D-Net

	public void testParseSoftwareBiotool() throws Exception {

		final List<Row> rows = Lists.newArrayList();

		rows.addAll(asRows(loadFromTransformationProfile("odf2hbase.xml"), load("biotoolSw.xml")));

		printAll(mapAll(buildTable(rows)));

	}

	@Test

<?xml version="1.0" encoding="UTF-8"?>

<record xmlns:datacite="http://datacite.org/schema/kernel-4"

        xmlns:dc="http://purl.org/dc/elements/1.1/"

        xmlns:dr="http://www.driver-repository.eu/namespace/dr"

        xmlns:oaf="http://namespace.openaire.eu/oaf" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">

	<oai:header xmlns="http://namespace.openaire.eu/"

	            xmlns:dri="http://www.driver-repository.eu/namespace/dri"

	            xmlns:oai="http://www.openarchives.org/OAI/2.0/" xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance">

		<dri:objIdentifier>__bioTools__::001a7c03357f7060315bfe53ab8d2b05</dri:objIdentifier>

		<dri:recordIdentifier>Scoary</dri:recordIdentifier>

		<dri:dateOfCollection>2018-09-27T08:50:11.429Z</dri:dateOfCollection>

		<oaf:datasourceprefix>__bioTools__</oaf:datasourceprefix>

		<dr:dateOfTransformation>2018-11-13T18:01:16.337Z</dr:dateOfTransformation>

	</oai:header>

	<metadata>

		<datacite:resource>

			<dr:CobjCategory type="software">0029</dr:CobjCategory>

			<oaf:concept id="elixir-gr"/>

			<datacite:resourceType resourceTypeGeneral="Software">Command-line tool</datacite:resourceType>

			<datacite:format>Python</datacite:format>

			<oaf:accessrights>OPEN SOURCE</oaf:accessrights>

			<oaf:accessrights>UNKNOWN</oaf:accessrights>

			<oaf:license>GPL-3.0</oaf:license>

			<oaf:hostedBy id="rest________::bioTools" name="bio.tools"/>

			<oaf:collectedFrom id="rest________::bioTools" name="bio.tools"/>

			<datacite:publisher>bio.tools</datacite:publisher>

			<datacite:alternateIdentifier alternateIdentifierType="LandingPage">https://bio.tools/Scoary</datacite:alternateIdentifier>

			<datacite:relatedIdentifier relatedIdentifierType="URL" relationType="IsDocumentedBy">https://github.com/AdmiralenOla/Scoary/blob/master/LICENSE</datacite:relatedIdentifier>

			<datacite:alternateIdentifier alternateIdentifierType="DistributionLocation">https://github.com/AdmiralenOla/Scoary</datacite:alternateIdentifier>

			<datacite:alternateIdentifier alternateIdentifierType="local accession id">Scoary</datacite:alternateIdentifier>

			<oaf:identifier>Scoary</oaf:identifier>

			<datacite:title>Scoary</datacite:title>

			<datacite:version>1.6.11</datacite:version>

			<datacite:creator>

				<datacite:creatorName>Brynildsrud, Ola</datacite:creatorName>

				<datacite:givenName>Ola</datacite:givenName>

				<datacite:familyName>Brynildsrud</datacite:familyName>

			</datacite:creator>

			<contributors>

				<contributor contributorType="ContactPerson">

					<contributorName>Starr, Joan</contributorName>

					<givenName>Joan</givenName>

					<familyName>Starr</familyName>

					<nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">0000-0002-7285-027X</nameIdentifier>

					<affiliation>California Digital Library</affiliation>

				</contributor>

			</contributors>

			<datacite:relatedIdentifier relatedIdentifierType="DOI" relationType="isCitedBy">10.1186/s13059-016-1108-8</datacite:relatedIdentifier>

			<datacite:description descriptionType="Abstract">Pan-genome wide association studies and  is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome (all genes that are present in i genomes where 1 &lt; i &lt; N) and the traits. It reports a list of genes sorted by strength of association per trait.</datacite:description>

			<description descriptionType="Abstract">

				Computation of Fast Fourier Transform

			</description>

			<datacite:description descriptionType="TechnicalInfo">Linux</datacite:description>

			<datacite:description descriptionType="TechnicalInfo">Scoary correlates the genes of an accessory genome to an observed phenotype (e.g. resistance towards a certain antibiotic compound, a particular pathotype etc.). It is thus a quick way of establishing possible genetic mechanisms of an expressed trait, not unlike a GWAS, but with the entire pan-genome rather than a core set of mutations. Scoary works on both bacteria, Archea and (in theory at least) viruses.</datacite:description>

			<datacite:subject schemeURI="http://edamontology.org" subjectScheme="EDAM Ontology">topic_0625 Genotype and phenotype</datacite:subject>

			<oaf:dateAccepted>2016-09-12</oaf:dateAccepted>

		</datacite:resource>

	</metadata>

	<about xmlns:dri="http://www.driver-repository.eu/namespace/dri"

	       xmlns:oai="http://www.openarchives.org/OAI/2.0/" xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance">

		<provenance xmlns="http://www.openarchives.org/OAI/2.0/provenance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/provenance http://www.openarchives.org/OAI/2.0/provenance.xsd">

			<originDescription altered="true" harvestDate="2018-09-27T08:50:11.429Z">

				<baseURL>https://bio.tools/api/tool</baseURL>

				<identifier/>

				<datestamp/>

				<metadataNamespace/>

			</originDescription>

		</provenance>

		<oaf:datainfo>

			<oaf:inferred>false</oaf:inferred>

			<oaf:deletedbyinference>false</oaf:deletedbyinference>

			<oaf:trust>0.9</oaf:trust>

			<oaf:inferenceprovenance/>

			<oaf:provenanceaction classid="sysimport:crosswalk:repository"

			                      classname="sysimport:crosswalk:repository"

			                      schemeid="dnet:provenanceActions" schemename="dnet:provenanceActions"/>

		</oaf:datainfo>

	</about>

</record>