-2 hopanoid methylase. Here we show that hpnP copies from alphaproteobacteria and as yet uncultured organisms are found in diverse modern environments, including some modern habitats representative of those preserved in the rock record. In contrast, cyanobacterial hpnP genes are rarer and tend to be localized to specific habitats. To move beyond understanding the taxonomic distribution of environmental 2-methylhopanoid producers, we asked whether hpnP presence might track with particular variables. We found hpnP to be significantly correlated with organisms, metabolisms and environments known to support plant-microbe interactions (P-value<10(-6)); in addition, we observed diverse hpnP types in closely packed microbial communities from other environments, including stromatolites, hot springs and hypersaline microbial mats. The common features of these niches indicate that 2-methylhopanoids are enriched in sessile microbial communities inhabiting environments low in oxygen and fixed nitrogen with high osmolarity. Our results support the earlier conclusion that 2-methylhopanoids are not reliable biomarkers for cyanobacteria or any other taxonomic group, and raise the new hypothesis that, instead, they are indicators of a specific environmental niche.", "author": ["Welander, Paula V.", "Summons Roger E", "Newman, Dianne K.", "Coleman Maureen L", "Ricci, Jessica N.", "Newman Dianne K", "Spear John R", "Welander Paula V", "Coleman, Maureen L.", "Ricci Jessica N", "Sessions Alex L", "Summons, Roger E.", "Sessions, Alex L.", "Spear, John R."], "localIdentifier": [{"type": "doi", "id": "10.1038/ismej.2013.191"}, {"type": "pbmid", "id": "24152713"}, {"type": "pmid", "id": "24152713"}], "id": "50|dedup_wf_001::3bab3b936a01432d94e2a96d6502b611", "relatedPublications": 0, "date": ["2013-10-24"], "title": ["Diverse capacity for 2-methylhopanoid production correlates with a specific ecological niche."], "relatedDatasets": 4}
153
{"typology": "publication", "publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e72ea3bc65ce5f012b644bf4735ad243", "id": {"identifier": "10.6084/m9.figshare.c.2087759", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::684e4d7bce8bd7ca3f03eb2a6a21c6b4", "id": {"identifier": "10.6084/m9.figshare.1477985", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::5f7edcb42050d60b2e2651182dd5fcfb", "id": {"identifier": "10.6084/m9.figshare.c.2087759.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "AbstractThe crude extract of an endophytic fungus isolated from Syzygium cordatum and identified as Fusarium proliferatum showed 100% cytotoxicity against the brine shrimp Artemia salina at 100 μg/mL. Seven coloured, biologically active metabolites – including ergosta-5,7,22-trien-3β-ol, nectriafurone-8-methyl ether, 9-O-methyl fusarubin, bostrycoidin, bostrycoidin-9-methyl ether and 8-hydroxy-5,6-dimethoxy-2-methyl-3-(2-oxo-propyl)-1,4-naphthoquinone– were isolated from the extract.", "author": ["van Ree Teunis", "Silima Beauty", "Gryzenhout Marieka", "Dame Zerihun T."], "localIdentifier": [{"type": "doi", "id": "10.1080/14786419.2015.1053089"}], "id": "50|dli_resolver::997dd0e748d5238daa260877c2924ab3", "relatedPublications": 0, "date": [""], "title": ["\"Bioactive compounds from the endophytic fungusFusarium proliferatum\""], "relatedDatasets": 3}
154
{"typology": "publication", "publisher": ["Zoological science"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::2688cb8a4607faad036fdd50716b4961", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=12499674&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f17186c3686906d12807a91eba73a989", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=12499674&result=noncoding_release", "schema": "url"}}], "abstract": "None: Phylogenetic relationships of the genus Cuora sensu lato (Cuora sensu stricto and Cistoclemmys) and other testudinoid genera were inferred from variations in 882 base positions of mitochondrial 12S and 16S rRNA genes. Results yielded a robust support to the monophyly of a group (Cuora group) consisting of Cuora sensu lato and the monotypic Pyxidea. Within the Cuora group, the continental Cuora (sensu stricto) and the two subspecies of Ci. flavomarginata constituted two well-supported monophyletic groups. Distinctly small interspecific genetic distances in the former groups suggested that in the continent speciations in Cuora took place much later than the primary divergences in the Cuora group, or speciations in other related genera, such as Mauremys. Our analyses failed to provide a substantial support to the monophyly of any other combinations of taxa within the Cuora group, including Cuora in broad and strict senses, and Cistoclemmys as consisting of Ci. galbinifrons and Ci. flavomarginata. Besides these, our results also suggested the non-monophyly for the Batagurinae and the Geoemydinae, and sister relationships of the Bataguridae with Testudinidae rather than with the Emydidae.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "12499674"}], "author": ["Hirayama Ren", "Yasukawa Yuichirou", "Ota Hidetoshi", "Honda Masanao"], "relatedPublications": 0, "id": "50|r3d100010527::5bc72126a343d629859d05fc1f682d98", "title": ["Phylogenetic relationships of the Asian box turtles of the genus Cuora sensu lato (Reptilia: Bataguridae) inferred from mitochondrial DNA sequences."], "relatedDatasets": 2}
155
{"typology": "publication", "publisher": ["Systematic and applied microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::106dadb729643544d53b6508598ef46d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26597454&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c1c95373e6cb06fb2b5eb0fa653c35e6", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26597454&result=read_study", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c205ea4ce22b71fe40378daa8066af2b", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=26597454&result=noncoding_release", "schema": "url"}}], "abstract": "None: Three strains, namely L3B39(T), L3D16, and L1E9, were obtained while studying the cultivable rhizosphere bacteria of saline tolerant pokkali rice, at Kerala, India. The novel strains were negative for many plant growth promoting plate assays such as phytohormone and siderophore production, 1-aminocyclopropane-1-carboxylate (ACC) deaminase and growth in nitrogen free agar medium but found to utilize malic acid, citrate, D-glucose, L-arabinose, and D-maltose, important components of the plant root exudates, indicating that they are normal plant rhizosphere residents without yet known benefits to the plant. The 16S rRNA gene analysis placed these strains in the genus Vogesella, forming a separate branch independent of the previously described type strains of this genus in all tree making algorithms applied. Vogesella perlucida DS-28(T) was the type strain with highest 16S rRNA sequence similarity (97.59%). DNA-DNA hybridization values among these novel strains were above 85% andthat with Vogesella perlucida LMG 24214(T) was below 50%. Phenotypically, the novel strains can be differentiated from Vogesella perlucida LMG 24214(T) by many characters such as NaCl tolerance, growth temperature, and utilization of L-arabinose, D-maltose, and citrate. These novel strains contain C16:1ω6c/C16:1ω7c and C16:0 as major fatty acids, ubiquinone Q-8 as the major respiratory quinone, and phosphatidylethanolamine and phosphatidylglycerol as major polar lipids. Based on the results obtained from the polyphasic taxonomic approach we conclude that the strains belong to a novel Vogesella species for which the name Vogesella oryzae sp.nov. is proposed. The type strain is L3B39(T) (= LMG 28272(T)=DSM 28780(T)).", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "26597454"}, {"type": "doi", "id": "10.1016/j.syapm.2015.10.003"}], "author": ["Tanaka Naoto", "Lang Elke", "Rameshkumar N"], "relatedPublications": 0, "id": "50|r3d100010527::292e289c9dc70304aae78e49d2b4c7dc", "title": ["Description of Vogesella oryzae sp. nov., isolated from the rhizosphere of saline tolerant pokkali rice."], "relatedDatasets": 3}
156
{"typology": "publication", "publisher": ["Development (Cambridge, England)"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::122636894729c702b8902b34517ad047", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=15229173&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::bb20282383d45c3dacf98c9739637b67", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=15229173&result=coding_release", "schema": "url"}}], "abstract": "None: STYLOSA (STY) in Antirrhinum and LEUNIG (LUG) in Arabidopsis control the spatially correct expression of homeotic functions involved in the control of floral organ identity. We show here that the sty mutant also displays alteration in leaf venation patterns and hypersensitivity towards auxin and polar auxin transport inhibitors, demonstrating that STY has a more general role in plant development. STY and LUG are shown to be orthologues that encode proteins with structural relation to GRO/TUP1-like co-repressors. Using a yeast-based screen we found that STY interacts with several transcription factors, suggesting that STY, like GRO/TUP1, forms complexes in vivo. Proteins of the YABBY family, characterised by containing a partial HMG domain, represent a major group of such interactors. In vivo association of STY with one of the YABBY proteins, GRAMINIFOLIA (GRAM), is supported by enhanced phenotypic defects in sty gram double mutants, for instance in the control of phyllotaxis, floral homeotic functions and organ polarity. Accordingly, the STY and GRAM protein and mRNA expression patterns overlap in emerging lateral organ primordia. STY is expressed in all meristems and later becomes confined to the adaxial domain and (pro)vascular tissue. This pattern is similar to genes that promote adaxial identity, and, indeed, STY expression follows, although does not control, adaxial fate. We discuss the complex roles of STY and GRAM proteins in reproductive and vegetative development, performed in part in physical association but also independently.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "15229173"}], "author": ["Efremova Nadia", "Golz John F", "Castillo Rosa", "Schwarz-Sommer Zsuzsanna", "Saedler Heinz", "Tietz Olaf", "Rubiera Roger", "Navarro Cristina", "Kuckenberg Markus"], "relatedPublications": 0, "id": "50|r3d100010527::4b40749328c00c44edb0075fe5eac7f4", "title": ["Molecular and genetic interactions between STYLOSA and GRAMINIFOLIA in the control of Antirrhinum vegetative and reproductive development."], "relatedDatasets": 2}
157
{"typology": "publication", "publisher": ["Fungal genetics and biology : FG & B"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::9988b1c930b58b453ce291ab8196d25a", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9344631&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::b577b34e557c7ff045d753c23484078f", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9344631&result=coding_release", "schema": "url"}}], "abstract": "None: A protein with characteristic properties of a fungal hydrophobin (CoH1) was isolated from the monokaryotic stage of the basidiomycete Coprinus cinereus. A cosmid clone containing the corresponding gene (coH1) was identified using a cDNA probe derived by RT-PCR. Hybridization and sequence analysis identified a second gene, coH2, just 4.1 kb downstream of coH1 encoding a hydrophobin (CoH2) with 64% sequence identity. Both coH1 and coH2 are subject to developmental regulation. They are expressed in vegetative monokaryotic cells but not in the asexual oidia produced on the surface of monokaryons. Transcripts of the genes were barely detected in dikaryotic mycelium and were absent from fruit bodies. Loss of aerial growth due to a mutation known as oid-1 was correlated with lack of both hydrophobins.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9344631"}], "author": ["Casselton L A", "Halsall J R", "Asgeirsdóttir S A"], "relatedPublications": 0, "id": "50|r3d100010527::72d735bde4d8327fa6b0e606e46d0131", "title": ["Expression of two closely linked hydrophobin genes of Coprinus cinereus is monokaryon-specific and down-regulated by the oid-1 mutation."], "relatedDatasets": 2}
158
{"typology": "publication", "publisher": ["Springer Nature", "BMC genomics"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::e1f6f916125506c26c91f1884083460d", "id": {"identifier": "10.6084/m9.figshare.c.3665659.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::b8ac129561596c9d158972857a422334", "id": {"identifier": "10.6084/m9.figshare.c.3665659_d1.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::04f7bd63de8f3d61886d54fd1da063f9", "id": {"identifier": "10.6084/m9.figshare.c.3665659", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::ab015a1e28b6d5439c8aac94f2c3f008", "id": {"identifier": "10.6084/m9.figshare.c.3665659_d2.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5aaca47ed9ea2793fdb96cb87dc781e7", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=28086791&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::76fa4b4f8f479b4109280a2f0ad3edab", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=28086791&result=study", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::99f9e5ac8b925d7fa9d0dedff28a15a3", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=28086791&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::cd182272c1a4bf0102df32d8ab265677", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=28086791&result=read_study", "schema": "url"}}], "abstract": "BACKGROUND: Various insect species have been added to genomic databases over the years. Thus, researchers can easily obtain online genomic information on invertebrates and insects. However, many incorrectly annotated genes are included in these databases, which can prevent the correct interpretation of subsequent functional analyses. To address this problem, we used a combination of dry and wet bench processes to select functional genes from public databases. RESULTS: Enolase is an important glycolytic enzyme in all organisms. We used a combination of dry and wet bench processes to identify functional enolases in the silkworm Bombyx mori (BmEno). First, we detected five annotated enolases from public databases using a Hidden Markov Model (HMM) search, and then through cDNA cloning, Northern blotting, and RNA-seq analysis, we revealed three functional enolases in B. mori: BmEno1, BmEno2, and BmEnoC. BmEno1 contained a conserved key amino acid residue for metal binding and substrate binding in other species. However, BmEno2 and BmEnoC showed a change in this key amino acid. Phylogenetic analysis showed that BmEno2 and BmEnoC were distinct from BmEno1 and other enolases, and were distributed only in lepidopteran clusters. BmEno1 was expressed in all of the tissues used in our study. In contrast, BmEno2 was mainly expressed in the testis with some expression in the ovary and suboesophageal ganglion. BmEnoC was weakly expressed in the testis. Quantitative RT-PCR showed that the mRNA expression of BmEno2 and BmEnoC correlated with testis development; thus, BmEno2 and BmEnoC may be related to lepidopteran-specific spermiogenesis. CONCLUSIONS: We identified and characterized three functional enolases from public databases with a combination of dry and wet bench processes in the silkworm B. mori. In addition, we determined that BmEno2 and BmEnoC had species-specific functions. Our strategy could be helpful for the detection of minor genes and functional genes in non-model organisms from public databases.", "author": ["Toyoda Atsushi", "Nojima Yosui", "Bono Hidemasa", "Iwabuchi Kikuo", "Tabunoki Hiroko", "Fujiyama Asao", "Ito Katsuhiko", "Yokoyama Takeshi", "Nakazato Takeru", "Sato Ryoichi", "Kikuchi Akira"], "localIdentifier": [{"type": "doi", "id": "10.1186/s12864-016-3455-y"}, {"type": "pbmid", "id": "28086791"}], "id": "50|dedup_wf_001::cff9e29b6d76ae70ce1e5f94267b9f5c", "relatedPublications": 0, "date": [""], "title": ["Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes."], "relatedDatasets": 8}
159
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::92b49c81751763bf9e4f153a5514721f", "id": {"identifier": "10.6084/m9.figshare.c.3614948_d1.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::38c60f6bdb88b3a2db797312204b89bb", "id": {"identifier": "10.6084/m9.figshare.c.3614948", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::b05a24fb04acc876234088870670d8f9", "id": {"identifier": "10.6084/m9.figshare.c.3614948.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::3a388b854152204020da4a98b12ac8a9", "id": {"identifier": "10.6084/m9.figshare.c.3614948_d2.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Background#R##N#Hereditary spastic paraplegias (HSP), a group of genetically heterogeneous neurological disorders with more than 56 documented loci (SPG1-56), are described either as uncomplicated (or pure), or complicated where in addition to spasticity and weakness of lower extremeties, additional neurological symptoms are present, including dementia, loss of vision, epilepsy, mental retardation and ichthyosis. We identified a large consanguineous family of Indian descent with four affected members with childhood onset HSP (SPG54), presenting with upper and lower limb spasticity, mental retardation and agenesis of the corpus callosum.", "author": ["Alrayes Nuha", "Jelani Musharraf", "Nasir Jamal", "Ahmad Saleem", "Bakur Khadijah", "Mohamoud Hussein Sheikh Ali", "Vadgama Nirmal", "Al-Aama Jumana Yousuf", "Simpson Michael"], "localIdentifier": [{"type": "doi", "id": "10.1186/s13104-015-1227-4"}], "id": "50|dli_resolver::796acc5147132a12f8438edfb65cfcac", "relatedPublications": 0, "date": [""], "title": ["\"Truncating mutation in intracellular phospholipase A1 gene (DDHD2) in hereditary spastic paraplegia with intellectual disability (SPG54)\""], "relatedDatasets": 4}
160
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::986814b63f3d21d310bc6e2c74bbf4dc", "id": {"identifier": "aa393017", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5b77fccdb186a283e60422136c4584e5", "id": {"identifier": "aa142215", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6fd5ad17883aa0d1879271426f0ccfd6", "id": {"identifier": "aa263279", "schema": "ena"}}], "abstract": "", "author": ["Frand, A. R.", "Kaiser, C. A.", "Chen, E. J.", "Chitouras, E."], "localIdentifier": [{"type": "pmid", "id": "9819400"}], "id": "50|pubmed______::7fd3b1ea495758049f00c391f716481f", "relatedPublications": 0, "date": ["1998-12-01"], "title": ["A link between secretion and pre-mRNA processing defects in Saccharomyces cerevisiae and the identification of a novel splicing gene, RSE1."], "relatedDatasets": 3}
161
{"typology": "publication", "publisher": ["Oxford University Press (OUP)"], "doiRels": [{"relationSemantic": "isCitedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::20f35396b28d0c295c70f8e13814752e", "id": {"identifier": "10.5281/zenodo.259007", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Crespi Bernie", "Simon Chris", "Beckenbach Andrew", "Flook Paul", "Liu Hong", "Frati Francesco"], "localIdentifier": [{"type": "doi", "id": "10.1093/aesa/87.6.651"}], "id": "50|dli_resolver::015ef76247c7ab3c346a5c6b8980fd70", "relatedPublications": 0, "date": [""], "title": ["Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers"], "relatedDatasets": 1}
162
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::1f2e601245c372d49aaa38df63a512e5", "id": {"identifier": "2liw", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::3373439e0aed6ef73c07f3e0fd775153", "id": {"identifier": "2liu", "schema": "pdb"}}], "abstract": "Polyketide synthases (PKS) and non-ribosomal peptide synthetases (NRPS) are large multidomain proteins present in microorganisms that produce bioactive compounds. Curacin A is such a bioactive compound with potent anti-proliferative activity. During its biosynthesis the growing substrate is bound covalently to an acyl carrier protein (ACP) that is able to access catalytic sites of neighboring domains for chain elongation and modification. While ACP domains usually occur as monomers, the curacin A cluster codes for a triplet ACP (ACPI-ACPII-ACPIII) within the CurA PKS module. We have determined the structure of the isolated holo ACPI and show that the ACPs are independent of each other within this tri-domain system. In addition, we have determined the structure of the 3-hydroxyl-3-methylglutaryl-loaded holo-ACPI, which is the substrate for the unique halogenase (Hal) domain embedded within the CurA module. We have identified the interaction surface of both proteins using mutagenesis and MALDI-based identification of product formation. Amino acids affecting product formation are located on helices II and III of ACPI and form a contiguous surface. Since the CurA Hal accepts substrate only when presented by one of the ACPs within the ACPI-ACPII-ACPIII tri-domain, our data provide insight into the specificity of the chlorination reaction.", "author": ["Dötsch Volker", "Tufar Peter", "Pader Irina", "Gottstein Daniel", "Walsh Christopher T.", "Güntert Peter", "Busche Alena", "Ripin Nina", "Sherman David H.", "Gu Liangcai", "Eisman Eli B.", "Hein Christopher", "Löhr Frank"], "localIdentifier": [{"type": "doi", "id": "10.1021/cb200352q"}], "id": "50|dli_resolver::8aa85a0e7bc8c31b3a4df7ea8ec56d86", "relatedPublications": 0, "date": [""], "title": ["\"Characterization of Molecular Interactions between ACP and Halogenase Domains in the Curacin A Polyketide Synthase\""], "relatedDatasets": 2}
163
{"typology": "publication", "publisher": ["Anaerobe"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::e0ea8178d893985726fafe694ddb18bd", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16701516&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::4d2bda1c52382b31264bbb52e0659140", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16701516&result=noncoding_release", "schema": "url"}}], "abstract": "None: Seven obligately anaerobic, Gram-positive, rod-shaped, spore-forming organisms isolated from human faecal specimens were characterized using phenotypic and molecular taxonomic methods. Strains of the unidentified bacterium used carbohydrates as fermentable substrates, producing acetic acid, isovaleric acid and phenylacetic acid (PAA) as the major products of glucose metabolism, and possessed a G +C content of approximately 29.8 mol%. Comparative 16S rRNA gene sequencing showed that the 7 strains were genetically highly related to each other (displaying >99.5% sequence similarity) and represent a previously unknown sub-line within the Clostridium Cluster XI. The closest described species to the novel bacterium is Clostridium glycolicum, although a 16S rRNA sequence divergence of 4% demonstrates that they represent different species. Genomic DNA-DNA pairing studies confirmed the separateness of the unknown species and C. glycolicum (30.6% similarity between the proposed type strain of the novel species, WAL 16138, and C. glycolicum ATCC 14880(T)). Based on morphologic, phenotypic and phylogenetic evidence, it is therefore proposed that the unknown bacterium be classified as C. bartlettii sp. nov. The type strain of C. bartlettii is WAL 16138(T) (= ATCCBAA-827(T)=CCUG48940(T)).", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "16701516"}], "author": ["Finegold S M", "McTeague M", "Liu C X", "Summanen P", "Song Y L"], "relatedPublications": 0, "id": "50|r3d100010527::9d0769cf0d3968a5a692a9d36e2645b2", "title": ["Clostridium bartlettii sp. nov., isolated from human faeces."], "relatedDatasets": 2}
164
{"typology": "publication", "publisher": ["Proceedings of the National Academy of Sciences of the United States of America"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::77c6f4a0c85fcafe067ed49ff8ea8d1a", "id": {"identifier": "ef591979", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::45614078097a2ae6fe6572443bd3c638", "id": {"identifier": "dq415957", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::2052f4f8337679bf93e86121ebd61cb8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18268319&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::2f17556d64145fb85020967d86c361ca", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18268319&result=sequence_release", "schema": "url"}}], "abstract": "None: Vascular dysfunction has been reported in human cases of anthrax, in mammalian models of Bacillus anthracis, and in animals injected with anthrax toxin proteins. To examine anthrax lethal toxin effects on intact blood vessels, we developed a zebrafish model that permits in vivo imaging and evaluation of vasculature and cardiovascular function. Vascular defects monitored in hundreds of embryos enabled us to define four stages of phenotypic progression leading to circulatory dysfunction. We demonstrated increased endothelial permeability as an early consequence of toxin action by tracking the extravasation of fluorescent microspheres in toxin-injected embryos. Lethal toxin did not induce a significant amount of cell death in embryonic tissues or blood vessels, as shown by staining with acridine orange, and endothelial cells in lethal toxin-injected embryos continued to divide at the normal rate. Vascular permeability is strongly affected by the VEGF/vascular permeability factor (VPF) signaling pathway, and we were able to attenuate anthrax lethal toxin effects with chemical inhibitors of VEGFR function. Our study demonstrates the importance of vascular permeability in anthrax lethal toxin action and the need for further investigation of the cardiovascular component of human anthrax disease.", "author": ["Barker Adam P", "Zeller René", "Bolcome, Robert E.", "Joanne Chan", "John, Collier R.", "Bolcome Robert E", "Barker, Adam P.", "Sullivan, Sarah E.", "René Zeller", "Sullivan Sarah E", "John Collier, R.", "Chan Joanne"], "localIdentifier": [{"type": "pbmid", "id": "18268319"}, {"type": "pmid", "id": "18268319"}, {"type": "doi", "id": "10.1073/pnas.0712195105"}], "id": "50|dedup_wf_001::55c1e43492559752d3dad17ba7c6e9a4", "relatedPublications": 0, "date": ["2008-02-11"], "title": ["Anthrax lethal toxin induces cell death-independent permeability in zebrafish vasculature."], "relatedDatasets": 4}
165
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1ca60335a5896a38408273fc8a9bfe30", "id": {"identifier": "10.5517/cc56z2d", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The reaction of cobalt nitrate hexahydrate with 4,4 ′ -bipyridine (BPY) under hydrothermal conditions produced a new cationic pocket-like coordination polymer built by mixed double-hydrogen-bonded and coordinated 4,4 ′ -bipyridine rectangular-grid with inclusion species, and this material has been fabricated into metal–organic nanofibers by electrospinning.", "author": ["Abboud Khalil A.", "Ison Ana", "Norman Christine", "Lu Jack Y."], "localIdentifier": [{"type": "doi", "id": "10.1016/s1387-7003(01)00248-9"}], "id": "50|dli_resolver::55fdf2d6c912d45a390195e0a76d0af2", "relatedPublications": 0, "date": [""], "title": ["\"Crystal engineering of an inclusion coordination polymer with cationic pocket-like structure and its property to form metal–organic nanofibers\""], "relatedDatasets": 1}
166
{"typology": "publication", "publisher": ["Genomics"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3f8efc1c74f4c5204ccf053e9b1a41c3", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=11350117&result=sequence_release", "schema": "url"}}], "abstract": "None: Human rDNA forms arrays on five chromosome pairs and is homogenized by concerted evolution through recombination and gene conversion (loci RNR1, RNR2, RNR3, RNR4, RNR5, OMIM: 180450). Homogenization is not perfect, however, so that it becomes possible to study its efficiency within genes, within arrays, and between arrays by measuring and comparing DNA sequence variation. Previous studies with randomly cloned genomic DNA fragments showed that different parts of the gene evolve at different rates but did not allow comparison of rDNA sequences derived from specific chromosomes. We have now cloned and sequenced rDNA fragments from specific acrocentric chromosomes to (1) study homogenization along the rDNA and (2) compare homogenization within chromosomes and between homologous and nonhomologous chromosomes. Our results show high homogeneity among regulatory and coding regions of rDNA on all chromosomes, a surprising homogeneity among adjacent distal non-rDNA sequences, and the existence of one to three very divergent intergenic spacer classes within each array.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "11350117"}], "author": ["Sylvester J E", "Gonzalez I L"], "relatedPublications": 0, "id": "50|r3d100010527::b53ee245882beec708d3d2d9dcd6be5b", "title": ["Human rDNA: evolutionary patterns within the genes and tandem arrays derived from multiple chromosomes."], "relatedDatasets": 1}
167
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::33195e5096c884c0bf8f1310eb77cacc", "id": {"identifier": "10.5517/cc4zlb0", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::99857c3fe6bdd0189a44fc60943791c6", "id": {"identifier": "10.5517/cc4zl9z", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Two new polyamine ligands 2,9-bis(2-methylaminoethylaminomethyl)phenanthroline (L3) and 6,6′-bis(2-methylaminoethylaminomethyl)-2,2′-bipyridyl (L4) have been synthesized. L3 and L4 contain respectively a phenanthroline and a bipyridyl unit bearing two N-methylethylenediamine side-arms. Their co-ordination properties toward CuII were studied by means of potentiometric, calorimetric, UV-vis spectroscopic and electrochemical measurements and compared with those of macrocyclic ligands with similar molecular architecture (L1 and L2). The macrocyclic ligands give only mononuclear complexes, while the acyclic ligands form mono- and bi-nuclear complexes in aqueous solution, due to their higher flexibility. Considering the mononuclear complexes, the analysis of the thermodynamic parameters for copper(II) co-ordination shows that the complexes with the acyclic ligands are mainly stabilized by the entropic change. On the contrary, the enthalpic term gives a more favourable contribution to the formation of the complexes with the macrocyclic ligands. This different behaviour is discussed in terms of ligand rigidity and ligand and metal desolvation. The crystal structure of the [CuL3]2+ complex shows the metal to be six-co-ordinated, with a rather unusual geometry, enveloped inside the ligand cleft and almost co-ordinatively saturated and shielded from solvent molecules. At the same time the two heteroaromatic nitrogens are weakly bound to the metal.", "author": ["Paoletti Piero", "Masotti Andrea", "Ciattini Samuele", "Navon Nadav", "Valtancoli Barbara", "Bazzicalupi Carla", "Giorgi Claudia", "Bencini Andrea", "Meyerstein Dan"], "localIdentifier": [{"type": "doi", "id": "10.1039/b002102o"}], "id": "50|dli_resolver::53b8403e63d0a305a8f3dea9d470c646", "relatedPublications": 0, "date": [""], "title": ["\"Copper-(II) and -(I) co-ordination by hexa-amine ligands of different rigidities. A thermodynamic, structural and electrochemical investigation †\""], "relatedDatasets": 2}
168
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::df1a48074584c393bc67821a304b160a", "id": {"identifier": "xp_005211044.1", "schema": "ncbi-p"}}], "abstract": "", "title": ["Bovine A20 gene overexpression during bovine viral diarrhea virus-1 infection blocks NF-κB pathway in MDBK cells"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.dci.2017.07.019"}], "id": "50|elsevier____::184022ec852f7cfe3b817eed1d5b8cbf", "relatedPublications": 0, "date": ["2017"], "relatedDatasets": 1}
169
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::916fbd5e01ce4f534bcaef452ad74d66", "id": {"identifier": "am157175.1", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::9f2cc7efd9c5da9ffd322480571d4e83", "id": {"identifier": "ay184478.1", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::d3fd80d46a5bf18c6c37a4204ba4be5d", "id": {"identifier": "x16415.1", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3298aed744fbed8c57b51b2f3a35ae7c", "id": {"identifier": "ay912055", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::aee1d846fa121513116a7be7a4033ebd", "id": {"identifier": "aj243957.1", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::532f4a10e9cddc502482ada6b179008f", "id": {"identifier": "ay912058.1", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7ff19b04edac165ee5597bdbe0f8cbb5", "id": {"identifier": "ay912056.1", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c705257ef212253a2dc3ed08191cc1c4", "id": {"identifier": "ay028309.2", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::2e63765a2920e7a9d5292d7ef97f5765", "id": {"identifier": "m92280.1", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c6a5a169a11b7357c79b10fc6c4e5a6d", "id": {"identifier": "y09851.2", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::51e50ad7b57385d0d885ae910a324215", "id": {"identifier": "ay912057.1", "schema": "genbank"}}], "abstract": "", "title": ["Use of reverse transcription loop-mediated isothermal amplification for the detection of"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jviromet.2006.08.014"}], "id": "50|elsevier____::3a88d29215c2231c639ebbccfeb0e84e", "relatedPublications": 0, "date": ["2006"], "relatedDatasets": 11}
170
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171
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::bcd017815a10820bb155217848becdbf", "id": {"identifier": "10.5517/ccz7ftf", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Two are better than one: The diazaperopyrenium dication acts as both a viologen-like electron-poor and an electron-rich guest, resulting in the formation of a 1:2 complex with cucurbit[8]uril. This chameleonic binding facilitates deaggregation of the dications from aqueous solutions, leading to an increase in the fluorescence quantum yield of the diazaperopyrenium dication.", "author": ["Kurutz Josh W.", "Sarjeant Amy A.", "Kikuchi Takashi", "Ke Chenfeng", "Hartlieb Karel J.", "Basuray Ashish N.", "Forgan Ross S.", "Jacquot de Rouville Henri-Pierre", "Fraser, Stoddart J."], "localIdentifier": [{"type": "doi", "id": "10.1002/ajoc.201200187"}], "id": "50|dli_resolver::aea559c217c742fae449291b0b6cc89d", "relatedPublications": 0, "date": [""], "title": ["\"Chameleonic Binding of the Dimethyldiazaperopyrenium Dication by Cucurbit8uril\""], "relatedDatasets": 1}
172
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c47318d54a1bd97808c19064ef35f383", "id": {"identifier": "l35256", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::cf00e22200f415d2a91c15193756dde4", "id": {"identifier": "u18766", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b109139c7cbbb44e80318ebeda73f45e", "id": {"identifier": "d14638", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3b82bd6cd48d1258558f51eef8680774", "id": {"identifier": "l39122", "schema": "genbank"}}], "abstract": "", "title": ["Specific and quantitative detection of PCR products from"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.mimet.2006.12.009"}], "id": "50|elsevier____::1fa1cf2cf6e479c6769951a22ed9345b", "relatedPublications": 0, "date": ["2007"], "relatedDatasets": 4}
173
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::004cc8342b26ff707c1bcbca8d8c8fd9", "id": {"identifier": "10.5517/cc6fmw3", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::bc8070ed1b95fa446a4f4fd910631cf0", "id": {"identifier": "10.5517/ccsr2k4", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The preparation and detailed characterizations of the high-spin seven-coordinate complexes [M(κ 7 N-L)](ClO 4 ) 2  (M = Mn (II), Fe(II); L = N,N,N',N'-tetrakis(2-pyridylmethyl)-2,6-bis(aminomethyl)pyridine) are described. The X-ray crystal structures reveal seven-coordinate metal complex ions. Consideration of continuous shape measures reveals that the coordination environments about the metal ions are better described as having (C s ) face-capped trigonal prismatic symmetry than (C 2 ) pentagonal bipyramidal symmetry. The (S=5/2) Mn(II) species shows complicated X-band electron paramagnetic resonance (EPR) spectra and broad, unrevealing  1 H NMR spectra. In contrast, the (S=2) Fe(II) complex is EPR-silent and shows completely interpretable  1 H NMR spectra containing the requisite number of paramagnetically shifted peaks in the range δ+150 to ―60. The  13 C NMR spectra are likewise informative. Variable-temperature  1 H NMR spectra show coalescences and decoalescences indicative of an intramolecular process that pairwise-exchanges the nonequivalent pyridylmethyl \"arms\" of the two bis(pyridylmethyl)amine (bpa) domains. A suite of NMR techniques, including T 1  relaxation measurements and variable-temperature  1 H― 1 H correlation spectroscopy,  1 H― 1 H total correlation spectroscopy,  1 H― 1 H nuclear Overhauser effect spectroscopy/exchange spectroscopy, and  1 H― 13 C heteronuclear multiple-quantum coherence experiments, has been used to assign the NMR spectra and characterize the exchange process. Analysis of the data from these experiments yields the following thermodynamic parameters for the exchange: ΔH ‡  = 53.6 ± 2.8 kJ mol ―1 , ΔS ‡  = ―10.0 ± 9.8 J K ―1  mol ―1 , and ΔG ‡  (298 K) = 50.6 kJ mol ―1 . Density functional theory (B3LYP) calculations have been used to explore the energetics of possible mechanistic pathways for the underlying fluxional process. The most plausible mechanism found involves dissociation of a pyridylmethyl arm to afford a strained six-coordinate species followed by rebinding of the arm in a different position to afford a new seven-coordinate transition state in which the pyridylmethyl arms within each bpa domain are essentially equivalent; the calculated energy barrier for this process is 53.5 kJ mol ―1 , in good agreement with the observations.", "author": ["Taylor Ivan", "Lonnon David G.", "Colbran Stephen B.", "Ball Graham E.", "Craig Donald C."], "localIdentifier": [{"type": "doi", "id": "10.1021/ic900233d"}], "id": "50|dli_resolver::6859d6a25c9fa203103cee91c8d7024b", "relatedPublications": 0, "date": [""], "title": ["\"Fluxionality in a Paramagnetic Seven-Coordinate Iron(II) Complex: A Variable-Temperature, Two-Dimensional NMR and DFT Study\""], "relatedDatasets": 2}
174
{"typology": "publication", "publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::d8a45c0da51f8fbd20ed1d1f1a64e1d4", "id": {"identifier": "10.6084/m9.figshare.5632663.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Guibert Cyril", "Leclerc Lara", "Sarry Gwendoline", "Pourchez Jérémie", "Bitounis Dimitrios", "Vergnon Jean-Michel", "Forest Valérie"], "localIdentifier": [{"type": "doi", "id": "10.1080/17435390.2017.1406170"}], "id": "50|dli_resolver::93b830b4973a5451f352947c3ad35dbf", "relatedPublications": 0, "date": [""], "title": ["Metal load assessment in patient pulmonary lavages: towards a comprehensive mineralogical analysis including the nano-sized fraction"], "relatedDatasets": 1}
175
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::2c8bf8e778e2529ce084b2f55656a8ef", "id": {"identifier": "ay763504", "schema": "genbank"}}], "abstract": "", "title": ["LvGroucho and nuclear β-catenin functionally compete for Tcf binding to influence activation of the endomesoderm gene regulatory network in the sea urchin embryo"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ydbio.2004.12.023"}], "id": "50|elsevier____::2afa86fe75908af52c1d02c861684d1d", "relatedPublications": 0, "date": ["2005"], "relatedDatasets": 1}
176
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::2a93e7b1071b5539a823c00f53c1fdfa", "id": {"identifier": "10.3886/icpsr23862.v2", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Waters, Nicole L.", "Lee, Cynthia"], "localIdentifier": [{"type": "icpsr", "id": "115242"}], "relatedPublications": 0, "title": ["A verdict on the reporters: The representativeness and accuracy of commercially published jury verdict reports"], "id": "50|r3d100010255::e01c248bc33336b594fe1021697ce8cc"}
177
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}, {"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3c9b862e677d7364f7d59c1c1214956a", "id": {"identifier": "x69761", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3f7a9826fa84d1393065a5db161c6f6f", "id": {"identifier": "x69760", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::171b97c98d71de1960bda7694b337cce", "id": {"identifier": "x03821", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::349895afa1b584f793f7e9b9e818cafd", "id": {"identifier": "x04334", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::344dfc936a1b100669532dc9b2266ebc", "id": {"identifier": "x96847", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::e6c9db45714e5f9963cbdf0a7cbfc59c", "id": {"identifier": "x69759", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::5a7ce37f0995a04c10a63f081e2d68f2", "id": {"identifier": "x61097", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::228d60fd3edb48f00d1c3810405eabc6", "id": {"identifier": "x13711", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::45fd2f71e638f0e825417126cf2381fc", "id": {"identifier": "x04333", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::fedaa4b1ef644cec313bd04dcd6ca5e9", "id": {"identifier": "x12988", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::fcb0b2f65b4937986797675fcc4cb7d0", "id": {"identifier": "x05985", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::40ecf6bda830b9d606c44de09bbb65b6", "id": {"identifier": "x12990", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::e57b04ce62f75c47c3fd390aad0e12a2", "id": {"identifier": "x12989", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c8031d590e21030af89cbf5ae1d94f8c", "id": {"identifier": "x05986", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3296db30995f78e299651263113f2779", "id": {"identifier": "m21356", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::af8a4ce255107e58750a729e841b8689", "id": {"identifier": "x12987", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ee75db82177145210856f3d0ea49ed87", "id": {"identifier": "y00322", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::19f1b1f4821ec71bf9a79c7d14ecc70c", "id": {"identifier": "x69763", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::18c484d0afea5fffba8623b57e99f415", "id": {"identifier": "x05984", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b8ffe62fd7ad510717d9d9e9ed279f63", "id": {"identifier": "x73236", "schema": "ena"}}], "abstract": "<p>Abstract</p> <p>Background</p> <p>Evolutionary processes in gene regulatory regions are major determinants of organismal evolution, but exceptionally challenging to study. We explored the possibilities of evolutionary analysis of phylogenetic footprints in 5'-noncoding sequences (NCS) from 27 ribulose-1,5-bisphosphate carboxylase small subunit (<it>rbcS</it>) genes, from three dicot families (Brassicaceae, Fabaceae and Solanaceae).</p> <p>Results</p> <p>Sequences of up to 400 bp encompassing proximal promoter and 5'-untranslated regions were analyzed. We conducted phylogenetic footprinting by several alternative methods: generalized Lempel-Ziv complexity (<it>C</it><sub><it>LZ</it></sub>), multiple alignments with DIALIGN and ALIGN-M, and the MOTIF SAMPLER Gibbs sampling algorithm. These tools collectively defined 36 conserved blocks of mean length 12.8 bp. On average, 12.5 blocks were found in each 5'-NCS. The blocks occurred in arrays whose relative order was absolutely conserved, confirming the existence of 'conserved modular arrays' in promoters. Identities of half of the blocks confirmed past <it>rbcS </it>research, including versions of the I-box, G-box, and GT-1 sites such as Box II. Over 90% of blocks overlapped DNase-protected regions in tomato 5'-NCS. Regions characterized by low <it>C</it><sub><it>LZ </it></sub>in sliding-window analyses were also frequently associated with DNase-protection. Blocks could be assigned to evolutionary hierarchies based on taxonomic distribution and estimated age. Lineage divergence dates implied that 13 blocks found in all three plant families were of Cretaceous antiquity, while other family-specific blocks were much younger. Blocks were also dated by formation of multigene families, using genome and coding sequence information. Dendrograms of evolutionary relations of the 5'-NCS were produced by several methods, including: cluster analysis using pairwise <it>C</it><sub><it>LZ </it></sub>values; evolutionary trees of DIALIGN sequence alignments; and cladistic analysis of conserved blocks.</p> <p>Conclusion</p> <p>Dicot 5'-NCS contain conserved modular arrays of recurrent sequence blocks, which are coincident with functional elements. These blocks are amenable to evolutionary interpretation as hierarchies in which ancient, taxonomically widespread blocks can be distinguished from more recent, taxon-specific ones.</p>", "author": ["Donnison Iain S", "Scott Ian M", "Donnison, Iain S.", "Weeks Katie E", "Scott, Ian M.", "Chuzhanova, Nadia A.", "Weeks, Katie E.", "Chuzhanova Nadia A"], "localIdentifier": [{"type": "pmid", "id": "17407546"}, {"type": "openaire", "id": "oai:dnet:dedup_wf_001::bf4b80274d9ab26c7ba1418f7c3bb185"}, {"type": "doi", "id": "10.1186/1471-2148-7-51"}], "id": "50|dedup_wf_001::6b8bf2fbad334f73c2c9bdef5de0751b", "relatedPublications": 0, "date": ["2007-04-02"], "title": ["Evolutionary hierarchies of conserved blocks in 5-noncoding sequences of dicot rbcS genes."], "relatedDatasets": 32, "subject": [{"scheme": "keyword", "value": "Biology (General)"}, {"scheme": "keyword", "value": "Q"}, {"scheme": "keyword", "value": "QH301-705.5"}, {"scheme": "keyword", "value": "Science"}, {"scheme": "keyword", "value": "QH359-425"}, {"scheme": "keyword", "value": "DOAJ:Biology and Life Sciences"}, {"scheme": "keyword", "value": "Evolution"}, {"scheme": "keyword", "value": "DOAJ:Biology"}, {"scheme": "keyword", "value": "Research Article"}]}
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{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::2f5ca3acb43bff43647dff431a002757", "id": {"identifier": "10.6084/m9.figshare.c.3295472.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::bbb64671137fb5ca69432eae75bc0d50", "id": {"identifier": "10.6084/m9.figshare.c.3295472", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Dispersal is a key determinant of the spatial distribution and abundance of populations, but human-made fragmentation can create barriers that hinder dispersal and reduce population viability. This study presents a modeling framework based on dispersal kernels (modified Laplace distributions) that describe stream fish dispersal in the presence of obstacles to passage. We used mark–recapture trials to quantify summer dispersal of brook trout (Salvelinus fontinalis) in four streams crossed by a highway. The analysis identified population heterogeneity in dispersal behavior, as revealed by the presence of a dominant sedentary component (48–72% of all individuals) characterized by short mean dispersal distance (<10 m), and a secondary mobile component characterized by longer mean dispersal distance (56–1086 m). We did not detect evidence of barrier effects on dispersal through highway crossings. Simulation of various plausible scenarios indicated that detectability of barrier effects was strongly dependent on...", "author": ["Rodríguez Marco A.", "Pépino Marc", "Magnan Pierre"], "localIdentifier": [{"type": "doi", "id": "10.1890/11-1866.1"}], "id": "50|dli_resolver::14802077e99175cdd6376a0b9ab4f35b", "relatedPublications": 0, "date": [""], "title": ["\"Fish dispersal in fragmented landscapes: a modeling framework for quantifying the permeability of structural barriers\""], "relatedDatasets": 2}
179
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::010e642ce26b1b66caf442d30caa0e0a", "id": {"identifier": "ae016823", "schema": "ncbi-n"}}], "abstract": "", "title": ["Lp95, a novel leptospiral protein that binds extracellular matrix components and activates e-selectin on endothelial cells"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jinf.2009.07.010"}], "id": "50|elsevier____::6aadf1e3acc8766214a18a87d90c051c", "relatedPublications": 0, "date": ["2009"], "relatedDatasets": 1}
180
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::aad457c6cd705157cb5f65bf711523d6", "id": {"identifier": "10.5517/cc89fpn", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::30017b8bb70589e52c2123d5df916491", "id": {"identifier": "10.5517/cc89fqp", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Five enantiopure palladacycles containing palladium bonded to a stereogenic carbon and an N-coordinated oxindole were synthesized by the reaction of alkenyl aryl triflates 2 and 9 with Pd(0) bisphosphine complexes. Two palladacyclic complexes, 3β and 10α, were characterized by single-crystal X-ray crystallography. The reactivity of neutral palladacycles 3β and 10β was studied in detail. These unusual palladium alkyls, which have three accessible β-hydrogens, are thermally stable at temperatures as high as 120 °C. At higher temperature, or at room temperature in the presence of weak acids, these complexes epimerize at the stereogenic carbon bonded to palladium. The mechanism of the acid-promoted epimerization was studied in detail. During this epimerization, cationic palladium alkyls 13/14 and 33 and cationic palladium hydride alkene complexes 31 and 32 are in rapid equilibrium.", "author": ["Burke Brenda J.", "Overman Larry E."], "localIdentifier": [{"type": "doi", "id": "10.1021/ja045047p"}], "id": "50|dli_resolver::9caf7c1a4b94b97c72471a543f6a48f0", "relatedPublications": 0, "date": [""], "title": ["\"Enantioselective Synthesis of Six-Membered Palladacycles Having Metal-Bound Stereogenic Carbons:  Isolation and Reactivity of Palladacycles Containing Readily Accessible β-Hydrogens\""], "relatedDatasets": 2}
181
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::18712f41f3364bb9ac469145c1a66f72", "id": {"identifier": "10.5517/ccv88p1", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title compound, Cs3[Cr(C2O4)3]·2H2O, has been synthesized for the first time and the spatial arrangement of the cations and anions is compared with those of the other members of the alkali metal series. The structure is built up of alternating layers of either the d or l enantiomers of [Cr(oxalate)3]3−. Of note is that the distribution of the [Cr(oxalate)3]3− enantiomers in the Li+, K+ and Rb+ tris(oxalato)chromates differs from those of the Na+ and Cs+ tris(oxalato)chromates, and also differs within the corresponding BEDT-TTF [bis(ethylenedithio)tetrathiafulvalene] conducting salts. The use of tris(oxalato)chromate anions in the crystal engineering of BEDT-TTF salts is discussed, wherein the salts can be paramagnetic superconductors, semiconductors or metallic proton conductors, depending on whether the counter-cation is NH4+, H3O+, Li+, Na+, K+, Rb+ or Cs+. These materials can also be superconducting or semiconducting, depending on the spatial distribution of the d and l enantiomers of [Cr(oxalate)3]3−.", "author": ["Christian Anthony", "Akutsu Hiroki", "Martin Lee"], "localIdentifier": [{"type": "doi", "id": "10.1107/s0108270110014861"}], "id": "50|dli_resolver::e24d4bd0bb0b8376672637b918d859d7", "relatedPublications": 0, "date": [""], "title": ["\"Tricaesium tris(oxalato-κ2O1,O2)chromate(III) dihydrate\""], "relatedDatasets": 1}
182
{"typology": "publication", "publisher": ["Applied and environmental microbiology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::1817246c08bd7fb3584c089665f5afd2", "id": {"identifier": "m32021", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6ec0beff0161da90647b08f1b907afe8", "id": {"identifier": "aj006307", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::a04eecaa49c39ad402786c55ff9bfaca", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9797264&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::e4901049bec2ecea8a6e3109f0e7efe9", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9797264&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c77caf13ed5a49a6126c5bbf0c385b05", "id": {"identifier": "af027407", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::0c25343cf5cd6a04317c1e50edc6ad34", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9797264&result=sequence_release", "schema": "url"}}], "abstract": "None: Complete metabolism of chlorinated benzenes is not a feature that is generally found in aerobic bacteria but is thought to be due to a novel recombination of two separate gene clusters. Such a recombination could be responsible for adaptation of a natural microbial community in response to contamination with synthetic chemicals. This hypothesis was tested in a chlorobenzene (CB)-contaminated aquifer. CB-degrading bacteria from a contaminated site were characterized for a number of years by examining a combination of growth characteristics and DNA-DNA hybridization, PCR, and DNA sequence data. The genetic information obtained for the CB pathway of the predominant microorganism, Ralstonia sp. strain JS705, revealed a unique combination of (partially duplicated) genes for chlorocatechol degradation and genes for a benzene-toluene type of aromatic ring dioxygenase. The organism was detected in CB-polluted groundwater by hybridizing colonies cultivated on low-strength heterotrophic media with probes for the CB pathway. Southern hybridizations performed to determine the organization of the CB pathway genes and the 16S ribosomal DNA indicated that CB-degrading organisms isolated from different wells at the site were identical to JS705. Physiological characterization by the Biolog test system revealed some differences. The genes for the aromatic ring dioxygenase and dihydrodiol dehydrogenase of JS705 were detected in toluene and benzene degraders from the same site. Our results suggest that recent horizontal gene transfer and genetic recombination of existing genes between indigenous microorganisms were the mechanisms for evolution of the catabolic pathway. Evolution of the CB pathway seems to have created the capacity for natural attenuation of CB at the contaminated site.", "author": ["Jc, Spain", "Nishino ", "Werlen, C.", "Sf, Nishino", "Jr, Meer", "Spain ", "Werlen "], "localIdentifier": [{"type": "pmid", "id": "9797264"}, {"type": "pbmid", "id": "9797264"}], "id": "50|dedup_wf_001::6e64ea08ddf13708263d17b0133066f6", "relatedPublications": 0, "date": ["1998-11-01"], "title": ["Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater"], "relatedDatasets": 6}
183
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::620be65d2c3c0759615927315362fd34", "id": {"identifier": "10.6084/m9.figshare.c.4112576.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::1068c27fe851df423bddff9376bf4072", "id": {"identifier": "10.6084/m9.figshare.6350273.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::cea407dda67f3a2f52ffd4bbafb6194f", "id": {"identifier": "10.6084/m9.figshare.c.4112576", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2d2cc3b92ca94c75f9fb84380e010f6b", "id": {"identifier": "10.6084/m9.figshare.6350273", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Ali Zulfiqar", "Rana Iqrar Ahmad", "Khan Abdus Salam", "Shamsi Imran Haider", "Saddique Muhammad Abu Bakar"], "localIdentifier": [{"type": "doi", "id": "10.1186/s12284-018-0226-1"}], "id": "50|dli_resolver::337e1df84e949cdd63784a65b5d6febb", "relatedPublications": 0, "date": [""], "title": ["Inoculation with the endophyte Piriformospora indica significantly affects mechanisms involved in osmotic stress in rice"], "relatedDatasets": 4}
184
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d31c97ec98db724f71ae56acba884b4a", "id": {"identifier": "10.5517/cc13j896", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2147d3fdd6bdec8f91aca3f2067ba676", "id": {"identifier": "10.5517/cc13j8b7", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Fukunaga Hiroki", "Miyasaka Hitoshi"], "localIdentifier": [{"type": "doi", "id": "10.1002/anie.201410057"}], "id": "50|dli_resolver::1c326fbb3b92445c10716c2944e99586", "relatedPublications": 0, "date": [""], "title": ["\"Magnet Design by Integration of Layer and Chain Magnetic Systems in a π-Stacked Pillared Layer Framework\""], "relatedDatasets": 2}
185
{"typology": "publication", "publisher": ["The Journal of biological chemistry"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::379188fc3a37e363b6af92837e0757a5", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=15377663&result=sequence_release", "schema": "url"}}], "abstract": "None: The cauda epididymidis functions in the storage and protection of mature, fertile spermatozoa. We previously identified a region-specific secretory glycoprotein (termed HEP64) of the hamster proximal cauda epididymidis that specifically bound and coated the nonviable, but not the viable, spermatozoa within the epididymal lumen. In this study we employed expression screening of a hamster epididymal cDNA library to obtain the full-length sequence of HEP64 and to identify it as the fibrinogen-like protein fgl2. Northern blot analysis demonstrated that fgl2 mRNA is highly expressed by the proximal cauda epididymidis in comparison to other hamster tissues examined, and, in situ hybridization analysis of the epididymis revealed that fgl2 mRNA exhibited a region- and principal cell-specific expression pattern. Immunohistochemistry confirmed the association of fgl2 with abnormal spermatozoa in the cauda epididymidis and revealed smaller fgl2-containing particles. Immunoelectron microscopy revealed that fgl2 was distributed throughout an amorphous, \"death cocoon,\" complex assembled onto abnormal spermatozoa and that the smaller fgl2 aggregates consisted of the amorphous material with embedded sperm fragments, organelles, and membrane vesicles. A protocol was developed to isolate an enriched death cocoon fraction. SDS-PAGE and microsequence analyses revealed that the Mr 64,000 fgl2 monomer was assembled into two disulfide-linked oligomers of Mr 260,000 and 280,000. These data demonstrate that the epididymis possesses a specific mechanism to identify and envelop defective spermatozoa with a protein complex containing the fibrinogen-like protein fgl2. We propose that this represents an important protective mechanism not only to shield the viable sperm population from potentially deleterious enzymes released by dying spermatozoa but also to prevent the release of sperm proteins that could initiate an immune response if they escaped the epididymal environment.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "15377663"}], "author": ["Winfrey Virginia P", "Melner Michael H", "Olson Gary E", "NagDas Subir K"], "relatedPublications": 0, "id": "50|r3d100010527::b577312871216b8ad3e9f3578eadee45", "title": ["Region-specific expression and secretion of the fibrinogen-related protein, fgl2, by epithelial cells of the hamster epididymis and its role in disposal of defective spermatozoa."], "relatedDatasets": 1}
186
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 27, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::3ce96d04b82a5cc19f14d61cf7850ff8", "id": {"identifier": "np_060758.2", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::4e4b3053299bfad47502ee12872d7528", "id": {"identifier": "np_036462.2", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::612e8e73963c5b8dc1995fbe0b639bb0", "id": {"identifier": "nm_006268.4", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::3c5d7c2588b2951b0c961377a13f3fb9", "id": {"identifier": "np_989662.1", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::d5c22ff0580389270d8993946ad542b8", "id": {"identifier": "np_001128627.1", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::135675c8d7faab2cf2cf087bf6ff4007", "id": {"identifier": "np_006259.1", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::3f8db5f3aca91fb416601a204477772c", "id": {"identifier": "np_001267471.1", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::dbcc1e3162a40c5afb09d5c722678ccc", "id": {"identifier": "np_001007153.1", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::7927390ada5c91f80e9d544e324ff724", "id": {"identifier": "xp_002808108.1", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::d94759ffa08abf081407cc219b7699e2", "id": {"identifier": "np_001184101.1", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::58f27f09474c7cfa7c8def50c2c7dcce", "id": {"identifier": "np_006757.2", "schema": "ncbi-p"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::29e92daf28bd549074d00b278f01c5e9", "id": {"identifier": "np_035392.1", "schema": "ncbi-p"}}], "abstract": "", "title": ["Mutations in the BAF-Complex Subunit"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ajhg.2018.01.014"}], "id": "50|elsevier____::763c84777b659b7ee478833bb98146cc", "relatedPublications": 0, "date": ["2018"], "relatedDatasets": 12}
187
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f5f9f3de1d6bcee4f7c2ed5e853e43e9", "id": {"identifier": "10.5517/cc50w23", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::00f4d3ea3f0c74b0624f94885d3d0ebb", "id": {"identifier": "10.5517/cc50vzz", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::41712076c1b1d61a9f62e57db5f92985", "id": {"identifier": "10.5517/cc50w12", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ec9a05cd452ecbd3e26d91a0803f0843", "id": {"identifier": "10.5517/cc50w01", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The complex 12+ which has two pendant 4-pyridyl substituents may be viewed as a metal-containing analogue of 4,4′-bipyridine. The complex undergoes N-alkylation reactions with a variety of alkylating agents to give more highly functionalised tetracationic complexes which may be termed metalloviologens by analogy with viologens. These complexes may also be prepared by alkylation of the free ligands and subsequent coordination of the pendant quaternised ligand. Structural studies have established that the N-alkylated complexes possess the correct spatial characteristics for the preparation of metallocycles analogous to known cyclic bis(4,4′-bipyridinium) species which possess useful molecular recognition properties.", "author": ["Neuburger Markus", "Tocher Derek A.", "Housecroft Catherine E.", "Schofield Emma", "Zehnder Margareta", "Raithby Paul R.", "Constable Edwin C.", "Zimmermann Yves", "Phillips David", "Sparr Emma"], "localIdentifier": [{"type": "doi", "id": "10.1039/b000940g"}], "id": "50|dli_resolver::635ce3a55e8be9381101f8792c373960", "relatedPublications": 0, "date": [""], "title": ["\"Development of supramolecular structure through alkylation of pendant pyridyl functionality\""], "relatedDatasets": 4}
188
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b642cbfde524e103a5425b5a5ceaa021", "id": {"identifier": "10.1594/pangaea.875551", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2635f4dc14fa6922b68c4d1080e58d70", "id": {"identifier": "10.1594/pangaea.875550", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::fa03483c04193023fdb169bda7e6617f", "id": {"identifier": "10.1594/pangaea.875549", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1e12c3f716d534e7f775cacadd26c740", "id": {"identifier": "10.1594/pangaea.875545", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::74447b6cf906893c0e558658a027f993", "id": {"identifier": "10.1594/pangaea.875552", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b2e2708a173738911a45cd419da48464", "id": {"identifier": "10.1594/pangaea.875547", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ba9f21befb32ea826426a727ae4f00f0", "id": {"identifier": "10.1594/pangaea.875548", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b47688e4572316432b5bb38bd314e014", "id": {"identifier": "10.1594/pangaea.875543", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Pangaea", "datasourceId": "dli_________::r3d100010134"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Abstract#R##N#[1] This study examines the role of aqueous secondary organic aerosol formation in the North American Sonoran Desert as a result of intense solar radiation, enhanced moisture, and biogenic volatile organic compounds (BVOCs). The ratio of water-soluble organic carbon (WSOC) to organic carbon (OC) nearly doubles during the monsoon season relative to other seasons of the year. When normalized by mixing height, the WSOC enhancement during monsoon months relative to preceding dry months (May–June) exceeds that of sulfate by nearly a factor of 10. WSOC:OC and WSOC are most strongly correlated with moisture parameters, temperature, and concentrations of O3 and BVOCs. No positive relationship was identified between WSOC or WSOC:OC and anthropogenic tracers such as CO over a full year. This study points at the need for further work to understand the effect of BVOCs and moisture in altering aerosol properties in understudied desert regions.", "author": ["Wang Zhen", "Betterton Eric A.", "Sorooshian Armin", "Arellano Avelino", "Youn Jong-Sang", "Wonaschütz Anna"], "localIdentifier": [{"type": "doi", "id": "10.1002/grl.50644"}], "id": "50|dli_resolver::5dedef243f3784f05caa78023cfd5605", "relatedPublications": 0, "date": [""], "title": ["\"Evidence of aqueous secondary organic aerosol formation from biogenic emissions in the North American Sonoran Desert\""], "relatedDatasets": 8}
189
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::42fdfa8a47673ac81c6aa675b8e0b312", "id": {"identifier": "fj009574", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::915ddfd4d039a94608e2c0e111f1f9ea", "id": {"identifier": "eu725457", "schema": "genbank"}}], "abstract": "", "title": ["Fermentative hydrogen production by two novel strains of"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ijhydene.2009.06.079"}], "id": "50|elsevier____::c7100c3d56bcc2b1f45de14e1f4ea453", "relatedPublications": 0, "date": ["2009"], "relatedDatasets": 2}
190
{"typology": "publication", "publisher": ["Japan Society for Analytical Chemistry"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::700448e3fcb76d49a2c6916edb90904f", "id": {"identifier": "10.5517/cc8szjj", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Gnecco, Dino", "Ortíz, Benjamín", "Concepción, Lozada M.", "Enríquez, Raúl G.", "Reynolds, William F.", "Lobato, Carlos E.", "Soriano-García, Manuel"], "localIdentifier": [{"type": "doi", "id": "10.2116/analscix.20.x167"}], "id": "50|dli_resolver::a9818ca8d4f9626631cbaf4d29a0f48d", "relatedPublications": 0, "date": [""], "title": ["\"Crystal Structure of {Acetic acid 4-7-(4-acetoxy-3-methoxyphenyl)-3,5-dioxoheptyl-2-methoxy ester-03.05}-boron difluoride: A Boron Complex of Acetylated Tetrahydrocurcumin Derivative\""], "relatedDatasets": 1}
191
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b3eb72213c303edff12f05a57c898a42", "id": {"identifier": "10.5517/cc92f2v", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title complex, C21H21N, crystallizes in space group P, with Z = 6. The N atom is sp2-hybridized. The geometry of each of the three independent mol­ecules is unremarkable. The interaction of the three mol­ecules is discussed.", "author": ["Rohani Sohrab", "Jennings Michael", "Manifar Touraj"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536805007488"}], "id": "50|dli_resolver::a9a98f14fbd06723f3cce326e32c3f21", "relatedPublications": 0, "date": [""], "title": ["\"N-(3-Methylphenyl)-N,N-bis(4-methylphenyl)amine\""], "relatedDatasets": 1}
192
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::b1b072c48fd7ff39825a48b7a9e097fe", "id": {"identifier": "nc_001802.1", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::a41def9d666fe8baf871b39a611f041b", "id": {"identifier": "nc_000067.5", "schema": "ncbi-n"}}], "abstract": "", "title": ["Models of chronic kidney disease"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ddmod.2010.08.002"}], "id": "50|elsevier____::dd419b3ee57736f2a29c135595bb71b5", "relatedPublications": 0, "date": ["2010"], "relatedDatasets": 2}
193
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6ea816f1cb4cb77bd3e0c7fb43f0dafc", "id": {"identifier": "10.5517/cc7v85h", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d8f1e46f27636ef31dc95f654b5ba48e", "id": {"identifier": "10.5517/cc7v84g", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::14a541f58b9567b305408c598c208fb5", "id": {"identifier": "10.5517/cc7v86j", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The lithium derivative Li(THE)C(SiMe 3 ) 2 (SiMe 2 C 5 H 4 N-2) (1) reacted with AlCl 3  or Me 2 AlCl to give, respectively, the monomeric compounds AlCl 2 C(SiMe 3 ) 2 (SiMe 2 C 5 H 4 N-2) (2a) and AlMe 2 C(Sime 2 ) 2 (SiMe 2 C S H 4 N-2) (2b). The product from reaction with commercially available GaBr 3  was the analytically pure monomeric heterocycle GaBr(OH)C(Sime 3 ) 2 (SiMe 2 C 5 H 4 N-2) (3), indicating that the starting halide had been partially hydrolysed before use. The reaction between 1 and commercially available InCl 3 gave a homogenous white solid [InCl(μ-X)C(SiMe3) 2 (SiMe 2 C 5 H 4 N-2)] 2  (4) with X = Cl (59%) or OH (41%). The X-ray crystal structures of 2a, 3, and 4 have been determined.", "author": ["David, Smith J.", "Hitchcock Peter B.", "Howson James", "Hill Michael S.", "Eaborn Colin"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jorganchem.2004.08.029"}], "id": "50|dli_resolver::56f572353084b1def6e9babe5af034b5", "relatedPublications": 0, "date": [""], "title": ["\"Organometallic compounds of Group 13 elements containing the ligand C(SiMe3)2(SiMe2C5H4N-2)\""], "relatedDatasets": 3}
194
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1e9154cf23c76c9d006f981296d90485", "id": {"identifier": "10.5517/ccb0ljf", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "In the title compound, C21H12Cl3N3O3·C4H9O, the six-membered heterocyclic ring lies on a threefold rotation axis and adopts a planar conformation. The mol­ecule exhibits a propeller-like shape. The acetone solvent mol­ecule is disordered.", "author": ["Luo Yan-Ping", "Zhou Hong-Bin"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536806000365"}], "id": "50|dli_resolver::71a705f641455021a08198e8017048f4", "relatedPublications": 0, "date": [""], "title": ["\"1,3,5-Tris(4-chlorophenyl)-1,3,5-triazinane-2,4,6-trione acetone solvate\""], "relatedDatasets": 1}
195
{"typology": "publication", "publisher": ["Japan Society for Analytical Chemistry"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b56c85b3b6152cffef8ac77e9960bdd2", "id": {"identifier": "10.5517/ccztscx", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Rajnikant ", "Gupta, Vivek K.", "Singh, Kuldeep", "Sachar, Renu", "Sharma, Neerupama"], "localIdentifier": [{"type": "doi", "id": "10.2116/xraystruct.29.19"}], "id": "50|dli_resolver::9056d97909429a73e5046642282dd015", "relatedPublications": 0, "date": [""], "title": ["\"Crystal Structure of Bis(O-propyldithiocarbonato-^|^kappa;2S,S^|^prime;)(3,5-lutidine-^|^kappa;N)nickel(II)\""], "relatedDatasets": 1}
196
{"typology": "publication", "publisher": ["Nucleic acids research"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::1e8e652d71f4739e4822c7a7677ef779", "id": {"identifier": "d30813", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::667cf9c345de48b3886b7050c202ae2e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7937080&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::55dd0b40f4ecc5d364a76022020a1ed1", "id": {"identifier": "d30812", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::8b8de892ddd02017d9fd9bc1900b6f68", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7937080&result=coding_release", "schema": "url"}}], "abstract": "None: We have cloned and sequenced the lasR gene, which is involved in the transcriptional activation of several pathogenic factors, from Pseudomonas aeruginosa IFO3455 and PA103. These clones were predicted to be an open reading frame of 239 amino acids as reported for the PAO1 strain. There is only a single base change resulting in an amino acid exchange from M145 (PAO1) to I (IFO3455). PA103 DNA differs with PAO1 DNA in two bases resulting in only a single amino acid substitution from R179 to W. When the IFO3455 LasR was expressed in a PA103 strain which is known to be LasR defective, proteinase gene activation was detected, however, when PA103 LasR was expressed, no enhancement was measurable. From these results, it appears that the amino acid substitution of R179 to W inactivated LasR activity. This substitution is located in the highly conserved sequence found in many transcription factors, including sigma factors, and may disrupt amphipathic alpha-helix, predicted for the 176 to 189 region, which precedes the putative helix-turn-helix DNA binding motif. We presumed that these three helices may contribute to specific DNA binding.", "author": ["Ishiwata, T.", "Kurata, M.", "Ishiwata T", "You Z", "Okuda K", "Fukushima J", "Kurata M", "Okuda, K.", "Fukushima, J.", "You, Z."], "localIdentifier": [{"type": "pmid", "id": "7937080"}, {"type": "pbmid", "id": "7937080"}], "id": "50|dedup_wf_001::fefab307dd0fcc986408aa6acfc776ad", "relatedPublications": 0, "date": ["1994-09-01"], "title": ["Intracellular receptor-type transcription factor, LasR, contains a highly conserved amphipathic region which precedes the putative helix-turn-helix DNA binding motif."], "relatedDatasets": 4}
197
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::5e6440c94030abc639e4c8748140a0b6", "id": {"identifier": "10.6084/m9.figshare.5792922.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::cb4ec9fa125cdf8ac6d3f263e73e1594", "id": {"identifier": "10.6084/m9.figshare.5792961.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::b1980f5fd32e1b1a752d52e7993a68b9", "id": {"identifier": "10.6084/m9.figshare.5792994.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::0a036c893b4539e9d35be36bd7c2c692", "id": {"identifier": "10.6084/m9.figshare.c.3978003.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::ccc7391b8208cca31e94616964514a7c", "id": {"identifier": "10.6084/m9.figshare.5792919.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d122db205da98516a7bd97a4d0363f6d", "id": {"identifier": "10.6084/m9.figshare.c.3978003", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::5312ea5b82eb5ad9a0bb5bf3574118dc", "id": {"identifier": "10.6084/m9.figshare.5792970.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Ruggeri Marco", "Astori Giuseppe", "Perbellini Omar", "Rodeghiero Francesco", "Rotta Gianluca", "Bernardi Martina", "Sella Sabrina", "Amati Eliana", "Chieregato Katia"], "localIdentifier": [{"type": "doi", "id": "10.1186/s13287-017-0755-3"}], "id": "50|dli_resolver::7adb48acc4ee76d58036fd7c50a561c8", "relatedPublications": 0, "date": [""], "title": ["High-throughput immunophenotypic characterization of bone marrow- and cord blood-derived mesenchymal stromal cells reveals common and differentially expressed markers: identification of angiotensin-converting enzyme (CD143) as a marker differentially expressed between adult and perinatal tissue sources"], "relatedDatasets": 7}
198
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 5, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::29fdc15e5e6e395f817bc16e3cce0732", "id": {"identifier": "s71779", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::d7333540f535dd735cd679cd77738dfb", "id": {"identifier": "aad28176", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::0929ecda4ed9800465ea5fada6986016", "id": {"identifier": "af200323", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::200e569e0321edb8ac97cd1c17c590ed", "id": {"identifier": "u81287", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c64e48cdc9a031bb69b0166d564fb601", "id": {"identifier": "aj002894", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::a39befd1443d62be0aa0aaaa3d15bbf0", "id": {"identifier": "af310215", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::cf5aa31ddace67b7d22c5aeef278be01", "id": {"identifier": "aal06943", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::190df10ebc54c2bca7859c076961beb4", "id": {"identifier": "aab07749", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::e07ccefa301e6318f31bb7f21dc5cdb3", "id": {"identifier": "aaf31403", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::10c616c97450ab54c5526a3ab40a1ff7", "id": {"identifier": "aab65412", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::07fed4bb8064619bd584ffb2ecb887c6", "id": {"identifier": "aj002893", "schema": "genbank"}}], "abstract": "", "title": ["Salinity- and ABA-induced up-regulation and light-mediated modulation of mRNA encoding glycine-rich RNA-binding protein from"], "localIdentifier": [{"type": "doi", "id": "10.1016/s0006-291x(02)02050-8"}], "id": "50|elsevier____::8de6976d84f16e5dd5aabe12071cf763", "relatedPublications": 0, "date": ["2002"], "relatedDatasets": 11}
199
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::38e023a5d9ee6cc8ffd0a21995f60706", "id": {"identifier": "10.3334/cdiac/otg.cdiac_158", "schema": "url"}}], "abstract": "<p>Abstract</p> <p>Background</p> <p>A time series of 4 consecutive years of measurements of the partial pressure of CO<sub>2 </sub>(pCO<sub>2</sub>) in the Scheldt estuarine plume is used here to estimate net ecosystem production (NEP).</p> <p>Results</p> <p>NEP in the Scheldt estuarine plume is estimated from the temporal changes of dissolved inorganic carbon (DIC). The strong seasonal variations of NEP are consistent with previous reports on organic carbon dynamics in the area. These variations are related to successive phytoplankton blooms that partly feed seasonally variable heterotrophy the rest of the year. On an annual time scale the Scheldt estuarine plume behaves as a net heterotrophic system sustained with organic carbon input from the Scheldt inner estuary and the Belgian coast. During one of the years of the time-series the estuarine plume behaved annually as a net autotrophic system. This anomalous ecosystem metabolic behaviour seemed to result from a combination of bottom-up factors affecting the spring phytoplankton bloom (increased nutrient delivery and more favourable incoming light conditions). This net autotrophy seemed to lead to a transient aa accumulation of organic carbon, most probably in the sediments, that fed a stronger heterotrophy the following year.</p> <p>Conclusion</p> <p>The present work highlights the potential of using pCO<sub>2 </sub>data to derive detailed seasonal estimates of NEP in highly dynamic coastal environments. These can be used to determine potential inter-annual variability of NEP due to natural climatic oscillations or due to changes in anthropogenic impacts.</p>", "author": ["Ruddick Kevin", "Borges Alberto V", "Delille Bruno", "Schiettecatte Laure-Sophie"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:dedup_wf_001::b1da88123982ebf9f21a27a1dce1cc74"}, {"type": "doi", "id": "10.1186/1472-6785-8-15"}], "id": "50|dedup_wf_001::0c288b8788aeda9072c2f0a7dd0778fc", "relatedPublications": 0, "date": [""], "title": ["Net ecosystem production and carbon dioxide fluxes in the Scheldt estuarine plume"], "relatedDatasets": 1, "subject": [{"scheme": "keyword", "value": "DOAJ:Ecology"}, {"scheme": "keyword", "value": "QH301-705.5"}, {"scheme": "keyword", "value": ": Sciences de la terre & géographie physique [G02] [Physique, chimie, mathématiques & sciences de la terre]"}, {"scheme": "keyword", "value": "Science"}, {"scheme": "keyword", "value": "Ecology"}, {"scheme": "keyword", "value": "QH540-549.5"}, {"scheme": "keyword", "value": "Biology (General)"}, {"scheme": "keyword", "value": "Q"}, {"scheme": "keyword", "value": "DOAJ:Earth and Environmental Sciences"}, {"scheme": "keyword", "value": ": Earth sciences & physical geography [G02] [Physical, chemical, mathematical & earth Sciences]"}, {"scheme": "keyword", "value": "DOAJ:Biology and Life Sciences"}, {"scheme": "keyword", "value": "DOAJ:Biology"}, {"scheme": "keyword", "value": "Research Article"}]}
200
{"typology": "publication", "publisher": ["Environmental microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::158ed9d54e917020972258477a29a07d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16817927&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c0896e490ac4709bba2f60a4c8c4ce06", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16817927&result=sequence_release", "schema": "url"}}], "abstract": "None: The current study describes the development of the porcine microbiota and its metabolic activities during the neonatal and weaning period. Using 16S rRNA-based approaches, we first analysed the ileal and colonic microbiota of neonatal piglets at days 2, 5 and 12 after birth. To further investigate the effect of weaning at 3 weeks of age, 19-day-old piglets (n = 64) were randomly allocated into two groups. Half of the piglets remained with their sows throughout the study, while the remaining piglets were weaned. As revealed by sequence analysis of 16S rRNA gene amplicons, the samples of 2-day-old piglets harboured a consortium of bacteria related to Escherichia coli, Shigella flexneri, Lactobacillus sobrius, Lactobacillus reuteri and Lactobacillus acidophilus. Moreover, species-specific real-time polymerase chain reaction assays unveiled that L. sobrius and L. reuteri predominated in the ileal samples of the neonatal and unweaned piglets with population levels up to 7 x 10(8) cells per gram of lumen content. Following weaning, however, these two lactobacilli were detected at significantly lower levels (< 10(3)) in the ileal samples. Furthermore, a shift in composition and metabolic activities of the predominant microbiota, and emergence of clostridia and E. coli, were encountered in the intestinal samples of the piglets after the early post-weaning period.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "16817927"}], "author": ["Smidt Hauke", "Awati Ajay A", "Miller Bevis G", "Jones Philip", "Stokes Christopher R", "de Vos Willem M", "Konstantinov Sergey R", "Akkermans Antoon D L", "Williams Barbara A"], "relatedPublications": 0, "id": "50|r3d100010527::9c2bc97d19b3322d61ad7b47f1235f11", "title": ["Post-natal development of the porcine microbiota composition and activities."], "relatedDatasets": 2}
201
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::47a0078da9554e72c5a1441e03d5357b", "id": {"identifier": "a29539", "schema": "genbank"}}], "abstract": "", "title": ["Synthesis of 3,5-bis(2-indolyl)pyridine and 3-[(2-indolyl)-5-phenyl]pyridine derivatives as CDK inhibitors and cytotoxic agents"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.bmc.2008.03.034"}], "id": "50|elsevier____::c31c2419cda4aa1aba8af23720161f41", "relatedPublications": 0, "date": ["2008"], "relatedDatasets": 1}
202
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::7f320a81490fefb7a20eeeb1acabb9ab", "id": {"identifier": "10.5517/cc46dl9", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Abstract   (−)6 aR ,11 aR -Dihydro-3-hydroxy-9,10-dimethoxy-6 H -benzofuro[3,2 c ] [1]-benzopyran (10-methoxymedicarpin), (+)-(2,3,4,-trimethoxyphenyl)-2,3-dihydro-7-hydroxy-4 H -1-benzopyran (7-hydroxy-2′,3′,4′-trimethoxyisoflavan) and (+)-(2,3,4-trimethoxy-5-hydroxyphenyl)-2,3-dihydro-7-hydroxy-4 H -1-benzopyran (7,5′-dihydroxy-2′,3′,4′-trimethoxyisoflavan) were isolated for the first time from dried  Medicago sativa  hay. Structural assignments were based on  1 H NMR and mass spectra, X-ray crystallography, and optical rotations.", "author": ["Barnekow David E.", "Spencer Gayland F.", "Plattner Ronald D.", "Clardy Jon", "Brinen Linda S.", "Jones Barry E."], "localIdentifier": [{"type": "doi", "id": "10.1016/0031-9422(91)83483-2"}], "id": "50|dli_resolver::d24a80546b6ed65e79eb45c1bf5b9fb9", "relatedPublications": 0, "date": [""], "title": ["\"A pterocarpan and two isoflavans from alfalfa\""], "relatedDatasets": 1}
203
{"typology": "publication", "publisher": ["Current biology : CB", "Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::dcbc3354b2d94db81e4c78b2b245db11", "id": {"identifier": "10.5061/dryad.qd19h", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::dcbc3354b2d94db81e4c78b2b245db11", "id": {"identifier": "10.5061/dryad.qd19h", "schema": "doi"}}, {"relationSemantic": "references", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::dcbc3354b2d94db81e4c78b2b245db11", "id": {"identifier": "10.5061/dryad.qd19h", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::bd9e2d659ef4b952e431afa298b15c5e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=23583553&result=sequence_release", "schema": "url"}}, {"relationSemantic": "unknown", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::4b5660c5ae8a002c733c368cbcd69c31", "id": {"identifier": "jx456275", "schema": "ncbi-n"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::898c127661817d632603ffc751f40838", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=23583553&result=coding_release", "schema": "url"}}, {"relationSemantic": "unknown", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::3ec4c61e93172897e2d3ce5bfa22f79f", "id": {"identifier": "jx456346", "schema": "ncbi-n"}}], "abstract": "None: Succulent water storage is a prominent feature among plants adapted to arid zones, but we know little about how succulence evolves and how it is integrated into organs already tasked with multiple functions. Increased volume in succulent leaves, for example, may result in longer transport distances between veins and the cells that they supply, which in turn could negatively impact photosynthesis. We quantified water storage in a group of 83 closely related species to examine the evolutionary dynamics of succulence and leaf venation. In most leaves, vein density decreased with increasing succulence, resulting in significant increases in the path length of water from veins to evaporative surfaces. The most succulent leaves, however, had a distinct three-dimensional (3D) venation pattern, which evolved 11-12 times within this small lineage, likely via multiple developmental pathways. 3D venation \"resets\" internal leaf distances, maintaining moderate vein density in extremely succulent tissues and suggesting that the evolution of extreme succulence is constrained by the need to maintain an efficient leaf hydraulic system. The repeated evolution of 3D venation decouples leaf water storage from hydraulic path length, facilitating the evolutionary exploration of novel phenotypic space.", "author": ["Edwards Erika J.", "Matthew, Ogburn R.", " matthew, Ogburn R.", "Edwards Erika J"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.cub.2013.03.029"}, {"type": "pbmid", "id": "23583553"}], "id": "50|dedup_wf_001::4e87f54274930b0a37122c1606a0036d", "relatedPublications": 0, "date": [""], "title": ["Repeated Origin of Three-Dimensional Leaf Venation Releases Constraints on the Evolution of Succulence in Plants"], "relatedDatasets": 8}
204
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::12ce346aec7ce3ea848d634bcf3ce2b9", "id": {"identifier": "3p66", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::54c676b0de58af5c765d1bb8226295a6", "id": {"identifier": "3p64", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::e567cc90665d319cb2a6be6f97a4bd4e", "id": {"identifier": "3p65", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::56cfeb33a88c64fe42ac17f87b0806d6", "id": {"identifier": "3p68", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::2f6f7706106c1e4b39e8a6446e2ec020", "id": {"identifier": "3p4z", "schema": "pdb"}}], "abstract": "Gold nanoparticles are useful in biomedical applications due to their distinct optical properties and high chemical stability. Reports of the biogenic formation of gold colloids from gold complexes has also led to an increased level of interest in the biomineralization of gold. However, the mechanism responsible for biomolecule-directed gold nanoparticle formation remains unclear due to the lack of structural information about biological systems and the fast kinetics of biomimetic chemical systems in solution. Here we show that intact single crystals of lysozyme can be used to study the time-dependent, protein-directed growth of gold nanoparticles. The protein crystals slow down the growth of the gold nanoparticles, allowing detailed kinetic studies to be carried out, and permit a three-dimensional structural characterization that would be difficult to achieve in solution. Furthermore, we show that additional chemical species can be used to fine-tune the growth rate of the gold nanoparticles.", "author": ["House Stephen", "Yang Limin", "Lu Yi", "Robinson Howard", "Robertson Ian M.", "Wang Zidong", "Tan Li Huey", "Zuo Jian-Min", "Zhang Jiong", "Wei Hui", "Hou Changjun", "Gao Yi-Gui", "Xing Hang"], "localIdentifier": [{"type": "doi", "id": "10.1038/nnano.2010.280"}], "id": "50|dli_resolver::cc17b4ad870689382e6b766be7a748d1", "relatedPublications": 0, "date": [""], "title": ["\"Time-dependent, protein-directed growth of gold nanoparticles within a single crystal of lysozyme\""], "relatedDatasets": 5}
205
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e6be795c52820aaebdecb70954dcd663", "id": {"identifier": "10.5517/ccws32t", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Ye Jinxing", "Li Wenjun", "Jin Zhichao", "Yang Juanjuan", "Liang Xinmiao"], "localIdentifier": [{"type": "doi", "id": "10.1021/ol102256v"}], "id": "50|dli_resolver::f7d535cb8c8a9e7b1d475d8c637cab33", "relatedPublications": 0, "date": [""], "title": ["\"Enantioselective Michael Reaction of α-Alkyl-β-keto Esters and Enones under Multifunctional Catalysis\""], "relatedDatasets": 1}
206
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d32ae601acf40ddb57fbc17efce815eb", "id": {"identifier": "10.5517/ccrt61s", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title compound, C15H14N2O4, has two crystallographically independent mol­ecules in the asymmetric unit. In both mol­ecules, the nitro and the two meth­oxy substituents are coplanar with the benzene rings to which they are attached. The benzene rings are nearly coplanar, with dihedral angles between the two benzene rings of 10.39 (8) and 5.95 (8)° in the two mol­ecules. The two independent mol­ecules in the asymmetric unit are rotated with respect to each other such that the dihedral angles between equivalent benzene rings are 49.11 (8) and 63.93 (8)°. In the crystal structure, inter­molecular C—H⋯O hydrogen-bond contacts and a weak C—H⋯π inter­action are observed.", "author": ["Gençaslan Mustafa", "Büyükgüngör Orhan", "Aye Malihe", "Akkurt Mehmet", "Jarrahpour Ali Asghar"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536808034193"}], "id": "50|dli_resolver::b23534816fae321409481ff56a9d36b9", "relatedPublications": 0, "date": [""], "title": ["\"3,4-Dimethoxy-N-(3-nitrobenzylidene)aniline\""], "relatedDatasets": 1}
207
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::413ce3408299e73b910623925862a09c", "id": {"identifier": "10.5517/ccnv4tf", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The structure of the title compound, [Co(C12H8N2)2(H2O)2](H2PO4)(NO3)·2H2O, is built up from layers of complex [Co(C12H8N2)2(H2O)2]2+ cations and phosphate units parallel to (010), delimiting a-axis tunnels in which the nitrate anions and the water mol­ecules are located. The mol­ecular structure is stabilized by inter­molecular hydrogen bonds and weak π–π stacking inter­actions.", "author": ["Abdelhak Jawher", "Namouchi Cherni Saoussen", "Driss Ahmed", "Zid Mohamed Faouzi"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536806023221"}], "id": "50|dli_resolver::bf7161b47802789a54478c87a9e75331", "relatedPublications": 0, "date": [""], "title": ["\"Diaquabis(1,10-phenanthroline-κ2N,N′)cobalt(II) dihydrogenphosphate nitrate dihydrate\""], "relatedDatasets": 1}
208
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "pubmed______", "datasourceId": ""}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::5c309247ccc11eff68eeb624221ad770", "id": {"identifier": "1c09", "schema": "pdb"}}], "abstract": "", "author": ["Ae, Burden", " Kang C.", "Mk, Eidsness", "Ka, Richie", "Dm, Kurtz", " Beard B", "Ra, Scott", "Et, Smith", " Ichiye T", " Min T"], "localIdentifier": [{"type": "pubmedid", "id": "10555962"}], "id": "50|dli_resolver::7ac7ab1808b1a4ae31352053596d0c98", "relatedPublications": 0, "date": [""], "title": ["Modulation of the redox potential of the [Fe(SCys)(4)] site in rubredoxin by the orientation of a peptide dipole."], "relatedDatasets": 1}
209
{"typology": "publication", "publisher": ["Pleiades Publishing Ltd"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e492676bb0c4756ed895515a67a4cada", "id": {"identifier": "10.5517/cc146fkb", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The new organic chloride salt incorporating an aromatic primary amine with a chiral functional group, (S)-α-methylbenzylammonium), has been synthesized by slow evaporation method at room temperature. The crystals are trigonal with non-centrosymmetric sp. gr. R3. The crystal packing is determined by N–H···Cl hydrogen bonds and C–H···π interactions between the aromatic rings of the organic moieties, resulting in supramolecular architecture.", "author": ["Mhiri T.", "Naїli H.", "Bataille T.", "Ben Salah A. M."], "localIdentifier": [{"type": "doi", "id": "10.1134/s1063774515070032"}], "id": "50|dli_resolver::55d2384e8066006b14de5ae79ee4f882", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis and crystal structure of a chiral aromatic amine chloride salt (C8H12N)Cl\""], "relatedDatasets": 1}
210
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::d227ad610a8b77e129420c28f956ecdf", "id": {"identifier": "10.3886/icpsr01247.v1", "schema": "url"}}], "abstract": "This paper reviews selected aspects of economic relations between the EU and Russia, focusing on the impact that the last two waves of EU enlargement have had on Russia, as well as the role of the euro in Russia. The analysis suggests that if EU enlargement has had any diversion effects on trade between the EU and Russia at all, they have been minimal, while robust growth in both the EU and Russia, as well as high oil and gas prices, has boosted trade. Likewise, FDI to and from Russia has increased, with the direct impact of enlargement again difficult to disentangle from other factors. Use of the euro by Russian residents and authorities in international transactions has increased, albeit at an uneven pace. While, in general, the US dollar remains the major foreign currency used by Russian residents, the euro has gained importance as an anchor and reserve currency in Russian exchange rate policies. This has happened in the context of an overall monetary policy strategy aiming at a gradual shift from an exchange rate-oriented monetary policy to inflation targeting. JEL Classification: F14, F15, F21, F36.", "author": ["Polanski, Zbigniew", "Winkler, Adalbert"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:dedup_wf_001::50887caeca95a726a2e284e34008a14f"}], "id": "50|dli_resolver::4dafbb4410ee23773d41e9397926cfda", "relatedPublications": 0, "date": [""], "title": ["Russia, EU enlargement and the euro"], "relatedDatasets": 1, "subject": [{"scheme": "keyword", "value": "international currencies."}, {"scheme": "keyword", "value": "F21"}, {"scheme": "keyword", "value": "Reservewährung"}, {"scheme": "keyword", "value": "F14"}, {"scheme": "keyword", "value": "F36"}, {"scheme": "keyword", "value": "EU-Staaten"}, {"scheme": "keyword", "value": "F15"}, {"scheme": "keyword", "value": "EU-Mitgliedschaft"}, {"scheme": "keyword", "value": "Euro"}, {"scheme": "keyword", "value": "foreign direct investment"}, {"scheme": "keyword", "value": "Auslandsinvestition"}, {"scheme": "keyword", "value": "Russland"}, {"scheme": "keyword", "value": "Internationale Wirtschaftsbeziehungen"}, {"scheme": "keyword", "value": "Economic integration, trade diversion, foreign direct investment, international currencies."}, {"scheme": "keyword", "value": "Handelseffekt"}, {"scheme": "keyword", "value": "ddc:330"}, {"scheme": "keyword", "value": "Economic integration"}, {"scheme": "keyword", "value": "trade diversion"}]}
211
{"typology": "publication", "publisher": ["The Journal of biological chemistry"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::00bfac49c6016a3fa2a109e936dfff27", "id": {"identifier": "j04064", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ec60f6f40a60814806bbf277c115f420", "id": {"identifier": "m33197", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::4cce95c16edc901469a24a04512e9433", "id": {"identifier": "aj519495", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::75109b72f6a6d43876de16af54f38192", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=14634001&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::494b87beae2c1e0b31e09ece975778fa", "id": {"identifier": "m10901", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::654bec7173e33e60843651e01e906673", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=14634001&result=sequence_release", "schema": "url"}}], "abstract": "None: Laminin-1 (alpha1beta1gamma1), a basement membrane (BM) constituent, has been associated with differentiation processes and also with malignant progression. In the intestinal tissue, the alpha1 chain is expressed and secreted in the subepithelial BM during the developmental period; in the adult rodent tissue, it is restricted to the BM of the dividing cells. To understand how laminin alpha1 chain expression is regulated, we cloned and characterized a 2-kb promoter region of the Lama1 mouse gene. Analysis of the promoter was conducted in the Caco2-TC7 intestinal epithelial cells by transient transfection of serially deleted and site-directed mutated promoter constructs, by electrophoretic mobility shift assays, and expression of selected transcription factors. We determined that a proximal region, which includes an Sp1-binding GC box and a Krüppel-like element, was important for the promoter activity. This region is conserved between the human and mouse genes. Interestingly, two Krüppel-like factors KLF4 and KLF5 exhibit opposing effects on the Lama1 promoter activity that are decreased and increased, respectively, in the intestinal epithelial cells. These data corroborate the complementary expression of KLF4 and KLF5 along the intestinal crypt-villus axis and the parallel expression of KLF5 and laminin alpha1 chain in the crypt region. Finally, we showed that glucocorticoids stimulate the promoter activity. This study is the first characterization of the Lama1 promoter; we identified regulatory elements that may account for the expression pattern of the endogenous protein in the mouse intestine.", "author": ["Klein Annick", "Lefebvre Olivier", "Bolcato-Bellemin Anne-Laure", "Annick Klein", "Simon-Assmann Patricia", "Yang, Vincent W.", "Michèle Kedinger", "Anne-Laure Bolcato-Bellemin", "Patricia Simon-Assmann", "Kedinger Michèle", "Piccinni, Silvia A.", "Olivier Lefebvre", "Piccinni Silvia A", "Yang Vincent W"], "localIdentifier": [{"type": "pmid", "id": "14634001"}, {"type": "pbmid", "id": "14634001"}], "id": "50|dedup_wf_001::6413eed4b50f1918f035b8d5e9b47f09", "relatedPublications": 0, "date": ["2003-11-21"], "title": ["Kruppel-like factors regulate the Lama1 gene encoding the laminin alpha1 chain."], "relatedDatasets": 6}
212
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::35348379be50461910d3e8770b0204f6", "id": {"identifier": "x52743", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::bf87ffa71b9acfbb634cc99b1b8b9e6e", "id": {"identifier": "x52744", "schema": "ena"}}], "abstract": "", "author": ["Adám, E.", "Kolar, C.", "Nagy, F.", "Schäfer, E."], "localIdentifier": [{"type": "pmid", "id": "7892242"}], "id": "50|pubmed______::6dc13c926e54ac7c97daadb786fa24dc", "relatedPublications": 0, "date": ["1995-03-01"], "title": ["Expression of tobacco genes for light-harvesting chlorophyll a/b binding proteins of photosystem II is controlled by two circadian oscillators in a developmentally regulated fashion."], "relatedDatasets": 2}
213
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::bdf87d54622c22490738f10530b16809", "id": {"identifier": "10.5517/ccqdbcs", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title compound, [Sn4(C7H7)8(CH3O)2(C7H7O3S)2O2], contains the well known structural unit of four organotin units linked by O-atom bridges into a ladder-type centrosymmetric tetra­mer. The SnIV atoms are coordinated in distorted SnC2O3 trigonal–bipyramidal geometries.", "author": ["Yang Jin", "Li Shun-Li", "Han Ting-Ting"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536807052804"}], "id": "50|dli_resolver::7401f7da7bb5777be4bd4523193faff7", "relatedPublications": 0, "date": [""], "title": ["\"Octabenzyldi-μ2-methanolato-di-μ3-oxido-bis(p-toluenesulfonato)tetratin(IV)\""], "relatedDatasets": 1}
214
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::15af7cbca64e5e2bcece0cbb656e9fac", "id": {"identifier": "10.5517/cc5h5jb", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Iminium ions derived from (S)-5-phenylmorpholin-2-one 1 undergo diastereoselective Strecker reactions using copper(I) cyanide and anhydrous hydrochloric acid; the major adducts may be degraded to D-α-amino acids.", "author": ["Drew Michael G. B.", "Vickers Richard J.", "Harwood Laurence M.", "Hughes David J."], "localIdentifier": [{"type": "doi", "id": "10.1039/b104052a"}], "id": "50|dli_resolver::2f3fd1357b5919e58614012e498e3666", "relatedPublications": 0, "date": [""], "title": ["\"Diastereocontrolled Strecker reaction using (S)-5-phenylmorpholin-2-one\""], "relatedDatasets": 1}
215
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::36215013366896844c71fe74519fddd1", "id": {"identifier": "10.6084/m9.figshare.c.3635420_d1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::136da3d639d67e113ad4c353b7840cc4", "id": {"identifier": "10.6084/m9.figshare.c.3635420_d1.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c2960f4dd28f18ee0cc2f5408674c928", "id": {"identifier": "10.6084/m9.figshare.c.3635420", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::cd1a258f17210a6940d88c5538bc3169", "id": {"identifier": "10.6084/m9.figshare.c.3635420.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Background#R##N#Glioblastoma is a highly lethal neoplasm that frequently recurs locally after radiotherapy, and most of these recurrences originate from near the irradiated target field. In the present study, we identified the effects of radiation on glioma invasion and p53, TIMP-2, and MMP-2 expression through in vitro and in vivo experiments.", "author": ["Li Song-Yuan", "Jang Woo-Youl", "Wen Min", "Li Chun-Hao", "Lim Sa-Hoe", "Jung Shin", "Park In-Ho", "Pei Jian", "Ryu Hyang-Hwa"], "localIdentifier": [{"type": "doi", "id": "10.1186/s13014-015-0475-8"}], "id": "50|dli_resolver::ecb6473143d3ae8f33608a09de413aad", "relatedPublications": 0, "date": [""], "title": ["\"Sublethal dose of irradiation enhances invasion of malignant glioma cells through p53-MMP 2 pathway in U87MG mouse brain tumor model\""], "relatedDatasets": 4}
216
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5d608c7cc01c15bf91dc6ee0fe8003ad", "id": {"identifier": "10.5517/cc8d04s", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c5bbf8a276acfa1c74013c814ffb65e8", "id": {"identifier": "10.5517/cc8d05t", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Novel dinuclear cyclometallated palladium complexes [{Pd(µ-NCO)(C⁁N)}2], containing asymmetric imidato –NCO– bridging units have been synthesised [C⁁N = 7,8-benzoquinolyl; –NCO–#R##N##TAB##TAB##TAB##TAB#= succinimidate (1c), phthalimidate (2c) or maleimidate (3c)]. The reaction of these complexes, and the previously reported analogous imidate precursors containing a phenylazophenyl (1a–3a) or 2-pyridylphenyl (1b–3b) backbone, with tertiary phosphines provides novel mononuclear N-bonded imidate derivatives of the general formula [Pd(C⁁N)(imidate)(L)]#R##N##TAB##TAB##TAB##TAB#[L = PPh3, P(4-F-C6H4)3 or P(4-MeO-C6H4)3]. The single crystal structures of [Pd(azb)(phthalimidate)(P(4-MeO-C6H4)3)]#R##N##TAB##TAB##TAB##TAB#(9a) and [Pd(bzq)(phthalimidate)(PPh3)]#R##N##TAB##TAB##TAB##TAB#(7c) have been established. Dinuclear complexes (1a–3a, 1b–3b, 1c–3c) demonstrate outstanding thermal stability in the solid-state, as shown by thermoanalytical techniques. A marked influence of bridging imidate groups on the initial decomposition temperature is observed. The dinuclear and mononuclear derivatives are shown to be active catalysts/precatalysts for the Suzuki–Miyaura cross-coupling reactions of aryl bromides with aryl boronic acids, and the Sonogashira reactions of aryl halides with phenyl acetylene (in the presence and absence of Cu(I) salts). The conversions appear to be dependent, to some extent, on the type of imidate ligand, suggesting a role for these pseudohalides in the catalytic cycle in both cross-coupling processes. Lower catalyst loadings in ‘copper-free’ Sonogashira cross-couplings favour higher turnover frequencies. We have further determined that these catalysts may be recycled using a poly(ethylene oxide)#R##N##TAB##TAB##TAB##TAB#(PEO)/methanol solvent medium in Suzuki–Miyaura cross-coupling. Once the reaction is complete, product extraction into a hexane/diethyl ether mixture (1 ∶ 1, v/v) gives cross-coupled products in good yields (with purity > 95%). The polar phase can then be re-used several times without appreciable loss of catalytic activity.", "author": ["Pérez José", "López Gregorio", "Lee Adam F.", "García Luis", "Pérez Eduardo", "Serrano José Luis", "Kapdi Anant R.", "Sánchez Gregorio", "Fairlamb Ian J. S."], "localIdentifier": [{"type": "doi", "id": "10.1039/b413886d"}], "id": "50|dli_resolver::e5c5bb94d6e94f31987c5fd2df894a0a", "relatedPublications": 0, "date": [""], "title": ["\"Mono- and binuclear cyclometallated palladium(ii) complexes containing bridging (N,O-) and terminal (N-) imidate ligands: Air stable, thermally robust and recyclable catalysts for cross-coupling processes\""], "relatedDatasets": 2}
217
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7caaa9df2f345ead15ece2fea3b3b1a0", "id": {"identifier": "m86713", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::f21e45bb3f1a286bc700b7b7c05c0f75", "id": {"identifier": "u12984", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6dee7839fe79ca92d54b5a9d2efab72f", "id": {"identifier": "l11009", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ee2b81ee0059ebe93a3e81d800ea084a", "id": {"identifier": "x61239", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::07a9e2a14968e9fc84bf2aa207ec8ddf", "id": {"identifier": "z21953", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::cd6ea30af982c814f0e0bdecc6b3d5d2", "id": {"identifier": "x61996", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::92a960ae4eaf6f56fe9cdf55e13ff020", "id": {"identifier": "s61968", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::bcc1c258196fe6cdecf1500ae519f025", "id": {"identifier": "u04846", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::acd61e1a432858eb30105918040376a2", "id": {"identifier": "x76688", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::20daaa36b33e505106c7377761f80313", "id": {"identifier": "x16944", "schema": "ena"}}], "abstract": "", "author": ["Ga, Zavyalova", "Da, Chapman", "Tv, Chernovskaya", "Av, Karlyshev", "Vp, Zavyalov", "Iv, Dudich", "Macintyre, S.", "Am, Vasiliev", "Av, Zavialov", "Vm, Abramov"], "localIdentifier": [{"type": "pmid", "id": "10198004"}], "id": "50|pubmed______::eaa3acc913fcbf1fe7855c2a2e8be727", "relatedPublications": 0, "date": ["1999-04-01"], "title": ["Structural and functional significance of the FGL sequence of the periplasmic chaperone Caf1M of Yersinia pestis."], "relatedDatasets": 10}
218
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dedup_wf_001::477c184f727159865f2d150552930cab", "id": {"identifier": "af482758", "schema": "genbank"}}], "abstract": "", "title": ["Modified vaccinia virus Ankara can activate NF-κB transcription factors through a double-stranded RNA-activated protein kinase (PKR)-dependent pathway during the early phase of virus replication"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.virol.2009.06.012"}], "id": "50|elsevier____::ce830e28ae90c2abeaefafe8bfe5bd70", "relatedPublications": 0, "date": ["2009"], "relatedDatasets": 2}
219
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c7ad1059a7b3b9649608f77b459277d6", "id": {"identifier": "10.5517/ccqfrrm", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b6bdb3154b77428edb153493aa01963b", "id": {"identifier": "10.5517/ccqfrpk", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e7f1223b46c2826c6aaf7621ec42e921", "id": {"identifier": "10.5517/ccqfrql", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Porosity and chirality are two of the most important properties for materials in the chemical and pharmaceutical industry. Inorganic microporous materials such as zeolites have been widely used in ion-exchange, selective sorption/separation and catalytic processes. The pore size and shape in zeolites play important roles for specific applications(1-3). Chiral inorganic microporous materials are particularly desirable with respect to their possible use in enantioselective sorption, separation and catalysis(4). At present, among the 179 zeolite framework types reported, only three exhibit chiral frameworks(5-7). Synthesizing enantiopure, porous tetrahedral framework structures represents a great challenge for chemists. Here, we report the silicogermanates SU-32 (polymorph A), SU-15 (polymorph B) (SU, Stockholm University) and a hypothetical polymorph C, all built by different stacking of a novel building layer. Whereas polymorphs B and C are achiral, each crystal of polymorph A exhibits only one hand and has an intrinsically chiral zeolite structure. SU-15 and SU-32 are thermally stable on calcination.", "author": ["Shi Lei", "Kritikos Mikael", "Zou Xiaodong", "Tang Liqiu", "Yue Huijuan", "Mink Janos", "Ojuva Arto", "Lee Bao-Lin", "Bell Robert G.", "Bacsik Zoltán", "Bonneau Charlotte", "Sun Junliang"], "localIdentifier": [{"type": "doi", "id": "10.1038/nmat2169"}], "id": "50|dli_resolver::db59ed85c182e0e1ad8c2b9329470f90", "relatedPublications": 0, "date": [""], "title": ["\"A zeolite family with chiral and achiral structures built from the same building layer\""], "relatedDatasets": 3}
220
{"typology": "publication", "publisher": ["The Royal Society"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::564daf19d30d31bd8aee2d04837ca89d", "id": {"identifier": "10.6084/m9.figshare.c.3876088.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::860105635c3298cad80ae27d81e0da0a", "id": {"identifier": "10.6084/m9.figshare.c.3876088", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Weiss Daniel J.", "Cameron Ewan", "Smith David L.", "Bhatt Samir", "Flaxman Seth R.", "Gething Peter W."], "localIdentifier": [{"type": "doi", "id": "10.1098/rsif.2017.0520"}], "id": "50|dli_resolver::a9d87e25dae28e659996b4774dfc6771", "relatedPublications": 0, "date": [""], "title": ["\"Improved prediction accuracy for disease risk mapping using Gaussian process stacked generalization\""], "relatedDatasets": 2}
221
{"typology": "publication", "publisher": ["SAGE Publications"], "doiRels": [{"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ee71f57da464ce1dd738baaacf6bbb2b", "id": {"identifier": "10.3886/icpsr06036.v1", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::65b324112e20e65fe1b43413eb686cf0", "id": {"identifier": "10.3886/icpsr06036", "schema": "doi"}}, {"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ee71f57da464ce1dd738baaacf6bbb2b", "id": {"identifier": "10.3886/icpsr06036.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "This article addresses approaches to working with families where violence is the norm. As an extremely sensitive subject and potentially volatile situation in therapy, it is important to understand the limitations and risks involved in treating families in which there is a history of violence.", "author": ["Houston, Irene S.", "Houston Irene S.", "Rotter, Joseph C.", "Rotter Joseph C."], "localIdentifier": [{"type": "doi", "id": "10.1177/1066480799071009"}], "id": "50|dedup_wf_001::acf218acf6f60497dd82daa2d70a6aed", "relatedPublications": 0, "date": [""], "title": ["Treating Family Violence: Risks and Limitations"], "relatedDatasets": 3}
222
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::89d50cd89dc9da2e4bbb974e220e4f7c", "id": {"identifier": "10.6084/m9.figshare.c.3628964_d1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4214e99b8a3ddde99c2f27cb3fa80cd8", "id": {"identifier": "10.6084/m9.figshare.c.3628964", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::8bf198d31d750354cf768945f98a9992", "id": {"identifier": "10.6084/m9.figshare.c.3628964_d3.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::3fd3419592c6e42747084e6f9bcb137a", "id": {"identifier": "10.6084/m9.figshare.c.3628964_d2", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::d734ad8b10b7552b7dd643d4253139be", "id": {"identifier": "10.6084/m9.figshare.c.3628964.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::9f5c2f6ec282b94a7fe2b950be080998", "id": {"identifier": "10.6084/m9.figshare.c.3628964_d2.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::631f1b6dc6be534021e3e9cf0d2e7397", "id": {"identifier": "10.6084/m9.figshare.c.3628964_d1.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::58166d577c3860c395aa10cdebf1d81d", "id": {"identifier": "10.6084/m9.figshare.c.3628964_d3", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Background#R##N#Attention deficit hyperactivity disorder (ADHD) is a prevalent and multifactorial neuropsychiatric disorder in the human population worldwide. Complex etiology and clinical heterogeneity have challenged the research, diagnostics and treatment of the disease. Hyperactive and impulsive behaviour has also been observed in dogs, and they could offer a physiologically relevant model for human ADHD. As a part of our ongoing study to understand the molecular etiology of canine anxiety traits, this study was aimed to pilot an approach to identify metabolic biomarkers in canine ADHD-like behaviours for research, diagnostics and treatment purposes.", "author": ["Lehtonen Marko", "Puurunen Jenni", "Sulkama Sini", "Araujo Cesar", "Lohi Hannes", "Tiira Katriina", "Hanhineva Kati"], "localIdentifier": [{"type": "doi", "id": "10.1186/s12993-016-0112-1"}], "id": "50|dli_resolver::33d4a72bfe5dfbdc2783651f48c6e826", "relatedPublications": 0, "date": [""], "title": ["\"A non-targeted metabolite profiling pilot study suggests that tryptophan and lipid metabolisms are linked with ADHD-like behaviours in dogs\""], "relatedDatasets": 8}
223
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::aa99a11e3a64965692f3fa87c8ecea20", "id": {"identifier": "m73218", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::3eb96653c45d47e0b8fc7bc2b11f6179", "id": {"identifier": "af030878", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::baabb627d2f9d3b540d65c027ef31d08", "id": {"identifier": "ef206691", "schema": "ncbi-n"}}], "abstract": "", "title": ["A novel member of the family"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.virusres.2011.03.019"}], "id": "50|elsevier____::8d5900e84b1078c12814cde91fda5766", "relatedPublications": 0, "date": ["2011"], "relatedDatasets": 3}
224
{"typology": "publication", "publisher": ["The Journal of general virology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::850c61cecee051d6af2e459ef4dc36ee", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=2838575&result=sequence_release", "schema": "url"}}], "abstract": "None: Five cosmids containing inserts that comprise the complete genome of the multicapsid nuclear polyhedrosis virus of Orgyia pseudotsugata were mapped with four restriction enzymes (Bg/II, ClaI, SstI, XhoI). From these cosmid maps, composite maps of the complete genome were constructed for each restriction enzyme. A region containing repeats of the sequence GGC downstream of the polyhedrin gene was used to probe the genome. It cross-hybridized with a region which, upon sequence analysis, was found to be a highly repetitive GC-rich region of nearly 500 nucleotides. The two GC-rich regions appeared to be evolutionarily unrelated.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "2838575"}], "author": ["Nesson M H", "Rohrmann G F", "Chen D D", "Beaudreau G S"], "relatedPublications": 0, "id": "50|r3d100010527::c27c28a48db891b0877113049e2d67b6", "title": ["The genome of the multicapsid baculovirus of Orgyia pseudotsugata: restriction map and analysis of two sets of GC-rich repeated sequences."], "relatedDatasets": 1}
225
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::fef8e2b00d745bb0620738e85395717f", "id": {"identifier": "10.5517/cc8ksj3", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title compound, [Nd(C6H4NO2)3(C12H8N2)2(H2O)2]·3H2O, consists of a mononuclear [Nd(C6H4NO2)3(C12H8N2)2(H2O)2] mol­ecule and three uncoordinated water mol­ecules. The NdIII atom is nine-coordinate through coordination by the O atoms of three nicotinate groups, four N atoms of two phenanthroline mol­ecules and two water mol­ecules in a tricapped trigonal prismatic coordination geometry. The mononuclear mol­ecule and solvent water mol­ecule are linked by hydrogen bonds to form a layer framework.", "author": ["Liu Fu-Chen", "Wang Xiu-Li"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536804025383"}], "id": "50|dli_resolver::984bed1c8b93d822b7e578529feab74e", "relatedPublications": 0, "date": [""], "title": ["\"Diaquatris(nicotinato-κO)bis(1,10-phenanthroline-κ2N,N′)neodymium(III) trihydrate\""], "relatedDatasets": 1}
226
{"typology": "publication", "publisher": ["Genome announcements"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3dedf68774437d168d5e3810cf7414af", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24558235&result=study", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::19a014920343ebe28fe5adf6072be009", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24558235&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f50383819a07e4087f432432b3218686", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24558235&result=read_study", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::f2fed5a4f08745bba090a18de787cbb0", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24558235&result=sequence_release", "schema": "url"}}], "abstract": "None: Burkholderia caribensis MBA4 was isolated from soil for its ability to utilize 2-haloacid. An inducible haloacid operon, encoding a dehalogenase and a permease, is mainly responsible for the biotransformation. Here, we report the draft genome sequence of this strain.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1128/genomea.00047-14"}, {"type": "pbmid", "id": "24558235"}], "author": ["Tsang Jimmy S H", "Pan Yanling", "Kong Ka Fai"], "relatedPublications": 0, "id": "50|r3d100010527::2a2ec26ef4f705ada03fbb9387841de0", "title": ["Draft Genome Sequence of the Haloacid-Degrading Burkholderia caribensis Strain MBA4."], "relatedDatasets": 4}
227
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5312c2784cee76c0711b53f139c752b0", "id": {"identifier": "10.5517/ccdc.csd.cc1lrz4g", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::37e59aac5b3852f4b30761fa8303f8f1", "id": {"identifier": "10.5517/ccdc.csd.cc1lrz5h", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ba4c52c172f199fac3fc2839a06494ab", "id": {"identifier": "10.5517/ccdc.csd.cc1lrz3f", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Three new mononuclear cobalt(III) complexes, [Co(L 1 ) 2 ]ClO 4 ·2H 2 O ( 1 ) {HL 1  = 2((2(2-hydroxyethylamino)ethylimino)methyl)-6-methoxyphenol}, [Co(L 2 )(acna)(N 3 )] ( 2 ) {HL 2  = 2((2(2-hydroxyethylamino)ethylimino)methyl)-6-ethoxyphenol, Hacna = 2-acetyl-1-naphthol} and [Co(L 3 )(bzan)(N 3 )] ( 3 ) {HL 3  = 1((2(diethylamino)ethylimino)methyl)naphthalen-2-ol, Hbzan = 1-benzoylacetone} were prepared and characterized by elemental and spectral analysis. The structures of all complexes were confirmed by single crystal X-ray analyses. Weak noncovalent interactions lead to the formation of extended supra-molecular assemblies in them. Both complexes  2  and  3  may be used as moderate catalyst for the oxidation of 2-aminophenol to 2-aminophenoxazine-3-one.", "author": ["Ghosh Kousik", "Chattopadhyay Shouvik", "Harms Klaus"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.poly.2016.10.027"}], "id": "50|dli_resolver::adca541cd69b20734eebbb19ac68f2e8", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis, characterization and phenoxazinone synthase mimicking activity of cobalt(III) Schiff base complexes\""], "relatedDatasets": 3}
228
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9a94f8dc3c6c2ed7e8be8c09f972586c", "id": {"identifier": "10.5517/ccznr1d", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::93ba4da8f854b5cac1cf957db991c4e6", "id": {"identifier": "10.5517/ccznr3g", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0f0ab1207cfc7fef7c95edac90c6867e", "id": {"identifier": "10.5517/ccznr2f", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Two novel N-phosphonoethylcarboxypyridines were prepared via nucleophilic substitution of two carboxypyridines (namely, 4-carboxypyridine, or isonicotinic acid, and 3-carboxypyridine, or nicotinic acid) with diethyl-2-bromoethylphosphonate in water. Two zirconium derivatives of these acids were obtained under mild solvothermal conditions, and their structures were solved from powder X-ray diffraction (PXRD) data. The zirconium derivative containing the isonicotinic moiety (1), with formula ZrF2(HF)(O3PCH2CH2NC5H4CO2), has a one-dimensional (1D) chain structure in which the carboxypyridine groups are placed in the external part of the inorganic chain constituted of zirconium octahedra and phosphonic tetrahedra, whereas the zirconium derivative containing the nicotinic moiety (2), with formula ZrF2(O3PCH2CH2NC5H4CO2), has a hybrid layered structure in which zirconium octhaedra and phosphorus tetrahedra form a new structural archetype, with a C–O group coordinating the zirconium atoms. 1 underwent a high tem...", "author": ["Sassi Paola", "Taddei Marco", "Geppi Marco", "Costantino Ferdinando"], "localIdentifier": [{"type": "doi", "id": "10.1021/cg301042y"}], "id": "50|dli_resolver::e836fb0e98592ed1221dad089c9d769f", "relatedPublications": 0, "date": [""], "title": ["\"Multitechnique Experimental Insight on an Unusual Crystal-to-Crystal High Temperature Solid State Reaction in Zirconium Carboxypyridinephosphonates: From One-Dimensional Chains to Two-Dimensional Hybrid Layers Through HF Elimination\""], "relatedDatasets": 3}
229
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::222ea22d7cb38ddaf3658aa5ca8ab188", "id": {"identifier": "10.5517/ccdc.csd.cc1m6fx5", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b36e48ce7ef5fdea4b8d12784759b1b9", "id": {"identifier": "10.5517/ccdc.csd.cc1m6fy6", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Isoliquiritigenin (ISL) is an abundant dietary flavonoid with numerous pharmacological activities. However, isoliquiritigenin is poorly absorbed by the body which limits its clinical usage. Cocrystallization has attracted attention recently as a means of modifying unfavourable physicochemical properties of compounds. Herein, we report the synthesis of two new cocrystals of ISL: isoliquiritigenin–nicotinamide (ISL–NIC) and isoliquiritigenin–isonicotinamide (ISL–INM). To our knowledge, this is the first report of flavonoid cocrystals from a compound with a chalcone structure. The cocrystals are characterized by various techniques, including powder X-ray diffraction, Raman spectroscopy, differential scanning calorimetry and thermogravimetric analysis. Through single-crystal X-ray diffraction analysis, we investigate the crystal packing and intermolecular interactions of ISL cocrystals. The binary phase diagrams of ISL and the conformers are constructed for understanding the thermal behaviors of physical mixtures upon heating. Pharmacokinetic studies show that both of the ISL cocrystals outperform the pure form of ISL and its monohydrate with increases in bioavailabilities.", "author": ["Cai Baochang", "Cai Ting", "Huang Yuting", "Ruan Sida", "Xu Jia", "Chi Zongliang", "Qin Kunming"], "localIdentifier": [{"type": "doi", "id": "10.1039/c6ce01809b"}], "id": "50|dli_resolver::c5652fe7307c44763a7e5a6e3b73f885", "relatedPublications": 0, "date": [""], "title": ["\"Cocrystals of isoliquiritigenin with enhanced pharmacokinetic performance\""], "relatedDatasets": 2}
230
{"typology": "publication", "publisher": ["Journal of immunology (Baltimore, Md. : 1950)"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::d0b73ff37a235199c8a64c9ec897dd9b", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8376769&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::150898bc645c7b189acd3f6e3d27a7b9", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8376769&result=coding_release", "schema": "url"}}], "abstract": "None: The primary repertoire of B and T cells is established by V(D)J recombination. Two closely linked genes, RAG-1 and RAG-2, are essential for this process, and have been identified in mice, humans, and chickens. To study lymphocyte development in Xenopus laevis, we have characterized RAG-1 and RAG-2 in this species and examined their patterns of expression. Degenerate oligonucleotides, based on the known highly conserved RAG-1 sequences, were used to amplify, by the polymerase chain reaction, a segment of Xenopus RAG-1 from genomic DNA. A product of expected size was obtained and used to identify a genomic clone that contained the complete coding region of RAG-1 (1045 codons), and approximately the 3'-half of the coding region of RAG-2. The coding regions of RAG-1 and RAG-2 each lie on a single exon, are in opposite transcriptional orientation, and are separated by approximately 6 kb. The sequence of the remainder of RAG-2 was determined by PCR amplification of genomic DNA, with primers based on sequence analysis of RAG-2 cDNA clones. The predicted Xenopus RAG-1 protein is 71% identical in amino acid sequence to the sequences of each of the mouse, human, and chicken proteins; from position 392 to 1012 the identity is 88%. The coding region of Xenopus RAG-2 (520 codons) is somewhat less conserved among the different species. Tissue-specific expression of Xenopus RAG-1 and RAG-2 was examined both by Northern blotting and by a reverse transcription-polymerase chain reaction assay. In juvenile frogs, the highest levels of RAG-1 and RAG-2 expression were observed in the thymus, with lower levels in liver and spleen, and even lower levels in the kidneys. In adults, the thymus and bone marrow were found to be the principal sites of expression of both genes. RAG-2, but not RAG-1, was expressed in oocytes.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "8376769"}], "author": ["Greenhalgh P", "Steiner L A", "Olesen C E"], "relatedPublications": 0, "id": "50|r3d100010527::825fba0069bce0a0928b8caae4b05d04", "title": ["Characterization and expression of recombination activating genes (RAG-1 and RAG-2) in Xenopus laevis."], "relatedDatasets": 2}
231
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "documents", "collectedFrom": "ICPSR", "dnetId": "60|dedup_wf_001::c37868a1e4c5f9d2238a75272495e0c7", "id": {"identifier": "10.3886/icpsr21661.v3", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::bf6a3596fc396be76c43941bdc1a199e", "id": {"identifier": "10.3886/icpsr21661.v1", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::82f06bb5f0e9cfcd54223110657d997a", "id": {"identifier": "10.3886/icpsr21661", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::28ca16353d24a0fc503a407926e48bcb", "id": {"identifier": "10.3886/icpsr21661.v2", "schema": "doi"}}, {"relationSemantic": "cites", "collectedFrom": "ICPSR", "dnetId": "60|dedup_wf_001::c37868a1e4c5f9d2238a75272495e0c7", "id": {"identifier": "10.3886/icpsr21661.v3", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "In September 1999, over 3000 Australian students in 115 schools representing all schooling sectors participated in the Australian component of the IEA Civic Education study. In this paper, the focus in particular is on Australian students’ democratic values and on their attitudes towards participation and social action. The results suggest that while Australian students have a well-developed set of democratic values, they adopt a passive rather than an active style of engaging in conventional citizenship activities. They will participate formally through voting and they will pursue issues where they see some community benefit but they do not see themselves exercising an effective presence in the formal political system. The implications of these results are discussed in relation to the characteristics of citizens needed in a democratic society and the role that schools can play in adopting curriculum and pedagogy that will engage young people in the development of their civic knowledge.", "author": ["Mellor, Suzanne", "Kennedy Kerry, J.", "Mellor Suzanne", "Kennedy, Kerry J."], "localIdentifier": [{"type": "doi", "id": "10.1016/j.ijer.2004.07.002"}], "id": "50|dedup_wf_001::5a8f918b22db473f7578e76c0c505b94", "relatedPublications": 0, "date": [""], "title": ["Australian Students’ democratic values and attitudes towards participation: indicators from the IEA civic education study"], "relatedDatasets": 5}
232
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::50b6cc168366edfdcb12682f3444611f", "id": {"identifier": "af183408", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::a0f6e0f729478ec61f82497583fb4bdc", "id": {"identifier": "af265211", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::f9b6c95c3c33791c93326ceda93797d3", "id": {"identifier": "aj277403", "schema": "ncbi-n"}}], "abstract": "", "title": ["Unique features of"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.micres.2009.09.004"}], "id": "50|elsevier____::caf3cbf7f2309e1e5618339359a6001a", "relatedPublications": 0, "date": ["2010"], "relatedDatasets": 3}
233
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::cbba8463186187a6a4af337ce2efc811", "id": {"identifier": "10.6073/aa/knb-lter-cdr.62015.113", "schema": "url"}}], "abstract": "La matière organique (MO) remplit de multiples fonctions dans les systèmes agro-pastoraux ouest-africains. Or l'offre en ressource organique y diminue depuis plusieurs décennies. Afin d'estimer la viabilité d'un terroir agro-pastoral dans le sud du Sénégal, les bilans (stocks et flux) du carbone (C), de l'azote (N) et du phosphore (P ; assimilable seulement dans le sol et noté POD) y ont donc été établis.<br />Le terroir choisi était organisé en auréoles, avec une intensification croissante des pratiques de la périphérie (auréole de brousse) vers le village (champs de case).<br />Les stocks dans le système sol-plante étaient de 54,7 tC, 2,63 tN et 43,5 kgP ha-1 dans les jachères âgées, soit des croîts respectifs de 97, 29 et 251 % par rapport aux cultures de brousse (l'augmentation ayant lieu essentiellement dans la biomasse végétale). Les stocks mesurés dans le sol des champs de case étaient supérieurs à ceux des cultures de brousse, essentiellement dans l'horizon 0-10 cm. Cependant, la faible réponse globale des stocks de carbone des sols sableux à la jachère et à la fumure ne peut être interprétée qu'en réévaluant le rôle bio-thermodynamique joué par le carbone dans l'intégrité des agroécosystèmes locaux.<br />Les stocks moyens sur le terroir contrôlables par l'homme furent estimés à 29,7 tC, 1,52 tN and 28,6 kgP ha-1 en 1997. Le carbone était stocké surtout dans le sol. Elevage, récoltes et collecte de bois ont représenté respectivement 59, 27 et 14 % des prélèvements de carbone dans le terroir. Grâce à eux, des flux importants de carbone ont été établis vers les champs de case (3,8 tC ha-1 an-1), et les pertes minérales globales ont été estimées à 4 kgN et 1 kgP ha-1 an-1. Le terroir était donc proche de l'équilibre minéral.<br />Mais selon la dynamique démographique actuelle, la perte de carbone pourrait atteindre 0,38 tC ha-1 an-1, et la demande en carbone doubler durant les 30 prochaines années. Sans intensification des pratiques, ceci remettrait en cause la viabilité du système.", "author": ["Manlay, Raphaël"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:dedup_wf_001::df61544879f5b6c57d1f175ec56b90d6"}], "id": "50|dli_resolver::f1954df0abf628563a5a3fde4793dc50", "relatedPublications": 0, "date": [""], "title": ["Dynamique de la matière organique à l'échelle d'un terroir agro-pastoral de savane ouest-africaine (Sud-Sénégal)"], "relatedDatasets": 1, "subject": [{"scheme": "keyword", "value": "PHOSPHORE"}, {"scheme": "keyword", "value": "MATIERE ORGANIQUE"}, {"scheme": "keyword", "value": "Carbone"}, {"scheme": "keyword", "value": "STOCK ORGANIQUE"}, {"scheme": "keyword", "value": "PARCELLE"}, {"scheme": "keyword", "value": "TRANSFERT D'ECHELLE"}, {"scheme": "keyword", "value": "TERROIR"}, {"scheme": "keyword", "value": "JACHERE"}, {"scheme": "keyword", "value": "Elevage"}, {"scheme": "keyword", "value": "Plante"}, {"scheme": "keyword", "value": "AZOTE"}, {"scheme": "keyword", "value": "Biomasse"}, {"scheme": "keyword", "value": "EVOLUTION DES SOLS SOUS CULTURE"}, {"scheme": "keyword", "value": "Racine"}, {"scheme": "keyword", "value": "Fertilité"}, {"scheme": "keyword", "value": "Terroir agro-pastoral"}, {"scheme": "keyword", "value": "Jachère"}, {"scheme": "keyword", "value": "SYSTEME DE PRODUCTION"}, {"scheme": "keyword", "value": "Matière organique"}, {"scheme": "keyword", "value": "Phosphore"}, {"scheme": "keyword", "value": "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences"}, {"scheme": "keyword", "value": "Flux"}, {"scheme": "keyword", "value": "Azote"}, {"scheme": "keyword", "value": "FERTILITE DU SOL"}, {"scheme": "keyword", "value": "AGROPASTORALISME"}, {"scheme": "keyword", "value": "SAVANE"}, {"scheme": "keyword", "value": "Fumier"}, {"scheme": "keyword", "value": "FUMURE"}, {"scheme": "keyword", "value": "VILLAGE"}, {"scheme": "keyword", "value": "Sol"}, {"scheme": "keyword", "value": "SOL"}, {"scheme": "keyword", "value": "CYCLE CULTURAL"}, {"scheme": "keyword", "value": "Tropiques"}, {"scheme": "keyword", "value": "Sénégal"}, {"scheme": "keyword", "value": "BIOMASSE"}, {"scheme": "keyword", "value": "CARBONE"}, {"scheme": "keyword", "value": "Stock"}, {"scheme": "keyword", "value": "DEVELOPPEMENT DURABLE"}]}
234
{"typology": "publication", "publisher": ["American Physical Society (APS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::caada02397480254c492b15bea19f2ac", "id": {"identifier": "10.17182/hepdata.25980", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::da2024fced93abc6fbd497c36ad0c0d4", "id": {"identifier": "10.17182/hepdata.25980.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Negative pion spectra emitted in the reactions of 775 MeV/nucleon [sup 139]La+[sup 12]C and [sup 139]La+[sup 139]La reactions have been measured in coincidence with the projectile fragments using the HISS spectrometer at the Bevalac. Prominent peaks near the beam velocity were observed in the pion spectra. Position and widths of the peaks were studied as a function of the sum charge'' of projectile fragments which is a good measure of impact parameter; the smaller the sum charge,'' the smaller the impact parameter. The peak position down shifts with the smaller sum charge.'' The pion peak is wider in the transverse than in the longitudinal direction, possibly mirroring the velocity dispersions of projectile fragments in the early stage of reactions.", "author": ["Shida Y.", "Crowe K. M.", "Kobayashi T.", "Yamakawa O.", "Bistirlich J. A.", "Y-W, Xu", "Tanihata I.", "Rasmussen J. O.", "Humanic T. J.", "Justice M.", "Hashimoto O.", "Nagamiya S.", "Nakayama K.", "Yoshikawa N.", "Hamagaki H."], "localIdentifier": [{"type": "doi", "id": "10.1103/physrevc.49.420"}], "id": "50|dli_resolver::4b698a763235ff11e78b15c644f044b3", "relatedPublications": 0, "date": [""], "title": ["\"Projectile rapidity pions in 775 MeV/nucleonLa139+12C andLa139+139La reactions\""], "relatedDatasets": 2}
235
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::cf10e388f1811a412d46aa0125638ac5", "id": {"identifier": "10.5517/cc9lv7y", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The title crystal structure, [Cu(NCS)2(C7H8N4)2]n, comprises one-dimensional chains propagating in the a-axis direction. The CuII atoms, which have crystallographic 2/m site symmetry, are coordinated by six N atoms from four 1,1′-methyl­enedi-1H-imidazole ligands and two NCS− anions, giving a slightly disorted octa­hedral coordination geometry. The 1,1′-methyl­enedi-1H-imidazole ligand adopts a bis-monodentate bridging mode, linking the CuII atoms.", "author": ["Dong Gui-Ying", "Cui Guang-Hua", "Ribas Joan"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536806004843"}], "id": "50|dli_resolver::548d07b9eb4d9389318c63516ec9faa5", "relatedPublications": 0, "date": [""], "title": ["\"catena-Polybis(isothiocyanato-κN)copper(II)bis(μ-1,1′-methylenedi-1H-imidazole-κN3:κN3′)\""], "relatedDatasets": 1}
236
{"typology": "publication", "publisher": ["PeerJ"], "doiRels": [{"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::8d4dcbc9233468f0216b17f0962816cb", "id": {"identifier": "10.7287/peerj.1025v0.1/reviews/2", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::69331c19d832c8a6b8b97f8db5aa9da1", "id": {"identifier": "10.7287/peerj.1025v0.1/reviews/3", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::781662270ccaab6b43f5620927535d5d", "id": {"identifier": "10.7287/peerj.1025v0.2/reviews/2", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::dc577939b05f0056d2d87c2e1d2dc599", "id": {"identifier": "10.7287/peerj.1025v0.2/reviews/1", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::484e852ddefd49d61f2929f219c67db0", "id": {"identifier": "10.7287/peerj.1025v0.1/reviews/1", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::0f86900e05d2e0f9ac6d901150a7a834", "id": {"identifier": "10.7287/peerj.1025v0.3/reviews/1", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::c318628c0c9e51ff879a03b6b22b7101", "id": {"identifier": "10.7287/peerj.1025v0.3/reviews/2", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::c9b2f462b2f954f0f21a1ff85b23ab04", "id": {"identifier": "10.7287/peerj.1025v0.2/reviews/3", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "As more and more prokaryotic sequencing takes place, a method to quickly and accurately analyze this data is needed. Previous tools are mainly designed for metagenomic analysis and have limitations; such as long runtimes and significant false positive error rates. The online tool GenomePeek (edwards.sdsu.edu/GenomePeek) was developed to analyze both single genome and metagenome sequencing files, quickly and with low error rates. GenomePeek uses a sequence assembly approach where reads to a set of conserved genes are extracted, assembled and then aligned against the highly specific reference database. GenomePeek was found to be faster than traditional approaches while still keeping error rates low, as well as offering unique data visualization options.", "author": ["Edwards Robert A.", "McNair Katelyn"], "localIdentifier": [{"type": "doi", "id": "10.7717/peerj.1025"}], "id": "50|dli_resolver::e04780f8d04c3f910f6706494775bd8e", "relatedPublications": 0, "date": [""], "title": ["\"GenomePeek—an online tool for prokaryotic genome and metagenome analysis\""], "relatedDatasets": 8}
237
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::a25b8831ff6377445127d02bde3802b0", "id": {"identifier": "dq074693.1", "schema": "ncbi-n"}}], "abstract": "", "title": ["Native recombinant kisspeptin can induce"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.cbpb.2016.05.002"}], "id": "50|elsevier____::355754af268b7d3e034164b4971e64d7", "relatedPublications": 0, "date": ["2016"], "relatedDatasets": 1}
238
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::6d70a9dd75b0b4fdf3a116f8b195b03f", "id": {"identifier": "10.3886/icpsr22410.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Madondo, Kumbirai"], "localIdentifier": [{"type": "icpsr", "id": "118947"}], "relatedPublications": 0, "title": ["Contextualizing the Health Belief Model and the Social Epidemiology Theories in the Study of AIDS in Malawi"], "id": "50|r3d100010255::53eca98342fbba9ea1678972415a9dcc"}
239
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2c212d1c82995a7eb6954e7580d8809f", "id": {"identifier": "10.5517/ccsm1jy", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "An efficient anionic bicyclization of tryptamine-derived Zincke aldehydes forms the basis for a three-step route to the tetracyclic ABCE core of many Strychnos, Aspidosperma, and Iboga alkaloids. This powerful reaction is showcased in a five-step synthesis of the Strychnos alkaloid norfluorocurarine from tryptamine and pyridine.", "author": ["Vanderwal Christopher D.", "Martin David B. C."], "localIdentifier": [{"type": "doi", "id": "10.1021/ja900640v"}], "id": "50|dli_resolver::01e87395311b59c01620797bf3f7ed0a", "relatedPublications": 0, "date": [""], "title": ["\"Efficient Access to the Core of theStrychnos,AspidospermaandIbogaAlkaloids. A Short Synthesis of Norfluorocurarine\""], "relatedDatasets": 1}
240
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c78691104bcfd5f091ccb14ebfb22f5b", "id": {"identifier": "10.5517/cc6ykd2", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The molybdenum nitrido complex 15NMo[N(R)Ar]3#R##N#(where R = C(CD3)2CH3, Ar = 3,5-C6H3Me2) reacted with the anhydride of trifluoroacetic acid at room temperature to afford the correspondent organonitrogen compound in almost quantitative yield without the necessity of using additional reagents to achieve the C–N coupling.", "author": ["Henderickx Huub", "de Vries Koen", "Spoel Jan van der", "Kwakkenbos Gerard", "Peters Alexander"], "localIdentifier": [{"type": "doi", "id": "10.1039/b305774g"}], "id": "50|dli_resolver::6b869146566bb26ca52555f5ebd7c6c7", "relatedPublications": 0, "date": [""], "title": ["\"Direct formation of an organonitrogen compound from a molybdenum nitrido species\""], "relatedDatasets": 1}
241
{"typology": "publication", "publisher": ["Bioscience, biotechnology, and biochemistry"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::6208d47640e6fc3f363059f15965db97", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=27299394&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::8589f1b7e382dad6fb84d24d44ad6496", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=27299394&result=sequence_release", "schema": "url"}}], "abstract": "None: Polar orange pigments were extracted from the cultured cells of marine bacterium strain SD-212 and purified by chromatographic methods. The structures of two new trihydroxy-keto-carotenoids, (2R,3S,3'S)-2-hydroxyastaxanthin (1) and (2R,3S,3'R)-2-hydroxyadonixanthin (2) were determined by means of spectral methods. Known carotenoids (3S,2'R,3'R)-erythroxanthin (3), (2R,3S',2' R,3'S)-2,3,2',3'-tetrahydroxy-β,β-carotene-4,4'-dione (4), (2R,3S,2'R,3'R)-2,3,2',3'-tetrahydroxy-β,β-caroten-4-one (5), (3S,3'S)-astaxanthin (6), and (3S,3'R)-adonixanthin (7) were also isolated.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1271/bbb.60.200"}, {"type": "pbmid", "id": "27299394"}], "author": ["Shizuri Y", "Izumida H", "Yokoyama A", "Miki W"], "relatedPublications": 0, "id": "50|r3d100010527::dab2bed8bf4ed1c573e15ba1503c5545", "title": ["New Trihydroxy-keto-carotenoids Isolated from an Astaxanthin-producing Marine Bacterium."], "relatedDatasets": 2}
242
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::8a3e2e038b571a9f644ddd299b7ee7ec", "id": {"identifier": "fj355920", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::1a9e674fac662c28ebf96b68a3842fc5", "id": {"identifier": "jq765412", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::f27a250e998d29cfb31fa7758b00cae7", "id": {"identifier": "jx416228", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::712d04ccb08f965a1ce9f4d1b550a030", "id": {"identifier": "kc588948", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::8bb2c110dfe172af9787100d959f1b37", "id": {"identifier": "eu553489", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::f23052c4fa7e01562df5632f807995a7", "id": {"identifier": "kc588947", "schema": "ncbi-n"}}], "abstract": "", "title": ["A real-time RT-qPCR assay for the detection of"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jviromet.2017.03.004"}], "id": "50|elsevier____::b1f9a34ad40eec4c8e6f98433aa78a02", "relatedPublications": 0, "date": ["2017"], "relatedDatasets": 6}
243
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b6e489f02954d218708cb1772a010e8a", "id": {"identifier": "10.5517/ccdc.csd.cc1mt4l5", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::cf5d0c9f0b5a65a2a29769f0b6fb78d4", "id": {"identifier": "10.5517/ccdc.csd.cc1mt4q9", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0f6d8c16fa690786abe86c190f6e46c3", "id": {"identifier": "10.5517/ccdc.csd.cc1mt5cz", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The strong Lewis acid Al(C6F5)3, in combination with a strong Lewis base N-heterocyclic olefin (NHO), cooperatively promotes the living ring-opening (co)polymerization of lactones, represented by δ-valerolactone (δ-VL) and e-caprolactone (e-CL) in this study. Medium to high molecular weight linear (co)polyesters (Mw up to 855 kg/mol) are achieved, and most of them exhibit narrow molecular weight distributions (Đ as low as 1.02). Detailed investigations into the structures of key reaction intermediates, kinetics, and polymer structures have led to a polymerization mechanism, in that initiation involves nucleophilic attack of the Al(C6F5)3-activated monomer by NHO to form a structurally characterized zwitterionic, tetrahedral intermediate, followed by its ring-opening to generate active zwitterionic species. In the propagation cycle, this ring-opened zwitterionic species and its homologues attack the incoming monomer activated by Al(C6F5)3 to generate the tetrahedral intermediate, followed by the rate-deter...", "author": ["Wang Qianyi", "Zhang Yuetao", "-X, Chen Eugene Y.", "Zhao Wuchao", "He Jianghua"], "localIdentifier": [{"type": "doi", "id": "10.1021/acs.macromol.6b02398"}], "id": "50|dli_resolver::a1cefafec4e4aa8cd0e7b5dbb41cadfe", "relatedPublications": 0, "date": [""], "title": ["\"Living Ring-Opening Polymerization of Lactones byN-Heterocyclic Olefin/Al(C6F5)3Lewis Pairs: Structures of Intermediates, Kinetics, and Mechanism\""], "relatedDatasets": 3}
244
{"typology": "publication", "publisher": ["Journal of bacteriology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::b8b77d6b64e735002d04567ca2cb0990", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1653219&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c33407759aa7dcf4bada9b87a878bf38", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1653219&result=taxon", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::04ff16a95c6037460e5f058eb616b0fd", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1653219&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::d8357ef9864ffe4f0058e7b122fb2c1e", "id": {"identifier": "m67475", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5159fcf199ecee2bd1d009ca5aa103c0", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1653219&result=coding_release", "schema": "url"}}], "abstract": "None: A family of repetitive elements from the cyanobacterium Anabaena sp. strain PCC 7120 was identified through the proximity of one element to the psbAI gene. Four members of this seven-member family were isolated and shown to have structures characteristic of bacterial insertion sequences. Each element is approximately 1,200 bp in length, is delimited by a 30-bp inverted repeat, and contains two open reading frames in tandem on the same DNA strand. The four copies differ from each other by small insertions or deletions, some of which alter the open reading frames. By using a system designed to trap insertion elements, one of the elements, denoted IS895, was shown to be mobile. The target site was not duplicated upon insertion of the element. Two other filamentous cyanobacterial strains were also found to contain sequences homologous to IS895.", "author": ["Se, Curtis", "Ja, Martin", "Weislo L J", "Cai, Y.", "Alam, J.", "Lj, Weislo", "Cai Y", "Alam J", "Jm, Vrba", "Vrba J M", "Martin J A", "Curtis S E"], "localIdentifier": [{"type": "pbmid", "id": "1653219"}, {"type": "pmid", "id": "1653219"}], "id": "50|dedup_wf_001::05c9b76c38020f395d48c6f3487922a9", "relatedPublications": 0, "date": ["1991-09-01"], "title": ["Characterization of the IS895 family of insertion sequences from the cyanobacterium Anabaena sp. strain PCC 7120."], "relatedDatasets": 5}
245
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::406300f2ddbf1a7edc8b7b9173ef0639", "id": {"identifier": "10.5517/cc13n7tt", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c710cda739beef55325e90050c3fc138", "id": {"identifier": "10.5517/cc13n7ss", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Four novel organosilicon compounds of Bath-n (n = 1–4), where Bath-1 = 4,7-diphenyl-2-(4-(trimethylsilyl)phenyl)-1,10-phenanthroline, Bath-2 = 4,7-diphenyl-2-(4-(dimethylphenylsilyl)phenyl)-1,10-phenanthroline, Bath-3 = 4,7-diphenyl-2-(4-(methyldiphenylsilyl)phenyl)-1,10-phenanthroline, Bath-4 = 4,7-diphenyl-2-(4-(triphenylsilyl)phenyl)-1,10-phenanthroline, respectively, were designed and synthesized. The photoluminescent (PL) spectra of Bath-n (n = 1–4) mainly locate at ca. 380 nm and present aggregation-induced emission enhancement character in the H2O/THF mixture. Furthermore, the PL intensity (IPL) of Bath-3@MCM-41 composite could linearly respond to the fraction of O2 (fO) in the O2/N2 medium as fO ≤ 60 v%, while its IPL can be 84.1% quenched in pure O2 referenced to the IPL in pure N2. At last, the geometries of the ground states of Bath-n (n = 1–4) were also simulated by the density functional theory to explore the character of the frontier molecular orbitals of Bath-n (n = 1–4).", "author": ["Si Zhenjun", "Fan Wei", "Chen Cong", "Xu Yazhou", "Wan Yuchun", "Wang Dianwei"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.dyepig.2015.10.018"}], "id": "50|dli_resolver::b1f7a2309433fd6345964f0d5e1c6acf", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis and property studies of novel Bath derivatives containing organosilyl groups with aggregation-induced emission enhancement and optical O2 sensoring characters\""], "relatedDatasets": 2}
246
{"typology": "publication", "publisher": ["Japanese journal of medical science & biology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::ee7424d68cc34b5007ff09c36050072c", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1291763&result=sequence_release", "schema": "url"}}], "abstract": "None: We used polymerase chain reaction (PCR) to amplify a segment, about 560 base pairs (bp), of HIV-1 gag DNA prepared from peripheral blood mononuclear cells of a seropositive Taiwanese pair of mother and infant. TM-1 and TC-1 clones of PCR-amplified DNA derived from the mother and infant, respectively, showed a 94.5% homology with each other. However, the TM-1 and TC-1 sequences exhibited lower degrees of homology, i.e. only 85.1% and 85.8%, respectively, with the corresponding gag segment of a North American HIV-1 subtype (HXB2), and 86.4% and 87.0%, respectively, with that of a Zairean HIV-1 subtype (Z2Z6). The divergence of TM-1 and TC-1 sequences from those of HXB2 and Z2Z6 is particularly prominent in the first (5' proximal) 200 bp of the cloned DNA segment, involving transitions more frequently than transversions. Two additional clones TM-2 and TC-2 derived from the mother and infant were sequenced for the first 200 bp. These four clones showed a high degree of homology (94.7-97.5%) among themselves, providing an evidence for transmission of the virus from the mother to the infant. These findings show the epidemiological value of PCR, and indicate the presence of a gag subtype of HIV-1 which is distinct from both the North American and Zairean subtypes according to the phylogenetic tree constructed.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "1291763"}], "author": ["Chang K S", "Guo H G"], "relatedPublications": 0, "id": "50|r3d100010527::9e8c3c8178e44ad9d1aa8f63df3ff8c7", "title": ["A vertically transmitted HIV-1 gag-subtype variant detected in Taiwan."], "relatedDatasets": 1}
247
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::cdf5e3469234f90efaedfce2b72c6910", "id": {"identifier": "10.3886/icpsr08256.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Neogi, Ranjini"], "localIdentifier": [{"type": "icpsr", "id": "119582"}], "relatedPublications": 0, "title": ["Three Essays on Housing Affordability and Housing Supply Regulation Dynamics"], "id": "50|r3d100010255::88ca860840b43ed23f31589c14982d67"}
248
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::0d876a8cc30d76029c76a5e1860ac999", "id": {"identifier": "4mb5", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::f11d2002b1a5f980dddd70e9eb9b1933", "id": {"identifier": "4mb3", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::8862321c2da5f8cb71e64e1e6c2cb65f", "id": {"identifier": "4mb4", "schema": "pdb"}}], "abstract": "The four-domain structure of chitinase 60 from Moritella marina (MmChi60) is outstanding in its complexity. Many glycoside hydrolases, such as chitinases and cellulases, have multi-domain structures, but only a few have been solved. The flexibility of the hinge regions between the domains apparently makes these proteins difficult to crystallize. The analysis of an active-site mutant of MmChi60 in an unliganded form and in complex with the substrates NAG4 and NAG5 revealed significant differences in the substrate-binding site compared with the previously determined complexes of most studied chitinases. A SAXS experiment demonstrated that in addition to the elongated state found in the crystal, the protein can adapt other conformations in solution ranging from fully extended to compact.", "author": ["Vorgias Constantinos E.", "Malecki Piotr H.", "Svergun Dmitri I.", "Rypniewski Wojciech", "Petoukhov Maxim V."], "localIdentifier": [{"type": "doi", "id": "10.1107/s1399004713032264"}], "id": "50|dli_resolver::1b2f6cd598c3d0b70237e2d47503c9e0", "relatedPublications": 0, "date": [""], "title": ["\"Crystal structures of substrate-bound chitinase from the psychrophilic bacteriumMoritella marinaand its structure in solution\""], "relatedDatasets": 3}
249
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::ff15d6ac0324fd0a81cc468c5f8fd0a1", "id": {"identifier": "10.3886/icpsr09586.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::ff15d6ac0324fd0a81cc468c5f8fd0a1", "id": {"identifier": "10.3886/icpsr09586.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::d9a408d019c7806b7c6b9345a83998d6", "id": {"identifier": "10.3886/icpsr09586", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Detailed interview data from 250 male narcotic addicts attending methadone maintenance treatment centers in Baltimore and New York City were used to confirm and extend previous findings regarding the frequency of nonnarcotic drug abuse among relevant addict subgroups. Consistent with earlier results, abuse of nonnarcotic drugs in general, and particularly cocaine, was higher during periods of addiction than during periods of nonaddiction. Overall, marijuana and cocaine were the two main drugs of abuse, but variations were present according to addiction status period, city, and ethnic group membership. Relationships between cocaine use and specific types of criminal activity were also examined. It was found that there were high associations between cocaine use and several different kinds of crime.", "author": ["Nurco David N.", "Ball, John C.", "Ball John C.", "Kinlock, Timothy W.", "Kinlock Timothy W.", "Nurco, David N.", "Hanlon, Thomas E.", "Hanlon Thomas E."], "localIdentifier": [{"type": "doi", "id": "10.1016/0010-440x(88)90060-0"}], "id": "50|dedup_wf_001::24e5d62947fa96a42d80acc6073f3518", "relatedPublications": 0, "date": [""], "title": ["Nonnarcotic drug use over an addiction career—A study of heroin addicts in Baltimore and New York City"], "relatedDatasets": 3}
250
{"typology": "publication", "publisher": ["The Plant journal : for cell and molecular biology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::2bbe08aefad91c95bfde8a842561bb9a", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=15447655&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::ab9b3ce2d5b3120adbacc37aba8aefbf", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=15447655&result=sequence_release", "schema": "url"}}], "abstract": "None: (S)-Norcoclaurine synthase (NCS) (EC 4.2.1.78) catalyzes the condensation of 3,4-dihydroxyphenylethylamine (dopamine) and 4-hydroxyphenylacetaldehyde (4-HPAA) as the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine, sanguinarine, and berberine, in plants. A molecular clone encoding NCS was isolated from a meadow rue (Thalictrum flavum ssp. glaucum) cell suspension culture cDNA library. Heterologous expression of the NCS cDNA, truncated to remove a putative signal peptide, produced a recombinant protein with NCS activity. Recombinant NCS showed sigmoidal saturation kinetics for dopamine (Hill coefficient=1.98), hyperbolic saturation kinetics for 4-HPAA (Km of 700 microm), and pH and temperature optima of 7.0 and 40 degrees C, respectively, all similar to the purified, plant-derived enzyme. NCS exhibits 28-38% identity, and putative structural homology, with the Bet v 1 allergen and pathogenesis-related (PR)10 protein families. NCS also displays 35% identity with the enzyme (HYP1) responsible for hypericin biosynthesis in St John's wort (Hypericum perforatum). The novel catalytic functions of NCS and HYP1 define a new class of plant secondary metabolic enzymes within the Bet v 1 and PR10 protein families. Weaker homology was also detected between NCS and proteins identified in the latex of Papaver somniferum (opium poppy), and in Arabidopsis thaliana. A family of three to five NCS genes is abundantly expressed in the rhizome, followed by petioles and roots of T. flavum. NCS transcripts were localized to the immature endodermis and pericycle in roots, and the protoderm of leaf primordia in rhizomes; thus, the sites of NCS gene expression and berberine accumulation are temporally and spatially separated in roots and rhizomes respectively.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "15447655"}], "author": ["Samanani Nailish", "Liscombe David K", "Facchini Peter J"], "relatedPublications": 0, "id": "50|r3d100010527::f85c19c394c54b463234219ef2126552", "title": ["Molecular cloning and characterization of norcoclaurine synthase, an enzyme catalyzing the first committed step in benzylisoquinoline alkaloid biosynthesis."], "relatedDatasets": 2}
251
{"typology": "publication", "publisher": ["Cambridge University Press (CUP)"], "doiRels": [{"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::4d170a7cd408943cb6875df03215c244", "id": {"identifier": "10.3886/icpsr04667.v1", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a06c92577e906eaf1cb50dfb9d3d2331", "id": {"identifier": "10.3886/icpsr04667.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::b5b041684db3c0634c05c11a8dba1b93", "id": {"identifier": "10.3886/icpsr29761.v1", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::1c46d1176d705c5c7aefb35c1b29bf8e", "id": {"identifier": "10.3886/icpsr29761", "schema": "doi"}}, {"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::17a210a56b8e81e89cf9530c11e1c5f9", "id": {"identifier": "10.3886/icpsr29761.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::17a210a56b8e81e89cf9530c11e1c5f9", "id": {"identifier": "10.3886/icpsr29761.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::f77d7a87b87bf6b1a37e72b0300e576a", "id": {"identifier": "10.3886/icpsr04667", "schema": "doi"}}, {"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a06c92577e906eaf1cb50dfb9d3d2331", "id": {"identifier": "10.3886/icpsr04667.v2", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Background. Little is known about how the views of the public are related to self-stigma among people with mental health problems. Despite increasing activity aimed at reducing mental illness stigma, there is little evidence to guide and inform specific anti-stigma campaign development and messages to be used in mass campaigns. A better understanding of the association between public knowledge, attitudes and behaviours and the internalization of stigma among people with mental health problems is needed. Method. This study links two large, international datasets to explore the association between public stigma in 14 European countries (Eurobarometer survey) and individual reports of self-stigma, perceived discrimination and empowerment among persons with mental illness (n=1835) residing in those countries (the Global Alliance of Mental Illness Advocacy Networks (GAMIAN) study). Results. Individuals with mental illness living in countries with less stigmatizing attitudes, higher rates of help- seeking and treatment utilization and better perceived access to information had lower rates of self-stigma and perceived discrimination and those living in countries where the public felt more comfortable talking to people with mental illness had less self-stigma and felt more empowered. Conclusions. Targeting the general public through mass anti-stigma interventions may lead to a virtuous cycle by disrupting the negative feedback engendered by public stigma, thereby reducing self-stigma among people with mental health problems. A combined approach involving knowledge, attitudes and behaviour is needed ; mass interventions that facilitate disclosure and positive social contact may be the most effective. Improving availability of information about mental health issues and facilitating access to care and help-seeking also show promise with regard to stigma.", "author": ["Evans-Lacko S.", "Evans-Lacko, S.", "Brohan, E.", "Mojtabai R.", "Thornicroft, G.", "Brohan E.", "Thornicroft G.", "Mojtabai, R."], "localIdentifier": [{"type": "doi", "id": "10.1017/s0033291711002558"}], "id": "50|dedup_wf_001::e6271920b3c62d4b493c08c859aeddeb", "relatedPublications": 0, "date": [""], "title": ["Association between public views of mental illness and self-stigma among individuals with mental illness in 14 European countries"], "relatedDatasets": 8}
252
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::b296a8340e6badd8e36c3794bd12fc26", "id": {"identifier": "2ba1", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::aac78b650a88ebbbccc86e94bb017d83", "id": {"identifier": "2ba0", "schema": "pdb"}}], "abstract": "Exosomes emerge as central 3′→5′ RNA processing and degradation machineries in eukaryotes and archaea. We determined crystal structures of two 230 kDa nine subunit archaeal exosome isoforms. Both exosome isoforms contain a hexameric ring of RNase phosphorolytic (PH) domain subunits with a central chamber. Tungstate soaks identified three phosphorolytic active sites in this processing chamber. A trimer of Csl4 or Rrp4 subunits forms a multidomain macromolecular interaction surface on the RNase-PH domain ring with central S1 domains and peripheral KH and zinc-ribbon domains. Structural and mutational analyses suggest that the S1 domains and a subsequent neck in the RNase-PH domain ring form an RNA entry pore to the processing chamber that only allows access of unstructured RNA. This structural framework can mechanistically unify observed features of exosomes, including processive degradation of unstructured RNA, the requirement for regulatory factors to degrade structured RNA, and leftover tails in rRNA trimming.", "author": ["Wenig Katja", "Hopfner Karl-Peter", "Büttner Katharina"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.molcel.2005.10.018"}], "id": "50|dli_resolver::4c1609b06f0e0ef2f4e7b6e393aeeacd", "relatedPublications": 0, "date": [""], "title": ["\"Structural Framework for the Mechanism of Archaeal Exosomes in RNA Processing\""], "relatedDatasets": 2}
253
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::d78857fb42098982e842b251670d0ca0", "id": {"identifier": "jf781162", "schema": "ncbi-n"}}], "abstract": "", "title": ["The interaction of Rotavirus A pig/China/NMTL/2008/G9P[23] VP6 with cellular beta-actin is required for optimal RV replication and infectivity"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.vetmic.2016.11.008"}], "id": "50|elsevier____::5a4be266b0aa42b7561c2217c00c4707", "relatedPublications": 0, "date": ["2016"], "relatedDatasets": 1}
254
{"typology": "publication", "publisher": ["Pest management science"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::cd304dd21368e5811adae92b6a10f556", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16688790&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::de492fc79218c1997e53388f7f41405a", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16688790&result=sequence_release", "schema": "url"}}], "abstract": "None: The cytochrome b (cyt b) gene structure was characterized for different agronomically important plant pathogens, such as Puccinia recondita f sp tritici (Erikss) CO Johnston, P graminis f sp tritici Erikss and Hennings, P striiformis f sp tritici Erikss, P coronata f sp avenae P Syd & Syd, P hordei GH Otth, P recondita f sp secalis Roberge, P sorghi Schwein, P horiana Henn, Uromyces appendiculatus (Pers) Unger, Phakopsora pachyrhizi Syd & P Syd, Hemileia vastatrix Berk & Broome, Alternaria solani Sorauer, A alternata (Fr) Keissl and Plasmopara viticola (Berk & Curt) Berlese & de Toni. The sequenced fragment included the two hot spot regions in which mutations conferring resistance to QoI fungicides may occur. The cyt b gene structure of these pathogens was compared with that of other species from public databases, including the strobilurin-producing fungus Mycena galopoda (Pers) P Kumm, Saccharomyces cerevisiae Meyer ex Hansen, Venturia inaequalis (Cooke) Winter and Mycosphaerella fijiensis Morelet. In all rust species, as well as in A solani, resistance to QoI fungicides caused by the mutation G143A has never been reported. A type I intron was observed directly after the codon for glycine at position 143 in these species. This intron was absent in pathogens such as A alternata, Blumeria graminis (DC) Speer, Pyricularia grisea Sacc, Mycosphaerella graminicola (Fuckel) J Schröt, M fijiensis, V inaequalis and P viticola, in which resistance to QoI fungicides has occurred and the glycine is replaced by alanine at position 143 in the resistant genotype. The present authors predict that a nucleotide substitution in codon 143 would prevent splicing of the intron, leading to a deficient cytochrome b, which is lethal. As a consequence, the evolution of resistance to QoI fungicides based on G143A is not likely to evolve in pathogens carrying an intron directly after this codon.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "16688790"}], "author": ["Garibaldi Angelo", "Grasso Valeria", "Gisi Ulrich", "Palermo Simona", "Sierotzki Helge"], "relatedPublications": 0, "id": "50|r3d100010527::edc7ac56ce0f751c42af58127749f0e5", "title": ["Cytochrome b gene structure and consequences for resistance to Qo inhibitor fungicides in plant pathogens."], "relatedDatasets": 2}
255
{"typology": "publication", "publisher": ["JSTOR"], "doiRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1a8e415b450de95b56b99882ffc6de7d", "id": {"identifier": "10.1594/pangaea.863695", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2c71bf8249863699c9967a9f923d762a", "id": {"identifier": "10.1594/pangaea.863692", "schema": "doi"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e402849ce144eafb69fd8a196eed2d7f", "id": {"identifier": "10.1594/pangaea.863689", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Pangaea", "datasourceId": "dli_________::r3d100010134"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Smol John P.", "Paul, Jasinski J. P.", "Ruhland Kathleen", "Warner Barry G."], "localIdentifier": [{"type": "doi", "id": "10.2307/1552448"}], "id": "50|dli_resolver::24721a3f9cb9b52b39896ebc8d4739ff", "relatedPublications": 0, "date": [""], "title": ["\"Response of Diatoms and Other Siliceous Indicators to the Developmental History of a Peatland in the Tiksi Forest, Siberia, Russia\""], "relatedDatasets": 3}
256
{"typology": "publication", "publisher": ["International journal of systematic and evolutionary microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::228ac45da435dcd34269aa3f4d014967", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22307507&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::b6e33a3be567756e6bc681b12586f70e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22307507&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::bb114d6b66ea70dba9d6b49bdff5afa7", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22307507&result=read_study", "schema": "url"}}], "abstract": "None: A novel bacterial strain, YC7001(T), was isolated from the rhizosphere soil of rice collected at Jinju, Korea, and was characterized using a polyphasic approach. Cells of strain YC7001(T) were Gram-negative-staining, yellow-pigmented, rod-shaped, aerobic, heterotrophic and non-motile. Strain YC7001(T) grew optimally at 25-30 °C, pH 5.0-8.0 and degraded gelatin, cellulose and chitin. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain YC7001(T) belonged to the genus Chitinophaga in the family Chitinophagaceae. The most closely related species were Chitinophaga sancti NBRC 15057(T) (96.9%), Chitinophaga ginsengisoli Gsoil 052(T) (95.9%), Chitinophaga pinensis DSM 2588(T) (95.7%), Chitinophaga filiformis IFO 15056(T) (95.7%) and Chitinophaga niabensis JS13-10(T) (95.0%). The DNA-DNA relatedness value of strain YC7001(T) with C. sancti NBRC 15057(T) was 15.2 ± 0.6%. Strain YC7001(T) contained MK-7 as the major menaquinone and homospermidine as the major polyamine. The major fatty acids of strain YC7001(T) were C(15:0) iso, C(16:1)ω5c and C(17:0) iso 3-OH. The polar lipids were phosphatidylethanolamine, unknown aminolipids and unknown lipids. The total genomic DNA G+C content was 41.3 mol%. On the basis of phenotypic, chemotaxonomic and phylogenetic analyses, strain YC7001(T) represents a novel species of the genus Chitinophaga, in the family Chitinophagaceae, for which the name Chitinophaga oryziterrae sp. nov. is proposed. The type strain is YC7001(T) ( = KACC 14533(T) = JCM 16595(T)).", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1099/ijs.0.036442-0"}, {"type": "pbmid", "id": "22307507"}], "author": ["Jeon Che Ok", "Park Tae Soon", "Chung Eu Jin", "Chung Young Ryun"], "relatedPublications": 0, "id": "50|r3d100010527::793066ae79ecf28025c5f8fb10ccf766", "title": ["Chitinophaga oryziterrae sp. nov., isolated from the rhizosphere soil of rice (Oryza sativa L.)."], "relatedDatasets": 3}
257
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f7abe913fad484975ac20d815632ef12", "id": {"identifier": "10.5517/ccpbdbq", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::08fd9c03ad5a96541a3ddfdc5a6d9e06", "id": {"identifier": "10.5517/ccpbdjx", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a03a0e661185c82219d079a77019f84d", "id": {"identifier": "10.5517/ccpbdgv", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8eb3e6548f3be848462b6e22b8d9d180", "id": {"identifier": "10.5517/ccpbdcr", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ab6363ed5eb53f48f966ce3ec89f8929", "id": {"identifier": "10.5517/ccpbdhw", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::02b1b32ead5311054f8fd35856022b5b", "id": {"identifier": "10.5517/ccpbdft", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5b2fb86115df89987ba21e47babc8bf7", "id": {"identifier": "10.5517/ccpbdds", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Abstract#R##N##R##N#CO2 fixation and transformation by metal complexes continuously receive attention from the viewpoint of carbon resources and environmental concerns. We found that the dinuclear copper(II) cryptate [Cu2L1](ClO4)4 (1; L1=N[(CH2)2NHCH2(m-C6H4)CH2NH-(CH2)2]3N) can easily take up atmospheric CO2 even under weakly acidic conditions at room temperature and convert it from bicarbonate into carbonate monoesters in alcohol solution. The compounds [Cu2L1(μ-O2COH)](ClO4)3 (2), [Cu2L1(μ-O2COR)](ClO4)3 (3: R=CH3; 4: R=C2H5; 5: R=C3H7; 6: R=C4H9; 7: R=C5H11; 8: R=CH2CH2OH), [Cu2L1(μ-O2CCH3)](ClO4)3 (9), and [Cu2L1(OH2)(NO3)](NO3)3 (10) were characterized by IR spectroscopy and ESI-MS. The crystal structures of 2–6 and 10 were studied by single-crystal X-ray diffraction analysis. On the basis of the crystal structures, solution studies, and DFT calculations, a possible mechanism for CO2 fixation and transformation is given.", "author": ["Chen Jia-Mei", "Feng Xiao-Long", "Wei Wei", "Lu Tong-Bu"], "localIdentifier": [{"type": "doi", "id": "10.1002/asia.200700042"}], "id": "50|dli_resolver::93d587730e946383dd80c8a40e89fef3", "relatedPublications": 0, "date": [""], "title": ["\"CO2 Fixation and Transformation by a Dinuclear Copper Cryptate under Acidic Conditions\""], "relatedDatasets": 7}
258
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Springer Nature", "datasourceId": "dli_________::nature"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::8d7433544d4f87e8fe97f99f10cf05f6", "id": {"identifier": "3ba6", "schema": "pdb"}}, {"relationSemantic": "references", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::b62f0a2e4caa4cd06df506e7789b4189", "id": {"identifier": "3b9r", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::b62f0a2e4caa4cd06df506e7789b4189", "id": {"identifier": "3b9r", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::eb5a5209dac1a8ce008173f3636a4b77", "id": {"identifier": "3b9b", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::8d7433544d4f87e8fe97f99f10cf05f6", "id": {"identifier": "3ba6", "schema": "pdb"}}, {"relationSemantic": "references", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::eb5a5209dac1a8ce008173f3636a4b77", "id": {"identifier": "3b9b", "schema": "pdb"}}], "abstract": "The sarcoplasmic reticulum Ca2+-ATPase, a P-type ATPase, has a critical role in muscle function and metabolism. Here we present functional studies and three new crystal structures of the rabbit skeletal muscle Ca2+-ATPase, representing the phosphoenzyme intermediates associated with Ca2+ binding, Ca2+ translocation and dephosphorylation, that are based on complexes with a functional ATP analogue, beryllium fluoride and aluminium fluoride, respectively. The structures complete the cycle of nucleotide binding and cation transport of Ca2+-ATPase. Phosphorylation of the enzyme triggers the onset of a conformational change that leads to the opening of a luminal exit pathway defined by the transmembrane segments M1 through M6, which represent the canonical membrane domain of P-type pumps. Ca2+ release is promoted by translocation of the M4 helix, exposing Glu 309, Glu 771 and Asn 796 to the lumen. The mechanism explains how P-type ATPases are able to form the steep electrochemical gradients required for key functions in eukaryotic cells.", "author": ["Nissen Poul", "Winther Anne-Marie Lund", "Oxvig Claus", "Picard Martin", "Preben, Morth J.", "Olesen Claus", "Møller Jesper Vuust", "Gyrup Claus"], "localIdentifier": [{"type": "doi", "id": "10.1038/nature06418"}], "id": "50|dli_resolver::0462f50e0be4c9412f9ed1f2d59ec376", "relatedPublications": 0, "date": [""], "title": ["\"The structural basis of calcium transport by the calcium pump\""], "relatedDatasets": 6}
259
{"typology": "publication", "publisher": ["The Royal Society"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::85ee0a2f2f560b945d907abcd2ab924c", "id": {"identifier": "10.6084/m9.figshare.c.3988716.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::8dd8e100b27c5d7cb8c1e8818ef34b2f", "id": {"identifier": "10.6084/m9.figshare.c.3988716.v2", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6ab4282dbb3f41cf1749dfec3d858c3e", "id": {"identifier": "10.6084/m9.figshare.c.3988716", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Hörandl Elvira", "Speijer Dave"], "localIdentifier": [{"type": "doi", "id": "10.1098/rspb.2017.2706"}], "id": "50|dli_resolver::18ac47ef5de6e631e2cfa349c5d9949f", "relatedPublications": 0, "date": [""], "title": ["How oxygen gave rise to eukaryotic sex"], "relatedDatasets": 3}
260
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b734266b83af763d29e11aabce80d223", "id": {"identifier": "10.5517/ccv15st", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e4af20731b14c8d7836000c14d9187e6", "id": {"identifier": "10.5517/ccv15rs", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f9e2fe6ea652595d717df5c7e3a381aa", "id": {"identifier": "10.5517/ccv15qr", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::7a24d4eaa9cb67309575c9f7e01f97fb", "id": {"identifier": "10.5517/ccs66y3", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The influence of substituents on the properties of tri- and hexafluorinated alcohols derived from 2,2,2-trifluoroethanol (TFE) and 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) was examined. Measurements of specific solvent−solute interactions revealed that H-bond donation (HBD) of fluorinated alcohols is sensitive to the steric hindrance of the OH group, whereas their Bronsted acidity is dependent only on the number of fluorine atoms. For hexafluorinated alcohols (HFAs), their association with amines characterized by X-ray diffraction showed that the balance between HBD and acidity is influenced by their structure. Moreover, the ability of HFAs to donate H-bonds is exerted in synclinal (sc), synperiplanar (sp), and also antiperiplanar (ap) conformations along the C−O bond. Comparison of the effects of fluorinated alcohols as promoting solvents in three reactions is reported. The positive correlation between rate constants and H-bonding donation ability for sulfide oxidation and imino Diels−Alder reaction brin...", "author": ["Legros Julien", "Laurence Christian", "Bonnet-Delpon Danièle", "Crousse Benoit", "Nicolet Pierre", "Slawin Alexandra M. Z.", "Vuluga Daniela"], "localIdentifier": [{"type": "doi", "id": "10.1021/jo1023816"}], "id": "50|dli_resolver::070d2c106a849d37aecc08573ac3fbcd", "relatedPublications": 0, "date": [""], "title": ["\"Influence of the Structure of Polyfluorinated Alcohols on Brønsted Acidity/Hydrogen-Bond Donor Ability and Consequences on the Promoter Effect\""], "relatedDatasets": 4}
261
{"typology": "publication", "publisher": ["Plasmid"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::4cd28510e5c8271aa4c3e4ccac8b67f8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8029329&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::97a75c8b7781a96cc01db0402e6c77b1", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8029329&result=coding_release", "schema": "url"}}], "abstract": "None: pAD1 is a hemolysin/bacteriocin plasmid originally identified in Enterococcus faecalis DS16. It encodes a mating response to a peptide sex pheromone, cAD1, secreted by recipient bacteria. Once pAD1 is acquired, production of the pheromone ceases--a trait related in part to a determinant designated traB. Here we report the nucleotide sequence of traB and the position of several transposon insertions resulting in the characteristic self-induction phenotype. The deduced product has a mass of 43.7 kDa with the C-terminal third consisting primarily of hydrophobic amino acid residues.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "8029329"}], "author": ["An F Y", "Clewell D B"], "relatedPublications": 0, "id": "50|r3d100010527::dc7648b360fbea7b2a81ac5cf5a72abc", "title": ["Characterization of the determinant (traB) encoding sex pheromone shutdown by the hemolysin/bacteriocin plasmid pAD1 in Enterococcus faecalis."], "relatedDatasets": 2}
262
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::b7c7781e264170080bcb8923717d1669", "id": {"identifier": "10.3886/icpsr07629.v2", "schema": "url"}}], "abstract": "The monetary authorities in East Asian countries have been strengthening their regional monetary cooperation since the Asian Currency Crisis in 1997. In this paper, we propose a deviation measurement for coordinated exchange rate policies in East Asia to enhance the monetary authorities' surveillance process for their regional monetary cooperation. We estimate an AMU (Asian Monetary Unit) as a weighted average of East Asian currencies according to the method to calculate the ECU used under the EMS before introducing the euro into some EU countries. We consider four types of AMU, which are based on trade volume, nominal GDP, GDP measured at PPP, and international reserves. After choosing both the AMUs based on GDP measured at PPP weight and trade weight from a viewpoint of stability of the AMU value in terms of a currency basket composed of the US dollar and the euro, we calculate the deviation indicators from the benchmark rates for each of the East Asian currencies. We compare both nominal and real deviation indicators by taking into account inflation rate differentials. The real deviation indicator should be adequate for surveillance over effects of exchange rate policy on real economy while the nominal one can be frequently watched in real time.", "author": ["Junko Shimizu", "Eiji Ogawa"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:od_______645::f468bdc3e200dee583752168a2ab9939"}], "id": "50|dli_resolver::09e0bebfaa603be5a011ea4ebf62189b", "relatedPublications": 0, "date": [""], "title": ["A Deviation Measurement for Coordinated Exchange Rate Policies in East Asia"], "relatedDatasets": 1}
263
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Springer Nature", "datasourceId": "dli_________::nature"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "", "dnetId": "60|dedup_wf_001::66fb87b158fc7c7154bc0196d17c1dbd", "id": {"identifier": "nm_057090", "schema": "genbank"}}], "abstract": "We report that artemin, a member of the glial cell line-derived neurotrophic factor family of ligands, is oncogenic for human mammary carcinoma. Artemin is expressed in numerous human mammary carcinoma cell lines. Forced expression of artemin in mammary carcinoma cells results in increased anchorage-independent growth, increased colony formation in soft agar and in three-dimensional Matrigel, and also promotes a scattered cell phenotype with enhanced migration and invasion. Moreover, forced expression of artemin increases tumor size in xenograft models and leads to highly proliferative, poorly differentiated and invasive tumors. Expression data in Oncomine indicate that high artemin expression is significantly associated with residual disease after chemotherapy, metastasis, relapse and death. Artemin protein is detectable in 65% of mammary carcinoma and its expression correlates to decreased overall survival in the cohort of patients. Depletion of endogenous artemin with small interfering RNA, or antibody inhibition of artemin, decreases the oncogenicity and invasiveness of mammary carcinoma cells. Artemin is therefore oncogenic for human mammary carcinoma, and targeted therapeutic approaches to inhibit artemin function in mammary carcinoma warrant consideration.", "author": ["Pandey V", "Lobie P E", "Liu D X", "Fielder G C", "Perry J K", "Kang J", "Qian P X", "Wu Z S", "Zhu T", "Mei B"], "localIdentifier": [{"type": "doi", "id": "10.1038/onc.2009.66"}], "id": "50|dli_resolver::92a26d885ffbdf031c3600ac737da1f4", "relatedPublications": 0, "date": [""], "title": ["\"Artemin is oncogenic for human mammary carcinoma cells\""], "relatedDatasets": 1}
264
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b958c0846fdb681418385a0d16493be3", "id": {"identifier": "10.5517/cc68wkw", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::3d6f8f04e6d22a6c200698b34e7c8b71", "id": {"identifier": "10.5517/cc68wjv", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::81ed962319ecc6f3b73ab0e854e33295", "id": {"identifier": "10.5517/cc68wq1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9e3bfe5785d256953f437e7f7a28858b", "id": {"identifier": "10.5517/cc68wmy", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8a1419b16950518cfcc20cd67d7a6bc3", "id": {"identifier": "10.5517/cc68wnz", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::81dc8b59fdb6e371dffa4f14e5e55f31", "id": {"identifier": "10.5517/cc68wp0", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a55d4466df627854d0bfa1846e5e4f85", "id": {"identifier": "10.5517/cc68wht", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::05c315c19b94920c87c043c043f4b5ed", "id": {"identifier": "10.5517/cc68wlx", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The reactions of a phosphavinyl Grignard reagent, [CyPC(But)MgCl(OEt2)], Cy=cyclohexyl, with a variety of group 15 halide compounds in a number of stoichiometries have been investigated. When the Grignard reagent is reacted with Ph2PCl or CyPCl2, Cy=cyclohexyl, in a 1∶1 and 2∶1 stoichiometry respectively, the 1,3-diphosphapropene, Ph2PC(But)PCy, and triphosphabicyclo[2.1.0]pentane compound, CyP{C2(But)2P2Cy2}, are formed. The 2∶1 and 3∶1 reactions of the Grignard reagent with either PCl3 or AsCl3 lead to the strained triphospha- and arsadiphosphabicyclo[1.1.1]pentanes, ButC{μ-P(Cy)}2{μ-ECl}CBut, E=P#R##N#or As in moderate yield. The related 1∶1 reaction of the Grignard reagent with PCl3 affords two products, a phosphino-substituted phosphorus ylide, Cl2PC(But)P(Cy)(Cl)2, and a tetraphosphabicyclo[2.1.1]hexane, ButC{μ-P(Cl)P(Cy)}{μ-P(Cy)}{μ-P(Cl)}CBut, the mechanism of formation of which is discussed. An analogous 1∶1 reaction of the Grignard reagent with SbCl3 led to an unusual heterocyclic compound, (Cl2Sb)(But)CSb(Cl)C(But)P(Cl)(Cy)P(Cy), which quantitatively decomposes in solution to yield the known 1,2-dihydro-1,2-diphosphete, P2(Cy)2C2(But)2. All prepared compounds have been crystallographically#R##N#characterised.", "author": ["Richards Anne F.", "Junk Peter C.", "Jones Cameron", "Waugh Mark"], "localIdentifier": [{"type": "doi", "id": "10.1039/b204663f"}], "id": "50|dli_resolver::9721acd33dd213ce09ce5d42afe131ee", "relatedPublications": 0, "date": [""], "title": ["\"The interaction of phosphavinyl Grignard reagents with group 15 halides: synthesis and structural characterisation of novel heterocyclic and heterocage compounds\""], "relatedDatasets": 8}
265
{"typology": "publication", "publisher": ["Walter de Gruyter GmbH"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9aa3f770861dc7be18db776d75c86e10", "id": {"identifier": "10.5517/ccdc.csd.cc1ncx97", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Xu Wen-Chang", "Qi De-Qiang", "You Jin-Zong", "Huang Xu-Wen", "Tong Sheng-Yue", "Zhang Yi-Ping", "Li Tang-Qi"], "localIdentifier": [{"type": "doi", "id": "10.1515/ncrs-2016-0268"}], "id": "50|dli_resolver::e028cb7fc4c034cf413fd0550ffe7f07", "relatedPublications": 0, "date": [""], "title": ["Crystal structure of methyl 1-(4-fluorobenzyl)-3-phenyl-1H-pyrazole-5-carboxylate, C18H15FN2O2"], "relatedDatasets": 1}
266
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::475d7c8da36b4eb1b6cc56ce70edf7ec", "id": {"identifier": "10.3886/icpsr04186.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Troiano, Richard P.", "Ainsworth, Barbara E.", "Tudor-Locke, Catrine", "Washington, Tracy L."], "localIdentifier": [{"type": "icpsr", "id": "104394"}], "relatedPublications": 0, "title": ["Linking the American Time Use Survey (ATUS) and the compendium of physical activities: Methods and rationale"], "id": "50|r3d100010255::b74a3691fd3547b511a2922195d1eaa8"}
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{"typology": "publication", "publisher": ["FapUNIFESP (SciELO)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::93860f7ce6ddcb39f78a044b3c5d88cf", "id": {"identifier": "10.6084/m9.figshare.6504074", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::bee4a1caeb42a8a8aaaa941766fc0f80", "id": {"identifier": "10.6084/m9.figshare.6504074.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Silva K.F.", "Frazílio F.O.", "Jardim P.H.A.", "Santos L.M.", "Azuaga L.B.S.", "Albuquerque V. B.", "Silva A.M."], "localIdentifier": [{"type": "doi", "id": "10.1590/1678-4162-9812"}], "id": "50|dli_resolver::72dd64ee7a32a254cfca7005d2200b43", "relatedPublications": 0, "date": [""], "title": ["Bloqueio do plexo braquial em um tamanduá-mirim (Tamandua tetradactyla) utilizando estimulador de nervos periféricos: relato de caso"], "relatedDatasets": 2}
268
{"typology": "publication", "publisher": ["American Physical Society (APS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::0541e91e4a8ed1826d2ed5046d59fb90", "id": {"identifier": "10.17182/hepdata.20447.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::738d1a91fe3448e9b8377ec3468a9537", "id": {"identifier": "10.17182/hepdata.20447", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "A search for supersymmetric electron production via the reaction e/sup +/e/sup -/..-->..e/sup + -/gamma-tildee/sup - +/ followed by the decay e/sup - +/..-->..e/sup - +/gamma-tilde has been performed with the MAC detector at the electron-positron storage ring PEP. No candidates were found in a sample corresponding to an integrated luminosity of 36.4 pb/sup -1/. For a massless gamma-tilde this corresponds to a lower limit on the e mass of 22.4 GeV/c/sup 2/ at 95% confidence level.", "author": ["Blume H. T.", "Maruyama T.", "Lynch H. L.", "Zdarko R. W.", "Prepost R.", "Kaye H. S.", "Wald H. B.", "Clearwater S. H.", "Johnson J. R.", "Rosenberg L. J.", "Smith J. G.", "Piccolo M.", "Shambroom W. D.", "Ronga F.", "Hurst R. B.", "De Sangro R.", "Meyer O. A.", "Marini A.", "Lee H. Y.", "Read A. L.", "Venutti J. P.", "von Goeler E.", "Groom D. E.", "Coombes R. W.", "Goderre G. P.", "Rich K.", "Wiser D. E.", "Fernandez E.", "Weinstein Roy", "Ford W. T.", "Chadwick G. B.", "Lau K. H.", "Delfino M. C.", "Lavine T. L.", "Gettner M. W.", "Moromisato J. H.", "Leedy R. E.", "Ritson D. M.", "Heltsley B. K.", "Michalowski S. J.", "Messner R. L.", "Peruzzi I.", "Band H. R.", "Ash W. W.", "Loh E. C."], "localIdentifier": [{"type": "doi", "id": "10.1103/physrevlett.52.22"}], "id": "50|dli_resolver::056b40d6d3b2470b47ee232354513405", "relatedPublications": 0, "date": [""], "title": ["\"Search for Singly Produced Supersymmetric Electrons ine+e−Interactions\""], "relatedDatasets": 2}
269
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::2f2057536f5291b70d7ee5be40d42a2e", "id": {"identifier": "10.3886/icpsr09681.v5", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Tolley, H. D.", "Manton, Kenneth G."], "localIdentifier": [{"type": "icpsr", "id": "43635"}], "relatedPublications": 0, "title": ["Assessing Health Care Costs in the Elderly"], "id": "50|r3d100010255::e6baf6c2999f2bd55eac7761436d60d9"}
270
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::78ef4e1ed15c3806614bfefdd753b48b", "id": {"identifier": "dq075464", "schema": "genbank"}}], "abstract": "", "title": ["Characterisation of the marsupial-specific"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.gene.2005.08.003"}], "id": "50|elsevier____::37dd3931472338c16a5f7ee754fbaf07", "relatedPublications": 0, "date": ["2005"], "relatedDatasets": 1}
271
{"typology": "publication", "publisher": ["European journal of pharmacology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::63118394c15a644000fe11896ba49ed9", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9652372&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::18ff4ad481357e76570d84480a279681", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=9652372&result=sequence_release", "schema": "url"}}], "abstract": "None: Kinin receptors are classified as B1 and B2 based upon agonist and antagonist potencies and cloning and expression studies. Using sequences from human and rat bradykinin B2 receptors, polymerase chain reaction (PCR) was utilized to isolate cDNA from guinea pig lung. The receptor obtained is predicted to have 372 amino acids and shares > 80% sequence homology with human, rat, rabbit and mouse B2 receptors. In competition binding experiments in Chinese hamster ovary (CHO-K1) cells in which the guinea pig cDNA was expressed, [3H]bradykinin was displaced by kinin receptor ligands with an order of potency consistent with a B2 subtype. In CHO cells expressing the guinea pig receptor, bradykinin caused a concentration 45Ca2+ efflux. A B1 receptor agonist, desArg9-bradykinin, also caused 45Ca2+ efflux but with a potency several orders of magnitude lower than bradykinin. Curiously, several B1 and B2 receptor antagonists induced 45Ca2+ efflux, indicating that this receptor may be coupled differently in CHO cells than in native tissues.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "9652372"}], "author": ["Farmer S G", "Powell S J", "Graham A", "Wilkins D E"], "relatedPublications": 0, "id": "50|r3d100010527::f85f7009bb5036cc49a82067440b6198", "title": ["Cloning, sequencing and functional expression of a guinea pig lung bradykinin B2 receptor."], "relatedDatasets": 2}
272
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "references", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a525a8b4fe3a681fc702eea15a045b89", "id": {"identifier": "10.5061/dryad.c6qj0", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a525a8b4fe3a681fc702eea15a045b89", "id": {"identifier": "10.5061/dryad.c6qj0", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Galan, M.", "Ribas Salvador, A.", "-L, Poulle M.", "Guivier, E.", "Voutilainen, L.", "Xuéreb, A.", "Henttonen, H.", "Charbonnel, N.", "Cosson, J. F.", "Chaval, Y."], "localIdentifier": [{"type": "doi", "id": "10.1111/j.1365-294x.2011.05199.x"}], "id": "50|dli_resolver::91dc70a340e5d72b092102c35e96331f", "relatedPublications": 0, "date": [""], "title": ["Landscape genetics highlights the role of bank vole metapopulation dynamics in the epidemiology of Puumala hantavirus"], "relatedDatasets": 2}
273
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::3ba80c8d9534a0942407dda175586997", "id": {"identifier": "10.5517/cc1k8rtd", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Stereospecific α-amination has been accomplished via addition of N-phenyltriazolinedione (PhTAD) to the allylic position of dihydropyrroles. The aim of this study is to evaluate new PhTAD derivatives of biologically active bicyclic dihydropyrroles. Ene reaction was accomplished via addition of PhTAD to the allylic position to react with syn and anti diastereomers for α-amination. The α-amination depends on the stereochemistry, proceeding faster with syn than anti diastereoisomers. Steric hindrance from sulfide substituent slows down the transformation. Although the results are in accordance with an ene reaction followed by 1,3-shift of the urazole moiety, deuteration at the allylic position by simply stirring the diastereoisomeric dihydropyrroles in MeOD revealed a [1,3-H] shift. The stereospecificity of the transformation is attributed to steric hindrance during the allylic transposition step.", "author": ["Georgiou Dimitra", "Gul Melek", "Dernektsi Eleni", "Szafert Sławomir", "Elemes Yiannis", "Pelit Emel", "Lis Tadeusz", "Oikonomou Kosmas"], "localIdentifier": [{"type": "doi", "id": "10.1007/s11164-016-2681-x"}], "id": "50|dli_resolver::361cd52570878e5a25c1f3e6d3465f59", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis of PhTAD-substituted dihydropyrrole derivatives via stereospecific C–H amination\""], "relatedDatasets": 1}
274
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c6350009614287b784e700afa36bd89d", "id": {"identifier": "10.5517/ccrlssw", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The isolated cyclopentadiene moiety in a fullerene multi-adduct derivative reacts readily with dienophiles to form [4 + 2] cycloaddition products.", "author": ["Gan Liangbing", "Yao Jiayao", "Xiao Zuo", "Zhang Wen-Xiong", "Zhang Jianxin", "Yang Xiaobing"], "localIdentifier": [{"type": "doi", "id": "10.1039/b817300a"}], "id": "50|dli_resolver::3c7085217500f11bcc2a465cb3555efd", "relatedPublications": 0, "date": [""], "title": ["\"Switched role of fullerene in the Diels–Alder reaction: facile addition of dienophiles to the conjugated fullerenediene moiety\""], "relatedDatasets": 1}
275
{"typology": "publication", "publisher": ["Emerging infectious diseases"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::aa613fd49563c03d1a16b15dcc71962a", "id": {"identifier": "u03396", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::712c0256e2b21f77120628d042d29eb1", "id": {"identifier": "d45192", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::90cfb9428d452ba21bbf50d3df50daa5", "id": {"identifier": "u42299", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7c6083849c3679e372b11ef2db6b0548", "id": {"identifier": "u42284", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::6ac7040efec227b104849484f0614639", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16032795&result=noncoding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b832178567537e8ffcfe6a1bb9a0bf51", "id": {"identifier": "u28503", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::74dc080656dacd6e05dd3f85611fcc2c", "id": {"identifier": "ay536513", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::559bd7c93cbce8204ec2da944bc18eac", "id": {"identifier": "l46688", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7a4c4340d3d64e0012ddf4b6fe0a8ad7", "id": {"identifier": "u42292", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::e75ed4e25a0288a9b4df18899c73ffe1", "id": {"identifier": "ay668955", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::71284a154c44f6050eda5e9eb9b555d6", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16032795&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::21c89854d9ae03b084477c9e9ef1deae", "id": {"identifier": "ay668956", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ba113bf657e89f20c595d6b6d77a35ba", "id": {"identifier": "u23211", "schema": "ena"}}], "abstract": "", "author": ["Barbour Alan G", "Barbour, Alan G.", "Bunikis Jonas", "Jonas Bunikis"], "localIdentifier": [{"type": "pbmid", "id": "16032795"}, {"type": "pmid", "id": "16032795"}], "id": "50|dedup_wf_001::8502cd84f35584dc5c3531bc6e8f7df9", "relatedPublications": 0, "date": ["2005-07-01"], "title": ["Third Borrelia species in white-footed mice."], "relatedDatasets": 13}
276
{"typology": "publication", "publisher": ["Science (New York, N.Y.)"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::aba31e30412db51d214ba326687d81cd", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1546313&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::b6e921237dfac27e6ae9c60a41288660", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1546313&result=taxon", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::53cb85b7168fcecf47f44822a614e6d8", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=1546313&result=sequence_release", "schema": "url"}}], "abstract": "None: The yeast transcription factor IIA (TFIIA), a component of the basal transcription machinery of RNA polymerase II and implicated in vitro in regulation of basal transcription, is composed of two subunits of 32 and 13.5 kilodaltons. The genes that encode these subunits, termed TOA1 and TOA2, respectively, were cloned. Neither gene shares obvious sequence similarity with the other or with any other previously identified genes. The recombinant factor bound to a TATA binding protein-DNA complex and complemented yeast and mammalian in vitro transcription systems depleted of TFIIA. Both the TOA1 and TOA2 genes are essential for growth of yeast.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "1546313"}], "author": ["Ranish J A", "Hahn S", "Lane W S"], "relatedPublications": 0, "id": "50|r3d100010527::b4147b40de96007ab225ef13c9f8c331", "title": ["Isolation of two genes that encode subunits of the yeast transcription factor IIA."], "relatedDatasets": 3}
277
{"typology": "publication", "publisher": ["International journal of systematic and evolutionary microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::043b509c0b2c7507871316d2edcb38c7", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21515703&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::43f817192bf16dc235f4e1436dc1dcbb", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21515703&result=read_study", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::32c9c18ef47992a3999360a9f1de33d1", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=21515703&result=noncoding_release", "schema": "url"}}], "abstract": "None: An aerobic, Gram-reaction-negative, chemo-organotrophic bacterium, designated strain SSW-35(T), was isolated from seawater in Jeju, Republic of Korea. Cells were motile, short rods; colonies were circular, smooth, convex, translucent and beige in colour. No diffusible pigment formed on any of the media tested. The bacterium grew at 4-30 °C and pH 7.1-10.1. Phylogenetic analysis based on 16S rRNA gene sequences showed that the organism was related to members of the genus Loktanella, its closest recognized relatives being Loktanella rosea Fg36(T) (98.1% sequence similarity) and Loktanella maricola DSW-18(T) (97.8%). Levels of 16S rRNA gene similarity between strain SSW-35(T) and other recognized species of the genus Loktanella were all <97%. Polar lipid analysis revealed the presence of diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and an unknown lipid as major components, as well as small amounts of two unknown phospholipids. The predominant ubiquinone was Q-10. The major cellular fatty acid was C(18:1) (summed feature 7), and the 3-hydroxy fatty acids detected were C(12:1) 3-OH and C(10:0) 3-OH. The genomic DNA G+C content was 55.0 mol%. In DNA-DNA hybridization experiments, the relatedness values between strain SSW-35(T) and the type strains of the phylogenetically closest recognized species were all <11%. On the basis of the phenotypic and genotypic characteristics, phylogenetic analysis and DNA-DNA relatedness, a novel species, Loktanella tamlensis sp. nov., is proposed. The type strain is SSW-35(T) (=KCTC 12722(T)=JCM 14020(T)).", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1099/ijs.0.029462-0"}, {"type": "pbmid", "id": "21515703"}], "author": ["Lee Soon Dong"], "relatedPublications": 0, "id": "50|r3d100010527::63aadb47034bb62ad95a2049068a887d", "title": ["Loktanella tamlensis sp. nov., isolated from seawater."], "relatedDatasets": 3}
278
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6a41462517ca2dc99c6d8592d591fe65", "id": {"identifier": "ab086256", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::c19dc22944fec878ec9f517d9310d28c", "id": {"identifier": "af445798", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::1b6a883636b92fae4f4dec686ea9eb43", "id": {"identifier": "ay684274", "schema": "ena"}}], "abstract": "", "author": ["Eom, Keeseon S.", "Woon-Mok Sohn", "Duk-Young Min", "Han-Jong Rim", "Jong-Yil Chai", "Bounnaloth Insisiengmay", "Hyeong-Kyu Jeon", "Tai-Soon Yong"], "localIdentifier": [{"type": "pmid", "id": "24327790"}], "id": "50|pubmed______::46d715919ad931b6304e58bc2845d383", "relatedPublications": 0, "date": ["2013-10-31"], "title": ["Human neurocysticercosis case and an endemic focus of Taenia solium in Lao PDR."], "relatedDatasets": 3}
279
{"typology": "publication", "publisher": ["Magnolia Press"], "doiRels": [{"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2f1ef658e54b54fc6f02c23d82f9a886", "id": {"identifier": "10.5281/zenodo.241893", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2e6cd35e55d3b1ad86974aa673bfefbf", "id": {"identifier": "10.5281/zenodo.241894", "schema": "doi"}}, {"relationSemantic": "isNewVersionOf", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::2c7577340215a5f040bfd870c05c249a", "id": {"identifier": "10.15468/3ohc7o", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::954ededef3cd075914a76e7f608b29dd", "id": {"identifier": "10.5281/zenodo.241895", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["GUZMÁN ALI ABADALLAN", "JOYA DANIEL CHIRIVI"], "localIdentifier": [{"type": "doi", "id": "10.11646/zootaxa.3920.3.6"}], "id": "50|dli_resolver::31b20df364b896c2b3b6f412d6efa763", "relatedPublications": 0, "date": [""], "title": ["<p><strong>The first troglomorphic species of the genus <em>Phrynus</em> Lamarck, 1801 </strong><strong>(Amblypygi: Phrynidae) from Mexico</strong></p>"], "relatedDatasets": 7}
280
{"typology": "publication", "publisher": ["The Journal of experimental medicine"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::d6746e4a0b2dbe39ac4ba1a723ca0625", "id": {"identifier": "u66670", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::652082b4d4e34b1be32a48655b68bf81", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8996246&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c275b0b68b444a72e51ede0bd35b229b", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8996246&result=sequence_release", "schema": "url"}}], "abstract": "None: The chemokines are a large family of cytokines that control the recruitment of leukocytes in immune and inflammatory responses. We describe the isolation of a novel murine CC chemokine that, based on its biological and structural features, we have named monocyte chemoattractant protein (MCP)-5. MCP-5 mapped to the CC chemokine cluster on mouse chromosome 11 and was most closely related to human MCP-1 in structure (66% amino acid identity). Purified recombinant MCP-5 protein was a potent chemoattractant for peripheral blood monocytes, was only weakly active on eosinophils at high doses, and was inactive on neutrophils. MCP-5 induced a calcium flux in peripheral blood mononuclear cells, but not in purified murine eosinophils or neutrophils. Consistent with these results, MCP-5 induced a calcium flux in human embryonic kidney (HEK)-293 cells transfected with human and murine CCR2, a CC chemokine receptor expressed on monocytes. MCP-5 did not induce a calcium flux in HEK-293 cells transfected with CCR1, CCR3, or CCR5. Constitutive expression of MCP-5 mRNA was detected predominantly in lymph nodes, and its expression was markedly induced in macrophages activated in vitro and in vivo. Moreover, MCP-5 expression was up-regulated in the lungs of mice following aerosolized antigen challenge of sensitized mice, and during the host response to infection with Nippostrongylus brasiliensis. These data indicate that MCP-5 is a novel and potent monocyte active chemokine that is involved in allergic inflammation and the host response to pathogens.", "author": ["Luster A D", "Luster, A. D.", "Maclean, J. A.", "MacLean J A", "Charo, I. F.", "Charo I F", "Sarafi, M. N.", "Garcia-Zepeda, E. A.", "Sarafi M N", "Garcia-Zepeda E A"], "localIdentifier": [{"type": "pbmid", "id": "8996246"}, {"type": "pmid", "id": "8996246"}], "id": "50|dedup_wf_001::7af9899de665e613d6fb168cacf726aa", "relatedPublications": 0, "date": ["1997-01-01"], "title": ["Murine monocyte chemoattractant protein (MCP)-5: a novel CC chemokine that is a structural and functional homologue of human MCP-1."], "relatedDatasets": 3}
281
{"typology": "publication", "publisher": ["SAGE Publications"], "doiRels": [{"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d630164701cde19e9b07f4608fa6e703", "id": {"identifier": "10.3886/icpsr21600.v11", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::fa38ea483d6f8291d8bdec394ac7b523", "id": {"identifier": "10.3886/icpsr21600.v5", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::267c09351444a5a157fa5287cdac0f96", "id": {"identifier": "10.3886/icpsr21600.v3", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::e80f7f14ed6fad42ab28d02d9a88f51b", "id": {"identifier": "10.3886/icpsr21600", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e162c517492eef25a32f53cec118a29f", "id": {"identifier": "10.3886/icpsr21600.v8", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::f337827f73cea4f4a6f20c858ad9e02c", "id": {"identifier": "10.3886/icpsr21600.v2", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::0cf8920131ed3eea73f6408b8583d49f", "id": {"identifier": "10.3886/icpsr21600.v12", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::7a18783ceb2bf978d3d1694afd42ff18", "id": {"identifier": "10.3886/icpsr21600.v18", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::70d6882f3169233bb1ad43a84e28d7f7", "id": {"identifier": "10.3886/icpsr21600.v16", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::28a3412c29a2306e5d203de6c378dbfb", "id": {"identifier": "10.3886/icpsr21600.v17", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b9b18ac1e3ea85d16f60a93c0d2e483a", "id": {"identifier": "10.3886/icpsr21600.v9", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::8f171c2a1960d31465add13ad1f33ec1", "id": {"identifier": "10.3886/icpsr21600.v4", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a69ee5d7ecef8ae3fef5937176d8c311", "id": {"identifier": "10.3886/icpsr21600.v1", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::e4c0fbfa638556ba7720fb78af702dfb", "id": {"identifier": "10.3886/icpsr21600.v15", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::737f244d9c185769364109fe221798c6", "id": {"identifier": "10.3886/icpsr21600.v14", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::d0c84333f54ff90e6f28541bebad0553", "id": {"identifier": "10.3886/icpsr21600.v7", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a120efbf0f79add2d697d34218cee452", "id": {"identifier": "10.3886/icpsr21600.v10", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9b9fcca0e0096eca4a1262c77425f5c3", "id": {"identifier": "10.3886/icpsr21600.v13", "schema": "doi"}}, {"relationSemantic": "documents", "collectedFrom": "Crossref", "dnetId": "60|dedup_wf_001::c9bd0ff2c7326c2543ea73288ae1087c", "id": {"identifier": "10.3886/icpsr21600.v6", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Despite mounds of evidence to suggest that neighborhood structural factors predict violent behavior, almost no attention has been given to how these influences work synergistically (i.e., interact) with an individual’s genetic propensity toward violent behavior. Indeed, two streams of research have, heretofore, flowed independently of one another. On one hand, criminologists have underscored the importance of neighborhood context in the etiology of violence. On the other hand, behavioral geneticists have argued that individual-level genetic propensities are important for understanding violence. The current study seeks to integrate these two compatible frameworks by exploring gene–environment interactions (GxE). Two GxEs were examined and supported by the data (i.e., the National Longitudinal Study of Adolescent Health). Using a scale of genetic risk based on three dopamine genes, the analysis revealed that genetic risk had a greater influence on violent behavior when the individual was also exposed to nei...", "author": ["Barnes J. C.", "Jacobs Bruce A."], "localIdentifier": [{"type": "doi", "id": "10.1177/0886260512448847"}], "id": "50|dli_resolver::fc7b34b04fe07423dd780ba8f237bd2d", "relatedPublications": 0, "date": [""], "title": ["Genetic Risk for Violent Behavior and Environmental Exposure to Disadvantage and Violent Crime"], "relatedDatasets": 19}
282
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9317bb74d77cba3092305be588c0987b", "id": {"identifier": "10.3886/icpsr07896.v2", "schema": "doi"}}, {"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::eabd52cac0b503243e389b9cd8389ccc", "id": {"identifier": "10.3886/icpsr08896.v3", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 2, "relatedUnknown": 0, "externalRels": [], "author": ["Glanville, Jennifer L."], "localIdentifier": [{"type": "icpsr", "id": "11742"}], "relatedPublications": 0, "title": ["Political Socialization or Selection? Adolescent Extracurricular Participation and Political Activity in Early Adulthood"], "id": "50|r3d100010255::850db176935e3f91391f000cac94e9a6"}
283
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1d73d47b9d3ba4776e821c387db6f56e", "id": {"identifier": "10.6084/m9.figshare.c.3308685", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::8d529d415638f84b259036d4fc57855c", "id": {"identifier": "10.6084/m9.figshare.c.3308685.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Increasing trends in vegetation productivity have been identified for the last three decades for many regions in the northern hemisphere including China. Multiple natural and human factors are possibly responsible for the increases in vegetation productivity, while their relative contributions remain unclear. Here we analyzed the long-term trends in vegetation productivity in China using the satellite-derived normalized difference vegetation index (NDVI) and assessed the relationships of NDVI with a suite of natural (air temperature, precipitation, photosynthetically active radiation (PAR), atmospheric carbon dioxide (CO2) concentrations, and nitrogen (N) deposition) and human (afforestation and improved agricultural management practices) factors. Overall, China exhibited an increasing trend in vegetation productivity with an increase of 2.7%. At the provincial scale, eleven provinces exhibited significant increases in vegetation productivity, and the majority of these provinces are located within the nor...", "author": ["Zhou Yu", "Zhang Li", "Xiao Jingfeng"], "localIdentifier": [{"type": "doi", "id": "10.1890/es14-00394.1"}], "id": "50|dli_resolver::701cccc926e785d7df3b90d02a37e0b2", "relatedPublications": 0, "date": [""], "title": ["\"Contributions of natural and human factors to increases in vegetation productivity in China\""], "relatedDatasets": 2}
284
{"typology": "publication", "publisher": ["Journal of invertebrate pathology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::53e50b5d89b23a5321c5e0b00717d054", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=23147105&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::572e662e8c6743c9960beea4ff8e5977", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=23147105&result=noncoding_release", "schema": "url"}}], "abstract": "None: 'Candidatus Cardinium' is an intracellular endosymbiont or parasite frequently occurring in invertebrates including mites and ticks. In this work we report Cardinium bacteria in Astigmata mites and explore their incidence in synanthropic species. Amplification of a 776 bp bacterial 16S rRNA gene fragment, using specific primers, enabled identification of closely related Cardinium sequences in 13 laboratory-reared populations of mites. In addition, Cardinium sequences were identified in three wild mite populations. Large scale screening of these populations showed 100% prevalence of Cardinium, representing the highest incidence compared to other major Chelicerate groups.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jip.2012.11.001"}, {"type": "pbmid", "id": "23147105"}], "author": ["Alejandra, Perotti M.", "Kopecky Jan", "Hubert Jan", "Nesvorna Marta", "Erban Tomas"], "relatedPublications": 0, "id": "50|r3d100010527::4ed1da92d4ffb84df7c4cd44c6109855", "title": ["Cardinium endosymbionts are widespread in synanthropic mite species (Acari: Astigmata)."], "relatedDatasets": 2}
285
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::3ef0ab85e2e228c02c786c5dd017706a", "id": {"identifier": "10.5517/cctfkzr", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The complexation of Eu(III) by 2-hydroxy benzoic acid (2HB) or glycolic acid (GL) was investigated using steady-state and time-resolved laser spectroscopy. Experiments were carried out in H 2 O as well as in D 2 O in the temperature range of           80    K    T    290    K       . The Eu(III) luminescence spectra and luminescence decay times were evaluated with respect to the temperature dependence of (i) the luminescence decay time   τ     τ       , (ii) the energy of the                D            5      0    →      F            7      0          transition, (iii) the width of the                D            5      0    →      F            7      0          transition, and (iv) the asymmetry ratio calculated from the luminescence intensities of the                D            5      0    →      F            7      2          and                D            5      0    →      F            7      1          transition, respectively. The differences in ligand-related luminescence quenching are discussed. Based on the temperature dependence of the luminescence decay times an activation energy for the ligand-specific non-radiative deactivation in Eu(III)–2HB or Eu(III)–GL complexes was determined. It is stressed that ligand-specific quenching processes (other than OH quenching induced by water molecules) need to be determined and considered in detail, in order to extract speciation-relevant information from luminescence data (e.g., estimation of the number of water molecules   n H 2 O        n      H    2    O          in the first coordination sphere of Eu(III)). In case of 2HB, conclusions drawn from the evaluation of the Eu(III) luminescence are compared with results of a X-ray structure analysis.", "author": ["Eidner S.", "Schilde U.", "Kumke M.U.", "Kuke S.", "Marmodée B."], "localIdentifier": [{"type": "doi", "id": "10.1016/j.saa.2009.12.080"}], "id": "50|dli_resolver::e69f3ee228dc8b9354401ee8fdfb9c9b", "relatedPublications": 0, "date": [""], "title": ["\"Intramolecular deactivation processes in complexes of salicylic acid or glycolic acid with Eu(III)\""], "relatedDatasets": 1}
286
{"typology": "publication", "publisher": ["Journal of applied microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::71bbd08c146a00e874015d77451fda54", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24995828&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::8a426591bd6af9292036f0676a54910a", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24995828&result=noncoding_release", "schema": "url"}}], "abstract": "AIMS: To describe microbial diversity, biofilm composition and biogeochemical potential within biofilms in the water overlying uranium tailings characterized by high pH, high metal concentration and low permeability. METHODS AND RESULTS: To estimate microbial diversity in biofilms formed in water columns overlying uranium mine tailings, culture-dependent and culture-independent methods were employed. High-throughput sequencing revealed the presence of 11 phyla; however, the majority of the sequences were affiliated with four major lineages (Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes) as confirmed by culture-based methods. Dominant phylotypes were closely related to methylotrophs (Methylobacterium) and bacterial groups able to utilize complex hydrocarbons (Aquabacterium and Dechloromonas). Microbial diversity in biofilms from the 13 m depth was significantly different that in biofilms from 1 to 41 m (P < 0·05). Phylotypes closely related to iron-reducing bacteria were identified at each depth; whereas sulphate-, thio-sulphate-, sulphite- and sulphur-reducing bacteria, at low abundance, were only detected at lower depths. Confocal scanning laser microscopy (CSLM) was used to investigate polymer quantity and composition of the biofilm components, and principal component analysis of the CLSM data revealed that the relative abundance of α-L-fucose and N-acetyl-glucosamine/lipopolysaccharide residues separated tailings-water interface biofilms from those from other depths. Reduced (ferrous) iron was detected within all the biofilm samples examined by scanning X-ray transmission microscopy. CONCLUSIONS: Microbial communities within the water column covering a highly alkaline uranium tailings body form biofilms with microenvironments where iron reduction takes place. SIGNIFICANCE AND IMPACT OF THE STUDY: This study demonstrates the biogeochemical potential of microbial biofilm communities in the water column covering an alkaline uranium tailings body; specifically, the nature of the bacterial groups detected (Aquabacterium, Dechloromonas) and the presence of reduced iron suggest that complex hydrocarbons are available for bacterial growth and geochemical change, such as iron reduction, can occur even though the system bulk phase is predominantly oxic.", "doiRels": [], "localIdentifier": [{"type": "doi", "id": "10.1111/jam.12593"}, {"type": "pbmid", "id": "24995828"}], "author": ["Lawrence J R", "Khan N H", "Warner J", "Bondici V F", "Yergeau E", "Swerhone G D W", "Dynes J J", "Wolfaardt G M", "Korber D R"], "relatedPublications": 0, "id": "50|r3d100010527::f4b505159ad8a68d6e5aa04296aac19e", "title": ["Biogeochemical activity of microbial biofilms in the water column overlying uranium mine tailings."], "relatedDatasets": 2}
287
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ccb27d0201cd3fd9c3d81b55dd32c8f1", "id": {"identifier": "10.5517/cc10472g", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d2a4fe546c2d38e117af44c8917f89ec", "id": {"identifier": "10.5517/cc10475k", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::3fb89d26fcbac8593bd07e1a6f2bb3e5", "id": {"identifier": "10.5517/cc10476l", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::69f5cf754e38cc097de04892776ce77f", "id": {"identifier": "10.5517/cc10473h", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::040d67710ba392cbf8586fd4c7466b21", "id": {"identifier": "10.5517/cc10474j", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Abstract#R##N##R##N#Organometallic rhodium complexes have been reported to exhibit promising anticancer activity and some examples have been investigated more extensively over the last years. Based on recent successes of cytotoxic rhodium compounds, this work describes the synthesis and characterization of organorhodium(III) complexes with 3-hydroxyflavones as bidentate ligands and η5-coordinated pentamethylcyclopentadienyl (Cp*). The organorhodium compounds were synthesized and characterized by means of NMR spectroscopy and single crystals of the compounds were characterized by X-ray diffraction analysis. Interestingly, the rhodium complexes were isolated with methanol or triflate coordinated to the central rhodium atom, yielding positively-charged and neutral complexes, respectively. However, none of the complexes prepared were sufficiently soluble in aqueous media to allow testing their cytotoxicity.", "author": ["Roller Alexander", "Hartinger Christian G.", "Schwarz Martina B.", "Kurzwernhart Andrea", "Kandioller Wolfgang", "Keppler Bernhard K."], "localIdentifier": [{"type": "doi", "id": "10.1002/zaac.201300145"}], "id": "50|dli_resolver::31811c45fd8434f40e24a05782c9d6cb", "relatedPublications": 0, "date": [""], "title": ["\"Rhodium(Cp*) Compounds with Flavone-derived Ligand Systems: Synthesis and Characterization\""], "relatedDatasets": 5}
288
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "OpenAIRE", "datasourceId": "dli_________::openaire"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "references", "collectedFrom": "OpenAIRE", "dnetId": "60|openaire____::b7c7781e264170080bcb8923717d1669", "id": {"identifier": "10.3886/icpsr07629.v2", "schema": "url"}}], "abstract": "Econometric evidence suggests that the non-accelerating inflation rate of unemployment (the NAIRU) has risen sharply in Europe in the past fifteen years. In the first section of this paper, I review the recent proliferation of supply-side models that say interesting things about why the NAIRU hasincreased so substantially in Europe. In the second section of the paper, I employ a simple example to show how aggregate demand should optimally be managed in response to transitory and permanent supply shocks, especially those shocks that cause a persistent rise in the NAIRU. Also, I discuss some policy implications of the increasingly popular \"hysteresis hypothesis, that the NAIRU itself is influenced by the time path of actual unemployment.", "author": ["Jeffrey Sachs"], "localIdentifier": [{"type": "openaire", "id": "oai:dnet:od_______645::5eae098a5163d5bc759a3a4ab8c33a79"}], "id": "50|dli_resolver::a110cc90f82ddd74d0e5e0fd10a9ae6f", "relatedPublications": 0, "date": [""], "title": ["High Unemployment in Europe: Diagnosis and Policy Implications"], "relatedDatasets": 1}
289
{"typology": "publication", "doiRels": [{"relationSemantic": "cites", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::bdef0476d7a5890e8921a2e09e6dcee8", "id": {"identifier": "10.3886/icpsr04138.v5", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "ICPSR", "datasourceId": "dli_________::r3d100010255"}], "relatedDatasets": 1, "relatedUnknown": 0, "externalRels": [], "author": ["Office of Applied Studies"], "localIdentifier": [{"type": "icpsr", "id": "45266"}], "relatedPublications": 0, "title": ["Youths' Exposure to Substance Use Prevention Messages: 2003"], "id": "50|r3d100010255::d7df45fbf08b1ad2650faa9083e02b38"}
290
{"typology": "publication", "publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::d7fc28c55e2a96d5dcac2cb8d27813eb", "id": {"identifier": "10.6084/m9.figshare.5487253", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::844f4b11ab1189a2454bf304e4125d61", "id": {"identifier": "10.6084/m9.figshare.5487253.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Short Megan", "Vahtera Varpu"], "localIdentifier": [{"type": "doi", "id": "10.1080/00222933.2017.1380241"}], "id": "50|dli_resolver::bee130fb734b945078eae52ea08f7bb1", "relatedPublications": 0, "date": [""], "title": ["\"Phylogenetic relationships of millipedes in the subclass Penicillata (Diplopoda) with a key to the genera\""], "relatedDatasets": 2}
291
{"typology": "publication", "publisher": ["International Union of Crystallography (IUCr)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::04fdd46850256270cc797c1008249619", "id": {"identifier": "10.5517/ccvldg8", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "In the centrosymmetric title complex, [Ni(C7H6NO2)2(H2O)2], the NiII atom, located on an inversion center, is six-coordinated in a distorted octa­hedral geometry defined by two N and four O atoms from the two chelating 2-(2-pyrid­yl)acetate ligands and two aqua ligands. The mol­ecules form a three-dimensional framework by O—H⋯O hydrogen bonds and aromatic π–π stacking inter­actions, with a centroid–centroid distance of 3.506 (3) A.", "author": ["Huang Rong", "Li Hao-Liang", "Zhou Hong", "Zhao Lei"], "localIdentifier": [{"type": "doi", "id": "10.1107/s1600536810030904"}], "id": "50|dli_resolver::90b5753cbb85419055da70fab337c257", "relatedPublications": 0, "date": [""], "title": ["\"trans-Diaquabis2-(2-pyridyl)acetato-κ2N,Onickel(II)\""], "relatedDatasets": 1}
292
{"typology": "publication", "publisher": ["American Meteorological Society"], "doiRels": [{"relationSemantic": "isVariantFormOf", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::45a0c9a0b9a8921ecf9c96f7abdd5140", "id": {"identifier": "10.7916/d8jq10z5", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The El Nino-Southern Oscillation (ENSO) phenomenon significantly impacts rainfall and ensuing crop yields in many parts of the world. In Australia, El Nino events are often associated with severe drought conditions. However, El Nino events differ spatially and temporally in their manifestations and impacts, reducing the relevance of ENSO-based seasonal forecasts. In this analysis, three putative types of El Nino are identified among the 24 occurrences since the beginning of the twentieth century. The three types are based on coherent spatial patterns (footprints) found in the El Nino impact on Australian wheat yield. This bioindicator reveals aligned spatial patterns in rainfall anomalies, indicating linkage to atmospheric drivers. Analysis of the associated ocean-atmosphere dynamics identifies three types of El Nino differing in the timing of onset and location of major ocean temperature and atmospheric pressure anomalies. Potential causal mechanisms associated with these differences in anomaly patterns need to be investigated further using the increasing capabilities of general circulation models. Any improved predictability would be extremely valuable in forecasting effects of individual El Nino events on agricultural systems.", "author": ["Stone R. C.", "Potgieter A. B.", "Hammer G. L.", "Meinke H.", "Goddard L."], "localIdentifier": [{"type": "doi", "id": "10.1175/jcli3349.1"}], "id": "50|dli_resolver::52570fca5bd7d36a6f24a62a8284496d", "relatedPublications": 0, "date": [""], "title": ["Three Putative Types of El Niño Revealed by Spatial Variability in Impact on Australian Wheat Yield"], "relatedDatasets": 1}
293
{"typology": "publication", "publisher": ["PloS one"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::e69d8e7efa3c8cc1936863b07799d605", "id": {"identifier": "jx867116", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5c9ea52161dd4cda3d77574f4f1a031e", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24298298&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::d6c702bd8ebe83110a6b604efe590c87", "id": {"identifier": "jx867113", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::917a0d87a6b3c4fd4cca691971974b19", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=24298298&result=coding_release", "schema": "url"}}], "abstract": "None: Transcription factors in the CNC-bZIP family (NFE2, NRF1, NRF2 and NRF3) regulate genes with a wide range of functions in response to both physiological and exogenous signals, including those indicating changes in cellular redox status. Given their role in helping to maintain cellular homeostasis, it is imperative to understand the expression, regulation, and function of CNC-bZIP genes during embryonic development. We explored the expression and function of six nrf genes (nfe2, nrf1a, nrf1b, nrf2a, nrf2b, and nrf3) using zebrafish embryos as a model system. Analysis by microarray and quantitative RT-PCR showed that genes in the nrf family were expressed throughout development from oocytes to larvae. The spatial expression of nrf3 suggested a role in regulating the development of the brain, brachia and pectoral fins. Knock-down by morpholino anti-sense oligonucleotides suggested that none of the genes were necessary for embryonic viability, but nfe2 was required for proper cellular organization in the pneumatic duct and subsequent swim bladder function, as well as for proper formation of the otic vesicles. nrf genes were induced by the oxidant tert-butylhydroperoxide, and some of this response was regulated through family members Nrf2a and Nrf2b. Our results provide a foundation for understanding the role of nrf genes in normal development and in regulating the response to oxidative stress in vertebrate embryos.", "author": ["Stegeman, John J.", "Timme-Laragy Alicia R", "Goldstone Jared V", "Stegeman John J", "Smolowitz Roxanna M", "Goldstone, Jared V.", "Timme-Laragy, Alicia R.", "Hahn, Mark E.", "Smolowitz, Roxanna M.", "Mcarthur, Andrew G.", "Williams, Larissa M.", "Williams Larissa M", "McArthur Andrew G", "Hahn Mark E"], "localIdentifier": [{"type": "pmid", "id": "24298298"}, {"type": "pbmid", "id": "24298298"}, {"type": "doi", "id": "10.1371/journal.pone.0079574"}], "id": "50|dedup_wf_001::3e027f98fdae2c00dcc5eb8342e34487", "relatedPublications": 0, "date": ["2013-10-24"], "title": ["Developmental expression of the Nfe2-related factor (Nrf) transcription factor family in the zebrafish, Danio rerio."], "relatedDatasets": 4}
294
{"typology": "publication", "publisher": ["Molecular biology and evolution"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::3b5246cfdf06ed26a366a3d8648e4dda", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18390478&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::091d752bce395e201e6bbc43b0d89ec3", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=18390478&result=coding_release", "schema": "url"}}], "abstract": "None: Members of the CYCLOIDEA (CYC)/TEOSINTE-BRANCHED1 (TB1) group of transcription factors have been implicated in the evolution of zygomorphic (i.e., bilaterally symmetric) flowers in Antirrhinum and Lotus and the loss of branching phenotype during the domestication of maize. The composite inflorescences of sunflower (Helianthus annuus L. Asteraceae) contain both zygomorphic and actinomorphic (i.e., radially symmetric) florets (rays and disks, respectively), and the cultivated sunflower has evolved an unbranched phenotype in response to domestication from its highly branched wild progenitor; hence, genes related to CYC/TB1 are of great interest in this study system. We identified 10 members of the CYC/TB1 gene family in sunflower, which is more than found in any other species investigated to date. Phylogenetic analysis indicates that these genes occur in 3 distinct clades, consistent with previous research in other eudicot species. A combination of dating the duplication events and linkage mapping indicates that only some of the duplications were associated with polyploidization. Cosegregation between CYC-like genes and branching-related quantitative trait loci suggest a minor, if any, role for these genes in conferring differences in branching. However, the expression patterns of one gene suggest a possible role in the development of ray versus disk florets. Molecular evolutionary analyses reveal that residues in the conserved domains were the targets of positive selection following gene duplication. Taken together, these results indicate that gene duplication and functional divergence have played a major role in diversification of the sunflower CYC gene family.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "18390478"}, {"type": "doi", "id": "10.1093/molbev/msn001"}], "author": ["Leebens-Mack James H", "Chapman Mark A", "Burke John M"], "relatedPublications": 0, "id": "50|r3d100010527::e4fa86b96c5fc448af1cf7e87f83bf72", "title": ["Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA gene family."], "relatedDatasets": 2}
295
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::bba881239cc6ed0a150a85e25da32ec5", "id": {"identifier": "10.5517/ccdc.csd.cc1mmk5z", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "A convenient protocol for the synthesis of sulfonylated benzofurans via Ag-catalyzed oxidative cyclization has been established. Chemically stable and easily available sodium sulfinates were used as the sulfonylation reagents and building block for the heterocycle construction. With this novel strategy, various benzofurans bearing dual functional groups could be obtained in good yields with high chemo- and regioselectivities under mild conditions.", "author": ["Yi Songjian", "Wu Wanqing", "Luo Di", "Huang Wei", "Jiang Huanfeng"], "localIdentifier": [{"type": "doi", "id": "10.1021/acs.orglett.7b00980"}], "id": "50|dli_resolver::02b957b3a5f6b8ae87b5442091ae857a", "relatedPublications": 0, "date": [""], "title": ["\"Ag-Catalyzed Oxidative Cyclization Reaction of 1,6-Enynes and Sodium Sulfinate: Access to Sulfonylated Benzofurans\""], "relatedDatasets": 1}
296
{"typology": "publication", "publisher": ["Wiley-Blackwell"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::a0a33231373a55acf7997657c752b5e5", "id": {"identifier": "10.5517/cc118hqj", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Abstract#R##N##R##N#Pentaarylpyridines were conveniently prepared in one step by pentafold Suzuki–Miyaura reactions of pentachloropyridine. Moreover, site selective reactions were performed, leading to various substituted arylpyridines. Pentaarylpyridines were studied in detail by means of DFT calculations and by optical spectroscopy.", "author": ["Spannenberg Anke", "Lochbrunner Stefan", "Ehlers Peter", "Kühn Oliver", "Reimann Sebastian", "Kohse Stefanie", "Ghochikyan Tariel V.", "Petrosyan Andranik", "Ludwig Ralf", "Saghyan Ashot S.", "Langer Peter", "Surkus Annette E."], "localIdentifier": [{"type": "doi", "id": "10.1002/adsc.201400164"}], "id": "50|dli_resolver::812710b9b5d9597ab6508f9fbcbb1e08", "relatedPublications": 0, "date": [""], "title": ["\"Site Selective Synthesis of PentaarylpyridinesviaMultiple Suzuki-Miyaura Cross-Coupling Reactions\""], "relatedDatasets": 1}
297
{"typology": "publication", "publisher": ["Developmental biology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::51de13124eb3a02c29b5fba714a030df", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8660867&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::2759dff5eb168a1542cd3548d20d3ccc", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=8660867&result=sequence_release", "schema": "url"}}], "abstract": "None: We report the cloning, characterization, and targeting of an Sp1-related zinc finger transcription factor gene from the distal arm of mouse chromosome 12. This gene, previously identified in rats and humans and designated sp4, is homologous to the Drosophila buttonhead (btd) gene, which is expressed in the head region of developing flies. Similarly, in situ hybridizations show that sp4 is highly expressed in mouse embryos in the developing central nervous system (CNS). Expression of sp4 is seen as early as Day 9 of development, where transcripts are abundant in the posterior neuropore. Expression in later embryos is detected throughout the CNS as well as in other structures, including the nasal mucosa, the vomeronasal organ, the epithelium of the lung and intestinal tract, the testes, and the developing teeth. Northern blot analysis showed sp4 expression in the adult brain and other tissues. Gene targeting by homologous recombination was used to determine the role of sp4 during mouse development. Two-thirds of homozygous mutants die within the first few days after birth and those that survive are smaller than their wild-type littermates. While fertility of the female mutants appears normal, homozygous mutant males do not breed, despite having histologically intact testes containing mature sperm. sp4/sp4 mutant males fail to copulate, indicating that this gene is required for normal male reproductive behavior.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "8660867"}], "author": ["Supp D M", "Smith E P", "Branford W W", "Witte D P", "Potter S S"], "relatedPublications": 0, "id": "50|r3d100010527::40846222a8cd0de81aa21136da83c918", "title": ["Sp4, a member of the Sp1-family of zinc finger transcription factors, is required for normal murine growth, viability, and male fertility."], "relatedDatasets": 2}
298
{"typology": "publication", "publisher": ["FapUNIFESP (SciELO)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::dfd42572040525a6b33fb0ef282e6aa5", "id": {"identifier": "10.6084/m9.figshare.6273215.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::9baa37457fc64fcae00c6723c075086a", "id": {"identifier": "10.6084/m9.figshare.6273215", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Boldrin Andressa Juliana", "Batista José Anderson do Nascimento"], "localIdentifier": [{"type": "doi", "id": "10.1590/s1413-41522018170663"}], "id": "50|dli_resolver::d75f40f4b65c712606c8080c97f23675", "relatedPublications": 0, "date": [""], "title": ["Avaliação do desempenho hidráulico de um sistema de drenagem de águas pluviais urbanas"], "relatedDatasets": 2}
299
{"typology": "publication", "publisher": ["Applied and environmental microbiology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::376c91aaa560b1968df82f04fb846267", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=19201976&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::ec523d69e331897eb89c95919ac9262d", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=19201976&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::12ae3202380e1800c5140e4debd12a05", "id": {"identifier": "eu883966", "schema": "ena"}}], "abstract": "None: Nearly all high-molecular-weight (HMW) dissolved organic nitrogen and part of the particulate organic nitrogen in the deep sea are present in hydrolysis-resistant amides, and so far the mechanisms of biodegradation of these types of nitrogen have not been resolved. The M12 family is the second largest family in subclan MA(M) of Zn-containing metalloproteases and includes most enzymes from animals and only one enzyme (flavastacin) from a human-pathogenic bacterium (Flavobacterium meningosepticum). Here, we characterized the novel M12 protease myroilysin with elastinolytic activity and collagen-swelling ability from the newly described deep-sea bacterium Myroides profundi D25. Myroilysin is a monomer enzyme with 205 amino acid residues and a molecular mass of 22,936 Da. It has the same conserved residues at the four zinc ligands as astacin and very low levels of identity (<or=40%) to other metalloproteases, indicating that it is a novel metalloprotease belonging to subfamily M12A. Myroilysin had broad specificity and much higher elastinolytic activity than the bacterial elastinase pseudolysin. To our knowledge, it is the first reported elastase in the M12 family. Although it displayed very low activity with collagen, myroilysin had strong collagen-swelling ability and played a synergistic role with collagenase in collagen hydrolysis. It can be speculated that myroilysin synergistically interacts with other enzymes in its in situ biotic assemblage and that it may play an important role in the degradation of deep-sea HMW organic nitrogen.", "author": ["Bai-Cheng Zhou", "Bian Fei", "Zhao Guo-Yan", "Hai-Lun He", "Bin-Bin Xie", "Zhang Yu-Zhong", "Hui-Lin Zhao", "Guo-Yan Zhao", "He Hai-Lun", "Zhou Bai-Cheng", "Yu-Zhong Zhang", "Xie Bin-Bin", "Xiu-Lan Chen", "Chen Xiu-Lan", "Zhao Hui-Lin", "Fei Bian"], "localIdentifier": [{"type": "doi", "id": "10.1128/aem.02285-08"}, {"type": "pmid", "id": "19201976"}, {"type": "pbmid", "id": "19201976"}], "id": "50|dedup_wf_001::c9b4accba67a4da0f1dd9b1e82377dd4", "relatedPublications": 0, "date": ["2009-02-05"], "title": ["Ecological function of myroilysin, a novel bacterial M12 metalloprotease with elastinolytic activity and a synergistic role in collagen hydrolysis, in biodegradation of deep-sea high-molecular-weight organic nitrogen."], "relatedDatasets": 3}
300
{"typology": "publication", "publisher": ["Vaccine"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::e0f91ffaefdbc00059c942414325d7ca", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3840634&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::63548a74d783e1a192a810d89e9b2837", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=3840634&result=sequence_release", "schema": "url"}}], "abstract": "None: Two mutants (ts1 and ts651) with a temperature sensitive defect in the intracellular transport of the haemagglutinin from the rough endoplasmic reticulum to the plasma membrane have been analysed. Nucleotide sequencing of the haemagglutinin revealed with each mutant two point mutations that are located in the stem region of the molecule.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "3840634"}], "author": ["Klenk H D", "Garten W", "Schuy W", "Scholtissek C", "Naruse H", "Kuroda K"], "relatedPublications": 0, "id": "50|r3d100010527::0be476246dd523a6d5eaece5a5570121", "title": ["Haemagglutinin transport mutants."], "relatedDatasets": 2}
301
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::6955a0e0ad1a58e144dbe0d8e34292b2", "id": {"identifier": "ay016306", "schema": "genbank"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::05d8f68ad6ecef86b2bf8c2280567112", "id": {"identifier": "af415170", "schema": "genbank"}}], "abstract": "", "title": ["Asexual life history by biflagellate zoids in"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.aquabot.2009.06.006"}], "id": "50|elsevier____::2d320e0d697397546dd4166dff0bd0c5", "relatedPublications": 0, "date": ["2009"], "relatedDatasets": 2}
302
{"typology": "publication", "publisher": ["Journal of bacteriology"], "doiRels": [], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::c6794888b87fce0d1becc0b1f989f5f3", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16321946&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::10497be74e064436e0e3f5804c6206c0", "id": {"identifier": "ay955247", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "", "dnetId": "60|pubmed______::d4581062a8c4a0228bae1e2f622f22e2", "id": {"identifier": "u00096", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::89c10d9a3d4c43389c528474ce27c7f1", "id": {"identifier": "al935263", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::77c839ea118998768a5341043ab16da9", "id": {"identifier": "ay955242", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::fc18d893e16ff94fa2870ceb499152b6", "id": {"identifier": "ay955239", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::dcfbf65763b238241c4120b0e0a6c895", "id": {"identifier": "ay955236", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::45c8c1e01d1c1fc96fc4633659c85284", "id": {"identifier": "ay955243", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::cd3906d87b4c1dea50382b87dc13a2c5", "id": {"identifier": "ay955246", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::8af24c2c70970023c938a01d5db4507c", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=16321946&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::58adc9ec2d96c70bb782da8430ca48e6", "id": {"identifier": "ay955251", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::20bb56e6a41c55dada58c708efcbbca3", "id": {"identifier": "ay955238", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::b6ae0128d0a191861cfc7bc8f402751e", "id": {"identifier": "ay955248", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::0dd89865dab97106d6c2dc56e5f57981", "id": {"identifier": "cp000024", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::0669d2071da292515d080de931072974", "id": {"identifier": "ay955250", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::a355fdfbd865161efe83d3148c521896", "id": {"identifier": "ay955241", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::8b05abc4161ac90871ab11aba62dd4e7", "id": {"identifier": "ay955244", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::cac35f7dd6014af5939c19540e3465ef", "id": {"identifier": "ay955249", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7d3e08e9d9fe4e599e549d4fc0c75ca5", "id": {"identifier": "al592022", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ccd19be1c5b78da254a32510a64d32da", "id": {"identifier": "ay955234", "schema": "ena"}}], "abstract": "None: Five clp genes (clpC, clpB, clpP1, clpP2, and clpX), representing chaperone- and protease-encoding genes, were previously identified in Bifidobacterium breve UCC 2003. In the present study, we characterize the B. breve UCC 2003 clpP locus, which consists of two paralogous genes, designated clpP1 and clpP2, whose deduced protein products display significant similarity to characterized ClpP peptidases. Transcriptional analyses showed that the clpP1 and clpP2 genes are transcribed in response to moderate heat shock as a bicistronic unit with a single promoter. The role of a clgR homologue, known to control the regulation of clpP gene expression in Streptomyces lividans and Corynebacterium glutamicum, was investigated by gel mobility shift assays and DNase I footprint experiments. We show that ClgR, which in its purified form appears to exist as a dimer, requires a proteinaceous cofactor to assist in specific binding to a 30-bp region of the clpP promoter region. In pull-down experiments, a 56-kDa protein copurified with ClgR, providing evidence that the two proteins also interact in vivo and that the copurified protein represents the cofactor required for ClgR activity. The prediction of the ClgR three-dimensional structure provides further insights into the binding mode of this protein to the clpP1 promoter region and highlights the key amino acid residues believed to be involved in the protein-DNA interaction.", "author": ["Carlos Canchaya", "Zhang Ziding", "Marco Ventura", "Douwe van Sinderen", "Ventura Marco", "Canchaya Carlos", "Kenny, John G.", "Cronin Michelle", "Fitzgerald Gerald F", "Fitzgerald, Gerald F.", "Kenny John G", "van Sinderen Douwe", "Michelle Cronin", "Ziding Zhang"], "localIdentifier": [{"type": "pmid", "id": "16321946"}, {"type": "pbmid", "id": "16321946"}], "id": "50|dedup_wf_001::0186c8127d6ccd3fd9642972ee7dead8", "relatedPublications": 0, "date": ["2005-12-01"], "title": ["The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003."], "relatedDatasets": 26}
303
{"typology": "publication", "publisher": ["American Chemical Society (ACS)"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::87efb54bc603b80fdf62a242b1072751", "id": {"identifier": "2onb", "schema": "pdb"}}], "abstract": "Thymidylate synthase (TS) catalyzes the reaction in which the nucleotide deoxyuridylate (dUMP) is reductively methylated by the folate co-substrate 5,10-methylenetetrahydrofolate (CH2H4folate) to form thymidylate (TMP) and dihydrofolate (1). Substrates are bound in an ordered manner, with dUMP binding at the active site prior to CH2H4PteGlu. A cysteine residue (Cys195 in hTS) at the active site attacks the 6-position of the pyrimidine base of the nucleotide, resulting in the formation of a covalent bond between TS and the nucleotide and activating the 5-position of the nucleotide for subsequent covalent-bond formation with the C-11 substituent of CH2H4folate (reviewed in 2–4). The enzyme is the sole source of de novo synthesized thymidylate and its inhibition leads to apoptosis of rapidly dividing cells such as cancer cells, an effect sometimes referred to as thymineless death (5). This phenomenon is exploited in therapeutic protocols utilizing TS inhibitors, such as raltitrexed, pemetrexed or pro-drugs such as 5-fluorouracil and 5-fluorodeoxyuridine that are metabolized to TS inhibitors. The inhibitors are either nucleotide analogs such as 5-fluorodeoxyuridylate (FdUMP) or folate analogues that are collectively referred to as antifolates. The effectiveness of TS-directed chemotherapy is often limited by emerging resistance, which usually arises from an increase in intracellular TS protein levels by a factor of 2–4 (reviewed in 6). Two major mechanisms leading to increased hTS levels have been proposed. In one mechanism, the intracellular turnover of hTS protein is decreased upon formation of inhibitory complexes with drugs (6, 7). The other mechanism is related to hTS protein binding to its own mRNA and inhibiting its translation. The formation of inhibitory complexes by hTS competes with mRNA binding and thus reduces the translational repression of hTS (reviewed in 8, 9). This effect is reversed in some other species (10).#R##N##R##N#Human TS differs from bacterial TS in three regions: the N-terminus of hTS is extended by 28–29 residues and two insertions of 12 and eight residues are present at positions 117 and 146 of hTS, respectively (2). The crystal structure of hTS has been initially determined using crystals obtained at high ammonium sulfate concentrations (11, 12). At these conditions the active-site loop 181–197 is in a conformation different from that observed in bacterial TS. Since this conformation places Cys195, a residue crucial for catalytic activity, outside the active site, the conformer must be inactive. Another characteristic feature is that loop 108–129, which contains one of the eukaryotic inserts, was disordered. There were four sulfate ions bound per subunit, which appeared to stabilize the inactive conformer. Studies of a truncated version of hTS (13) and an inhibitory complex of hTS with dUMP and raltitrexed (14) yielded high-resolution structures of hTS with loop 181–197 in the active conformation. In these structures, determined at low salt concentration, loop 108–129 was ordered. Later studies showed that also at low salt, 30 mM ammonium sulfate, hTS adopts the inactive conformation with loop 108–129 disordered (15). Intrinsic fluorescence studies of hTS showed that in solution there is equilibrium between the active and inactive conformers and that the presence of phosphate or sulfate ions drives the equilibrium towards the inactive conformation, while dUMP, a substrate, drives it towards the active conformation (12). It was proposed that the stabilization of the inactive conformation may be used to achieve hTS inhibition (11) and was argued that it may yield therapeutic outcomes superior to those of classical active-site-directed inhibitors as it may not lead to increased levels of TS (12; 16).#R##N##R##N#The enzyme is a dimer of two identical subunits, which generate an asymmetry upon substrate/ligand binding (17). The negative cooperativity between subunits strongly depends on inhibitors (18) and the source of the enzyme. Among many structural studies of inhibitory complexes of TS only one reports a structure of the enzyme with an inhibitor bound in only one subunit; Pneumocystis carini TS (PcTS) binds an antifolate, CB3717, with Kd values which differ by a factor of 8000 between the subunits and crystallized with one subunit forming a ternary inhibitory complex PcTS•dUMP• CB3717 while the other active site contained only loosely bound dUMP (19).#R##N##R##N#Here we report studies which indicate that cooperativity between the hTS subunits is not limited to substrate or substrate analogues binding but also is reflected in the binding of molecules that affect equilibrium between the active and inactive conformations of loop 181–197.", "author": ["Lebioda ", "Gibson Lydia M.", "Lovelace Leslie L."], "localIdentifier": [{"type": "doi", "id": "10.1021/bi061309j"}], "id": "50|dli_resolver::ba2765ea6e1030fa3d3ed369334bc8ec", "relatedPublications": 0, "date": [""], "title": ["\"Cooperative Inhibition of Human Thymidylate Synthase by Mixtures of Active Site Binding and Allosteric Inhibitors†,‡\""], "relatedDatasets": 1}
304
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::70735c522e1756e6c10082f25268c115", "id": {"identifier": "10.5517/cc50zjn", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6f7239102a0163d1ee2645debe2573ee", "id": {"identifier": "10.5517/cc50zhm", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "Reaction of isomeric mixture of 1,2,3,4-tetramethyl-5-(trifluoromethyl)cyclopentadiene with Zeise's salt dimer gave the only isomer [Pt{η 4 -C 5 Me 4 (CF 3 )H}Cl 2 ] ( 1 ) bearing CF 3  group  exo  to sp 3  carbon atom in a high yield. An attempt to prepare  1  by reaction of K 2 PtCl 4  with C 5 Me 4 (CF 3 )H using hydrochloric solution of tin dichloride as a catalyst unexpectedly resulted in a formation of [Pt(η 4 -C 5 Me 4 H 2 )Cl 2 ] ( 2 ). The X-ray structure of compound  2  is presented. Reactions of  1  with AgBF 4  in the presence of three different cyclopentadienes C 5 R 1  4 (R 2 )H (R 1 =R 2 =H; R 1 =R 2 =Me; R 1 =Me, R 2 =CF 3 ) were studied. Crystal structure of complex [Pt{η 4 -C 5 Me 4 (CF 3 )H}(η 5 -C 5 H 5 )]PF 6  ( 3 ) resulted from the reaction with cyclopentadiene was determined. When C 5 Me 4 (CF 3 )H is used the reaction yields [Pt{η 4 -C 5 Me 4 (CF 3 )H}{η 5 -C 5 Me 4 (CF 3 )}]BF 4  ( 4 ) unstable in solutions. Reaction with pentamethylcyclopentadiene led to complex [Pt(η 4 -C 5 Me 5 H)(η 5 -C 5 Me 5 )]BF 4  ( 5 ) and no complexes with CF 3  containing ligands were obtained.", "author": ["Lyssenko Konstantin A.", "Ievlev Mikhail A.", "Gusev Oleg V.", "Kropotova Anna G.", "Ustynyuk Nikolai A.", "Peganova Tat'yana A.", "Petrovskii Pavel V.", "Oprunenko Yuri F."], "localIdentifier": [{"type": "doi", "id": "10.1016/s0022-328x(00)00924-4"}], "id": "50|dli_resolver::444b422f47dbe66f599c9c2c79796e3d", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis of platinum complexes with η4-C5Me4(CF3)H ligand. X-ray structure of Pt(η4-C5Me4H2)Cl2 and Pt{η4-C5Me4(CF3)H}(η5-C5H5)PF6\""], "relatedDatasets": 2}
305
{"publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::2a92670839078c5cba48cde383910535", "id": {"identifier": "10.6084/m9.figshare.5048038", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::66137439f8573a42516afaf3249699e8", "id": {"identifier": "10.6084/m9.figshare.5048038.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceId": "dli_________::crossref", "datasourceName": "Crossref"}, {"completionStatus": "incomplete", "datasourceId": "dli_________::datacite", "datasourceName": "Datasets in Datacite"}], "relatedDatasets": 2, "relatedUnknown": 0, "externalRels": [], "abstract": "ABSTRACTIn nuclear safety field, neutronic and thermalhydraulic codes performance is an important issue. New capabilities implementation, as well as models and tools improvements are a significant part of the community effort in looking for better nuclear power plants (NPP) designs. A procedure to analyze the PWR response to local deviations on neutronic or thermalhydraulic parameters is being developed. This procedure includes the simulation of Incore and Excore neutron flux detectors signals. A control rod drop real plant transient is used to validate the used codes and their new capabilities. Cross-section data are obtained by means of the SIMTAB methodology. Detailed thermalhydraulic models were developed: RELAP5 and TRACE models simulate three different azimuthal zones. Besides, TRACE model is performed with a fully three-dimensional core, thus, the cross-flow can be obtained. A Cartesian vessel represents the fuel assemblies and a cylindrical vessel the bypass and downcomer. Simulated detectors sign...", "author": ["Mesado Carles", "Verdú Gumersindo", "López Arturo", "Bermejo Juan Antonio", "Barrachina Teresa", "Ortego Alberto", "Garcia-Fenoll Marina", "Miró Rafael"], "localIdentifier": [{"type": "doi", "id": "10.1080/00223131.2017.1329035"}], "id": "50|dli_resolver::0376d82cbacecb3ee908311e507ea5d5", "relatedPublications": 0, "date": [""], "title": ["\"Validation of 3D neutronic-thermalhydraulic coupled codes RELAP5/PARCSv2.7 and TRACEv5.0P3/PARCSv3.0 against a PWR control rod drop transient\""], "typology": "publication"}
306
{"typology": "publication", "publisher": ["Informa UK Limited"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::ca6f4b71b7749964b1b7e5ad06169129", "id": {"identifier": "10.6084/m9.figshare.4004322.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::c85577fb3316770b658017117e7c86ff", "id": {"identifier": "10.6084/m9.figshare.4004322", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Zhou Yu", "Feng Juan", "Wu Qingqin", "Hu Qizhou", "Fang Ruiqin", "Tang Lixia"], "localIdentifier": [{"type": "doi", "id": "10.1080/00387010.2016.1236822"}], "id": "50|dli_resolver::20016effb7c28d13f994eb4d8fd03528", "relatedPublications": 0, "date": [""], "title": ["Interaction between flavin mononucleotide-containing azoreductase and azo dyes"], "relatedDatasets": 2}
307
{"typology": "publication", "publisher": ["International journal of systematic and evolutionary microbiology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::06df2d739029f5bb9b371ec16b846536", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22328609&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::af5dc7b41ef4d904b948bd22b0e720bf", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22328609&result=read_study", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::5b6ea098975dce0b060ae5e2491db1ad", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=22328609&result=noncoding_release", "schema": "url"}}], "abstract": "None: A Gram-staining-positive, filamentous bacterium, which developed large globose sporangia at the ends of long sporangiophores on aerial mycelium, was isolated from dry soil collected in a deciduous forest in Thailand. The cell-wall peptidoglycan of the novel bacterium, which was designated strain A-T 1846(T), contained meso-diaminopimelic acid and the whole-cell sugars comprised rhamnose, ribose, mannose, glucose and galactose. The predominant menaquinone was MK-9(H(4)). Mycolic acids were not detected. The identified phospholipids were phosphatidylmethylethanolamine, phosphatidylethanolamine, hydroxyphosphatidylethanolamine, phosphatidylinositol, phosphatidylglycerol and diphosphatidylglycerol. The predominant cellular fatty acids were iso-C(16:0), iso-C(16 : 0) 2-OH and C(16 : 0) 10-methyl. The G+C content of the genomic DNA was 72 mol%. The phenotypic and chemotaxonomic characteristics of the novel strain resembled those of established members of the genus Kutzneria. Phylogenetic analyses based on 16S rRNA gene sequences also indicated that this strain belonged to the genus Kutzneria but as a representative of a putative novel species. In hybridization experiments, the DNA-DNA relatedness values recorded between the novel strain and established members of the genus Kutzneria all fell well below 70 %. Based on the phenotypic, chemotaxonomic and genotypic evidence and the results of the DNA-DNA hybridizations, strain A-T 1846(T) represents a novel species in the genus Kutzneria, for which the name Kutzneria buriramensis sp. nov. is proposed. The type strain is A-T 1846(T) (=BCC 29373(T) =NBRC 107931(T)). An emended description of the genus Kutzneria is provided.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "22328609"}, {"type": "doi", "id": "10.1099/ijs.0.036533-0"}], "author": ["Tamura Tomohiko", "Suriyachadkun Chanwit", "Chunhametha Suwanee", "Ngaemthao Wipaporn", "Sanglier Jean-Jacques"], "relatedPublications": 0, "id": "50|r3d100010527::1b8ad2dd89f832d87ddd4c7d38ec128d", "title": ["Kutzneria buriramensis sp. nov., isolated from soil, and emended description of the genus Kutzneria."], "relatedDatasets": 3}
308
{"typology": "publication", "publisher": ["Proceedings of the National Academy of Sciences of the United States of America"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::697961ea6420d574f66257a8b15fda87", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=6316351&result=sequence_release", "schema": "url"}}], "abstract": "None: The chromosomal translocations found in many B-cell tumors result in the joining of a c-myc oncogene with an immunoglobulin heavy chain switch region. This finding is striking because the natural function of switch regions is to mediate DNA rearrangements important to the maturation of immune responses. These normal switch rearrangements are probably mediated by specific enzymes. In this paper we report the isolation of the two reciprocal products of a recombination between a c-myc gene on murine chromosome 15 and an immunoglobulin switch region (S mu S gamma 2b) on chromosome 12. We have determined the sequences of these DNA molecules near the recombination sites and show that the recombination is nearly perfectly reciprocal, with a seven-nucleotide deletion. An examination of the sequences reported in this paper, and of sequences published by other authors, shows a correlation between the points of recombination for c-myc-S segment rearrangements and for normal heavy chain switches. We suggest that this correlation implies a role for switch recombination enzymes in creating substrates for the c-myc recombination. The c-myc gene also seems to share some limited homology to sequences thought to be important in heavy chain switching. Finally, we discuss a working model that accounts for some characteristics of c-myc-S segment recombinations. The model also suggests a mechanism for increased transcriptional activity of the rearranged c-myc oncogene in B-cell tumors.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "6316351"}], "author": ["Dery C", "Dunnick W", "Shell B E"], "relatedPublications": 0, "id": "50|r3d100010527::ef72c46d3f8a820c09c8a400c3850b28", "title": ["DNA sequences near the site of reciprocal recombination between a c-myc oncogene and an immunoglobulin switch region."], "relatedDatasets": 1}
309
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::1b587c662ef6a70115c712814d33df8d", "id": {"identifier": "4pbx", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|r3d100010327::0dd2cb966276bdf8fc202a74b5ff479d", "id": {"identifier": "4pbv", "schema": "pdb"}}, {"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::cab7ba3c8cdf9cab5dd18da05a5a7807", "id": {"identifier": "4pbw", "schema": "pdb"}}], "abstract": "Receptor protein tyrosine phosphatase sigma (RPTPσ) regulates neuronal extension and acts as a presynaptic nexus for multiple protein and proteoglycan interactions during synaptogenesis. Unknown mechanisms govern the shift in RPTPσ function, from outgrowth promotion to synaptic organization. Here, we report crystallographic, electron microscopic and small-angle X-ray scattering analyses, which reveal sufficient inter-domain flexibility in the RPTPσ extracellular region for interaction with both cis (same cell) and trans (opposite cell) ligands. Crystal structures of RPTPσ bound to its postsynaptic ligand TrkC detail an interaction surface partially overlapping the glycosaminoglycan-binding site. Accordingly, heparan sulphate and heparin oligomers compete with TrkC for RPTPσ binding in vitro and disrupt TrkC-dependent synaptic differentiation in neuronal co-culture assays. We propose that transient RPTPσ ectodomain emergence from the presynaptic proteoglycan layer allows capture by TrkC to form a trans-synaptic complex, the consequent reduction in RPTPσ flexibility potentiating interactions with additional ligands to orchestrate excitatory synapse formation.", "author": ["Coles Charlotte H.", "Craig Ann Marie", "Elegheert Jonathan", "Lu Weixian", "Stoker Andrew W.", "Nakagawa Terunaga", "Mitakidis Nikolaos", "Zhang Peng", "Yvonne, Jones E.", "Radu, Aricescu A."], "localIdentifier": [{"type": "doi", "id": "10.1038/ncomms6209"}], "id": "50|dli_resolver::7db69bcddc692be7c97c5bc312f3eaf0", "relatedPublications": 0, "date": [""], "title": ["\"Structural basis for extracellular cis and trans RPTPσ signal competition in synaptogenesis\""], "relatedDatasets": 3}
310
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::6f9f7bde72fe491590e7908026054808", "id": {"identifier": "10.5517/cc72bp9", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::5660db303ad91e122c8e6f09b677352e", "id": {"identifier": "10.5517/cc72bn8", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "A series of model dipeptides containing some novel axially chiral α,β-didehydroamino acids at the ( i +1) position has been synthesised by reaction of the corresponding 4-(4-alkylcyclohexylidene)-2-phenyl-1,3-oxazol-5(4 H )-one with ( S )-phenylalanine cyclohexylamide. The conformations of two dipeptides in the crystal state have been studied by X-ray diffraction crystallographic analysis. The backbone torsion angles suggest that both peptides adopt similar type-II′ β-turn conformations. NMR spectroscopy has revealed that relatively rigid β-turn structures also persist in solution and that the absolute configurations of the axially chiral α,β-didehydroamino acids do not significantly influence the conformation of the peptide chain. Both heterochiral and homochiral dipeptides are found to accommodate the same βII′-turn conformation. Axially chiral α,β-didehydroamino acids ( R   a  )- and ( S   a  )-4-methyl-, 4-phenyl- and (4- tert -butylcyclohexylidene)glycine can be considered as elongated structural analogues of alanine, phenylglycine and  tert -leucine of  R  and  S  configuration since, in these chiral α,β-didehydroamino acids, the methyl, phenyl and  tert -butyl groups are located about 4.3 A away from the peptide backbone in which they are incorporated.", "author": ["Díaz-de-Villegas María D.", "Gálvez José A.", "Cativiela Carlos", "Su Guifa"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.tet.2004.09.066"}], "id": "50|dli_resolver::43d5b55238cb2638474a8b453c2bcae7", "relatedPublications": 0, "date": [""], "title": ["\"Synthesis and conformational properties of model dipeptides containing novel axially chiral α,β-didehydroamino acids at the (i+1) position of a β-turn conformation\""], "relatedDatasets": 2}
311
{"typology": "publication", "publisher": ["Insect molecular biology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::9a69e7f041f01a7b09e039a184bc7131", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10762424&result=coding_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::edea3558f5199fa5c49410afbaad605f", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=10762424&result=sequence_release", "schema": "url"}}], "abstract": "None: Hexamerins are proteins found in high abundance in the haemolymph of larval and adult insects. The expression patterns of the genes encoding the house fly, Musca domestica, hexamerins were determined by Northern analyses using cDNAs as probes. A cDNA, A1, hybridized to a fat body-specific messenger RNA (mRNA) which is detectable in larvae until pupation. Antibodies raised to the larval-specific hexamerin, Hex-L, bind recombinant protein encoded by a 5' rapid amplification of cDNA ends (RACE) product of A1, A2, indicating that the A cDNAs likely represent the genes encoding Hex-L. The F1, F2 and F3 cDNAs, corresponding to genes encoding an adult, female-enriched hexamerin, Hex-F, hybridized with an mRNA isolated from protein-fed females which has a temporal expression profile similar to that observed for the accumulation of Hex-F. Furthermore, expression of the mRNAs hybridizing to the F cDNAs is correlated with the abundance of Hex-F protein during the gonotrophic cycles. The mRNA transcription profiles indicate that the Hex-L and Hex-F genes are regulated in a sex-, tissue- and developmental phase-dependent manner. This stage-specific expression of hexamerins contrasts with the expression patterns of hexamerins seen in other insects. The conceptual translation products of larval hexamerin cDNAs showed identity with larval serum protein 1 (LSP1)-type hexamerins while the deduced products of the female hexamerin cDNAs showed the highest identity with LSP2-type hexamerins. Genomic analyses showed that the larval hexamerin and female hexamerin genes from M. domestica belong to two distinct multigenic families.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "10762424"}], "author": ["Capurro M L", "James A A", "Moreira-Ferro C K", "de Bianchi A G", "Marinotti O"], "relatedPublications": 0, "id": "50|r3d100010527::1c95346d5d1a92b03d9fc4a3cb01a8cd", "title": ["Expression patterns of the larval and adult hexamerin genes of Musca domestica."], "relatedDatasets": 2}
312
{"typology": "publication", "publisher": ["Springer Nature"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::c8b6b1a808e1c51c6ecf5264e92c4ac0", "id": {"identifier": "10.6084/m9.figshare.c.3933865_d2.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::623f5d78572ba4c2a5f684e893c7c259", "id": {"identifier": "10.6084/m9.figshare.c.3933865", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::b0289a3a7ce470c0e6fd3b3dfee40a71", "id": {"identifier": "10.6084/m9.figshare.c.3933865.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::3a4d7d29d828c5e9b860d6d1be439f70", "id": {"identifier": "10.6084/m9.figshare.c.3933865_d1.v1", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Yue Qingxia", "Zhang Lijie", "Xu Li", "Chu Xiaoyu", "Liu Xiaoqing", "Tian Jian", "Yang Yunxia", "Zhao Jintong", "Wu Ningfeng"], "localIdentifier": [{"type": "doi", "id": "10.1186/s40643-017-0178-0"}], "id": "50|dli_resolver::be24350ba7e470e4a07828f7353a4743", "relatedPublications": 0, "date": [""], "title": ["\"Identification of bacterial laccase cueO mutation from the metagenome of chemical plant sludge\""], "relatedDatasets": 4}
313
{"typology": "publication", "publisher": ["Elsevier BV"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::029ec3e18bb4679aca431c664e41dcba", "id": {"identifier": "10.1594/pangaea.777751", "schema": "doi"}}, {"relationSemantic": "unknown", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::029ec3e18bb4679aca431c664e41dcba", "id": {"identifier": "10.1594/pangaea.777751", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Pangaea", "datasourceId": "dli_________::r3d100010134"}, {"completionStatus": "incomplete", "datasourceName": "Thomson Reuters", "datasourceId": "dli_________::thomsonreuters"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "article i nfo Article history: Changes in intermediate and deep ocean circulation likely played a significant role in global carbon cycling and meridional heat/moisture transport during the middle Miocene climate transition (∼14 Ma). High- resolution middle Miocene (16-13 Ma) benthic foraminifer stable isotope records from the South China Sea reveal a reorganization of regional bottom waters, which preceded the globally recognized middle Miocene ∼1‰ δ 18 O increase (13.8 Ma) by 100,000 years. An observed reversal of the benthic foraminifera δ 13 C gradient between ODP Sites 1146 (2092 m) and 1148 (3294 m; 13.9-13.5 Ma) is interpreted to reflect an", "author": ["Tian Jun", "Zhao Quanhong", "Li Qianyu", "Shevenell Amelia", "Cheng Xinrong", "Wang Pinxian"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.palaeo.2009.10.019"}], "id": "50|dedup_wf_001::35b53c3692411ffad7a54f4b6714865c", "relatedPublications": 0, "date": [""], "title": ["\"Reorganization of Pacific Deep Waters linked to middle Miocene Antarctic cryosphere expansion: A perspective from the South China Sea\""], "relatedDatasets": 2}
314
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "pubmed______"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::85c82201cd16de06267db1bc3ab5a765", "id": {"identifier": "gq456128", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::2de88ca2e454b8d5ad6e5ff594200844", "id": {"identifier": "jq659580", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::026cf6d2e11c6c730b8c7777b8ba85bf", "id": {"identifier": "ef090268", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::9e39e287d86255dd6fde0bb469278b1f", "id": {"identifier": "gq456130", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::43930fb0ebc4f3870f37618f073cae6a", "id": {"identifier": "dq185574", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::afd7a01f8c33caa37d36b13277a2fff8", "id": {"identifier": "jn110434", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::7493b0b4d70e94200a2b638e140e2986", "id": {"identifier": "jn592464", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::f82e27b804f83d6568f1f9bfe8e56108", "id": {"identifier": "af292238", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::ce01dbebfe24ace160b6f91a6250e678", "id": {"identifier": "fj719709", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::44bdbba2408a58876bbcc56389984c90", "id": {"identifier": "dq983313", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::820d42d403a7357d8d318a818fe031fa", "id": {"identifier": "gq456129", "schema": "ena"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|dli_resolver::3816ccda50cbb2775e02f888fab4d2c7", "id": {"identifier": "jf681288", "schema": "ena"}}], "abstract": "", "author": ["Bouwer, Edward J.", "Proescher, Jody B.", "Ashok Sivakumar, I. K.", "Onesios-Barry, Kathryn M.", "David Berry"], "localIdentifier": [{"type": "pmid", "id": "24509919"}], "id": "50|pubmed______::40293942eb5754b05c7139559b487732", "relatedPublications": 0, "date": ["2014-02-07"], "title": ["Removal of pharmaceuticals and personal care products during water recycling: microbial community structure and effects of substrate concentration."], "relatedDatasets": 12}
315
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316
{"typology": "publication", "publisher": ["Journal of molecular biology"], "datasources": [{"completionStatus": "incomplete", "datasourceName": "European Nucleotide Archive", "datasourceId": "r3d100010527"}, {"completionStatus": "complete", "datasourceName": "PubMed", "datasourceId": "dli_________::pubmed"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::999f1271bae317280166242cdde52c33", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7541838&result=sequence_release", "schema": "url"}}, {"relationSemantic": "isRelatedTo", "collectedFrom": "European Nucleotide Archive", "dnetId": "60|r3d100010527::af62298d87b5256afc9272dad7c8ad91", "id": {"identifier": "http://www.ebi.ac.uk/ena/data/search/?query=7541838&result=coding_release", "schema": "url"}}], "abstract": "None: The genetic cassette encoding the DpnII restriction-modification system of Streptococcus pneumoniae gave transcription products of approximately 2.7 and 1.8 kilobases. The larger, mRNA1, covered both of the methylase genes, dpnM and dpnA, and the endonuclease gene dpnB; the smaller, mRNA2, covered only the dpnA and dpnB genes. Transcription of mRNA1 was shown to begin at the translation start site for dpnM, thereby producing an mRNA without any apparent ribosome-binding site for translation of the DpnM methylase. The promoter for mRNA1 was shown by base substitution and deletion analysis to consist of an extended -10 site, TaTGgTATAAT, with no required -35 site. A possible promoter further upstream with close matches to a -35 site and a nonextended -10 site was not used. A survey of 36 proven and putative promoters used by S. pneumoniae revealed that 61% of them contained the full -10 extension, although, other than the dpnM promoter, they matched at a -35 site, as well. It appears that, unlike those found in Escherichia coli, S. pneumoniae promoters frequently require an extended -10 site, and such a site can function naturally without a -35 site.", "doiRels": [], "localIdentifier": [{"type": "pbmid", "id": "7541838"}], "author": ["Greenberg B", "Lacks S A", "Sabelnikov A G"], "relatedPublications": 0, "id": "50|r3d100010527::3715d142729e8a03c195dc955fd7cd22", "title": ["An extended -10 promoter alone directs transcription of the DpnII operon of Streptococcus pneumoniae."], "relatedDatasets": 2}
317
{"typology": "publication", "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Elsevier", "datasourceId": "dli_________::elsevier"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::2c3eb0397fe1aac77cbd4b9437ac68cd", "id": {"identifier": "m58335", "schema": "ncbi-n"}}, {"relationSemantic": "isReferencedBy", "collectedFrom": "NCBI Nucleotide", "dnetId": "60|dli_resolver::008bb61143b326495c0bbe60ca5b7a69", "id": {"identifier": "d00944", "schema": "ncbi-n"}}], "abstract": "", "title": ["Evaluation of core and NS4B synthetic peptide-based immunoassays for the detection of hepatitis C virus antibodies in clinical samples from Cameroon, Central Africa"], "localIdentifier": [{"type": "doi", "id": "10.1016/j.jcv.2010.06.005"}], "id": "50|elsevier____::d4b29e7908e12e6621101477b1ece246", "relatedPublications": 0, "date": ["2010"], "relatedDatasets": 2}
318
{"typology": "publication", "publisher": ["Oxford University Press (OUP)"], "doiRels": [], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "RCSB", "datasourceId": "dli_________::r3d100010327"}], "relatedUnknown": 0, "externalRels": [{"relationSemantic": "unknown", "collectedFrom": "RCSB", "dnetId": "60|dedup_wf_001::3278d7297edae4e1cf3f46fca9ded163", "id": {"identifier": "3ess", "schema": "pdb"}}], "abstract": "Abstract#R##N##R##N#The emergence of bacterial antibiotic resistance poses a significant challenge in the pursuit of novel therapeutics, making new strategies for drug discovery imperative. We have developed a yeast growth-defect phenotypic screen to help solve this current dilemma. This approach facilitates the identification and characterization of a new diphtheria toxin (DT) group, ADP-ribosyltransferase toxins from pathogenic bacteria. In addition, this assay utilizes Saccharomyces cerevisiae, a reliable model for bacterial toxin expression, to streamline the identification and characterization of new inhibitors against this group of bacterial toxins that may be useful for antimicrobial therapies. We show that a mutant of the elongation factor 2 target protein in yeast, G701R, confers resistance to all DT group toxins and recovers the growth-defect phenotype in yeast. We also demonstrate the ability of a potent small-molecule toxin inhibitor, 1,8-naphthalimide (NAP), to alleviate the growth defect caused by toxin expression in yeast. Moreover, we determined the crystal structure of the NAP inhibitor–toxin complex at near-atomic resolution to provide insight into the inhibitory mechanism. Finally, the NAP inhibitor shows therapeutic protective effects against toxin invasion of mammalian cells, including human lung cells.", "author": ["Jørgensen René", "Mangroo Dev", "Turgeon Zachari", "Rod, Merrill A.", "White Dawn", "Fieldhouse Robert J.", "Visschedyk Danielle"], "localIdentifier": [{"type": "doi", "id": "10.1111/j.1574-6968.2009.01777.x"}], "id": "50|dli_resolver::93f892f292e4734d915a4099b6444374", "relatedPublications": 0, "date": [""], "title": ["\"Yeast as a tool for characterizing mono-ADP-ribosyltransferase toxins\""], "relatedDatasets": 1}
319
{"typology": "publication", "publisher": ["The Optical Society"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|datacite____::a1275d9432a47cea3a8fd4528f292327", "id": {"identifier": "10.6084/m9.figshare.c.3883645.v1", "schema": "doi"}}, {"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::1fd9f0b000fb57684b5c81f82f52d4fb", "id": {"identifier": "10.6084/m9.figshare.c.3883645", "schema": "doi"}}], "datasources": [{"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "", "author": ["Kessler Christian A.", "Hilaire Paul", "Lemaître Aristide", "Sagnes Isabelle", "Lanco Loïc", "Somaschi Niccolo", "Gómez Carmen", "Krebs Olivier", "Antón Carlos", "Lanzillotti-Kimura Norberto Daniel", "Senellart Pascale", "Demory Justin"], "localIdentifier": [{"type": "doi", "id": "10.1364/optica.4.001326"}], "id": "50|dli_resolver::206ef2a5d4001107886303e22acfb072", "relatedPublications": 0, "date": [""], "title": ["\"Tomography of the optical polarization rotation induced by a single quantum dot in a cavity\""], "relatedDatasets": 2}
320
{"typology": "publication", "publisher": ["Royal Society of Chemistry (RSC)"], "doiRels": [{"relationSemantic": "isSupplementedBy", "collectedFrom": "Datasets in Datacite", "dnetId": "60|dedup_wf_001::b294f64b800d9eeae40b1d4dccd76391", "id": {"identifier": "10.5517/ccvrtlz", "schema": "doi"}}], "datasources": [{"completionStatus": "incomplete", "datasourceName": "Cambridge Crystallographic Data Centre", "datasourceId": "dli_________::r3d100010197"}, {"completionStatus": "complete", "datasourceName": "Crossref", "datasourceId": "dli_________::crossref"}, {"completionStatus": "incomplete", "datasourceName": "Datasets in Datacite", "datasourceId": "dli_________::datacite"}], "relatedUnknown": 0, "externalRels": [], "abstract": "The synthesis and characterization of a series of fluorescent bis-dithienylethene (DTE)-based bipyridines, where the donor (D) and acceptor (A) groups are located on the same thiophene ring of the DTE unit, and their zinc(II) and rhenium(I) complexes are reported. Their photochromic properties have been investigated by UV-visible and 1H NMR spectroscopy. These studies reveal that in non-polar solvents it is possible to modulate the photoreactivity, single vs. double ring-closure, by changing the nature of the donor group. The solvent effect, as well as the influence of the organometallic moieties on the photochromic behavior of these molecules, is also discussed. Finally, upon photoconvers